VMD-L Mailing List
From: Vineet Pande (pande.vin_at_gmail.com)
Date: Sun Jun 04 2006 - 09:53:18 CDT
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Hi,
Now I notice that if I load the same trajectoty [but] without solvent
(solvent removed already from a CHARMM trajectory), VMD shows the display of
solute correctly. Still its strange that display is incomplete with a
trajectory containing solvent.
Vineet,
--- Vineet Pande, Ph.D. Karolinska Institute, Stockholm On 6/3/06, Vineet Pande <pande.vin_at_gmail.com> wrote: > > Yes. even if use "nucleic not solvent" or "all not solvent" selection > while displaying in *default display*; VMD does not show the molecule > completely. > > Vineet > > --- > Vineet Pande, Ph.D. > Karolinska Institute, Stockholm > > > On 6/2/06, Leonardo G. Trabuco <ltrabuco_at_ks.uiuc.edu> wrote: > > > > On Fri, Jun 02, 2006 at 04:17:51PM +0200, Vineet Pande wrote: > > > Hi, > > > I am using VMD for WIN32, version 1.8.4b10 to display a simple CHARMM > > > trajectory of a nucleic acid duplex. However, in the graphics, I can't > > see > > > one of the terminal nucleotides in both the strands; the MD movie runs > > fine > > > however. What could be the problem? > > > > Are you using the keyword 'nucleic' in your atom selection? Which > > representation are you using? > > > > Leo > > > > -- > > Leonardo Giantini Trabuco > > Ph.D. candidate > > Center for Biophysics and Computational Biology > > University of Illinois at Urbana-Champaign > > > >
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