Tutorial-l Mailing List
From: JC Gumbart (gumbart_at_ks.uiuc.edu)
Date: Thu Mar 13 2008 - 15:16:28 CDT
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You can do both of these in VMD using the "measure" command. Check
the User's Guide for more specifics: http://www.ks.uiuc.edu/Research/
vmd/current/docs.html (search, for example, SASA).
JC
On Mar 12, 2008, at 10:47 AM, Seah Harold wrote:
> Hi i would like to enquire how to get a plot of radius of gyration
> of ubiquitin against time, change of solvent accessible surface area
> (SASA) of ubiquitin with time?? Is it through namd plot?
>
>
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