VMD-L Mailing List
From: Gregorio Alanislobato (gregorio.alanislobato_at_kaust.edu.sa)
Date: Thu Aug 05 2010 - 14:24:56 CDT
- Next message: John Stone: "Re: upgrading vmd's nvidia component"
- Previous message: Nicholas Musolino: "Re: NAMD energy plugin"
- Next in thread: Ajasja Ljubetič: "Re: Inserting amino acids to a protein"
- Reply: Ajasja Ljubetič: "Re: Inserting amino acids to a protein"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
Say that I have a protein whose amino acid sequence is ABCD and I want to
insert Asparagines between B and C (4) and to the end (2), so that I will
end up with a protein with sequence AB*NNNN*CD*NN. *Is there any easy way I
can do this in VMD? What I have is a PDB file with half of the protein
folded (which would be AB) and the other half denatured (CD). I'm ran a
simulation without insertions and the protein folded just as I wanted, now I
want to run a simulations with the insertions (Asparagines runs) and I'm
expecting a diferent folding.
Regards,
-- Gregorio Alans Lobato, BSc 4700 KAUST Mail Box: 1899 Thuwal 239556900, KSA Student ID: 100037943 Badge #: 101969 Mobile Phone: +966-564-75-14-14 e-mail: gregorio.alanislobato_at_kaust.edu.sa
- Next message: John Stone: "Re: upgrading vmd's nvidia component"
- Previous message: Nicholas Musolino: "Re: NAMD energy plugin"
- Next in thread: Ajasja Ljubetič: "Re: Inserting amino acids to a protein"
- Reply: Ajasja Ljubetič: "Re: Inserting amino acids to a protein"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]