Tutorial-l Mailing List

From: Bruno Rodrigues (bbrodrigues_at_gmail.com)
Date: Tue Feb 01 2011 - 05:28:53 CST

you probably mistyped molId, because its actually molid (molecule id).

Try it and see what happens.

On 2/1/11, Chris Harrison <charris5_at_gmail.com> wrote:
> Did you load the molecule?
>
>
> Best,
> Chris
>
>
> --
> Chris Harrison, Ph.D.
> Theoretical and Computational Biophysics Group
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
>
> char_at_ks.uiuc.edu Voice: 217-244-1733
> http://www.ks.uiuc.edu/~char Fax: 217-244-6078
>
>
> "Joseph R. Vella" <jovella_at_eden.rutgers.edu> writes:
>> Date: Mon, 31 Jan 2011 23:18:28 -0500 (EST)
>> From: "Joseph R. Vella" <jovella_at_eden.rutgers.edu>
>> To: tutorial-l_at_ks.uiuc.edu
>> Subject: tutorial-l: Problem with NAMD Ubiquitin Tutorial Step4
>> X-Mailer: uPortal WEB email client 2.10
>>
>> Hi, I'm a new user.
>> When going through the tutorial I got to the step where to type set
>> ubq[atomselect top protein] in the VMD TkConsole. I made sure I was in
>> the 1-1-build directory but I got the error There is no 'top' molecule in
>> atomselect's 'molId'. Can you help me out?
>>
>> Thanks,
>>
>> Joe Vella
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-- 
-- 
Bruno Barbosa Rodrigues
PhD Student - Physics Department
Universidade Federal de Minas Gerais - UFMG
Belo Horizonte - Brazil
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