VMD-L Mailing List
From: Chitrak Gupta (chgupta_at_mix.wvu.edu)
Date: Thu May 05 2016 - 16:25:20 CDT
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Hi everyone,
Is there a way to find intermolecular salt bridges in VMD? From what I
understand, the plugin only does intramolecular, i.e. looks for donor and
acceptor in the same atom selection. Is it possible to look for donors and
acceptors in different atomselection?
Specifically, I want to find salt bridges between acidic residues and
choline N (from POPC lipid) and between basic residues and phosphate
oxygens (lipid headgroup).
Regards,
Chitrak.
- Next message: Roshan Shrestha: "Unable to create psf"
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- Next in thread: John Stone: "Re: intermolecular salt bridge"
- Reply: John Stone: "Re: intermolecular salt bridge"
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