| _hasNewAtoms | Patch | protected |
| addForceToMomentum(FullAtom *__restrict atom_arr, const Force *__restrict force_arr, const BigReal dt, int num_atoms) __attribute__((__noinline__)) | HomePatch | |
| addForceToMomentum3(FullAtom *__restrict atom_arr, const Force *__restrict force_arr1, const Force *__restrict force_arr2, const Force *__restrict force_arr3, const BigReal dt1, const BigReal dt2, const BigReal dt3, int num_atoms) __attribute__((__noinline__)) | HomePatch | |
| addRattleForce(const BigReal invdt, Tensor &wc) | HomePatch | |
| addVelocityToPosition(FullAtom *__restrict atom_arr, const BigReal dt, int num_atoms) __attribute__((__noinline__)) | HomePatch | |
| atomMapper | Patch | protected |
| avgPositionBox | Patch | protected |
| avgPositionBoxClosed(void) | Patch | |
| avgPositionComputeList | Patch | protected |
| avgPositionPtrBegin | Patch | protected |
| avgPositionPtrEnd | Patch | protected |
| bornRad | Patch | protected |
| bornRadBox | Patch | protected |
| bornRadBoxClosed(void) | Patch | |
| bornRadComputeList | Patch | protected |
| boxClosed(int) | HomePatch | protectedvirtual |
| boxesOpen | Patch | protected |
| buildRattleList() | HomePatch | |
| buildRattleList_SOA() | HomePatch | |
| buildSpanningTree(void) | HomePatch | |
| checkpoint(void) | HomePatch | |
| checkpoint_task | HomePatch | |
| checkpoints | HomePatch | |
| ComputeGlobal class | HomePatch | friend |
| computesSortedByPriority | Patch | protected |
| cudaAtomPtr | Patch | protected |
| dEdaSum | Patch | protected |
| dEdaSumBox | Patch | protected |
| dEdaSumBoxClosed(void) | Patch | |
| dEdaSumComputeList | Patch | protected |
| depositMigration(MigrateAtomsMsg *) | HomePatch | |
| dHdrPrefix | Patch | protected |
| dHdrPrefixBox | Patch | protected |
| dHdrPrefixBoxClosed(void) | Patch | |
| dHdrPrefixComputeList | Patch | protected |
| doAtomMigration() | HomePatch | protected |
| doGroupSizeCheck() | HomePatch | protected |
| doGroupSizeCheck_SOA() | HomePatch | protected |
| doMarginCheck() | HomePatch | protected |
| doMarginCheck_SOA() | HomePatch | protected |
| doPairlistCheck() | HomePatch | protected |
| exchange_dst | HomePatch | |
| exchange_msg | HomePatch | |
| exchange_req | HomePatch | |
| exchange_src | HomePatch | |
| exchangeAtoms(int scriptTask) | HomePatch | |
| exchangeCheckpoint(int scriptTask, int &bpc) | HomePatch | |
| f | Patch | protected |
| firstHoldableCompute | Patch | protected |
| flags | Patch | |
| forceBox | Patch | protected |
| forceBoxClosed(void) | Patch | |
| forceComputeList | Patch | protected |
| gbisComputeAfterP1() | HomePatch | |
| gbisComputeAfterP2() | HomePatch | |
| gbisP2Ready() | HomePatch | |
| gbisP3Ready() | HomePatch | |
| getAtomList() | HomePatch | inline |
| getCompAtomExtInfo() | Patch | inline |
| getCompAtomInfo() | Patch | inline |
| getCudaAtomList() | Patch | inline |
| getMax() | HomePatch | inline |
| getMin() | HomePatch | inline |
| getNumAtoms() const | Patch | inline |
| getNumComputes() const | Patch | inline |
| getNumFixedAtoms() const | Patch | inline |
| getPatchID() const | Patch | inline |
| gridForceIdxChecked | HomePatch | |
| hardWallDrude(const BigReal, Tensor *virial, SubmitReduction *) | HomePatch | |
| hasNewAtoms() | Patch | inline |
| inMigration | HomePatch | protected |
| intRad | Patch | protected |
| intRadBox | Patch | protected |
| intRadBoxClosed(void) | Patch | |
| intRadComputeList | Patch | protected |
| lattice | Patch | |
| lcpoType | Patch | protected |
| lcpoTypeBox | Patch | protected |
| lcpoTypeBoxClosed(void) | Patch | |
| lcpoTypeComputeList | Patch | protected |
| ldObjHandle | HomePatch | |
| loweAndersenFinish() | HomePatch | |
| loweAndersenVelocities() | HomePatch | |
| marginViolations | HomePatch | |
| minimize_rattle2(const BigReal, Tensor *virial, bool forces=false) | HomePatch | |
| mollyAverage() | HomePatch | |
| mollyMollify(Tensor *virial) | HomePatch | |
| msgbuf | HomePatch | protected |
| noconstList | HomePatch | |
| numAtoms | Patch | protected |
| numFixedAtoms | Patch | protected |
| numMlBuf | HomePatch | protected |
| p | Patch | protected |
| p_avg | Patch | protected |
| Patch(PatchID pd) | Patch | |
| patchID | Patch | protected |
| PatchMgr class | HomePatch | friend |
| pExt | Patch | protected |
| positionBox | Patch | protected |
| positionBoxClosed(void) | Patch | |
| positionComputeList | Patch | protected |
| positionsReady(int doMigration=0) | HomePatch | |
| Patch::positionsReady(int n=0, int startup=1) | Patch | |
| positionsReady_GPU(int doMigration=0, int startup=0) | HomePatch | |
| positionsReady_SOA(int doMigration=0) | HomePatch | |
| posNew | HomePatch | |
| psiFin | Patch | protected |
| psiSum | Patch | protected |
| psiSumBox | Patch | protected |
| psiSumBoxClosed(void) | Patch | |
| psiSumComputeList | Patch | protected |
| qmSwapAtoms() | HomePatch | |
| rattle1(const BigReal, Tensor *virial, SubmitReduction *) | HomePatch | |
| rattle1_SOA(const BigReal, Tensor *virial, SubmitReduction *) | HomePatch | |
| rattle1old(const BigReal, Tensor *virial, SubmitReduction *) | HomePatch | |
| rattle2(const BigReal, Tensor *virial) | HomePatch | |
| rattleList | HomePatch | |
| rattleListValid | HomePatch | |
| rattleListValid_SOA | HomePatch | |
| rattleParam | HomePatch | |
| receiveResult(ProxyGBISP1ResultMsg *msg) | HomePatch | |
| receiveResult(ProxyGBISP2ResultMsg *msg) | HomePatch | |
| receiveResults(ProxyResultVarsizeMsg *msg) | HomePatch | |
| receiveResults(ProxyResultMsg *msg) | HomePatch | |
| receiveResults(ProxyCombinedResultRawMsg *msg) | HomePatch | |
| recvCheckpointAck() | HomePatch | |
| recvCheckpointLoad(CheckpointAtomsMsg *msg) | HomePatch | |
| recvCheckpointReq(int task, const char *key, int replica, int pe) | HomePatch | |
| recvCheckpointStore(CheckpointAtomsMsg *msg) | HomePatch | |
| recvExchangeMsg(ExchangeAtomsMsg *msg) | HomePatch | |
| recvExchangeReq(int req) | HomePatch | |
| recvNodeAwareSpanningTree(ProxyNodeAwareSpanningTreeMsg *msg) | HomePatch | |
| recvSpanningTree(int *t, int n) | HomePatch | |
| registerAvgPositionPickup(Compute *cid) | Patch | |
| registerBornRadPickup(Compute *cid) | Patch | |
| registerDEdaSumDeposit(Compute *cid) | Patch | |
| registerDHdrPrefixPickup(Compute *cid) | Patch | |
| registerForceDeposit(Compute *cid) | Patch | |
| registerIntRadPickup(Compute *cid) | Patch | |
| registerLcpoTypePickup(Compute *cid) | Patch | |
| registerPositionPickup(Compute *cid) | Patch | |
| registerProxy(RegisterProxyMsg *) | HomePatch | |
| registerPsiSumDeposit(Compute *cid) | Patch | |
| registerVelocityPickup(Compute *cid) | Patch | |
| replaceForces(ExtForce *f) | HomePatch | |
| results | Patch | protected |
| revert(void) | HomePatch | |
| runSequencer(void) | HomePatch | |
| saveForce(const int ftag=Results::normal) | HomePatch | |
| sendNodeAwareSpanningTree() | HomePatch | |
| sendProxies() | HomePatch | |
| sendSpanningTree() | HomePatch | |
| Sequencer class | HomePatch | friend |
| SequencerCUDA class | HomePatch | friend |
| setGBISIntrinsicRadii() | HomePatch | |
| setLcpoType() | HomePatch | |
| setNumFixedAtoms(int numFixed) | Patch | inline |
| settleList | HomePatch | |
| submitLoadStats(int timestep) | HomePatch | |
| unregisterAvgPositionPickup(Compute *cid, Box< Patch, CompAtom > **const box) | Patch | |
| unregisterBornRadPickup(Compute *cid, Box< Patch, Real > **const box) | Patch | |
| unregisterDEdaSumDeposit(Compute *cid, Box< Patch, GBReal > **const box) | Patch | |
| unregisterDHdrPrefixPickup(Compute *cid, Box< Patch, Real > **const box) | Patch | |
| unregisterForceDeposit(Compute *cid, Box< Patch, Results > **const box) | Patch | |
| unregisterIntRadPickup(Compute *cid, Box< Patch, Real > **const box) | Patch | |
| unregisterLcpoTypePickup(Compute *cid, Box< Patch, int > **const box) | Patch | |
| unregisterPositionPickup(Compute *cid, Box< Patch, CompAtom > **const box) | Patch | |
| unregisterProxy(UnregisterProxyMsg *) | HomePatch | |
| unregisterPsiSumDeposit(Compute *cid, Box< Patch, GBReal > **const box) | Patch | |
| unregisterVelocityPickup(Compute *cid, Box< Patch, CompAtom > **const box) | Patch | |
| updateAtomBuffers() | HomePatch | |
| updateAtomCount(const int n, const int reallocate) | HomePatch | |
| useSequencer(Sequencer *sequencerPtr) | HomePatch | |
| v | Patch | protected |
| velNew | HomePatch | |
| velocityBox | Patch | protected |
| velocityBoxClosed(void) | Patch | |
| velocityComputeList | Patch | protected |
| velocityPtrBegin | Patch | protected |
| velocityPtrEnd | Patch | protected |
| ~HomePatch() | HomePatch | |
| ~Patch() | Patch | virtual |
