Tutorial-l Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Thu May 14 2009 - 07:31:41 CDT

Hi Anna,
could you post, say, the 20 lines in the logfile immediately before what
you've sent? The actual error that is being reported should be somewhere
in there.
Thanks,
Peter

Anna Dejardin wrote:
> Hi,
>
> I'm just trying to work through the Basics of NAMD tutorial. I have
> attempted to run the simulations of Ubiquitin in a water sphere and in a
> water box but both times the simulation has been aborted and this error
> message returned:
>
> ------------- Processor 0 Exiting: Called CmiAbort ------------
> Reason: FATAL ERROR: ERROR(S) IN THE CONFIGURATION FILE
>
> [0] MPI Abort by user Aborting program !
> [0] Aborting program!
>
>
> I have had a look at the other threads relating to this error message in
> the mailing list, and have tried all of the things that the mac user who
> encountered the problem previously was told to try. I am also calling
> both namd and the config file using their full paths. I am however using
> a Linux machine.
> Do you have any idea what's going on and any advice on what I can do?
>
> Thanks
>
> Anna Dejardin
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