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From: Jake . (opus128_at_hotmail.com)
Date: Wed Dec 29 2004 - 14:16:10 CST
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I'm relatively new to doing anything more fancy with VMD other than the
basic molecular representations. I'm trying to find a way to draw several
cylinders which are in a specific orientation throughout the time course of
my simulation. Part of the problem is that only one end point exists, the
other needs to be at a 90 degree angle to one of the chemical bonds, so
essentially extending out into space.
Here's the basic idea, In my system atoms C and N are bonded, but I want to
draw a cylinder at 90 degrees to that bond, extending out from the C-atom.
Is this even possible?
Any suggestions would be great, thanks all.
Jake
C-N
to be re-drawn like this:
|
C-N
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