VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Mar 09 2011 - 00:19:45 CST
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Hi,
Did you load any atom coordinates, or only the topology?
I suspect that the error will go away if you load coordinates as well.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Wed, Mar 09, 2011 at 12:11:59AM -0600, vani panguluri wrote:
> Hi all,
> while converting the amber topology file .prmtop to psf i am getting an
> error anybody can help me
> >Main< (apocynin1) 12 % mol new pdb1k4u_apo11.prmtop waitfor all
> 3
> >Main< (apocynin1) 13 % animate dup 0
> >Main< (apocynin1) 14 % set sel [atomselect top all]
> atomselect1
> >Main< (apocynin1) 15 % $sel writepsf pdb1k4u_apo11.psf
> atomsel: frame -1 out of range for molecule 3
> Thanks & Regards,
> Vani
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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