VMD-L Mailing List
From: lecan (lecan_at_ibt.unam.mx)
Date: Sun Feb 12 2012 - 21:05:15 CST
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Hi everybody,
I'm trying to ionize a protein-DNA system with the plugin Meadionize in
VMD with the parameter par_all27_prot_na.prm. It runs well at first, but
then it stops with this last lines:
unknown residue type CLA
unknown residue type CLA
Info: generating structure...
unknown residue type SOD
ERROR: failed on end of segment
MOLECULE DESTROYED BY FATAL ERROR! Use resetpsf to start over.
This failure occurs when Meadionize tries to make the ION segment. Does
anybody know what could be the problem? I checked out the
par_all27_prot_na.prm and it has the SOD and CLA ions defined.
best regards,
Luis L.
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