From: Thomas Evangelidis (tevang3_at_gmail.com)
Date: Thu Nov 22 2012 - 13:50:18 CST
Try also running:
./namd2 +setcpuaffinity +p2 +idlepoll +devices 0 input.conf
~Thomas
On 22 November 2012 21:25, Aron Broom <broomsday_at_gmail.com> wrote:
> Why didn't your locate find the library that comes with NAMD? In general
> that is the one you should give it, not sure that will solve your problems
> though.
>
> ~Aron
>
>
> On Thu, Nov 22, 2012 at 1:42 PM, flavio seixas <oivalf_nix_at_yahoo.com>wrote:
>
>> Hi, I am trying to run namd2 with cuda in a dualcore fedora14 x64, cuda
>> capable Nvidia GeForce GT430.
>>
>> I found the following error:
>>
>>
>> [root_at_perseus]# locate libcudart.so.4
>>
>> /usr/bin/libcudart.so.4
>> /usr/local/lib/vmd/libcudart.so.4
>> /usr/local/vmd-1.9.1/lib/redistrib/lib_LINUXAMD64/libcudart.so.4
>> /usr/sbin/libcudart.so.4
>>
>> [root_at_perseus]#
>> [root_at_perseus]# export
>> LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib/vmd/libcudart.so.4
>> [root_at_perseus]# ./namd2 +idlepoll +p2 input.conf > output.log &
>> [1] 4379
>> [root_at_perseus]# ./namd2: error while loading shared libraries:
>> libcudart.so.4: cannot open shared object file: No such file or directory
>>
>> [1]+ Exit 127 ./namd2 +idlepoll +p2 input.conf > output.log
>> [root_at_perseus]#
>>
>> Could someone tells me what is missing?
>>
>> Thanks for any help.
>>
>> Flavio
>>
>>
>
>
> --
> Aron Broom M.Sc
> PhD Student
> Department of Chemistry
> University of Waterloo
>
>
--
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang_at_pharm.uoa.gr
tevang3_at_gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/
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