VMD-L Mailing List
From: mohammad agha (mra_bu_at_yahoo.com)
Date: Thu May 10 2012 - 01:56:22 CDT
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Dear Mark,
Thank you very much from your help.
I made
mkdir /home/sara/bin
mkdir /home/sara/lib
mkdir /home/sara/lib/vmd
and then changed the configure script as:# Directory where VMD startup script is installed, should be in users' paths.
$install_bin_dir="/home/sara/bin";
# Directory where VMD files and executables are installed
$install_library_dir="/home/sara/lib/vmd$install_name";
my unpacked vmd folder is in sara folder and did ./configure but wrote the same previous warning:
./configure: line 13: =: command not found
./configure: line 16: =/home/linux/bin: No such file or directory
./configure: line 19: =/home/linux/lib/vmd: No such file or directory
./configure: line 23: syntax error near unexpected token `{'
./configure: line 23: `if ($ENV{VMDINSTALLNAME}) {'
I don't know what should I do?!
Best Regards
Sara
________________________________
From: Mark Cunningham <cunningham_at_utpa.edu>
To: "'mra_bu_at_yahoo.com'" <mra_bu_at_yahoo.com>
Sent: Thursday, May 10, 2012 12:36 AM
Subject: FW: vmd-l: flashing the VMD
Sara:
If you are not performing an installation of VMD for other users, then
just install it in your own directories. Create two directories:
mkdir /home/sara/bin
mkdir /home/sara/lib
and a subdirectory:
mkdir /home/sara/lib/vmd
Let VMD know what you are doing:
setenv VMDINSTALLBINDIR /home/sara/bin
setenv VMDINSTALLLIBRARYDIR /home/sara/lib/vmd
or, if you are using the bash shell,
export VMDINSTALLBINDIR=/home/sara/bin
export VMDINSTALLLIBRARYDIR=/home/sara/lib/vmd
Go to the directory where you have unpacked VMD.
./configure
cd src
make install
This will copy the requisite files to your directories.
In your .login or .tcshrc file, make sure that you have added
the /home/sara/bin directory to your path, or define an alias:
alias vmd /home/sara/bin/vmd
This will spare you having to edit the configure file.
Putting things in /usr/local is not such a great idea. Any time you
upgrade your system, the /usr partition can get overwritten. You’ll
have to reinstall VMD again and again. The /home partition is not
generally touched in an upgrade.
Mark Cunningham
From:owner-vmd-l_at_ks.uiuc.edu [mailto:owner-vmd-l_at_ks.uiuc.edu] On Behalf Of mohammad agha
Sent: Wednesday, May 09, 2012 11:16 AM
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: flashing the VMD
Dear Wang,
Thank you very much from your help, but I have no one to help me.
Best Regards
Sara
________________________________
From:Wang Yi <dexterwy_at_gmail.com>
To: mohammad agha <mra_bu_at_yahoo.com>
Sent: Wednesday, May 9, 2012 8:37 PM
Subject: Re: vmd-l: flashing the VMD
Hi there,
To be honest, I think the best way to get help is to find someone around you that is an expert in Linux, or at least have decent experience with the Linux system. It is quite obvious your experience with the Linux system is insufficient. The issues you have are more related to basic uses of the linux system, than to specific VMD uses. So someone around you that really knows how to work with Linux or Mac OS can help you.
Best,
___________________________
Yi (Yves) Wang
Duke University
On 2012-5-9, at 上午11:07, mohammad agha wrote:
Dear Dr. Kohlmeyer
I changed the version of VMD to LINUX PPC64 Text-mode (Linux PowerPC (64-bit) Text-mode) (VERSION1.9.1)and I installed this one before true and without warning but now, it give me this warning:
./configure: line 13: =: command not found
./configure: line 16: =/usr/local/bin: No such file or directory
./configure: line 19: =/usr/local/lib/: No such file or directory
./configure: line 23: syntax error near unexpected token `{'
./configure: line 23: `if ($ENV{VMDINSTALLNAME}) {'
Idon't know cause of it, may I ask you to help me, Please?
Best Regards
Sara
From:Axel Kohlmeyer <akohlmey_at_gmail.com>
To: mohammad agha <mra_bu_at_yahoo.com>
Cc: "vmd-l_at_ks.uiuc.edu" <vmd-l_at_ks.uiuc.edu>
Sent: Wednesday, May 9, 2012 1:56 AM
Subject: Re: vmd-l: flashing the VMD
On Tue, May 8, 2012 at 3:52 PM, mohammad agha <mra_bu_at_yahoo.com> wrote:
> Dear Dr. Kohlmeyer
>
> Thank you very much from your help.
> My system is 64bit and I am trying to install a 64bit version of VMD.
but did you download the correct 64-bit version?
since you seem to make your life needlessly
miserable by installing an obsolete version of
VMD, you have to consider that at this time,
VMD would ship in two 64-bit variants, one for
Itanium processors (may they rest in peace)
and one for it x86_64 processors.
my appraisal of the situation remains, that
you most likely are trying to install a package
for the wrong CPU architecture.
axel.
> Best Regards
> Sara
--
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com http://goo.gl/1wk0
College of Science and Technology
Temple University, Philadelphia PA, USA.
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