Lectures and Talks
2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | pre-2000
Below are lectures, talks, and other presentations given by TCB faculty and other group members in meetings and conferences locally and around the world.
Klaus Schulten Laxmikant Kale Emad Tajkhorshid Other TCB Members
February 2005, Long Beach, CA, Biophysical Society 2005 Annual Meeting
Lecture: "Molecular Dynamics Study of Membrane Channel Gating"
March 2005, Urbana, IL, Biophysics Recruiting Weekend
Lecture: "Modeling Cellular Processes"
April 2005, West Lafayette, IN, Purdue University, 100 Years of Physics Accomplishments - "Grande Finale" Symposium
Lecture: "The Future of Biological Physics"
April 2005, Chicago, IL, University of Chicago, Department of Biochemistry and Molecular Biology, Departmental Seminar
Lecture: “Towards Understanding Membrane Channels”
April 2005, Atlanta, GA, Georgia Tech, Institute for Bioengineering and Bioscience, Frontiers in Macromolecular Simulations
Lecture: “Molecular Modeling as a Tool in Bioengineering”
April 2005, Bethesda, MD, National Institute of Health, Martin Karplus Symposium
Lecture: "From 3 to 3,000,000 Atoms"
May 2005, Tahoe City, CA, Hands-On Workshop on Computational Biophysics
Lecture: "Introduction to Protein Structure"
Lecture: "Statistical Mechanics of Proteins"
June 2005, Chicago, IL, Hands-On Workshop on Computational Biophysics
Lecture: "Introduction to Protein Structure"
Lecture: "Statistical Mechanics of Proteins"
June 2005, San Francisco, CA, Hands-On Workshop on Computational Biophysics
Lecture: "Introduction to Protein Structure"
Lecture: "Statistical Mechanics of Proteins"
June 2005, Irvine, CA, University of California, Physics Department
Lecture: "The Physics of Biological Channels"
June 2005, Bethesda, MD, 2005 Protein Interest Group
Lecture: "Computational Studies of Membrane Channels"
June 2005, Bethesda, MD, NIH NCRR/NIBIB PI Meeting
Lecture: "Towards Understanding Membrane Channels"
July 2005, Urbana, IL, University of Illinois, Chemical Biology Seminar
Lecture: "Mechanical Functions of Proteins"
July 2005, Hangzhou China, Zhu Kezhen Distinguished Lecturer
Lecture: "How Nature Harvests Sunlight"
Lecture: "Towards Understanding Membrane Channels"
Lecture: "Mechanical Functions of Proteins"
July 2005, Paris, France, BioImage Summer School
Lecture: "Connecting Molecular Simulations to Experiment"
July 2005, Putney, Vermont, FASEB Summer Research Conference
Lecture: "Quantum Mechanical/molecular Mechanical Analysis of ATP Synthase"
August, 2005, Bad Honnef, Germany, 350. Heraeus-Seminar
Lecture: "Biochemical Mechanisms for Magnetic Orientation Animals"
August, 2005, Urbana, IL, University of Illinois, Molecular and Cellular Biology
Lecture: "Advances in Molecular Cell Biology and Computational Biophysics"
September, 2005, Penn State University, 2005-2006 Colloquium Program
Lecture: "Towards Understanding Membrane Channels"
September, 2005, UCLA, IPAM Workshop
Lecture: "Multiscale Simulations of DNA-protein, Protein-lipid Complexes"
September, 2005, University of Illinois, Department of Physics Colloquium
Lecture: "What is Life? An Answer Sought from Photosynthetic Bacteria"
October, 2005, Tutzing Germany, '87th International Bunsen Discussion Meeting
Lecture: "Mechanical Functions of Proteins"
October, 2005, Zurich, Switzerland, ETHZ Workshop Multiscale Modeling and Simulation
Lecture: "Physics of Photosynthesis"
Lecture: "The Many Faces of Aquaporins"
Lecture: "Single Molecule Electrical Recording with Natural and Synthetic Nanoporins
Lecture: "Proteins with Mechanical Functions"
Lecture: "Quantum Biology"
Lecture: "Molecular Double Motor ATP Synthase"
October-November, 2005, Geneva, Program 3me Cycle Lectures
Lecture: "Quantum Biology"
Lecture: "The Many Faces of Aquaporins"
Lecture: "Proteins with Mechanical Functions"
Lecture: "Quantum Biology"
November, 2005, Cold Springs Harbor, Banbury Lab, Banbury Lab Discussion of the Intracellular Environment
Lecture: "In Situ Molecular Modeling of Cellular Processes"
November, 2005, Seattle, WA, SC-05 International Conference for High Performance Computing, Networking, Storage and Analysis
Presentation (NCSA Booth): "Grid-Based NAMD Simulation of Gas Transport in Proteins"
Presentation (Argonne Teragrid Booth): "Grid-Based NAMD Simulation of Gas Transport in Proteins"
November-December 2005, Pittsburgh, PA, Pittsburgh Supercomputing Center, Hands-On Workshop on Computational Biophysics
Lecture: "Introduction to Protein Structure"
Lecture: "Statistical Mechanics of Proteins"
December 2005, Bonn, Germany, FIAS seminar, DFG's Review on Mathematics and Scientific Computing
Lecture: "Proteins with Mechanical Functions"
- September 2005, Knoxville, TN, Oak Ridge National Laboratory, Future
Technologies Colloquium Series
Lecture: "Adaptive MPI: Intelligent runtime strategies and performance prediction via simulation"
February 2005, Long Beach, CA, Biophysical Society 2005 Annual Meeting
Poster: "Structural evidence for asymmetric function of passive membrane channels"
Poster: "Role of water in transient cytochrome c2 docking"
February 2005, Urbana, IL, Beckman Institute, 4D Nanostructure Lecture Series
Lecture: "The Art of Water Conduction in Living Cells"
May 2005, Tahoe City, CA, Hands-On Workshop on Computational Biophysics
Lecture: "Parameters for Classical Force Fields"
Lecture: "Simulating Membrane Channels"
June 2005, Chicago, IL, Hands-On Workshop on Computational Biophysics
Lecture: "Parameters for Classical Force Fields"
Lecture: "Simulating Membrane Channels"
June 2005, San Francisco, CA, Hands-On Workshop on Computational Biophysics
Lecture: "Parameters for Classical Force Fields"
Lecture: "Simulating Membrane Channels"
October 2005, Philadelphia, PA, Membranes and Ion Channels, e- cheminfo 2005
Lecture: "Understanding Membrane Transport at Full Atomic Resolution: Molecular dynamics simulations of lipid bilayers and membrane channels"
October 2005, Columbus, Ohio, Ohio State University, Biological Membranes: Structure and Function
Lecture: "Transmembrane Traffic of Materials Through Pure Lipid Bilayers and Membrane Channels"
October 2005, Chicago, IL, Rush University, Department of Physiology, Departmental seminar
Lecture: "Visualizing the Art of Selective Transport in Membrane Channels"
November 2005, New Haven, CT, Yale University, Department of Physiology, Departmental seminar
Lecture: "Transmembrane traffic of materials through pure lipid bilayers and membrane channels"
November-December 2005, Pittsburgh, PA, Pittsburgh Supercomputing Center, Hands-On Workshop on Computational Biophysics
Lecture: "Parameters for Classical Force Fields"
Lecture: "Simulating Membrane Channels"
Other TCB members (includes meetings attended and poster sessions)
February 2005, Long Beach, CA, Biophysical Society 49th Annual Meeting
Lecture: "Molecular dynamics simulations of nuclear pore FG repeat proteins binding to importin-beta" (Tim Isgro)
Lecture: "Computational Study of the Chemo-Mechanical Coupling and ATP Hydrolysis in F1-ATPase" (Markus Dittrich)
Lecture: "Modeling the Polarizability of Carbon Nanotube Molecular Channels" (Deyu Lu)
Lecture: "Molecular Dynamics Study of an Integrin Ligand Complex" (Mu Gao)
Poster: "Microscopic Kinetics of DNA translocation through synthetic nanopores" (Aleksij Aksimentiev)
Poster: "Stretching DNA using artificial Nanopore" (Aleksij Aksimentiev)
Poster: "Imaging the Permeability of alpha-Hemolysin with Molecular Dynamics" (Aleksij Aksimentiev)
Poster: "Molecular Dynamics Study of Mechanosensation Proteins Ankyrin and Cadherin" (Marcos Sotomayor)
Poster: "Multiscale Modeling of Gating and Ion Conduction in the Mechanosensitive Channel of Small Conductance MscS" (Marcos Sotomayor)
Poster: "Molecular dynamics studies of nucleotide gated ion channel activity of aquaporin-1" (Jin Yu)
Poster: "Molecular Modeling and Dynamics Studies of GB1 Protein Fibril" (Eric Lee)
Poster: "Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins" (Amy Shih)
Poster: "Molecular dynamics study of substrate permeation and selectivity in E. coli aquaporins GlpF and AqpZ" (Yi Wang)
Poster: "Evolution of Excitation Transfer Pathways of Photosystem I from Cyanobacteria to Plants" (Melih Sener)
Poster: "Molecular dynamics simulations of spontaneous and forced motions of isolated subunits of F1-ATP synthase" (Barry Isralewitz)
Poster: "Mechanical Interactions between Lac Repressor and DNA Loops" (Elizabeth Villa)
Poster: "Molecular Dynamics Study of KvAP Gating" (Fatemeh Khalili)
February 2005, Urbana, IL, University of Illinois, Beckman Institute, Imaging Technology Group Forum
Lecture: "Dancing Proteins: 3-D Visualization of Protein Structure and Dynamics on Next-Generation Graphics Hardware" (John Stone)
February 2005, Rolla, MO, University of Missouri, Department of Computer Science CS Colloquium
Lecture: "Dancing Proteins: 3-D Visualization of Protein Structure and Dynamics on Next-Generation Graphics Hardware" (John Stone)
February 2005, West Lafayette, IN, Purdue Univesity, Envision Center
Lecture: "Dancing Proteins: 3-D Visualization of Protein Structure and Dynamics on Next-Generation Graphics Hardware" (John Stone)
March 2005, Urbana, IL, Beckman Institute, 4D Nanostructure Lecture Series
Lecture: "The Molecular Basis of Hearing" (Marcos Sotomayor)
Lecture: "Wrestling with DNA - How Proteins Regulate the Genome" (Elizabeth Villa)
Lecture: "And Then There Was Light - How Nature Harvests Sunlight" (Melih Sener)
March 2005, Urbana, IL, Beckman Institute Open House 2005
Lecture: "Wrestling with DNA - How Proteins Regulate the Genome" (Alexander Balaeff)
Lecture: "Wrestling with DNA - How Proteins Regulate the Genome" (Elizabeth Villa)
Lecture: "The Molecular Basis of Hearing" (Marcos Sotomayor)
Lecture: "DNA Inside a Nanopore" (Eduardo Chu-Cruz, Alek Aksimentiev)
Lecture: "Nanodisc" (Amy Shih)
Lecture: "Nano-soccer" (Deyu Lu)
April 2005, Urbana, IL, Beckman Institute, 4D Nanostructure Lecture Series
Lecture: "Transistors to DNA - Using Nanoscale Electronics for Sequencing Genomes" (Alek Aksimentiev)
April 2005, Albany, NY, New York State Department of Health, Wadsworth Center
Lecture: "Multiscale Modeling of Protein-DNA Complexes" (Elizabeth Villa)
June 2005, Dresden, Germany, MPIPKS, International Workshop on Classical and Quantum Dynamical Simulations in Chemical and Biological Physics
Lecture: "Quantum mechanical/molecular mechanical simulations of biomolecular systems" (Markus Dittrich)
July 2005, UIUC, Urbana, IL, Illinois Biophysics Society, Biophysics and Computational Biology Summer Symposium
Lecture: "When Light Falls in LOV: A Computational Study of a Plant Photoreceptor" (Markus Dittrich)
July 2005, Biddeford, ME, Gordon Research Conference, Mechanotransduction & Gravity Signaling In Biological Systems
Lecture Title: "Mechanisms of Mechanosensitive Channels and Mechanical Sensors Studied by Molecular Dynamics Simulations" (Marcos Sotomayor)
August 2005, Montpellier, France, IUPAB/EBSA International Biophysics Congress
Poster Title: "Tertiary and Secondary Structure Elasticity of Repeat Proteins" (Marcos Sotomayor)
August 2005, Bremen, Germany, Summer School: Biosensing with Channels
Lecture: "Molecular Dynamics Simulations of DNA Translocation through Synthetic and Biological Nanopores" (Alek Aksimentiev)
September 2005, Urbana, IL, Focused Workshop on Electronic Recognition of Biomolecules
Lecture: "Crawling with DNA Through a Nanopore: Molecular Dynamics Perspective" (Alek Aksimentiev)
September 2005, Los Angeles, CA, UCLA, Institute for Pure and Applied Mathematics (IPAM), MA2005 Workshop I: Multiscale Modeling in Soft Matter and Bio-Physics
Poster: "Mechanical Interactions between Lac Repressor and DNA Loops" (Elizabeth Villa)
October 2005, Tutzing, Germany, 87th International Bunsen Discussion Meeting on Mechanically Induced Chemistry -Theory and Experiment-
Lecture Title: "Tertiary and Secondary Structure Elasticity of Repeat Proteins" (Marcos Sotomayor)
October 2005, Urbana, IL, UIUC, The Beckman Institute, The Eighteenth Annual Cell & Molecular Biology/ Molecular Biophysics Training Grant Research Symposium
Lecture: "Dynamics of the lac repressor–DNA Complex Revealed by a Multiscale Simulation" (Elizabeth Villa)
October 2005, Univ. of Washington, Seattle, WA, David Baker Laboratory
Lecture: "Quantum Mechanical/Molecular Mechanical Simulations of Biomolecular Systems" (Markus Dittrich)
November 2005, Seattle, WA, SC|05 International Conference for High Performance Computing, Networking, Storage and Analysis
Presentation (NCSA Booth): "Grid-Based NAMD Simulation of Gas Transport in Proteins" (Jordi Cohen, Anton Arkhipov, Jim Phillips, Michelle Gower, Rick Kufrin, Klaus Schulten)
Presentation (Argonne Teragrid Booth): "Grid-Based NAMD Simulation of Gas Transport in Proteins" (Jordi Cohen, Anton Arkhipov, Jim Phillips, Michelle Gower, Rick Kufrin, Klaus Schulten)
- December 2005, UCSF, San Francisco, CA, A. Sali Laboratory,
Lecture: "Quantum mechanical/molecular mechanical simulations of biomolecular systems" (Markus Dittrich)
