The files for the Aquaporins tutorial are organized in the following fashion:

		       _____aquaporin.vmd
		      |
		      |_____aqp.multiseq
		      |
		      |_____blast-install
		      |
		      |_____swiss-prot.tar.gz
		      | 
                      |
		      |
		      |		 ____1fqy.pdb
aqp-tutorial-files ---		|
		      |		|____1j4n.pdb
		      |		|
		      |_____PDB-|____1lda.pdb
				|
				|____1rc2.pdb
				|
				|____2f2b.pdb
				|
				|____glpf-tetramer.pdb

aquaporin.vmd - is a saved VMD state of an aquaporin monomer

aqp.multiseq - is a saved VMD Multiseq session of aquaporin sequences

blast-install - is a directory of the blast installation files for different platforms. It has the following files for each platform:

blast-2.2.13-ia32-win32.exe	  	for windows
blast-2.2.13-linux.tar.gz 	 	for linux
blast-2.2.13-ppc32-macosx.tar.gz	for Mac OS X  
blast-2.2.13-sparc64-solaris.tar.gz	for unix

swiss-prot.tar.gz - is a file for the swiss-prot database

PDB - is a directory of the following PDB files

1fqy.pdb - PDB file of Human AQP1
1j4n.pdb - PDB file of AQP1 bovine 
1lda.pdb - PDB file of E.Coli GlpF
1rc2.pdb - PDB file of E.coli AQPz
2f2b.pdb - PDB file of Archaea AqpM
glpf-tetramer.pdb - PDB file generated in house of a GlpF tetramer
