NAMD
Classes | Macros | Typedefs
NamdTypes.h File Reference
#include <cuda_runtime.h>
#include "common.h"
#include "Vector.h"
#include "CudaRecord.h"
#include "ResizeArray.h"

Go to the source code of this file.

Classes

struct  Transform
 
struct  CompAtom
 
struct  CompAtomExt
 
struct  CompAtomExtCopy
 
struct  FullAtom
 
struct  InputAtom
 
struct  LocalID
 
struct  ExtForce
 
struct  __sort_entry
 
struct  proxyTreeNode
 
struct  PatchDataSOA
 

Macros

#define NAMD_ATOM_ID_MASK   0x3FFFFFFFu
 
#define NAMD_ATOM_FIXED_MASK   0x40000000u
 
#define NAMD_GROUP_FIXED_MASK   0x80000000u
 

Typedefs

typedef Vector Position
 
typedef Vector Velocity
 
typedef Vector Force
 
typedef int32 AtomID
 
typedef int32 AtomType
 
typedef float Mass
 
typedef float Charge
 
typedef float DispCoef
 
typedef double Coordinate
 
typedef int32 SigIndex
 
typedef int32 AtomSigID
 
typedef int32 ExclSigID
 
typedef ResizeArray< CudaAtom > CudaAtomList
 
typedef ResizeArray< CompAtom > CompAtomList
 
typedef ResizeArray< CompAtomExt > CompAtomExtList
 
typedef ResizeArray< FullAtom > FullAtomList
 
typedef ResizeArray< InputAtom > InputAtomList
 
typedef ResizeArray< Position > PositionList
 
typedef ResizeArray< Velocity > VelocityList
 
typedef ResizeArray< Force > ForceList
 
typedef ResizeArray< Transform > TransformList
 
typedef ResizeArray< AtomID > AtomIDList
 
typedef ResizeArray< BigReal > BigRealList
 
typedef ResizeArray< Real > RealList
 
typedef float GBReal
 
typedef ResizeArray< GBReal > GBRealList
 
typedef ResizeArray< int > IntList
 
typedef int32 PatchID
 
typedef int32 ComputeID
 
typedef int32 NodeID
 
typedef ResizeArray< PatchID > PatchIDList
 
typedef ResizeArray< Patch * > PatchList
 
typedef ResizeArray< Compute * > ComputeList
 
typedef ResizeArray< NodeID > NodeIDList
 
typedef struct __sort_entry SortEntry
 
typedef ResizeArray< proxyTreeNode > proxyTreeNodeList
 

Macro Definition Documentation

◆ NAMD_ATOM_FIXED_MASK

#define NAMD_ATOM_FIXED_MASK   0x40000000u

Definition at line 145 of file NamdTypes.h.

Referenced by HomePatch::positionsReady_SOA().

◆ NAMD_ATOM_ID_MASK

#define NAMD_ATOM_ID_MASK   0x3FFFFFFFu

Definition at line 144 of file NamdTypes.h.

◆ NAMD_GROUP_FIXED_MASK

#define NAMD_GROUP_FIXED_MASK   0x80000000u

Definition at line 146 of file NamdTypes.h.

Referenced by HomePatch::positionsReady_SOA().

Typedef Documentation

◆ AtomID

typedef int32 AtomID

Definition at line 35 of file NamdTypes.h.

◆ AtomIDList

typedef ResizeArray<AtomID> AtomIDList

Definition at line 280 of file NamdTypes.h.

◆ AtomSigID

typedef int32 AtomSigID

Definition at line 139 of file NamdTypes.h.

◆ AtomType

typedef int32 AtomType

Definition at line 36 of file NamdTypes.h.

◆ BigRealList

typedef ResizeArray<BigReal> BigRealList

Definition at line 281 of file NamdTypes.h.

◆ Charge

typedef float Charge

Definition at line 38 of file NamdTypes.h.

◆ CompAtomExtList

typedef ResizeArray<CompAtomExt> CompAtomExtList

Definition at line 269 of file NamdTypes.h.

◆ CompAtomList

typedef ResizeArray<CompAtom> CompAtomList

Definition at line 268 of file NamdTypes.h.

◆ ComputeID

typedef int32 ComputeID

Definition at line 288 of file NamdTypes.h.

◆ ComputeList

typedef ResizeArray<Compute *> ComputeList

Definition at line 294 of file NamdTypes.h.

◆ Coordinate

typedef double Coordinate

Definition at line 41 of file NamdTypes.h.

◆ CudaAtomList

typedef ResizeArray<CudaAtom> CudaAtomList

Definition at line 267 of file NamdTypes.h.

◆ DispCoef

typedef float DispCoef

Definition at line 39 of file NamdTypes.h.

◆ ExclSigID

typedef int32 ExclSigID

Definition at line 140 of file NamdTypes.h.

◆ Force

typedef Vector Force

Definition at line 32 of file NamdTypes.h.

◆ ForceList

typedef ResizeArray<Force> ForceList

Definition at line 277 of file NamdTypes.h.

◆ FullAtomList

typedef ResizeArray<FullAtom> FullAtomList

Definition at line 273 of file NamdTypes.h.

◆ GBReal

typedef float GBReal

Definition at line 283 of file NamdTypes.h.

◆ GBRealList

typedef ResizeArray<GBReal> GBRealList

Definition at line 284 of file NamdTypes.h.

◆ InputAtomList

typedef ResizeArray<InputAtom> InputAtomList

Definition at line 274 of file NamdTypes.h.

◆ IntList

typedef ResizeArray<int> IntList

Definition at line 285 of file NamdTypes.h.

◆ Mass

typedef float Mass

Definition at line 37 of file NamdTypes.h.

◆ NodeID

typedef int32 NodeID

Definition at line 289 of file NamdTypes.h.

◆ NodeIDList

typedef ResizeArray<NodeID> NodeIDList

Definition at line 303 of file NamdTypes.h.

◆ PatchID

typedef int32 PatchID

Definition at line 287 of file NamdTypes.h.

◆ PatchIDList

typedef ResizeArray<PatchID> PatchIDList

Definition at line 291 of file NamdTypes.h.

◆ PatchList

typedef ResizeArray<Patch *> PatchList

Definition at line 292 of file NamdTypes.h.

◆ Position

typedef Vector Position

Definition at line 24 of file NamdTypes.h.

◆ PositionList

typedef ResizeArray<Position> PositionList

Definition at line 275 of file NamdTypes.h.

◆ proxyTreeNodeList

typedef ResizeArray<proxyTreeNode> proxyTreeNodeList

Definition at line 370 of file NamdTypes.h.

◆ RealList

typedef ResizeArray<Real> RealList

Definition at line 282 of file NamdTypes.h.

◆ SigIndex

typedef int32 SigIndex

Definition at line 138 of file NamdTypes.h.

◆ SortEntry

typedef struct __sort_entry SortEntry

◆ TransformList

typedef ResizeArray<Transform> TransformList

Definition at line 278 of file NamdTypes.h.

◆ Velocity

typedef Vector Velocity

Definition at line 27 of file NamdTypes.h.

◆ VelocityList

typedef ResizeArray<Velocity> VelocityList

Definition at line 276 of file NamdTypes.h.

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