VMD-L Mailing List
From: Björn Forsberg (bjorn.forsberg_at_scilifelab.se)
Date: Thu Oct 09 2014 - 07:50:41 CDT
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- In reply to: Devanand T: "How to remove particular residues and then view "ramachandran plot" in VMD"
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Simply specify
"not resname GLY"
in the selection in the ramaplot GUI. You may need to press enter or
reselect the molecule for it to take effect. A nice way to find out the
selection options is to open the "representations" dialogue and click
keywords in the selection tab; the possible values are then shown to the
right.
Cheers,
/ Björn
-- Bjoern O. Forsberg bjorn.forsberg_at_scilifelab.se <mailto:bjorn.forsberg_at_scilifelab.se> PhD student in Biophysics/Bioinformatics Theoretical & Computational Biophysics Lab Science for Life Laboratory, Solna, Sweden On 10/09/2014 11:44 AM, Devanand T wrote: > Dear all, > I used ramaplot plugin to view ramachandran plot of 1UBQ > protein. Now using GUI (no tcl) I wanted to view the ramachandran plot > of 1UBQ with no GLYCINEs. How to do that? > > TIA > > -- > regards, > /Devanand T > / > /JRF (Computational Biology) @ IMSc, Chennai/ > > > >
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- In reply to: Devanand T: "How to remove particular residues and then view "ramachandran plot" in VMD"
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