From: Moumita Maiti (m.moumita_at_gmail.com)
Date: Fri Jun 30 2006 - 04:26:18 CDT
Hi NAMD users,
I want to delete an unwanted atom before
building a psf and pdb files. I want to delete O2'
from a segemnt dn0. So I had used the syntax as follows:
segment dn0 {pdb ${dir}/1kx5/1kx5_dna_chain0.pdb}
coordpdb ${dir}/1kx5/1kx5_dna_chain0.pdb dn0
delatom dn0 ADE O2'
But it shows the error
"no segment dn0"
I think the definition of the segment is not accepted, but why not, I don't
understand as I hope I have defined
the segment by "dn0" with the following syntax:
"segment dn0 {pdb ${dir}/1kx5/1kx5_dna_chain0.pdb}"
Thank you,
moumita
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