extracting waters from DCD

From: Narender Singh Maan (nsmaan_at_gmail.com)
Date: Tue Aug 08 2006 - 14:04:04 CDT

Dear All,
I have a trajectory file for my simulation of a protein in a big water box.
Now to reduce the size i can extract and writeout the trajectory for 'just
the protein' from this system by using "catdcd" but my aim is to extract
some waters also (only those water molecules which are within 3.5 Ang. of
the protein surface...for each frame).Any suggestions would be of great

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