VMD-L Mailing List
From: Luis Gracia (lug2002_at_med.cornell.edu)
Date: Mon Apr 25 2005 - 19:29:21 CDT
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Simon Whitehead said the following on 04/25/05 07:17:
> Hi everyone,
>
> Firstly, thanks for the help in loading my amber MD files into VMD!
> My 1st 500ps simulation has just completed so am keen to start
> analaysing the data but have been unable to get the RMSD tool to
> work. I have loaded a PARM file plus a coordinate file (crdbox)
> containing coordinates for the entire 500ps dynamics simulation but
> am not sure why i cannot run the tool and calculate the RMSD values
> over this time period. I would appreciate your help on this matter.
>
> Many thanks
>
> Simon Whitehead
Hi Simon,
which is exactly the problem? I guess we need some more info...
Best,
Luis
-- Luis Gracia, PhD Department of Physiology & Biophysics Weill Medical College of Cornell University 1300 York Avenue, Box 75 New York, NY 10021 Tel: (212) 746-6375 Fax: (212) 746-8690 lug2002_at_med.cornell.edu
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