dials 1.0 --------- REQUIREMENTS: VMD Version 1.1 or greater, use in orthographic mode DESCRIPTION: This code is useful to those who do micromanipulation experiments. These simulations involve pulling parts of molecules in order to reveal structural or binding properties of the system. Typically the output of this work is an animation showing the conformational changes resulting from pulling on certain segments. Often it is useful to know the times at which events occur and the strength with which the segments are pulled. The dial-makers included here do just that. As the animation progresses, the 'clock' ticks away and the force gauge updates according to how strongly the segment was pulled. The author of this script generalized most of this code, but you will undoubtedly have to put on some Tcl gloves and modify the code a bit in order to customize the graphics to your simulation. This script is included in the library as more of a template than a cut-and-paste item. Source it and type 'disp_time' for a look at the dials. See the text of the script itself for more detailed information. PROCEDURES: disp_time - creates a 140 ps display disp_time3 - creates a 30ps display disp_force - creates a 3000pN display EXAMPLE OUTPUT Sample showing a force dial and time dial. DOWNLOAD THE FILE: dials.tcl AUTHOR: Willy Wriggers (wriggers@ks.uiuc.edu)