VMD-L Mailing List
From: Prof. Eddie (eackad_at_siue.edu)
Date: Tue May 14 2013 - 11:12:26 CDT
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Hi all,
Has anyone written a Dynamic cross correlation algorithm for vmd? It does
not seem to have one and I can't find any on the web. I thought I'd ask
before writing my own.
I'd like a measure of how correlated the motion of one residue is compared
with every other residue.
I think what I'm looking specifically is a function that could (for each
frame or average over all time frames) calculate C_ij =
<r_i*r_j>/sqrt[<r_i^2><r_i^2> ].
Thanks,
Eddie
-- _________________________________________________________ Edward Ackad, Ph.D <http://www.siue.edu/%7Eeackad> Assistant Professor of Physics Computational Nanophotonics Southern Illinois University Edwardsville (618) 650-2390
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