VMD-L Mailing List

From: Tran Trung Tran (tran_at_doctor.com)
Date: Mon Sep 23 2002 - 19:23:46 CDT

Hello
 
I have two molecules from two different pdb files, and I wish to find
all the atoms in molecule A that are within 5 Angstrom of molecule B.
Please advice me how to do this.
 
I understand the usage of the command “within”, for example
atomselect 1 “within 5 of resname LYR”
 
However, I do not know how to use the command “within” when two
different molecules are involved.
 
Thanks in advance
 
Tran Trung Tran