| _hasNewAtoms | Patch | protected |
| atomMapper | Patch | protected |
| avgPositionBox | Patch | protected |
| avgPositionBoxClosed(void) | Patch | |
| avgPositionComputeList | Patch | protected |
| avgPositionPtrBegin | Patch | protected |
| avgPositionPtrEnd | Patch | protected |
| bornRad | Patch | protected |
| bornRadBox | Patch | protected |
| bornRadBoxClosed(void) | Patch | |
| bornRadComputeList | Patch | protected |
| boxClosed(int) | ProxyPatch | protectedvirtual |
| boxesOpen | Patch | protected |
| child | Patch | protected |
| computesSortedByPriority | Patch | protected |
| cudaAtomPtr | Patch | protected |
| dEdaSum | Patch | protected |
| dEdaSumBox | Patch | protected |
| dEdaSumBoxClosed(void) | Patch | |
| dEdaSumComputeList | Patch | protected |
| depositCombinedResultMsg(ProxyCombinedResultMsg *) | ProxyPatch | |
| depositCombinedResultRawMsg(ProxyCombinedResultRawMsg *) | ProxyPatch | |
| dHdrPrefix | Patch | protected |
| dHdrPrefixBox | Patch | protected |
| dHdrPrefixBoxClosed(void) | Patch | |
| dHdrPrefixComputeList | Patch | protected |
| f | Patch | protected |
| firstHoldableCompute | Patch | protected |
| flags | Patch | |
| forceBox | Patch | protected |
| forceBoxClosed(void) | Patch | |
| forceComputeList | Patch | protected |
| gbisP2Ready() | Patch | |
| gbisP3Ready() | Patch | |
| getCompAtomExtInfo() | Patch | inline |
| getCompAtomInfo() | Patch | inline |
| getCudaAtomList() | Patch | inline |
| getNumAtoms() const | Patch | inline |
| getNumComputes() const | Patch | inline |
| getNumFixedAtoms() const | Patch | inline |
| getPatchID() const | Patch | inline |
| getSpanningTreeChild(int *) | ProxyPatch | |
| getSpanningTreeChildPtr() | ProxyPatch | inline |
| getSpanningTreeNChild(void) | ProxyPatch | inline |
| getSpanningTreeParent() | ProxyPatch | inline |
| hasNewAtoms() | Patch | inline |
| intRad | Patch | protected |
| intRadBox | Patch | protected |
| intRadBoxClosed(void) | Patch | |
| intRadComputeList | Patch | protected |
| lattice | Patch | |
| lcpoType | Patch | protected |
| lcpoTypeBox | Patch | protected |
| lcpoTypeBoxClosed(void) | Patch | |
| lcpoTypeComputeList | Patch | protected |
| nChild | Patch | protected |
| numAtoms | Patch | protected |
| numFixedAtoms | Patch | protected |
| p | Patch | protected |
| p_avg | Patch | protected |
| Patch(PatchID pd) | Patch | |
| patchID | Patch | protected |
| pExt | Patch | protected |
| positionBox | Patch | protected |
| positionBoxClosed(void) | Patch | |
| positionComputeList | Patch | protected |
| positionsReady(int n=0, int startup=1) | Patch | |
| ProxyPatch(PatchID pd) | ProxyPatch | |
| psiFin | Patch | protected |
| psiSum | Patch | protected |
| psiSumBox | Patch | protected |
| psiSumBoxClosed(void) | Patch | |
| psiSumComputeList | Patch | protected |
| receiveAll(ProxyDataMsg *) | ProxyPatch | |
| receiveData(ProxyDataMsg *) | ProxyPatch | |
| receiveData(ProxyGBISP2DataMsg *) | ProxyPatch | |
| receiveData(ProxyGBISP3DataMsg *) | ProxyPatch | |
| registerAvgPositionPickup(Compute *cid) | Patch | |
| registerBornRadPickup(Compute *cid) | Patch | |
| registerDEdaSumDeposit(Compute *cid) | Patch | |
| registerDHdrPrefixPickup(Compute *cid) | Patch | |
| registerForceDeposit(Compute *cid) | Patch | |
| registerIntRadPickup(Compute *cid) | Patch | |
| registerLcpoTypePickup(Compute *cid) | Patch | |
| registerPositionPickup(Compute *cid) | Patch | |
| registerPsiSumDeposit(Compute *cid) | Patch | |
| registerVelocityPickup(Compute *cid) | Patch | |
| results | Patch | protected |
| setNumFixedAtoms(int numFixed) | Patch | inline |
| setSpanningTree(int, int *, int) | ProxyPatch | |
| unregisterAvgPositionPickup(Compute *cid, Box< Patch, CompAtom > **const box) | Patch | |
| unregisterBornRadPickup(Compute *cid, Box< Patch, Real > **const box) | Patch | |
| unregisterDEdaSumDeposit(Compute *cid, Box< Patch, GBReal > **const box) | Patch | |
| unregisterDHdrPrefixPickup(Compute *cid, Box< Patch, Real > **const box) | Patch | |
| unregisterForceDeposit(Compute *cid, Box< Patch, Results > **const box) | Patch | |
| unregisterIntRadPickup(Compute *cid, Box< Patch, Real > **const box) | Patch | |
| unregisterLcpoTypePickup(Compute *cid, Box< Patch, int > **const box) | Patch | |
| unregisterPositionPickup(Compute *cid, Box< Patch, CompAtom > **const box) | Patch | |
| unregisterPsiSumDeposit(Compute *cid, Box< Patch, GBReal > **const box) | Patch | |
| unregisterVelocityPickup(Compute *cid, Box< Patch, CompAtom > **const box) | Patch | |
| v | Patch | protected |
| velocityBox | Patch | protected |
| velocityBoxClosed(void) | Patch | |
| velocityComputeList | Patch | protected |
| velocityPtrBegin | Patch | protected |
| velocityPtrEnd | Patch | protected |
| ~Patch() | Patch | virtual |
| ~ProxyPatch(void) | ProxyPatch | virtual |
