energy minimization

From: xiaojing gong (
Date: Sun Sep 25 2005 - 21:57:00 CDT

Dear all,
       When I want to do the energy minimization, I read the NAMD Users Guide, it provides two kinds of parameters to control the minimization, but I have seen an example for minimization before, it does not contain any parameters mentioned above, the protein is only fixed and RigidBond is used. I am confused.
Could any one give me some suggestions ?


This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:41:09 CST