VMD-L Mailing List
From: Rejwan (rejwan_88_at_yahoo.com)
Date: Mon Jun 17 2013 - 10:34:32 CDT
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Hi,
I have a protein embeded in POPC membrane. The membrane has been built by VMD membrane plug-in. I want to make topology in Amber using LEAP. However, the VMD POPC lipid residues have incompatibility with Amber/Leap lipid residue naming. I am using lipid11 forcefield in Amber. Is there any script available for making compatible VMD POPC in Leap/Amber ? Thank you.
Rejwan Ali
Mount Sinai
- Next message: Alex Richards: "Atom Selection & List Generation"
- Previous message: manikanthan bhavaraju: "Generating .top and .crd using VMD"
- In reply to: John Stone: "Re: color problem with tachyon"
- Next in thread: Rejwan: "writing PDB"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]