| A12_f | ComputeNonbondedUtil | static |
| A6_f | ComputeNonbondedUtil | static |
| accelMDOn | ComputeNonbondedUtil | static |
| alchDecouple | ComputeNonbondedUtil | static |
| alchFepOn | ComputeNonbondedUtil | static |
| alchThermIntOn | ComputeNonbondedUtil | static |
| alchVdwShiftCoeff | ComputeNonbondedUtil | static |
| alchWCAOn | ComputeNonbondedUtil | static |
| assignPatches(ComputeMgr *computeMgrIn) | CudaComputeNonbonded | |
| assignPatchesOnPe() | CudaComputeNonbonded | |
| atomUpdate() | CudaComputeNonbonded | virtual |
| B12_f | ComputeNonbondedUtil | static |
| B6_f | ComputeNonbondedUtil | static |
| basePriority | Compute | protected |
| c0 | ComputeNonbondedUtil | static |
| c1 | ComputeNonbondedUtil | static |
| C12_f | ComputeNonbondedUtil | static |
| c3 | ComputeNonbondedUtil | static |
| c5 | ComputeNonbondedUtil | static |
| c6 | ComputeNonbondedUtil | static |
| C6_f | ComputeNonbondedUtil | static |
| c7 | ComputeNonbondedUtil | static |
| c8 | ComputeNonbondedUtil | static |
| calc_error(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_int(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_int(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_fulldisp(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_int(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_merge_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_slow_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_energy_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect_fulldisp(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_merge_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_slow_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_slow_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_slow_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_slow_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_slow_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_slow_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_pair_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_int(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_int(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_fulldisp(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_int(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_merge_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect_fep(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_slow_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_energy_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect_fulldisp(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_merge_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_slow_fullelect(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_slow_fullelect_go(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_slow_fullelect_les(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_slow_fullelect_pprof(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_slow_fullelect_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_slow_fullelect_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_tabener(nonbonded *) | ComputeNonbondedUtil | static |
| calc_self_ti(nonbonded *) | ComputeNonbondedUtil | static |
| calcFullPair | ComputeNonbondedUtil | static |
| calcFullPairEnergy | ComputeNonbondedUtil | static |
| calcFullSelf | ComputeNonbondedUtil | static |
| calcFullSelfEnergy | ComputeNonbondedUtil | static |
| calcGBIS(nonbonded *params, GBISParamStruct *gbisParams) | ComputeNonbondedUtil | |
| calcMergeDispPair | ComputeNonbondedUtil | static |
| calcMergeDispPairEnergy | ComputeNonbondedUtil | static |
| calcMergeDispSelf | ComputeNonbondedUtil | static |
| calcMergeDispSelfEnergy | ComputeNonbondedUtil | static |
| calcMergePair | ComputeNonbondedUtil | static |
| calcMergePairEnergy | ComputeNonbondedUtil | static |
| calcMergeSelf | ComputeNonbondedUtil | static |
| calcMergeSelfEnergy | ComputeNonbondedUtil | static |
| calcPair | ComputeNonbondedUtil | static |
| calcPairEnergy | ComputeNonbondedUtil | static |
| calcSelf | ComputeNonbondedUtil | static |
| calcSelfEnergy | ComputeNonbondedUtil | static |
| calcSlowPair | ComputeNonbondedUtil | static |
| calcSlowPairEnergy | ComputeNonbondedUtil | static |
| calcSlowSelf | ComputeNonbondedUtil | static |
| calcSlowSelfEnergy | ComputeNonbondedUtil | static |
| cid | Compute | |
| columnsize | ComputeNonbondedUtil | static |
| commOnly | ComputeNonbondedUtil | static |
| Compute(ComputeID) | Compute | |
| ComputeNonbondedUtil() | ComputeNonbondedUtil | inline |
| computeType | Compute | protected |
| corr_table | ComputeNonbondedUtil | static |
| CudaComputeNonbonded(ComputeID c, int deviceID, CudaNonbondedTables &cudaNonbondedTables, bool doStreaming) | CudaComputeNonbonded | |
| cutoff | ComputeNonbondedUtil | static |
| cutoff2 | ComputeNonbondedUtil | static |
| cutoff2_f | ComputeNonbondedUtil | static |
| cutoff_3 | ComputeNonbondedUtil | static |
| cutoff_3_f | ComputeNonbondedUtil | static |
| cutoff_6 | ComputeNonbondedUtil | static |
| cutoff_6_f | ComputeNonbondedUtil | static |
| dielectric_1 | ComputeNonbondedUtil | static |
| doWork() | CudaComputeNonbonded | virtual |
| drudeNbthole | ComputeNonbondedUtil | static |
| electEnergyIndex enum value | ComputeNonbondedUtil | |
| electEnergyIndex_s enum value | ComputeNonbondedUtil | |
| electEnergyIndex_ti_1 enum value | ComputeNonbondedUtil | |
| electEnergyIndex_ti_2 enum value | ComputeNonbondedUtil | |
| enqueueWork() | Compute | protected |
| ewaldcof | ComputeNonbondedUtil | static |
| exclChecksumIndex enum value | ComputeNonbondedUtil | |
| fast_table | ComputeNonbondedUtil | static |
| finishPatches() | CudaComputeNonbonded | |
| finishPatchesOnPe() | CudaComputeNonbonded | |
| finishPatchOnPe(int i) | CudaComputeNonbonded | |
| finishReductions() | CudaComputeNonbonded | |
| fixedAtomsOn | ComputeNonbondedUtil | static |
| full_table | ComputeNonbondedUtil | static |
| fullElectEnergyIndex enum value | ComputeNonbondedUtil | |
| fullElectEnergyIndex_s enum value | ComputeNonbondedUtil | |
| fullElectEnergyIndex_ti_1 enum value | ComputeNonbondedUtil | |
| fullElectEnergyIndex_ti_2 enum value | ComputeNonbondedUtil | |
| fullVdwEnergyIndex enum value | ComputeNonbondedUtil | |
| gbisP2PatchReady(PatchID, int seq) | CudaComputeNonbonded | virtual |
| gbisP3PatchReady(PatchID, int seq) | CudaComputeNonbonded | virtual |
| gbisPhase | Compute | protected |
| gbisPhasePriority | Compute | protected |
| getCurrentReduction() | CudaComputeNonbonded | |
| getDoTable(SimParameters *params, const bool doSlow, const bool doVirial) | CudaComputeNonbonded | static |
| getGBISPhase(void) | Compute | inline |
| getNonbondedCoef(SimParameters *params) | CudaComputeNonbonded | static |
| getNumPatches() | Compute | inline |
| getPatches() | CudaComputeNonbonded | inline |
| goForcesOn | ComputeNonbondedUtil | static |
| goGroPair | ComputeNonbondedUtil | static |
| goMethod | ComputeNonbondedUtil | static |
| goNativeEnergyIndex enum value | ComputeNonbondedUtil | |
| goNonnativeEnergyIndex enum value | ComputeNonbondedUtil | |
| groGaussEnergyIndex enum value | ComputeNonbondedUtil | |
| groLJEnergyIndex enum value | ComputeNonbondedUtil | |
| initialize() | CudaComputeNonbonded | virtual |
| k_vdwa | ComputeNonbondedUtil | static |
| k_vdwa_f | ComputeNonbondedUtil | static |
| k_vdwb | ComputeNonbondedUtil | static |
| k_vdwb_f | ComputeNonbondedUtil | static |
| lambda_table | ComputeNonbondedUtil | static |
| launchWork() | CudaComputeNonbonded | |
| ldObjHandle | Compute | |
| lesFactor | ComputeNonbondedUtil | static |
| lesOn | ComputeNonbondedUtil | static |
| lesScaling | ComputeNonbondedUtil | static |
| LJewaldcof | ComputeNonbondedUtil | static |
| ljTable | ComputeNonbondedUtil | static |
| localWorkMsg | Compute | |
| messageEnqueueWork() | CudaComputeNonbonded | |
| mol | ComputeNonbondedUtil | static |
| noWork() | CudaComputeNonbonded | virtual |
| openBoxesOnPe() | CudaComputeNonbonded | |
| pairInteractionOn | ComputeNonbondedUtil | static |
| pairInteractionSelf | ComputeNonbondedUtil | static |
| pairlistWarningIndex enum value | ComputeNonbondedUtil | |
| patchReady(PatchID, int doneMigration, int seq) | CudaComputeNonbonded | virtual |
| pi_ewaldcof | ComputeNonbondedUtil | static |
| pressureProfileAtomTypes | ComputeNonbondedUtil | static |
| pressureProfileMin | ComputeNonbondedUtil | static |
| pressureProfileOn | ComputeNonbondedUtil | static |
| pressureProfileSlabs | ComputeNonbondedUtil | static |
| pressureProfileThickness | ComputeNonbondedUtil | static |
| priority(void) | Compute | inline |
| qmForcesOn | ComputeNonbondedUtil | static |
| r2_delta | ComputeNonbondedUtil | static |
| r2_delta_1 | ComputeNonbondedUtil | static |
| r2_delta_exp | ComputeNonbondedUtil | static |
| r2_table | ComputeNonbondedUtil | static |
| reductionDataSize enum value | ComputeNonbondedUtil | |
| registerComputePair(ComputeID cid, PatchID *pid, int *trans) | CudaComputeNonbonded | |
| registerComputeSelf(ComputeID cid, PatchID pid) | CudaComputeNonbonded | |
| reSortTileLists() | CudaComputeNonbonded | |
| rowsize | ComputeNonbondedUtil | static |
| scale14 | ComputeNonbondedUtil | static |
| scaling | ComputeNonbondedUtil | static |
| scor_table | ComputeNonbondedUtil | static |
| select(void) | ComputeNonbondedUtil | static |
| sequence(void) | Compute | inline |
| setNumPatches(int n) | Compute | inline |
| skipPatchesOnPe() | CudaComputeNonbonded | |
| slow_table | ComputeNonbondedUtil | static |
| square(const BigReal &x, const BigReal &y, const BigReal &z) | ComputeNonbondedUtil | inlinestatic |
| submitPressureProfileData(BigReal *, SubmitReduction *) | ComputeNonbondedUtil | static |
| submitReductionData(BigReal *, SubmitReduction *) | ComputeNonbondedUtil | static |
| switchOn | ComputeNonbondedUtil | static |
| switchOn2 | ComputeNonbondedUtil | static |
| switchOn_1 | ComputeNonbondedUtil | static |
| switchOn_f | ComputeNonbondedUtil | static |
| table_alloc | ComputeNonbondedUtil | static |
| table_ener | ComputeNonbondedUtil | static |
| table_length | ComputeNonbondedUtil | static |
| table_noshort | ComputeNonbondedUtil | static |
| table_short | ComputeNonbondedUtil | static |
| TENSOR enum value | ComputeNonbondedUtil | |
| type() | Compute | inline |
| unregisterBoxesOnPe() | CudaComputeNonbonded | |
| updatePatchOrder(const std::vector< CudaLocalRecord > &data) | CudaComputeNonbonded | |
| v_vdwa | ComputeNonbondedUtil | static |
| v_vdwa_f | ComputeNonbondedUtil | static |
| v_vdwb | ComputeNonbondedUtil | static |
| v_vdwb_f | ComputeNonbondedUtil | static |
| vdw_switch_mode | ComputeNonbondedUtil | static |
| vdwa_table | ComputeNonbondedUtil | static |
| vdwb_table | ComputeNonbondedUtil | static |
| vdwEnergyIndex enum value | ComputeNonbondedUtil | |
| vdwEnergyIndex_s enum value | ComputeNonbondedUtil | |
| vdwEnergyIndex_ti_1 enum value | ComputeNonbondedUtil | |
| vdwEnergyIndex_ti_2 enum value | ComputeNonbondedUtil | |
| vdwForceSwitching | ComputeNonbondedUtil | static |
| VECTOR enum value | ComputeNonbondedUtil | |
| ~Compute() | Compute | virtual |
| ~ComputeNonbondedUtil() | ComputeNonbondedUtil | inline |
| ~CudaComputeNonbonded() | CudaComputeNonbonded | |
