TITLE: Primary/Secondary Scoring

EXECUTABLES TESTED:  
	dock6

FUNCTIONS TESTED:
	Output functions for primary and secondary scoring
    Primary --> Analyze --> Secondary
	
WALL CLOCK TIME:
	 26.07 secs

FILES USED:
	secondary1.dockin		#pirmary verbose output
	secondary2.dockin		#primary ranking and clustering (library)
	secondary3.dockin		#primary + secondary verbose output scoring multiple conformers
	secondary4.dockin		#primary + secondary ranking multiple conformers (library)
    secondary5.dockin       #primary + secondary ranking bestscoring conformer (library)
    secondary6.dockin       #primary + secondary clustering 
    secondary7.dockin       #primary + secondary with minimization 
	lig.mol2		#ligand structure file
	struct.sph		#receptor sphere file
	chem.defn		#chem parameter input file
	flex.defn		#flex atom definition file
	flex_drive.tbl		#flex torsional drive file
	vdw.defn		#vdw parameter file used to create grid

FILES GENERATED:
	XXX_orients.mol2	#orientations from input file
	XXX_conformers.mol2	#conformations from input file
	XXX_scored.mol2		#best scoring pose from input file	
