VND - Visual Neuronal Dynamics

VND is a neuronal visualization program for displaying, animating, and analyzing SONATA format neural models using 3-D graphics and built-in scripting. VND supports computers running Linux, is distributed free of charge, and includes source code.
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Gallery

Award winning image, annual NIH BRAIN Initiative "Show us your brains", Mouse V1 model with VND.

VND visualization of 300 cell model with high definition ambient occlusion effects.

Example visualization of 300 cell model connectivity using VND selection language.

Example visualization of synapse positions in single cell model.

VND visualization of Mouse V1 model. Animation of spike activity.

Screencast of VND animation of compartment timeseries data.

Breaking News

Model of Mouse V1 with a Neuropixels Probe

Attendees of the 2025 Allen Institute Modeling Software Workshop

The Allen Institute Modeling Software Workshop, Seattle, July 28-30, 2025 Recap
In July 2025, we hosted the 4th Annual Modeling Software Workshop at the Allen Institute in Seattle, Washington, where attendees explored the latest features of BMTK, SONATA, and VND. Thanks to all who joined us for making it such a vibrant, engaging event!
View the workshop videos here! See the tutorials here!
Upcoming: Allen Institute Modeling Software Workshop, Seattle, July 20 - 22, 2026

Example VND Test Data Sets

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NAMD

VMD

GPU Computing

Lattice Microbes

Atomic Resolution Brownian Dynamics

MDFF

QwikMD

VND (Neuronal)

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