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From: Timothy Isgro (timisgro_at_ks.uiuc.edu)
Date: Fri Mar 16 2007 - 14:49:43 CDT
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- In reply to: saravana: "hydrophobic part of the solvent accessible surface area -request"
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Hi Saravana,
You can use VMD's "measure sasa" command to do this, using it's
restrict option. Type "measure" at the TkCon to see the options you
must specify. You should issue a command of the form "measure sasa
1.4 $entire_molecule -restrict $hydrophobic_part".
This VMD mailing list thread discusses the command:
http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/4700.html
-Tim
On Mar 5, 2007, at 10:10 PM, saravana wrote:
> hellow all
>
>
> As i know there is tool availble for solvent accessible surface area
>
> could any body tellme how to calculate
>
> hydrophobic part of the solvent accessible surface area
>
> is it possible through vmd
>
>
> thank you very much
>
> regs
>
> saravana
>
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