VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jan 14 2010 - 17:11:56 CST

Irene,
  Thanks for pointing this out. I'll get the plugin documentation
links updated tonight. You can find all of the relevant APBS info
at the links below.

Main ABPS page:
  http://www.poissonboltzmann.org/apbs/

Tutorials:
  http://apbs.wustl.edu/MediaWiki/index.php/APBS_examples

Cheers,
  John

On Thu, Jan 14, 2010 at 01:01:14PM -1000, Irene Newhouse wrote:
> The APBS links on the APBS plugin page are broken. I'm
> particularly feeling the lack of the link to the tutorial page. I've found
> various information that's helped me fill in the input data needed by the
> "ELEC values" window. But I still don't know how to do "vacc sphere
> density" -- it doesn't seem to be a term native to the APBS manuals I
> managed to find online. How about "mobile ions"? Is there by any chance a
> worked tutorial example using the VMD plugin somewhere?
>
> Thanks!
> Irene Newhouse
>
> ----------------------------------------------------------------------
>
> Hotmail: Powerful Free email with security by Microsoft. Get it now. 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078