Re: vmd-l: energy calculation in VMD

From: John Stone (
Date: Wed Mar 22 2006 - 16:48:08 CST

You might want to try the NAMD Energy plugin or plot energies from the
NAMD log files using either the standalone 'namdplot' or the VMD 'NAMD Plot'
extension. The two VMD features I mention are available in the test versions
of VMD 1.8.4:

  John Stone

On Wed, Mar 22, 2006 at 02:41:45PM -0800, lily jin wrote:
> Hi,
> I wander how I can calculate the energy for each frame in VMD. Please give some advice. thanks!
> Lily
> ---------------------------------
> New Yahoo! Messenger with Voice. Call regular phones from your PC for low, low rates.

NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email:                 Phone: 217-244-3349
  WWW:      Fax: 217-244-6078

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:41:47 CST