File generated by QwikMD (version 1.1) on 11:15-CEST, 07/29/2016

Machine name: champaign.fritz.box (Linux).

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QwikMD text log file. In this file one can find the steps taken to prepare,
perform and analyze the MD simulation. The file is divided in 3 major sections:

	"Structure Preparation" lists the operations performed to prepare 
	the structure for simulation, such as atom deletion and residue renaming;

	"MD Protocols" lists the MD simulation protocols prepared/performed 
	and their specific parameters like temperature, and simulation time;
 
	"MD Analysis" list the analysis performed to the trajectory generated
	by the execution of the previous MD protocols.                              
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============================== Structure Preparation ===============================

The structure rpn11_merged.pdb was loaded from a local folder:
	/home/max/Dropbox/tutorial/3.modelfit.
The original structure can be found at /home/max/Dropbox/tutorial/3.modelfit/rpn11_fit/setup/rpn11_merged_original.pdb


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================================== MD Analysis ====================================