This directory contains a docking example that will demonstrate sphere
generation, grid creation, and rigid and flexible ligand docking and 
minimization.  The demo is meant to provide an idea of how the dock 
programs work.  The values selected for the example are customized 
for this case, and may not be the best values for all dockings.

Terry Lang 03/06

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script_demo             This script executes the various steps in the
                        demonstration.  The entire demonstration can 
								take a while, especially the grid generation step.

1_struc/                This directory contains receptor and ligand
                        coordinate files.

2_site/                 This directory contains sphere generation files.

3_grid/                 This directory contains grid generation files.

4_dock/                 This directory contains docking files.

script_clean            This script cleans up (removes) the various files
                        generated during the demonstration.

For more information about the steps involved in generating these files,
go to the tutorials located on the DOCK Web site at 
http://dock.compbio.ucsf.edu/DOCK_5/index.htm. 


