VMD-L Mailing List

From: genie lfs (lfs.use_at_gmail.com)
Date: Thu May 18 2006 - 06:12:53 CDT

hello all

i am trying to study rna-protein interactions.

i would like to know how to find rmsf of single residues ? the residue
rmsd seems to have a bug and points to rms calculator?

and is there any way i can plot rmsd changes along time steps instead
of frames ( tried it but did not get it).

and i want to know the role played by enviornment(water and ions). is
there any tool which can give me the effect of enviornment on the
interactions between rna and protein?

thanking you.
santhu