VMD-L Mailing List

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About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Wed Oct 02 2024 - 14:05:06 CDT

• Chris Neale (Thu Jul 07 2022 - 21:25:56 CDT)
• Axel Kohlmeyer (Fri Mar 26 2021 - 14:01:39 CDT)
• John Stone (Thu Dec 31 2020 - 12:58:56 CST)
• Axel Kohlmeyer (Sat Dec 05 2020 - 17:08:10 CST)
• Abhishek TYAGI (Mon Nov 16 2020 - 01:05:52 CST)
• John Stone (Wed Oct 02 2019 - 10:08:43 CDT)
• Vermaas, Joshua (Wed Oct 02 2019 - 09:43:30 CDT)
• Giacomo Fiorin (Wed Oct 02 2019 - 09:26:45 CDT)
• Chitrak Gupta (Wed Oct 02 2019 - 09:24:07 CDT)
• Adupa Vasista (Sun Jul 14 2019 - 04:31:25 CDT)
• Jérôme Hénin (Mon Apr 29 2019 - 11:15:44 CDT)
• Vermaas, Joshua (Mon Apr 29 2019 - 11:15:05 CDT)
• Brian Radak (Mon Aug 27 2018 - 11:04:26 CDT)
• John Stone (Mon Aug 27 2018 - 10:12:44 CDT)
• Ashar Malik (Sun Jul 22 2018 - 05:48:29 CDT)
• John Stone (Fri Jun 22 2018 - 11:09:56 CDT)
• Mohammadjavad Mohammadi (Fri Jun 22 2018 - 10:26:18 CDT)
• John Stone (Thu Jun 21 2018 - 13:19:56 CDT)
• t.shivam_at_iitg.ernet.in (Wed Apr 11 2018 - 04:01:52 CDT)
• t.shivam_at_iitg.ernet.in (Mon Mar 12 2018 - 05:57:21 CDT)
• t.shivam_at_iitg.ernet.in (Fri Mar 09 2018 - 02:04:47 CST)
• Vermaas, Joshua (Mon Jan 08 2018 - 11:58:15 CST)
• Ashar Malik (Sat Jan 06 2018 - 07:04:01 CST)
• Jadzia Dax (Sat Jan 06 2018 - 06:52:54 CST)
• Tim Lo (Fri Dec 29 2017 - 20:38:47 CST)
• Suresh Ghimire (Mon Dec 25 2017 - 22:29:46 CST)
• John Stone (Mon Dec 18 2017 - 10:02:05 CST)
• McCullough, Scott (Sat Jul 22 2017 - 12:14:26 CDT)
• Tim Lo (Fri Jul 21 2017 - 20:29:08 CDT)
• Tim Lo (Fri Jul 21 2017 - 20:19:32 CDT)
• Giacomo Fiorin (Thu Jul 20 2017 - 09:40:20 CDT)
• Ashar Malik (Thu Jul 20 2017 - 03:23:39 CDT)
• Udit Aswal (Thu Apr 06 2017 - 00:54:35 CDT)
• Chitrak Gupta (Wed Apr 05 2017 - 10:43:55 CDT)
• Ajasja LjubetiÄ� (Wed Apr 05 2017 - 10:06:54 CDT)
• John Stone (Fri Dec 16 2016 - 13:56:24 CST)
• Vermaas, Joshua (Fri Dec 16 2016 - 12:47:54 CST)
• Karl Decker (Fri Dec 16 2016 - 11:27:49 CST)
• Karl Decker (Fri Dec 16 2016 - 10:36:42 CST)
• John Stone (Thu Dec 15 2016 - 11:27:01 CST)
• Bennion, Brian (Wed Jun 15 2016 - 18:11:37 CDT)
• Bennion, Brian (Wed Jun 15 2016 - 16:40:08 CDT)
• John Stone (Thu Dec 03 2015 - 12:43:51 CST)
• John Stone (Wed Aug 19 2015 - 14:39:00 CDT)
• Ozan Dernek (Wed Aug 19 2015 - 03:40:08 CDT)
• John Stone (Tue Aug 18 2015 - 10:09:40 CDT)
• Francesco Pietra (Fri May 29 2015 - 12:30:43 CDT)
• Josh Vermaas (Fri May 29 2015 - 10:58:07 CDT)
• Bennion, Brian (Fri May 29 2015 - 10:48:54 CDT)
• Maxim Belkin (Fri Mar 27 2015 - 13:26:01 CDT)
• Ajasja LjubetiÄ� (Fri Mar 27 2015 - 12:38:49 CDT)
• Maxim Belkin (Fri Mar 27 2015 - 11:55:05 CDT)
• Maxim Belkin (Fri Mar 06 2015 - 14:47:05 CST)
• M K (Wed Feb 25 2015 - 21:43:06 CST)
• Josh Vermaas (Mon Feb 23 2015 - 17:15:49 CST)
• Tristan Croll (Mon Feb 23 2015 - 17:43:10 CST)
• Martin, Erik W (Mon Feb 23 2015 - 17:38:36 CST)
• Ashar Malik (Mon Feb 23 2015 - 15:57:27 CST)
• Ashar Malik (Thu Feb 19 2015 - 17:48:43 CST)
• Tristan Croll (Wed Feb 18 2015 - 19:54:09 CST)
• Ashar Malik (Wed Feb 18 2015 - 17:08:05 CST)
• Ashar Malik (Wed Feb 18 2015 - 16:48:31 CST)
• Josh Vermaas (Tue Feb 03 2015 - 09:21:06 CST)
• MannyEful E (Tue Nov 18 2014 - 15:08:14 CST)
• Maxim Belkin (Tue Nov 18 2014 - 13:23:51 CST)
• MannyEful E (Tue Nov 18 2014 - 12:16:41 CST)
• Maxim Belkin (Tue Nov 18 2014 - 12:09:34 CST)
• MannyEful E (Tue Nov 18 2014 - 10:54:06 CST)
• MannyEful E (Tue Nov 18 2014 - 10:15:51 CST)
• Maxim Belkin (Tue Nov 18 2014 - 10:05:44 CST)
• MannyEful E (Tue Nov 18 2014 - 09:14:12 CST)
• Ajasja LjubetiÄ� (Tue Nov 18 2014 - 08:24:59 CST)
• John Stone (Fri May 16 2014 - 11:33:40 CDT)
• John Stone (Fri Dec 20 2013 - 16:01:20 CST)
• Axel Kohlmeyer (Thu Apr 25 2013 - 07:29:54 CDT)
• Jérôme Hénin (Thu Apr 25 2013 - 06:43:38 CDT)
• Axel Kohlmeyer (Thu Apr 25 2013 - 06:40:58 CDT)
• Jérôme Hénin (Thu Apr 25 2013 - 04:29:27 CDT)
• Mayne, Christopher G (Wed Apr 24 2013 - 18:02:10 CDT)
• Jeffrey Potoff (Sun Apr 21 2013 - 13:24:20 CDT)
• Pawel Kedzierski (Sun Apr 21 2013 - 09:44:28 CDT)
• Mert Gür (Tue Nov 27 2012 - 16:13:21 CST)
• Axel Kohlmeyer (Tue Nov 27 2012 - 16:06:29 CST)
• rainy908_at_yahoo.com (Thu Sep 13 2012 - 07:20:27 CDT)
• Axel Kohlmeyer (Thu Aug 02 2012 - 05:11:39 CDT)
• John Stone (Tue Jul 24 2012 - 11:56:10 CDT)
• Axel Kohlmeyer (Tue Jul 24 2012 - 11:10:42 CDT)
• John Stone (Mon Jul 23 2012 - 15:59:09 CDT)
• Axel Kohlmeyer (Mon Jul 23 2012 - 12:46:16 CDT)
• John Stone (Thu Oct 13 2011 - 10:33:26 CDT)
• denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 11:18:01 CDT)
• Axel Kohlmeyer (Mon Jan 03 2011 - 05:04:23 CST)
• Kirby Vandivort (Tue Dec 07 2010 - 11:15:01 CST)
• JC Gumbart (Thu Oct 07 2010 - 23:19:28 CDT)
• Rogan Carr (Sun Sep 12 2010 - 18:19:09 CDT)
• Edelmiro Moman (Sat Aug 21 2010 - 04:03:35 CDT)
• Ajasja LjubetiÄ� (Sat Aug 21 2010 - 02:14:19 CDT)
• John Stone (Fri Aug 20 2010 - 14:05:26 CDT)
• Joshua Adelman (Mon Mar 15 2010 - 19:56:04 CDT)
• JC Gumbart (Wed Mar 10 2010 - 23:26:30 CST)
• JC Gumbart (Wed Mar 10 2010 - 23:00:43 CST)
• Edelmiro Moman (Mon Mar 08 2010 - 14:05:52 CST)
• Olaf Lenz (Tue Jan 05 2010 - 09:12:28 CST)
• Axel Kohlmeyer (Tue Jan 05 2010 - 08:12:16 CST)
• Prathit Chatterjee (Tue Jan 05 2010 - 07:34:39 CST)
• jani sahil (Tue Jan 05 2010 - 00:49:00 CST)
• Prathit Chatterjee (Mon Jan 04 2010 - 23:22:16 CST)
• John Stone (Fri Nov 13 2009 - 08:19:04 CST)
• J. Rui Rodrigues (Fri Nov 13 2009 - 06:13:52 CST)
• John Stone (Thu Sep 10 2009 - 11:10:05 CDT)
• John Stone (Wed Sep 09 2009 - 14:14:08 CDT)
• John Stone (Wed Sep 09 2009 - 14:14:58 CDT)
• Roman Petrenko (Wed Sep 09 2009 - 14:09:35 CDT)
• Axel Kohlmeyer (Tue Apr 14 2009 - 07:25:54 CDT)
• Taufik Al-Sarraj (Mon Mar 16 2009 - 17:01:26 CDT)
• John Stone (Tue Mar 03 2009 - 15:42:19 CST)
• Irene Newhouse (Tue Mar 03 2009 - 15:37:48 CST)
• John Stone (Tue Mar 03 2009 - 14:58:22 CST)
• Irene Newhouse (Tue Mar 03 2009 - 14:55:11 CST)
• John Stone (Fri Feb 27 2009 - 18:03:40 CST)
• Axel Kohlmeyer (Fri Feb 27 2009 - 14:48:42 CST)
• Peter Freddolino (Mon Jan 26 2009 - 06:09:46 CST)
• Peter Freddolino (Tue Nov 11 2008 - 22:33:13 CST)
• Peter Freddolino (Tue Nov 11 2008 - 22:22:28 CST)
• Anirban Ghosh (Tue Nov 11 2008 - 22:27:15 CST)
• Peter Freddolino (Tue Nov 11 2008 - 22:07:42 CST)
• Anirban Ghosh (Tue Nov 11 2008 - 21:59:01 CST)
• Peter Freddolino (Tue Nov 11 2008 - 10:30:47 CST)
• Peter Freddolino (Tue Oct 21 2008 - 07:21:42 CDT)
• Axel Kohlmeyer (Sun Sep 28 2008 - 13:15:18 CDT)
• Kirby Vandivort (Thu Jul 10 2008 - 11:05:33 CDT)
• Abu Naser (Thu Jul 10 2008 - 11:23:19 CDT)
• Peter Freddolino (Mon Jan 28 2008 - 08:56:39 CST)
• Axel Kohlmeyer (Fri May 25 2007 - 11:00:48 CDT)
• Peter Freddolino (Thu May 17 2007 - 11:21:41 CDT)
• Axel Kohlmeyer (Thu May 03 2007 - 17:00:48 CDT)
• morten østergaard jensen (Tue Aug 22 2006 - 10:02:19 CDT)
• Axel Kohlmeyer (Tue Aug 22 2006 - 07:46:27 CDT)
• Peter Freddolino (Tue Aug 22 2006 - 07:36:35 CDT)
• John Stone (Tue Aug 08 2006 - 11:08:08 CDT)
• John Stone (Wed Jun 21 2006 - 13:21:42 CDT)
• snoze pa (Tue Jun 06 2006 - 17:47:34 CDT)
• John Stone (Tue Jun 06 2006 - 12:59:57 CDT)
• John Stone (Wed Mar 01 2006 - 14:56:46 CST)
• John Stone (Fri Oct 14 2005 - 14:46:53 CDT)
• Chang, Christopher (Mon Jul 18 2005 - 16:32:09 CDT)
• Blake Charlebois (Mon Jul 18 2005 - 16:26:56 CDT)
• John Stone (Tue Jun 21 2005 - 17:23:53 CDT)
• Jim Phillips (Thu Apr 07 2005 - 11:10:45 CDT)
• John Stone (Wed Apr 06 2005 - 15:05:52 CDT)
• John Stone (Mon Feb 28 2005 - 12:12:13 CST)
• John Stone (Mon Feb 28 2005 - 10:13:25 CST)
• John Stone (Mon Feb 21 2005 - 12:05:33 CST)
• John Stone (Thu Feb 17 2005 - 16:42:44 CST)
• Brian Bennion (Tue Dec 14 2004 - 12:47:07 CST)
• Charles McCallum (Wed Nov 17 2004 - 22:21:11 CST)
• John Stone (Mon Sep 20 2004 - 13:26:17 CDT)
• John Stone (Mon Jul 05 2004 - 14:31:03 CDT)
• John Stone (Mon Jul 05 2004 - 13:57:46 CDT)
• John Stone (Wed Jun 30 2004 - 17:16:57 CDT)
• John Stone (Sat Apr 24 2004 - 15:41:39 CDT)
• John Stone (Mon Apr 12 2004 - 21:59:15 CDT)
• John Stone (Wed Nov 19 2003 - 10:36:55 CST)
• John Stone (Wed Nov 19 2003 - 10:22:01 CST)
• Eugen Leitl (Wed Nov 19 2003 - 04:13:28 CST)
• John Stone (Thu Nov 06 2003 - 09:26:23 CST)
• ! Obtain degrees from Prestigious non-accredite dUniversities
  • 1(484)993-7152 Marty (Sat Jun 23 2007 - 01:45:28 CDT)
• "'Hands-on" Workshop on Computational Biophysics at Pittsburgh, PA, May 21-25, 2018
  • João Ribeiro (Fri Mar 16 2018 - 15:47:15 CDT)
• "adding polymer to CNT"
  • Giacomo Fiorin (Tue Feb 13 2018 - 09:38:45 CST)
  • Giacomo Fiorin (Fri Feb 02 2018 - 09:21:52 CST)
  • soroush ziaei (Fri Feb 02 2018 - 07:21:00 CST)
• "animate readdel"? (was: multiple automated calls to NAMD)
  • John Stone (Tue Jun 21 2005 - 17:42:11 CDT)
  • nordgren_at_sas.upenn.edu (Wed Jun 15 2005 - 08:15:10 CDT)
  • nordgren_at_sas.upenn.edu (Tue Jun 14 2005 - 03:09:48 CDT)
• "atomsel: set: bad data in 0th element" ffTK
  • Emma Wu (Thu Nov 12 2020 - 18:42:29 CST)
  • Pang, Yui Tik (Thu Nov 12 2020 - 00:07:15 CST)
  • Emma Wu (Thu Oct 22 2020 - 00:25:01 CDT)
• "can not find channel named ...
  • Axel Kohlmeyer (Wed Jul 28 2010 - 06:55:13 CDT)
  • Ajasja LjubetiÄ� (Wed Jul 28 2010 - 05:04:28 CDT)
  • Asmaa Elsheshiny (Wed Jul 28 2010 - 04:14:31 CDT)
• "cartoon" failing to show secondary structure
  • Kenley Barrett (Fri Dec 15 2006 - 11:27:30 CST)
  • John Stone (Fri Dec 15 2006 - 11:13:05 CST)
  • Kenley Barrett (Thu Dec 14 2006 - 18:31:09 CST)
• "cartoon" failing to show secondary structure--more info
  • John Stone (Fri Dec 15 2006 - 14:08:59 CST)
  • Kenley Barrett (Fri Dec 15 2006 - 12:39:54 CST)
• "color by mass" - change default colors
  • Axel Kohlmeyer (Wed Mar 25 2015 - 15:42:32 CDT)
  • Maria Sander (Wed Mar 25 2015 - 15:09:56 CDT)
• "Determine file type" list is far too long...
  • John Stone (Mon May 25 2009 - 23:09:16 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 11:40:33 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 08:52:35 CDT)
  • Rob (Sun May 24 2009 - 04:45:30 CDT)
• "Distributed Cavelib" VMD port
  • John Stone (Fri Sep 12 2003 - 11:15:00 CDT)
  • Romaric David (Fri Sep 12 2003 - 09:01:33 CDT)
• "Draw" different things in different frames
  • Axel Kohlmeyer (Sun Apr 17 2005 - 03:07:11 CDT)
  • Kiniu Wong (Sat Apr 16 2005 - 20:16:02 CDT)
• "Dynamic" gofr
  • Ondrej Kroutil (Wed Nov 12 2014 - 17:52:22 CST)
• "Error: no indices found in file." in carma.indices using NetworkView
  • Nick Bayhi (Fri Jan 07 2022 - 14:19:55 CST)
• "get {x y z}" returns single value
  • Olaf Lenz (Fri Feb 23 2007 - 11:16:30 CST)
  • Axel Kohlmeyer (Fri Feb 23 2007 - 11:10:04 CST)
  • Ivan Degtyarenko (Fri Feb 23 2007 - 10:18:16 CST)
• "graphics top line" and "render POV3"
  • Eric Smoll (Thu Oct 16 2014 - 14:07:32 CDT)
  • John Stone (Thu Oct 16 2014 - 14:11:34 CDT)
  • John Stone (Thu Oct 16 2014 - 14:00:05 CDT)
  • Eric Smoll (Thu Oct 16 2014 - 13:53:04 CDT)
  • John Stone (Thu Oct 16 2014 - 13:19:42 CDT)
  • Eric Smoll (Thu Oct 16 2014 - 13:01:57 CDT)
  • Eric Smoll (Wed Oct 15 2014 - 22:25:37 CDT)
  • John Stone (Wed Oct 15 2014 - 22:03:09 CDT)
  • Eric Smoll (Wed Oct 15 2014 - 21:46:05 CDT)
• "Hands-On" Workshop on Computational Biophysics
  • David Brandon (Tue Mar 08 2005 - 11:54:35 CST)
• "Hands-on" Workshop on Computational Biophysics at Lake Tahoe, August 4-8, 2014
  • David Brandon (Tue Apr 01 2014 - 16:23:08 CDT)
• "Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009
  • TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
• "Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA
  • David Brandon (Tue Dec 21 2010 - 14:38:16 CST)
• "Hands-On" Workshop on Computational Biophysics, November 1-5, 2010 & November 29-December 3, 2010 in Urbana, IL
  • TCBG Workshops (Thu Aug 12 2010 - 17:10:53 CDT)
• "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL
  • João Ribeiro (Mon Jul 17 2017 - 14:45:43 CDT)
  • João Ribeiro (Tue Jun 27 2017 - 13:46:57 CDT)
• "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL, September 10-14, 2018
  • João Ribeiro (Mon Jul 30 2018 - 16:15:45 CDT)
  • João Ribeiro (Wed Feb 07 2018 - 10:46:51 CST)
• "Hands-On" Workshop on QM/MM Simulations at Urbana, IL, April 5-7, 2018
  • João Ribeiro (Tue Feb 27 2018 - 08:08:16 CST)
  • João Ribeiro (Wed Feb 07 2018 - 10:44:57 CST)
• "Jump" in Energy and Volume graphs of my MD
  • John Stone (Thu Mar 31 2016 - 10:32:34 CDT)
  • Daniela Rivas (Wed Mar 30 2016 - 15:01:39 CDT)
• "Lines" representation does not show
  • John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
  • Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
  • John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
  • Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
  • John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
  • Martin Lep¹ík (Wed Sep 23 2009 - 10:49:33 CDT)
• "Lines" representation does not show:remote
  • Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
• "measure bond" vs veclength
  • John Stone (Wed Nov 26 2014 - 23:58:13 CST)
  • John Stone (Wed Nov 26 2014 - 23:45:10 CST)
  • Gianluca Interlandi (Wed Nov 26 2014 - 23:55:47 CST)
  • Gianluca Interlandi (Wed Nov 26 2014 - 18:06:03 CST)
• "measure fit" inaccuracy?
  • John Stone (Fri Jun 11 2004 - 10:16:03 CDT)
  • Justin Gullingsrud (Fri Jun 11 2004 - 10:07:54 CDT)
  • Jérôme Hénin (Fri Jun 11 2004 - 09:34:45 CDT)
  • John Stone (Fri Jun 11 2004 - 09:04:43 CDT)
  • Jérôme Hénin (Fri Jun 11 2004 - 02:48:49 CDT)
• "measure fit" problem
  • Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
  • John Stone (Wed Sep 09 2009 - 13:34:18 CDT)
• "measure symmetry" and SymmetryTools fail to find simple symmetry
  • John Stone (Fri Nov 22 2013 - 14:43:21 CST)
  • FX (Fri Nov 22 2013 - 07:13:43 CST)
  • John Stone (Wed Nov 20 2013 - 19:27:21 CST)
  • FX (Wed Nov 20 2013 - 18:00:44 CST)
  • FX (Sat Nov 16 2013 - 15:58:20 CST)
  • FX (Thu Nov 14 2013 - 10:42:58 CST)
• "mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val"
  • Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
• "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card
  • Low Soo Mei (Thu Jun 25 2009 - 00:41:15 CDT)
  • John Stone (Wed Jun 24 2009 - 22:17:52 CDT)
  • Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
• "non-grid" volumetric data
  • Axel Kohlmeyer (Sat Mar 19 2011 - 17:53:16 CDT)
  • Xiaogang Wang (Sat Mar 19 2011 - 17:15:48 CDT)
  • Axel Kohlmeyer (Sat Mar 19 2011 - 04:32:27 CDT)
  • Xiaogang Wang (Sat Mar 19 2011 - 01:23:32 CDT)
• "Not all atoms have unique coordinates"
  • Nitin Bhardwaj (Fri Jan 05 2007 - 12:31:18 CST)
• "nucleic" selection
  • Andrew Dalke (Wed Nov 12 2003 - 13:29:15 CST)
  • Vlad Cojocaru (Wed Nov 12 2003 - 10:45:47 CST)
  • Vlad Cojocaru (Wed Nov 12 2003 - 09:17:56 CST)
  • Vlad Cojocaru (Wed Nov 12 2003 - 04:55:26 CST)
• "OpenGL Display" and "VMD Main" windows; size and location on launch
  • Mayne, Christopher G (Mon Sep 29 2014 - 09:12:59 CDT)
  • Eric Smoll (Sun Sep 28 2014 - 15:27:09 CDT)
  • Eric Smoll (Sun Sep 28 2014 - 15:06:37 CDT)
  • John Stone (Sun Sep 28 2014 - 15:16:37 CDT)
• "pbcwithin" keyword
  • Axel Kohlmeyer (Thu Feb 19 2009 - 11:00:48 CST)
  • Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
• "Pick item mode" inactive in OSX bundle ?
  • John Stone (Thu Oct 03 2002 - 08:47:32 CDT)
  • Christian Simon (Thu Oct 03 2002 - 07:44:53 CDT)
• "Prepare Parameterization from CGenFF Program Output" in ffTK
  • Hazel, Justin (Mon Jul 09 2018 - 12:59:00 CDT)
  • Hazel, Justin (Mon Jul 09 2018 - 08:09:02 CDT)
  • Ushasi Pramanik 1710228 (Sun Jul 08 2018 - 23:04:00 CDT)
• "same as" failing?
  • Luis Gracia (Mon Oct 25 2004 - 14:45:54 CDT)
  • John Stone (Mon Oct 25 2004 - 13:49:14 CDT)
  • Luis Gracia (Mon Oct 25 2004 - 13:42:37 CDT)
• "Save coordinates..." silently overwrites existing files...
  • Axel Kohlmeyer (Mon Jun 15 2009 - 11:29:10 CDT)
  • Rob (Mon Jun 15 2009 - 10:25:10 CDT)
• "Selection not understood"
  • John Stone (Fri Jul 16 2004 - 13:18:59 CDT)
  • Olaf Lenz (Fri Jul 16 2004 - 09:47:04 CDT)
• "Sorry, this version VMD was compiled with Python support disabled"
  • John Stone (Wed Feb 04 2009 - 16:31:09 CST)
  • Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
• "spiral cylinders" instead of bonds when rendering with Tachyon?
  • Vermaas, Joshua (Thu Mar 23 2017 - 17:32:41 CDT)
  • Brian Radak (Thu Mar 23 2017 - 14:34:16 CDT)
• "tight" selection
  • John Stone (Tue Jun 06 2006 - 13:14:42 CDT)
• "transparent" material not working
  • John Stone (Thu May 02 2013 - 00:49:01 CDT)
  • sollebac (Wed May 01 2013 - 13:19:30 CDT)
  • John Stone (Sun Apr 28 2013 - 15:28:16 CDT)
  • Martin, Erik W (Fri Apr 26 2013 - 15:57:12 CDT)
• "truncate_trajectory" a new plugin
  • Èùìáò Åõáããåëéäçò (Fri Sep 14 2007 - 10:01:23 CDT)
• "Unable to create OpenGL window"
  • Axel Kohlmeyer (Tue Jul 18 2006 - 15:41:35 CDT)
  • César Dp (Tue Jul 18 2006 - 15:20:55 CDT)
• "user add key" feature
  • Eric Smoll (Wed Jan 20 2016 - 18:02:41 CST)
• "which files to make a spatial grid?" => Bug for list command?
  • John Stone (Tue Apr 17 2007 - 13:11:52 CDT)
  • Axel Kohlmeyer (Tue Apr 17 2007 - 07:25:11 CDT)
  • Philipp Schoen1 (Tue Apr 17 2007 - 07:03:46 CDT)
• # of waters limit
  • Justin Gullingsrud (Tue Mar 22 2005 - 18:09:26 CST)
  • dimka (Tue Mar 22 2005 - 15:19:51 CST)
• $64k/yr hpc post-doc@lanl
  • Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 19:05:34 CST)
• %-sign shortcut for mouse->force->atom not working
  • Axel Kohlmeyer (Sun May 06 2012 - 14:01:37 CDT)
  • Christopher Neale (Sun May 06 2012 - 12:21:38 CDT)
• 'Abort file I/O' key not working
  • aneesh cna (Wed Jan 02 2013 - 23:52:45 CST)
  • John Stone (Wed Jan 02 2013 - 14:37:00 CST)
  • aneesh cna (Fri Dec 28 2012 - 04:59:56 CST)
• 'gopython' Tkinter and Numeric Python error
  • John Stone (Wed Jan 30 2008 - 10:29:49 CST)
  • brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
• 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois
  • David Brandon (Thu Nov 17 2011 - 13:53:59 CST)
• 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 17-21, 2011, Bremen, Germany
  • David Brandon (Fri Jul 29 2011 - 14:15:06 CDT)
• 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 22-26, 2012 in Urbana, Illinois
  • David Brandon (Mon Jul 09 2012 - 14:32:25 CDT)
• 'Hands-on' Workshop on Computational Biophysics using VMD, NAMD, and ProDy, June 10-14, 2013 in Pittsburgh, PA
  • David Brandon (Fri Mar 08 2013 - 12:22:27 CST)
• 'percent' symbol syntax in .conf file?
  • John Stone (Tue Jan 14 2014 - 11:08:13 CST)
  • Maxim Belkin (Sat Dec 21 2013 - 18:10:36 CST)
  • Ryan Hoffman (Sat Dec 21 2013 - 09:49:40 CST)
• 'SURF' representation problem
  • John Stone (Sun Apr 08 2007 - 13:47:34 CDT)
  • dimka (Sun Apr 08 2007 - 13:22:11 CDT)
  • John Stone (Thu Mar 29 2007 - 18:26:50 CDT)
  • hl332_at_drexel.edu (Thu Mar 29 2007 - 18:09:43 CDT)
  • John Stone (Thu Mar 29 2007 - 16:10:43 CDT)
  • hl332_at_drexel.edu (Thu Mar 29 2007 - 16:04:02 CDT)
• 'topology' command crashes vmd 1.8 (LINUX)
  • John Stone (Wed Mar 05 2003 - 09:57:56 CST)
  • Patrick Ladam (Wed Mar 05 2003 - 06:22:43 CST)
• 'within' command in VMD
  • Axel Kohlmeyer (Sun May 11 2008 - 13:22:18 CDT)
  • John Stone (Sun May 11 2008 - 13:12:48 CDT)
  • Neelanjana Sengupta (Sun May 11 2008 - 12:35:35 CDT)
  • John Stone (Sun May 11 2008 - 10:54:53 CDT)
  • Axel Kohlmeyer (Sun May 11 2008 - 03:35:53 CDT)
  • Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
• 'wrap' any kind of solvent
  • Jim Phillips (Mon Dec 03 2001 - 11:14:50 CST)
  • Reuter Nathalie (Mon Dec 03 2001 - 03:20:45 CST)
• (); [Fwd: PET force field & topolgy files etc.]
  • Peter Freddolino (Thu Dec 28 2006 - 15:46:31 CST)
  • wolfinbm_at_uci.edu (Wed Dec 27 2006 - 14:23:22 CST)
• (forwarded) cylinder drawing bug in 1.7b1 on NT?
  • John Stone (Fri Jul 20 2001 - 10:20:06 CDT)
• (forwarded) Modifying a Tcl script
  • John Stone (Fri Jul 20 2001 - 10:17:04 CDT)
• (fwd) vmd 1.7b1 sequence window disappeares
  • John Stone (Mon Jul 23 2001 - 09:59:20 CDT)
• (Minnesota Supercomputing Institute Install) VMD 1.9 beta 3 posted for download...
  • nlabello (Tue Mar 08 2011 - 16:00:25 CST)
• (my) problems using molefacture dihedral
  • Peter Freddolino (Sat Apr 02 2011 - 19:05:13 CDT)
  • Francesco Pietra (Sat Apr 02 2011 - 15:36:21 CDT)
• (no subject)
  • Ananya Nayak (Tue Dec 12 2023 - 23:06:48 CST)
  • Alexei Rossokhin (Mon Jul 10 2023 - 07:26:50 CDT)
  • Ivan Franzoni (Tue Dec 20 2022 - 12:01:20 CST)
  • Edivaldo Rodrigues (Thu Jul 07 2022 - 16:12:53 CDT)
  • Huertas, Jan (Wed Jul 06 2022 - 12:04:35 CDT)
  • Kabir Biswas (Mon Apr 05 2021 - 17:45:40 CDT)
  • soumadwip ghosh (Thu Mar 25 2021 - 02:57:21 CDT)
  • soumadwip ghosh (Mon Mar 01 2021 - 03:13:50 CST)
  • K Jan (Thu Jan 07 2021 - 18:18:59 CST)
  • Ashma Khan (Thu Dec 10 2020 - 10:16:13 CST)
  • Arthur Pereira da Fonseca (Sat Dec 05 2020 - 15:31:30 CST)
  • Eashan C (Mon Nov 16 2020 - 00:32:30 CST)
  • Marcos Verissimo Alves (Mon Apr 06 2020 - 12:04:07 CDT)
  • anupama sharma (Wed Oct 02 2019 - 07:53:27 CDT)
  • Nirmitee Mulgaonkar (Sat Jul 13 2019 - 21:45:50 CDT)
  • Steven De Volder (Mon Apr 29 2019 - 08:57:40 CDT)
  • CMP (Mon Aug 27 2018 - 05:45:29 CDT)
  • abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:16:07 CDT)
  • abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:00:41 CDT)
  • Mohammadi, Mohammadjavad (Wed Jun 20 2018 - 20:12:40 CDT)
  • shyam sharma (Sun Jun 17 2018 - 03:24:35 CDT)
  • shyam sharma (Sat Jun 09 2018 - 12:14:07 CDT)
  • Ashar Malik (Tue Apr 10 2018 - 18:51:32 CDT)
  • JOHN FLANAGAN (Tue Apr 10 2018 - 16:36:48 CDT)
  • shyam sharma (Fri Mar 09 2018 - 01:15:48 CST)
  • shyam sharma (Thu Mar 08 2018 - 06:29:59 CST)
  • Suresh Ghimire (Sat Jan 06 2018 - 06:06:46 CST)
  • Suresh Ghimire (Sat Jan 06 2018 - 05:49:07 CST)
  • Suresh Ghimire (Sun Dec 31 2017 - 21:52:35 CST)
  • Suresh Ghimire (Sun Dec 17 2017 - 06:57:45 CST)
  • Siddharth Girdhar (Thu Jul 20 2017 - 01:42:01 CDT)
  • sesha surya vara prasad reddy karri (Mon Jul 17 2017 - 01:16:48 CDT)
  • sesha surya vara prasad reddy karri (Mon Jul 17 2017 - 01:10:17 CDT)
  • udit0000_at_gmail.com (Wed Apr 05 2017 - 09:36:00 CDT)
  • udit0000_at_gmail.com (Tue Apr 04 2017 - 23:33:52 CDT)
  • Udit Aswal (Fri Mar 31 2017 - 01:37:54 CDT)
  • MARIA JOSE ALIAGA GOSALVEZ (Tue Feb 14 2017 - 14:02:28 CST)
  • Karl Decker (Thu Dec 15 2016 - 11:13:26 CST)
  • Denilson F. Oliveira (Fri Dec 02 2016 - 05:51:38 CST)
  • Eric Smoll (Wed Jun 15 2016 - 15:41:27 CDT)
  • Abhijit Ghosh (Thu Dec 03 2015 - 12:35:43 CST)
  • Ozan Dernek (Tue Aug 18 2015 - 09:31:29 CDT)
  • Francesco Pietra (Fri May 29 2015 - 09:35:57 CDT)
  • Jevgenij Raskatov (Fri Mar 27 2015 - 11:43:31 CDT)
  • Jevgenij Raskatov (Fri Mar 06 2015 - 14:26:49 CST)
  • Jevgenij Raskatov (Fri Mar 06 2015 - 14:01:48 CST)
  • Jevgenij Raskatov (Wed Feb 25 2015 - 21:07:32 CST)
  • Jevgenij Raskatov (Mon Feb 23 2015 - 10:27:01 CST)
  • Jevgenij Raskatov (Thu Feb 19 2015 - 16:31:31 CST)
  • Jevgenij Raskatov (Wed Feb 18 2015 - 16:11:18 CST)
  • Jevgenij Raskatov (Sat Feb 07 2015 - 19:45:14 CST)
  • Jevgenij Raskatov (Mon Feb 02 2015 - 20:15:45 CST)
  • MannyEful E (Tue Nov 18 2014 - 07:40:29 CST)
  • Rangeen Othman (Fri Oct 24 2014 - 06:39:03 CDT)
  • Mahesh Chandrasekhar Gandikota (Wed May 14 2014 - 09:59:40 CDT)
  • Ed Robertson (Tue May 13 2014 - 04:48:54 CDT)
  • Arham Amouie (Wed Feb 12 2014 - 13:22:40 CST)
  • jeevan gc (Mon Dec 16 2013 - 17:00:04 CST)
  • Ignacio Irurzun (Wed Sep 11 2013 - 13:50:22 CDT)
  • Thomas Schmidt (Wed Jun 12 2013 - 15:37:37 CDT)
  • Lorenzo Gontrani (Wed Apr 24 2013 - 16:51:59 CDT)
  • Rob (Sun Apr 21 2013 - 06:10:17 CDT)
  • Ganesh Shahane (Sun Apr 21 2013 - 02:10:12 CDT)
  • Jessica Padden (Thu Mar 07 2013 - 13:05:49 CST)
  • Mustafa Tekpinar (Tue Nov 27 2012 - 15:00:55 CST)
  • Gert Peters (Sun Nov 18 2012 - 12:50:32 CST)
  • ragesh c (Tue Sep 18 2012 - 12:22:58 CDT)
  • rainy908_at_yahoo.com (Wed Sep 12 2012 - 23:43:19 CDT)
  • rainy908_at_yahoo.com (Wed Sep 12 2012 - 14:05:37 CDT)
  • Dudo (Wed Sep 12 2012 - 13:17:08 CDT)
  • rainy908 (Wed Sep 12 2012 - 11:55:53 CDT)
  • rainy908_at_yahoo.com (Tue Sep 11 2012 - 23:53:20 CDT)
  • Leandro Martínez (Wed Aug 22 2012 - 11:04:55 CDT)
  • Axel Kohlmeyer (Wed Aug 22 2012 - 06:17:50 CDT)
  • ragesh c (Wed Aug 22 2012 - 05:18:37 CDT)
  • DUCHER Roland (Thu Aug 02 2012 - 04:09:33 CDT)
  • Monika Madhavi (Tue Jul 24 2012 - 10:20:54 CDT)
  • Monika Madhavi (Tue Jul 24 2012 - 07:53:40 CDT)
  • Monika Madhavi (Mon Jul 23 2012 - 13:51:19 CDT)
  • Monika Madhavi (Mon Jul 23 2012 - 09:04:15 CDT)
  • Francesco Pietra (Sun Jun 10 2012 - 12:45:22 CDT)
  • Marc Charendoff (Thu May 31 2012 - 12:09:44 CDT)
  • rainy908_at_yahoo.com (Thu Apr 12 2012 - 20:54:30 CDT)
  • rainy908_at_yahoo.com (Fri Mar 23 2012 - 07:55:48 CDT)
  • rainy908_at_yahoo.com (Thu Mar 22 2012 - 17:42:38 CDT)
  • rainy908_at_yahoo.com (Thu Mar 22 2012 - 15:06:33 CDT)
  • vaneeta bala (Fri Jan 20 2012 - 01:11:06 CST)
  • hanif mahboobi (Tue Nov 22 2011 - 21:55:31 CST)
  • hanif mahboobi (Tue Nov 22 2011 - 18:19:50 CST)
  • niaz poorgholami (Fri Nov 11 2011 - 22:02:25 CST)
  • denilson_at_dqi.ufla.br (Thu Oct 06 2011 - 15:12:44 CDT)
  • denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 08:56:08 CDT)
  • Sibel Cakan (Mon Jan 03 2011 - 04:15:23 CST)
  • Diehl, Alex (NIH/NCI) [V] (Tue Dec 07 2010 - 14:06:41 CST)
  • Olimpia Popko (Tue Dec 07 2010 - 05:08:50 CST)
  • Kei Sit (Thu Oct 07 2010 - 21:03:31 CDT)
  • Axel Kohlmeyer (Sun Sep 12 2010 - 12:33:25 CDT)
  • ³Ì²ýÀû (Sun Sep 12 2010 - 11:12:01 CDT)
  • Janani.S (Fri Aug 20 2010 - 22:39:10 CDT)
  • yan zhang (Fri Aug 20 2010 - 03:54:47 CDT)
  • Irene Newhouse (Mon Mar 29 2010 - 15:12:41 CDT)
  • Roshan Tasgaonkar (Mon Mar 15 2010 - 18:07:34 CDT)
  • Roshan Tasgaonkar (Wed Mar 10 2010 - 22:55:31 CST)
  • Roshan Tasgaonkar (Mon Mar 08 2010 - 12:21:08 CST)
  • Francesco Pietra (Fri Nov 13 2009 - 03:23:21 CST)
  • Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
  • zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
  • Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
  • Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
  • Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
  • Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
  • Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
  • gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
  • Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
  • Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
  • JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
  • studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
  • Abu Naser (Thu Jul 10 2008 - 10:43:17 CDT)
  • paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
  • politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
  • mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
  • Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
  • Syed Tarique Moin (Mon Nov 26 2007 - 06:25:08 CST)
  • ZT Yew (Wed Oct 17 2007 - 18:26:24 CDT)
  • AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:06:23 CDT)
  • Lechuga, Javier (Fri May 25 2007 - 08:10:27 CDT)
  • Lechuga, Javier (Thu May 17 2007 - 09:40:07 CDT)
  • lanhua (Thu May 03 2007 - 16:30:24 CDT)
  • Stephen M. Dutz (Wed Feb 21 2007 - 15:40:45 CST)
  • Prevost Martine (Thu Jan 25 2007 - 04:41:37 CST)
  • Lechuga, Javier (Tue Aug 22 2006 - 06:12:20 CDT)
  • Hai-Jun Su (Tue Aug 08 2006 - 10:30:27 CDT)
  • Hai-Jun Su (Wed Jun 21 2006 - 12:22:29 CDT)
  • John Stone (Tue Jun 13 2006 - 11:47:30 CDT)
  • Zara Sands (Mon Jun 12 2006 - 06:36:34 CDT)
  • Sam Ansari (Tue Jun 06 2006 - 06:13:16 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:41:21 CDT)
  • Naser, Md Abu (Wed Mar 01 2006 - 14:17:10 CST)
  • Naser, Md Abu (Fri Oct 14 2005 - 14:12:44 CDT)
  • Yifat Brill (Tue Sep 27 2005 - 07:03:33 CDT)
  • Demetrios Braddock (Thu Sep 15 2005 - 18:40:47 CDT)
  • Sale, Kenneth L (Mon Jul 18 2005 - 14:48:01 CDT)
  • Simon Whitehead (Tue Jun 14 2005 - 05:34:53 CDT)
  • ËïÍ¢ (Wed Apr 06 2005 - 08:58:13 CDT)
  • matteo.pennestri_at_virgilio.it (Thu Feb 24 2005 - 09:11:19 CST)
  • matteo.pennestri_at_virgilio.it (Wed Feb 23 2005 - 04:44:47 CST)
  • James Stevens (Fri Feb 18 2005 - 14:24:19 CST)
  • Francis Reyes (Thu Feb 17 2005 - 16:33:15 CST)
  • dtp3+_at_pitt.edu (Mon Jan 03 2005 - 14:33:55 CST)
  • Eunice Ramirez Melendez (Mon Dec 13 2004 - 19:20:55 CST)
  • Paul Whitford (Wed Nov 17 2004 - 19:01:11 CST)
  • mdcooper (Mon Sep 20 2004 - 13:14:02 CDT)
  • Karunesh Arora (Thu Jul 29 2004 - 10:09:40 CDT)
  • ying xiong (Thu Jul 01 2004 - 05:57:28 CDT)
  • Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:28:42 CDT)
  • Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:08:09 CDT)
  • Heshe Peshkin (Tue Jun 29 2004 - 14:58:01 CDT)
  • Andrew Watts (Fri Apr 23 2004 - 15:26:37 CDT)
  • Yang Yang (Fri Apr 16 2004 - 21:59:41 CDT)
  • Yang Yang (Thu Apr 15 2004 - 13:19:11 CDT)
  • Ajith Gunaratne (Sun Apr 11 2004 - 23:36:05 CDT)
  • Jerry Ebalunode (Fri Mar 05 2004 - 23:09:07 CST)
  • B $B6Q (Mon Feb 16 2004 - 19:44:43 CST)
  • Ioana Cozmuta (Mon Dec 08 2003 - 18:10:49 CST)
  • Alexandre Vakhrouchev (Wed Nov 19 2003 - 02:11:14 CST)
  • Dongsheng Zhang (Tue Nov 18 2003 - 17:24:20 CST)
  • Alexandre Vakhrouchev (Thu Nov 06 2003 - 06:43:18 CST)
  • J. Rui Rodrigues (Fri Oct 17 2003 - 11:46:41 CDT)
  • Tsu-Fan Cheng (Wed Sep 17 2003 - 22:02:23 CDT)
  • Gemma Kinsella (Tue Jun 24 2003 - 10:11:04 CDT)
  • Gemma Kinsella (Tue Jun 24 2003 - 10:07:26 CDT)
  • Dongsheng Zhang (Wed May 21 2003 - 23:13:52 CDT)
  • silvya (Thu Apr 10 2003 - 17:55:11 CDT)
  • Markus Laub (Mon Mar 31 2003 - 06:31:44 CST)
  • chandran karunakaran (Thu Mar 20 2003 - 13:56:44 CST)
  • chandran karunakaran (Thu Mar 20 2003 - 13:55:13 CST)
  • César Filipe Barbosa Ribeiro (Sun Dec 02 2001 - 13:50:44 CST)
  • prachi singh (Mon Jun 05 2000 - 08:26:51 CDT)
• (Semi-)transparent windows on installation on a virtual server
  • John Stone (Thu Nov 18 2021 - 14:30:25 CST)
  • Per Larsson (Thu Nov 18 2021 - 14:21:04 CST)
  • Per Larsson (Wed Nov 10 2021 - 02:07:52 CST)
  • John Stone (Tue Nov 09 2021 - 15:36:18 CST)
  • Per Larsson (Tue Nov 09 2021 - 14:33:47 CST)
• (UNCLASSIFIED)
  • John Stone (Fri Jan 04 2008 - 13:29:49 CST)
  • Paul, Kristian (Cont, ARL/WMRD) (Fri Jan 04 2008 - 13:22:28 CST)
  • Balu, Radhakrishnan (Cont, ARL/WMRD) (Tue Nov 27 2007 - 09:18:18 CST)
• (xterm: Command not found) error
  • John Stone (Wed Apr 12 2006 - 14:29:07 CDT)
  • Jorge Hernandez Fernandez (Wed Apr 12 2006 - 14:14:58 CDT)
• -fpascal-strings flag when compiling with TDCONNEXION option
  • John Stone (Wed Jan 13 2016 - 13:29:06 CST)
  • Tristan Croll (Wed Jan 13 2016 - 13:31:47 CST)
  • Tristan Croll (Wed Jan 06 2016 - 01:58:40 CST)
  • Tristan Croll (Wed Jan 06 2016 - 01:50:30 CST)
• -restrict option in measure sasa
  • Chitrak Gupta (Fri Sep 18 2015 - 11:51:03 CDT)
  • Josh Vermaas (Thu Sep 17 2015 - 09:27:36 CDT)
  • Chitrak Gupta (Wed Sep 16 2015 - 12:42:26 CDT)
• -samples flag of measure sasa
  • John Stone (Fri Jun 18 2010 - 14:22:19 CDT)
  • Edward Lyman (Fri Jun 18 2010 - 14:15:10 CDT)
  • John Stone (Fri Jun 18 2010 - 13:10:08 CDT)
  • Edward Lyman (Thu Jun 17 2010 - 11:47:34 CDT)
• .car or .xyz output
  • John Stone (Fri Aug 05 2011 - 16:15:47 CDT)
  • winardi, erik (Wed Aug 03 2011 - 19:39:47 CDT)
• .COOR TO PDB FILE
  • Babban Mia (Sat Aug 13 2011 - 01:11:48 CDT)
• .cshrc error prevents VMD working on OSX10.3.3??? or something else???
  • John Stone (Tue Mar 23 2004 - 10:54:22 CST)
  • Dr. Daniel James White PhD (Tue Mar 23 2004 - 03:36:59 CST)
• .grd and .srf
  • vivek sharma (Mon Sep 19 2005 - 00:09:52 CDT)
  • John Stone (Fri Sep 16 2005 - 16:37:21 CDT)
  • John Stone (Fri Sep 16 2005 - 16:08:13 CDT)
  • John Stone (Fri Sep 16 2005 - 10:25:47 CDT)
  • vivek sharma (Fri Sep 16 2005 - 01:52:45 CDT)
• .gro files written with python script not displayed until strange modification
  • Vermaas, Joshua (Thu Feb 02 2017 - 16:40:25 CST)
  • Benjamin Joseph Coscia (Thu Feb 02 2017 - 14:51:44 CST)
• .gro format to .pqr format
  • Axel Kohlmeyer (Wed Jun 01 2011 - 10:52:24 CDT)
  • Mona Habibi (Wed Jun 01 2011 - 10:17:20 CDT)
• .js file format for point cloud data
  • Vermaas, Joshua (Thu May 17 2018 - 12:14:24 CDT)
  • TRINH Minh Hieu (Wed May 16 2018 - 20:35:56 CDT)
• .mdcrd to .trr conversion problem
  • Norman Geist (Wed Aug 05 2015 - 05:12:02 CDT)
  • Ajasja LjubetiÄ� (Wed Aug 05 2015 - 03:35:46 CDT)
  • Vishal Nemaysh (Wed Aug 05 2015 - 02:00:59 CDT)
• .obj Oddity
  • Darrell Kuykendall (Thu Jul 24 2014 - 13:57:16 CDT)
  • John Stone (Thu Jul 24 2014 - 10:19:22 CDT)
  • Darrell Kuykendall (Thu Jul 24 2014 - 10:00:20 CDT)
  • John Stone (Thu Jul 24 2014 - 09:37:08 CDT)
  • Darrell Kuykendall (Wed Jul 23 2014 - 15:30:19 CDT)
• .pdb file from XMD
  • John Stone (Thu Nov 02 2006 - 10:45:49 CST)
  • Alexandr Isayev (Thu Nov 02 2006 - 09:18:20 CST)
  • 04215287d_at_polyu.edu.hk (Thu Nov 02 2006 - 08:39:44 CST)
• .pdbqt file type
  • John Stone (Thu Mar 17 2011 - 09:56:08 CDT)
  • Francesco Pietra (Thu Mar 17 2011 - 02:38:19 CDT)
  • Francesco Pietra (Wed Mar 16 2011 - 12:15:51 CDT)
• .psf and .params files for IMD
  • John Stone (Thu Dec 11 2003 - 10:15:30 CST)
  • Harit Jani (Wed Dec 10 2003 - 19:08:02 CST)
• .psf for porphyrin
  • javier.vallejos_at_correo.usach.cl (Sat Oct 21 2006 - 18:11:19 CDT)
• .str file generation of nitrile group containing ligands
  • Hideyuki Miyatake (Fri Sep 27 2024 - 06:59:30 CDT)
  • Klimkowski, V (Thu Sep 26 2024 - 21:04:11 CDT)
  • Hideyuki Miyatake (Wed Sep 25 2024 - 21:14:12 CDT)
  • Josh Vermaas (Wed Sep 25 2024 - 09:09:41 CDT)
  • Hideyuki Miyatake (Tue Sep 24 2024 - 20:55:26 CDT)
• .trr files slow to load
  • Axel Kohlmeyer (Mon May 07 2012 - 12:55:52 CDT)
  • John Stone (Mon May 07 2012 - 12:40:13 CDT)
  • patrick wintrode (Mon May 07 2012 - 12:00:19 CDT)
• .VMD state file does not load properly
  • Axel Kohlmeyer (Wed Aug 28 2013 - 11:09:28 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 11:03:01 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 07:30:07 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2013 - 07:45:20 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 04:58:32 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 03:43:30 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2013 - 04:52:20 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2013 - 05:05:07 CDT)
• .vmdrc
  • John Stone (Thu Jun 22 2006 - 15:17:31 CDT)
  • Brian Kidd (Wed Jun 21 2006 - 18:26:48 CDT)
• .vmdrc file
  • Monoj Mon Kalita (Mon Jun 16 2014 - 10:06:57 CDT)
• .xsf triclinic cell contents
  • Axel Kohlmeyer (Fri Nov 19 2010 - 14:49:31 CST)
  • Axel Kohlmeyer (Thu Nov 18 2010 - 15:41:28 CST)
  • Erin L. (Thu Nov 18 2010 - 14:23:06 CST)
• .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools?
  • Olaf Lenz (Thu Jul 16 2009 - 01:14:37 CDT)
  • John Stone (Wed Jul 15 2009 - 14:32:57 CDT)
  • Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
• .xyz bond
  • Axel Kohlmeyer (Mon Feb 20 2012 - 06:07:02 CST)
  • winardi, erik (Mon Feb 20 2012 - 05:15:05 CST)
• .XYZ File format
  • Ramesh K. Sistla (Mon Jun 23 2003 - 06:10:30 CDT)
  • Shantipriya Tenneti (Fri Jun 20 2003 - 18:04:42 CDT)
• .XYZ File format (DL_POLY conversion)
  • John Stone (Mon Jun 23 2003 - 09:37:34 CDT)
• .xyz file, namelist index too large error
  • John Stone (Thu Jun 07 2007 - 11:11:43 CDT)
  • Axel Kohlmeyer (Wed Jun 06 2007 - 19:00:56 CDT)
  • Erkan Tuzel (Wed Jun 06 2007 - 19:39:48 CDT)
• .xyz to .dcd using catdcd
  • John Stone (Fri Apr 20 2007 - 15:36:36 CDT)
  • John Stone (Tue Apr 17 2007 - 12:48:12 CDT)
  • Ekta Khurana (Mon Apr 16 2007 - 21:31:42 CDT)
  • Peter Freddolino (Mon Apr 16 2007 - 21:31:32 CDT)
  • Axel Kohlmeyer (Mon Apr 16 2007 - 19:51:35 CDT)
  • Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
  • Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
  • Ekta Khurana (Fri Apr 13 2007 - 16:08:51 CDT)
• /usr/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libOpenGL.so.0:
  • John Stone (Mon Jan 11 2021 - 16:42:59 CST)
  • Mi Yang (Mon Jan 04 2021 - 08:40:42 CST)
• 0ne of a kind repl1cas
  • Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
• 1-Nanotube Zigzag and 2-saving coordinates problem
  • srikasi.qut_at_gmail.com (Tue Feb 07 2023 - 00:00:41 CST)
• 1.3b2
  • robert austin (Sun Mar 21 1999 - 16:31:34 CST)
  • John Stone (Wed Mar 03 1999 - 12:23:29 CST)
  • Keith Refson (Wed Mar 03 1999 - 11:51:13 CST)
• 1.6.1 hotkey problem
  • Justin Gullingsrud (Wed May 02 2001 - 15:18:40 CDT)
  • Ben Cornett (Wed May 02 2001 - 13:05:47 CDT)
• 1.8.2beta
  • Mike McCallum (Tue Nov 25 2003 - 16:38:38 CST)
• 1.8.3
  • John Stone (Fri Jul 30 2004 - 14:33:35 CDT)
  • Daniel B. Faken (Fri Jul 30 2004 - 09:36:52 CDT)
• 1.8.5: VASP plugin not correct
  • Axel Kohlmeyer (Tue Sep 26 2006 - 09:33:45 CDT)
  • John Stone (Mon Sep 25 2006 - 21:23:42 CDT)
  • Rob (Mon Sep 25 2006 - 17:57:22 CDT)
  • Rob (Mon Sep 25 2006 - 17:55:02 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2006 - 11:44:23 CDT)
  • Rob (Mon Sep 25 2006 - 11:17:10 CDT)
  • John Stone (Mon Sep 25 2006 - 09:18:08 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2006 - 08:45:26 CDT)
  • John Stone (Mon Sep 25 2006 - 07:48:33 CDT)
  • Rob (Mon Sep 25 2006 - 07:33:43 CDT)
  • John Stone (Mon Sep 25 2006 - 06:23:48 CDT)
  • Rob (Mon Sep 25 2006 - 05:45:15 CDT)
  • John Stone (Fri Sep 22 2006 - 12:36:44 CDT)
  • Rob (Thu Sep 21 2006 - 22:15:06 CDT)
• 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL)
  • John Stone (Sun Apr 08 2007 - 11:26:33 CDT)
  • Charles Cleveland (Sun Apr 08 2007 - 08:05:00 CDT)
• 1.9.2 beta2 doesn't pop up window
  • Albert (Thu Dec 25 2014 - 05:34:25 CST)
• 1.9.3 Version
  • John Stone (Fri Aug 28 2015 - 01:23:04 CDT)
  • Christian Wohlschlager (Thu Aug 27 2015 - 08:22:51 CDT)
• 1.9.4 beta version of VMD
  • John Stone (Mon Aug 27 2018 - 11:35:47 CDT)
  • John Stone (Mon Aug 27 2018 - 09:55:17 CDT)
  • ABEL Stephane (Sun Aug 26 2018 - 10:12:23 CDT)
  • Giacomo Fiorin (Sun Aug 26 2018 - 09:32:31 CDT)
  • ABEL Stephane (Sun Aug 26 2018 - 07:43:43 CDT)
• 1.9.4_a43 mixes g++ and gcc during building and ignores LDFLAGS
  • Francisco Ramos (Thu Sep 17 2020 - 06:26:43 CDT)
• 1.9.4_a43 parallel build issues with high -j
  • John Stone (Wed Sep 16 2020 - 13:38:35 CDT)
  • Giacomo Fiorin (Wed Sep 16 2020 - 12:55:38 CDT)
  • John Stone (Wed Sep 16 2020 - 11:44:29 CDT)
  • Francisco Ramos (Wed Sep 16 2020 - 06:32:59 CDT)
• 1.9.4_a43: chemical2vmd should use /tmp instead of /usr/tmp
  • Francisco Ramos (Thu Sep 17 2020 - 06:33:30 CDT)
• 1.9.4a43-Catalina-Rev6 TkConsole Up Arrow History
  • John Stone (Mon Jul 13 2020 - 13:36:59 CDT)
  • Karl Lundquist (Mon Jul 13 2020 - 11:32:18 CDT)
  • FX (Mon Jul 13 2020 - 11:03:01 CDT)
  • Mortimer Hemmit (Mon Jul 13 2020 - 10:04:19 CDT)
  • Mortimer Hemmit (Fri Jul 03 2020 - 20:11:22 CDT)
• 1.9.4a50 - unable to open DCDs win64
  • Jason Smith (Fri Dec 18 2020 - 12:01:59 CST)
  • John Stone (Fri Dec 18 2020 - 10:22:58 CST)
  • John Stone (Fri Dec 18 2020 - 10:10:27 CST)
  • Giacomo Fiorin (Fri Dec 18 2020 - 09:51:52 CST)
  • Jérôme Hénin (Fri Dec 18 2020 - 08:45:13 CST)
  • Jason Smith (Thu Dec 17 2020 - 21:11:57 CST)
  • John Stone (Thu Dec 17 2020 - 22:49:39 CST)
  • John Stone (Thu Dec 17 2020 - 09:43:05 CST)
  • John Stone (Wed Dec 16 2020 - 20:32:27 CST)
  • Jason Smith (Wed Dec 16 2020 - 19:35:18 CST)
• 100% of CPU usage
  • John Stone (Wed Sep 07 2005 - 22:22:16 CDT)
  • John Stone (Thu Aug 11 2005 - 09:46:14 CDT)
  • griadi_at_utalca.cl (Wed Aug 10 2005 - 18:46:46 CDT)
• 15% off on two watches
  • Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
• 1999 VMD User Survey Report
  • John Stone (Mon May 24 1999 - 15:21:56 CDT)
• 1CA2 autoionization
  • Ernesto Aleksei Delgado Hurtado (Tue Feb 19 2019 - 12:17:23 CST)
  • 김민재 (Tue Feb 19 2019 - 08:44:29 CST)
• 2 Issues in VMD 1.9 beta3
  • Axel Kohlmeyer (Fri Mar 11 2011 - 08:14:02 CST)
  • hanif mahboobi (Fri Mar 11 2011 - 06:10:30 CST)
• 2 more quick questions
  • John Stone (Wed Jan 22 2003 - 18:18:30 CST)
  • phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 17:53:54 CST)
• 2 questions
  • Justin Gullingsrud (Wed Jan 09 2002 - 11:23:07 CST)
  • Sanjeev B.S. (Mon Jan 07 2002 - 02:43:18 CST)
• 2 questions about "measure sasa"
  • John Stone (Thu Mar 04 2010 - 10:50:11 CST)
  • Edward Lyman (Fri Feb 26 2010 - 13:44:59 CST)
  • Edward Lyman (Thu Feb 25 2010 - 17:05:37 CST)
  • John Stone (Thu Feb 25 2010 - 17:00:31 CST)
  • Edward Lyman (Wed Feb 17 2010 - 14:40:53 CST)
• 2-Dimensional map of a lipid molecule around the protein
  • Giacomo Fiorin (Mon Mar 26 2018 - 09:01:18 CDT)
  • Chris Neale (Thu Mar 22 2018 - 10:31:06 CDT)
  • Giacomo Fiorin (Thu Mar 22 2018 - 10:04:10 CDT)
  • Giacomo Fiorin (Wed Mar 21 2018 - 09:06:36 CDT)
  • Shashank Ranjan Srivastava (Wed Mar 21 2018 - 01:16:55 CDT)
• 20 colors for 20 amino acids!
  • John Stone (Wed Jan 22 2003 - 10:13:30 CST)
  • Dr Nick (Fri Jan 17 2003 - 11:23:28 CST)
• 2000 VMD Survey Report is up
  • John Stone (Mon Nov 13 2000 - 18:08:44 CST)
• 2006 VMD user survey in progress
  • John Stone (Wed Aug 02 2006 - 18:05:13 CDT)
• 2011 VMD User Survey results are posted...
  • John Stone (Tue Sep 13 2011 - 15:26:21 CDT)
• 2016 ISQBP Meeting: early registration / abstract submission deadline approaching
  • Vlad Cojocaru (Thu Mar 17 2016 - 03:48:59 CDT)
• 2D Contour plot
  • ban arn (Wed Apr 06 2011 - 05:06:09 CDT)
• 2D projection
  • Paul Grayson (Fri Jul 26 2002 - 10:11:58 CDT)
  • John Stone (Fri Jul 26 2002 - 09:40:38 CDT)
  • Stéphane Teletchéa (Thu Jul 25 2002 - 08:12:15 CDT)
• 2D RMSD matrix plot
  • ban arn (Fri Jul 30 2010 - 05:52:02 CDT)
• 2D rmsd matrix plot for C-alpha atoms
  • ban arn (Wed Jul 28 2010 - 07:55:33 CDT)
  • Leonardo Trabuco (Wed Jul 28 2010 - 07:50:53 CDT)
  • ban arn (Wed Jul 28 2010 - 08:01:54 CDT)
  • Leonardo Trabuco (Wed Jul 28 2010 - 07:59:08 CDT)
  • ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
  • Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
  • ban arn (Wed Jul 28 2010 - 05:50:21 CDT)
• 2D rmsd plot for C-alpha atoms
  • ban arn (Tue Jul 27 2010 - 10:55:48 CDT)
  • Leonardo Trabuco (Tue Jul 27 2010 - 11:07:03 CDT)
• 3 simple questions from a newbie
  • Justin Gullingsrud (Mon Jul 23 2001 - 12:34:16 CDT)
  • Alexey Kozlenkov (Mon Jul 23 2001 - 07:01:43 CDT)
• 3-d printing of vmd scenes
  • Hurt, Darrell (NIH/NIAID) [E] (Wed May 28 2014 - 15:04:24 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Wed May 28 2014 - 15:11:38 CDT)
  • John Stone (Wed May 28 2014 - 14:31:10 CDT)
  • Bennion, Brian (Wed May 28 2014 - 11:53:36 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Mon May 19 2014 - 09:49:56 CDT)
  • John Stone (Fri May 16 2014 - 14:11:06 CDT)
  • Bennion, Brian (Fri May 16 2014 - 12:49:05 CDT)
• 3-d visualization
  • John Stone (Wed May 28 2003 - 12:29:25 CDT)
• 32bit memory problems on Mac OS
  • John Stone (Thu Mar 28 2019 - 21:39:03 CDT)
  • Tom Bartl (Thu Mar 28 2019 - 12:11:05 CDT)
  • Tom Bartl (Mon Mar 18 2019 - 09:50:54 CDT)
  • John Stone (Sun Mar 17 2019 - 19:14:31 CDT)
  • Tom Bartl (Sat Mar 16 2019 - 14:10:48 CDT)
• 3D Connexion - Space Navigator (OSX drivers)
  • John Stone (Wed Mar 03 2010 - 10:34:03 CST)
  • Tibbitt, Jeffrey A. (Tue Mar 02 2010 - 20:24:34 CST)
• 3D density in the specific part of the simulation box
  • Axel Kohlmeyer (Tue May 01 2012 - 07:34:55 CDT)
  • fariba taghavi (Tue May 01 2012 - 00:48:35 CDT)
• 3D glasses with LCD
  • John Stone (Wed Jan 20 2010 - 10:08:24 CST)
  • Nicolas Floquet (Wed Jan 20 2010 - 06:52:16 CST)
• 3D Glasses with LCD for VMD
  • Nicolas Floquet (Wed Jan 20 2010 - 06:46:11 CST)
• 3D Graphics
  • John Stone (Wed Nov 26 2008 - 11:16:18 CST)
  • Jesper Soerensen (Tue Nov 25 2008 - 09:41:12 CST)
  • John Stone (Mon Nov 24 2008 - 10:40:21 CST)
  • Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
• 3D grid data to 2D contour?
  • John Stone (Tue Feb 20 2007 - 02:04:57 CST)
  • Ivan Degtyarenko (Thu Feb 15 2007 - 15:04:05 CST)
• 3D hardware
  • Rubner, Oliver (Wed Oct 17 2018 - 03:52:54 CDT)
• 3d pdf
  • John Stone (Tue Jul 09 2013 - 13:43:25 CDT)
  • Roberto Gaspari (Sun Jun 30 2013 - 14:47:25 CDT)
• 3D pdf problem
  • Michael K. Gilson (Mon Aug 31 2009 - 16:22:55 CDT)
  • John Stone (Mon Aug 31 2009 - 14:50:33 CDT)
  • Michael K. Gilson (Mon Aug 31 2009 - 14:36:49 CDT)
  • John Stone (Mon Aug 31 2009 - 11:51:01 CDT)
  • Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
• 3D printing
  • John Stone (Fri Dec 06 2002 - 16:17:24 CST)
• 3D projection of vmd window
  • John Stone (Mon Nov 28 2016 - 00:07:15 CST)
  • Cyril Bauvais (Thu Nov 24 2016 - 04:08:16 CST)
  • Cyril Bauvais (Thu Nov 03 2016 - 18:18:50 CDT)
• 3D projectors compatible with VMD.
  • John Stone (Wed Aug 08 2012 - 09:49:41 CDT)
  • Diego Gomes (Tue Aug 07 2012 - 20:43:23 CDT)
• 3D protein visualization
  • Ignacio Fernández Galván (Tue Nov 09 2010 - 03:05:03 CST)
  • Joseph Bylund (Mon Nov 08 2010 - 18:39:42 CST)
  • quantrum75 (Mon Nov 08 2010 - 17:31:55 CST)
  • John Stone (Mon Nov 08 2010 - 16:33:55 CST)
  • John Stone (Mon Nov 08 2010 - 16:31:45 CST)
  • Deepangi Pandit (Mon Nov 08 2010 - 15:59:08 CST)
  • Ajasja LjubetiÄ� (Mon Nov 08 2010 - 15:10:33 CST)
  • Axel Kohlmeyer (Mon Nov 08 2010 - 13:22:50 CST)
  • quantrum75 (Mon Nov 08 2010 - 12:37:50 CST)
• 3d space navigator and MacosX-vmd
  • Passerone, Daniele (Wed Jul 11 2012 - 09:41:45 CDT)
  • John Stone (Wed Jul 11 2012 - 09:22:59 CDT)
  • Passerone, Daniele (Wed Jul 11 2012 - 04:25:37 CDT)
  • John Stone (Tue Jul 10 2012 - 10:04:52 CDT)
  • Passerone, Daniele (Fri Jul 06 2012 - 07:01:20 CDT)
  • Passerone, Daniele (Mon Jul 02 2012 - 22:08:28 CDT)
• 3D Stereo : Windows 7, nVIDIA GEFORCE
  • Dipesh Bhattarai (Wed Jan 20 2010 - 16:17:33 CST)
  • Jacob Story (Wed Jan 20 2010 - 11:08:38 CST)
  • Deepangi Pandit (Wed Jan 20 2010 - 09:39:38 CST)
  • John Stone (Wed Jan 20 2010 - 10:05:14 CST)
  • John Stone (Tue Jan 19 2010 - 17:57:23 CST)
  • Deepangi Pandit (Tue Jan 19 2010 - 17:32:04 CST)
• 3D texture mapping
  • Nicola De Mitri (Thu Jan 23 2014 - 04:07:49 CST)
• 3D visualization
  • John Stone (Thu Dec 20 2001 - 14:16:33 CST)
  • John Stone (Thu Dec 20 2001 - 14:09:12 CST)
  • Stephen Koch (Thu Dec 20 2001 - 13:39:17 CST)
• 3D visualization options on Linux boxes
  • John Stone (Thu Jul 05 2012 - 11:39:49 CDT)
  • Vikas Varshney (Thu Jul 05 2012 - 09:35:17 CDT)
  • John Stone (Tue Jul 03 2012 - 12:01:10 CDT)
  • Vikas Varshney (Tue Jul 03 2012 - 12:33:27 CDT)
  • Vikas Varshney (Tue Jul 03 2012 - 11:37:48 CDT)
• 3d visualization setup
  • Anthony Cruz-Balberdy (Sat Feb 23 2019 - 08:35:24 CST)
  • Jordi Bujons (Thu Feb 21 2019 - 10:02:31 CST)
  • Anthony Cruz-Balberdy (Thu Feb 21 2019 - 08:00:02 CST)
  • Anthony Cruz-Balberdy (Sat Feb 16 2019 - 13:47:29 CST)
• 3d visualization VMD / NVIDIA / Linux
  • John Stone (Thu Dec 29 2022 - 11:51:40 CST)
  • Vlad Cojocaru (Wed Nov 02 2022 - 05:26:47 CDT)
• 3d viz?
  • Dave Schall (Mon Aug 29 2011 - 14:45:17 CDT)
  • Dave Schall (Mon Aug 29 2011 - 13:53:05 CDT)
  • Axel Kohlmeyer (Mon Aug 29 2011 - 10:37:24 CDT)
  • Dave Schall (Mon Aug 29 2011 - 09:28:34 CDT)
• 3D-Connexion Space Navigator for Macosx
  • Passerone, Daniele (Fri Jan 04 2013 - 00:47:42 CST)
  • John Stone (Sat Dec 01 2012 - 23:50:34 CST)
  • Passerone, Daniele (Wed Nov 21 2012 - 04:35:43 CST)
• 3D/stereo hardware recommendations wanted!!!
  • John Stone (Fri Jan 14 2005 - 11:29:36 CST)
  • Mads Nørregaard-Madsen (Fri Jan 14 2005 - 05:09:54 CST)
  • Bogdan Costescu (Fri Jan 14 2005 - 04:51:45 CST)
  • Thomas Hedegaard Pedersen (Fri Jan 14 2005 - 02:41:13 CST)
• 3dconnexion spacemouse pro and vmd on fedora 21
  • John Stone (Thu Aug 06 2015 - 13:15:23 CDT)
  • Bennion, Brian (Thu Aug 06 2015 - 12:15:13 CDT)
  • Bennion, Brian (Thu Aug 06 2015 - 11:36:17 CDT)
  • John Stone (Thu Aug 06 2015 - 11:44:00 CDT)
  • John Stone (Thu Aug 06 2015 - 00:32:59 CDT)
  • Bennion, Brian (Wed Aug 05 2015 - 15:02:54 CDT)
• 3Dconnexion SpaceNavigator (OS X)
  • John Stone (Fri May 27 2011 - 14:54:34 CDT)
  • Hans Martin Senn (Wed May 25 2011 - 11:37:51 CDT)
• 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X
  • John Stone (Wed Jul 30 2008 - 10:38:41 CDT)
  • Benjamin Bouvier (Wed Jul 30 2008 - 10:36:17 CDT)
  • John Stone (Wed Jul 30 2008 - 10:25:53 CDT)
  • Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
• 3Dconnexion SpaceTraveler works
  • Eugen Leitl (Fri Jul 14 2006 - 03:43:21 CDT)
  • John Stone (Thu Jul 06 2006 - 13:21:22 CDT)
  • Eugen Leitl (Wed Jul 05 2006 - 08:21:00 CDT)
  • Eugen Leitl (Wed Jul 05 2006 - 07:54:46 CDT)
• 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st)
  • 3D SIG (Fri Apr 15 2011 - 14:38:03 CDT)
• 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st).
  • 3D SIG (Wed Mar 23 2011 - 06:15:19 CDT)
• 3rd party tools- vmd
  • Axel Kohlmeyer (Tue Nov 06 2012 - 13:42:13 CST)
  • Ban Arn (Tue Nov 06 2012 - 11:46:59 CST)
• 4x4 trafo matrices to get "homo-two-protein-complex"
  • Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
  • Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
  • Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
  • Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
  • Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
  • Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
  • Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
• 64 bit NAMD on AIX and CatDCD
  • John Stone (Mon Jan 23 2006 - 13:21:14 CST)
  • Joshua D. Moore (Sat Jan 21 2006 - 13:22:11 CST)
• 64 bit windows VMD
  • John Stone (Tue Jul 28 2015 - 11:36:22 CDT)
  • Ajasja LjubetiÄ� (Mon Jul 27 2015 - 15:22:07 CDT)
  • Hart, David Blaine (Mon Jul 27 2015 - 11:16:11 CDT)
  • Sam Wallace (Mon Jul 27 2015 - 03:06:40 CDT)
• 6DOF controllers
  • John Stone (Sat Jan 08 2000 - 21:23:23 CST)
  • Eugene Leitl (Sat Jan 08 2000 - 20:42:01 CST)
• 780Ti and NAMD2
  • David Hardy (Wed Aug 30 2017 - 10:21:40 CDT)
  • jrhau lung (Wed Aug 30 2017 - 06:14:54 CDT)
• 7th Industrial Fluid Properties Simulation Challenge
  • Joshua D. Moore (Wed May 23 2012 - 11:22:23 CDT)
• 99 Toyotas as low as 2% over invoice
  • accutone_at_atlsky.com (Sat Sep 05 1998 - 19:10:53 CDT)
• : about complexing protein and ligand!
  • Axel Kohlmeyer (Mon Jan 12 2009 - 08:54:21 CST)
  • Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
• << Centering/aligning several molecules >>
  • I. Camps (Fri Dec 30 2022 - 14:43:28 CST)
  • Vermaas, Josh (Fri Dec 30 2022 - 11:00:34 CST)
  • Giacomo Fiorin (Thu Dec 29 2022 - 14:24:54 CST)
  • John Stone (Thu Dec 29 2022 - 13:54:56 CST)
  • I. Camps (Thu Dec 29 2022 - 13:26:04 CST)
• << Different values of RMSD >>
  • I. Camps (Sat Aug 31 2019 - 21:32:53 CDT)
  • Vermaas, Joshua (Thu Aug 29 2019 - 20:25:40 CDT)
  • Vermaas, Joshua (Thu Aug 29 2019 - 17:39:58 CDT)
  • I. Camps (Thu Aug 29 2019 - 12:39:09 CDT)
• << Hbonds distances >>
  • Diego Gomes (Mon Jan 08 2024 - 11:00:08 CST)
  • I. Camps (Fri Jan 05 2024 - 14:06:06 CST)
• << Loading trajectory file in Windows fails >>
  • I. Camps (Thu Aug 29 2019 - 12:40:22 CDT)
  • Vermaas, Joshua (Wed Aug 28 2019 - 10:09:27 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2019 - 09:08:53 CDT)
  • I. Camps (Wed Aug 28 2019 - 07:39:34 CDT)
• << memory issue? >>
  • Axel Kohlmeyer (Wed Mar 30 2022 - 21:05:09 CDT)
  • I. Camps (Wed Mar 30 2022 - 20:04:47 CDT)
• << multiple atom selection >>
  • I. Camps (Sat Jul 23 2022 - 16:48:32 CDT)
  • Axel Kohlmeyer (Sat Jul 23 2022 - 13:02:47 CDT)
  • Axel Kohlmeyer (Sat Jul 23 2022 - 13:03:27 CDT)
  • Zachary SMITH (Sat Jul 23 2022 - 12:20:13 CDT)
  • Ashar Malik (Sat Jul 23 2022 - 12:14:54 CDT)
  • I. Camps (Sat Jul 23 2022 - 11:13:55 CDT)
• << thresholds for drawing bonds >>
  • Axel Kohlmeyer (Tue Dec 27 2022 - 16:12:10 CST)
  • I. Camps (Tue Dec 27 2022 - 14:54:19 CST)
  • John Stone (Tue Dec 27 2022 - 10:10:24 CST)
  • I. Camps (Wed Dec 21 2022 - 13:49:48 CST)
• <<cionize on macOS error>>
  • Ropón-Palacios G. (Mon Sep 25 2023 - 17:23:40 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 17:32:31 CDT)
  • Hasdemir, Hale Siir (Mon Sep 25 2023 - 17:20:19 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2023 - 17:14:53 CDT)
  • Diego Gomes (Mon Sep 25 2023 - 17:13:46 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 16:24:51 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2023 - 16:04:06 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 15:59:39 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2023 - 15:49:35 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 14:52:05 CDT)
  • Castro Martinez, Camila (Mon Sep 25 2023 - 01:49:52 CDT)
  • ROPÓN-PALACIOS G. G. (Sun Sep 24 2023 - 06:57:26 CDT)
• <<measure command>>
  • ROPÓN-PALACIOS G. G. (Sat Sep 23 2023 - 09:16:15 CDT)
  • Diego Gomes (Fri Sep 22 2023 - 11:07:32 CDT)
  • Ropón-Palacios G. (Thu Sep 21 2023 - 16:21:11 CDT)
• <please insert a decent subject here next time, thanks>
  • Axel Kohlmeyer (Mon Mar 09 2009 - 12:08:49 CDT)
• ??startup.command?? can??t be opened because CoreServicesUIAgent is not allowed to open documents in Terminal.
  • Maxim Belkin (Mon Apr 06 2015 - 13:29:18 CDT)
  • 苗家远 (Wed Apr 01 2015 - 15:13:24 CDT)
  • John Stone (Mon Mar 30 2015 - 17:08:23 CDT)
• ?Filesize limit exceeded (core dumped)? with VMD on Linux
  • John Stone (Thu May 26 2022 - 11:47:37 CDT)
• [AMBER] Viewing with VMD bonds set by the "bond" command
  • Francesco Pietra (Fri Mar 09 2012 - 01:39:17 CST)
  • Francesco Pietra (Thu Mar 08 2012 - 12:27:58 CST)
  • Francesco Pietra (Thu Mar 08 2012 - 03:48:48 CST)
• [apbs-users] Missing library on mac
  • Fateme Sadat Emami (Wed May 07 2014 - 14:45:22 CDT)
• [bigdcd.tcl] How to stream output to file
  • Justin Gullingsrud (Thu Mar 03 2005 - 10:33:45 CST)
  • Sascha Tayefeh (Thu Mar 03 2005 - 04:20:38 CST)
• [carlos.simmerling@gmail.com: ACS awards application announcements]
  • John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
• [carlos.simmerling@gmail.com: ACS awards]
  • John Stone (Mon Mar 03 2008 - 20:11:56 CST)
• [Contribute] transparent MacOS X icon for VMD
  • John Stone (Mon Aug 19 2002 - 11:47:21 CDT)
  • MengJuei Hsieh (Fri Aug 16 2002 - 20:54:41 CDT)
  • John Stone (Thu Aug 15 2002 - 17:08:44 CDT)
  • MengJuei Hsieh (Wed Aug 14 2002 - 19:15:49 CDT)
• [EXT] placing graphics objects at fixed locations on the display
  • Goedde, Chris (Tue Oct 06 2020 - 15:32:23 CDT)
• [EXT] Question for Installing Plugin for VMD on Mac
  • Goedde, Chris (Mon Oct 07 2019 - 10:07:46 CDT)
• [EXT] VMD for Mac stopped working after updating to Catalina
  • fabio trovato (Thu Nov 07 2019 - 03:07:59 CST)
  • John Stone (Wed Nov 06 2019 - 23:42:17 CST)
  • Goedde, Chris (Mon Nov 04 2019 - 09:50:29 CST)
• [Fwd: pdb from trajectory] some clarification
  • Peter Freddolino (Wed Jan 24 2007 - 07:55:05 CST)
  • _at_huji.ac.il (Wed Jan 24 2007 - 04:37:40 CST)
  • John Stone (Tue Jan 23 2007 - 13:45:07 CST)
  • Peter Freddolino (Tue Jan 23 2007 - 10:10:59 CST)
  • _at_huji.ac.il (Tue Jan 23 2007 - 09:41:49 CST)
• [Fwd: problems with manipulating control switches on VMS main menu]
  • Axel Kohlmeyer (Fri Oct 31 2008 - 18:05:46 CDT)
  • Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
• [Help] cross-sections
  • Axel Kohlmeyer (Sun Apr 04 2010 - 05:27:44 CDT)
  • Jervis Chu (Sat Apr 03 2010 - 23:18:54 CDT)
• [jfavre@cscs.ch: SC'15 Scientific Visualization Showcase]
  • John Stone (Mon Jul 20 2015 - 15:35:53 CDT)
• [jrodgers78@gmail.com: outputing secondary structure from timeline]
  • Barry Isralewitz (Mon Jan 23 2006 - 15:16:42 CST)
• [lammps-users] Initial configurations / topology for LAMMPS
  • Anna (Thu Jul 14 2011 - 17:17:56 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2011 - 15:29:08 CDT)
• [lammps-users] LAMMPS to VMD: lmp2vmd tool
  • Axel Kohlmeyer (Sat Jun 13 2009 - 17:00:27 CDT)
  • Chetan Mahajan (Wed Jun 10 2009 - 10:00:30 CDT)
  • Axel Kohlmeyer (Wed Jun 10 2009 - 08:36:44 CDT)
  • Chetan Mahajan (Tue Jun 09 2009 - 13:08:16 CDT)
  • Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
• [lammps-users] MDAnalysis (slightly OT)
  • Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
• [lammps-users] NPT/ Missing bonds / atoms & atom overlap
  • Georgia Tsagkaropoulou (Wed Dec 09 2015 - 11:19:25 CST)
• [lammps-users] Regarding rdf from VMD extensions+lammps
  • Axel Kohlmeyer (Tue Apr 29 2014 - 13:37:43 CDT)
• [lammps-users] using topotools to view lammps output
  • Axel Kohlmeyer (Wed Jun 01 2011 - 08:48:04 CDT)
• [linux-elitists] ATI Radeon support (fwd from deejoe@raccoon.com)
  • Eugen Leitl (Tue Dec 14 2004 - 03:33:02 CST)
• [MMTK] Visualization to an image file (fwd from hinsen@cnrs-orleans.fr)
  • Eugen Leitl (Mon Jul 12 2004 - 08:36:58 CDT)
• [OT] pdb files with lots of residues
  • Justin Gullingsrud (Thu Jan 30 2003 - 09:45:07 CST)
  • Jim Phillips (Thu Jan 30 2003 - 09:21:37 CST)
  • gianluca santarossa (Thu Jan 30 2003 - 09:10:23 CST)
• [patch] Autodetection of formats supported by openbabel
  • FX (Mon Nov 24 2008 - 17:05:26 CST)
  • John Stone (Mon Nov 24 2008 - 10:22:47 CST)
  • FX (Thu Nov 20 2008 - 05:07:17 CST)
• [patch] potential CUDA acceleration - load-balancing on different CUDA devices
  • John Stone (Wed Jan 28 2009 - 08:21:58 CST)
  • Martin Aumüller (Wed Jan 28 2009 - 06:35:19 CST)
• [phenixbb] secondary structure presentation in VMD
  • CPMAS Chen (Tue Jan 23 2018 - 11:38:16 CST)
  • CPMAS Chen (Tue Jan 23 2018 - 11:01:48 CST)
  • John Stone (Tue Jan 23 2018 - 11:12:12 CST)
  • John Stone (Mon Jan 22 2018 - 16:03:48 CST)
  • CPMAS Chen (Mon Jan 22 2018 - 15:58:44 CST)
• [philippebopp@yahoo.com: PME calculations]
  • Jim Phillips (Fri Nov 08 2013 - 12:47:05 CST)
• [PyMOL] 3D on linux (fwd)
  • Eugen Leitl (Thu Jan 30 2003 - 09:40:15 CST)
• [PyMOL] enable direct rendering DRI on fedora core 2
  • Jack Howarth (Fri Jun 11 2004 - 07:22:35 CDT)
• [PyMOL] NVidia [7174] Drivers & Nuccyl
  • Sabuj Pattanayek (Fri Apr 01 2005 - 14:24:34 CST)
• [PyMOL] nVidia Driver 7664 for Linux
  • John Stone (Thu Jun 02 2005 - 15:12:06 CDT)
  • sabuj pattanayek (Thu Jun 02 2005 - 13:57:54 CDT)
• [PyMOL] pymol crashes with new [7167] nvidia driver
  • John Stone (Tue Mar 29 2005 - 12:52:55 CST)
  • Sabuj Pattanayek (Tue Mar 29 2005 - 11:55:03 CST)
  • John Stone (Tue Mar 29 2005 - 11:31:14 CST)
  • Sabuj Pattanayek (Tue Mar 29 2005 - 11:11:54 CST)
  • John Stone (Mon Mar 28 2005 - 09:10:09 CST)
  • Sabuj Pattanayek (Sat Mar 26 2005 - 16:45:31 CST)
  • Sabuj Pattanayek (Sat Mar 26 2005 - 16:42:42 CST)
• [request] Best practices for rendering frames and making movies
  • John Stone (Wed Feb 22 2012 - 11:12:27 CST)
  • Axel Kohlmeyer (Tue Feb 21 2012 - 18:29:19 CST)
  • Diego Enry Barreto Gomes (Tue Feb 21 2012 - 17:22:56 CST)
• [selection problem] When I choose all not 'solvent', one residue is gone?v1.8.3
  • Stanley Lan (Fri Oct 28 2005 - 11:47:06 CDT)
• [Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides]
  • Jim Phillips (Wed Feb 15 2012 - 10:24:11 CST)
• [Tech] Colors in VMD
  • Andrew Dalke (Fri Jan 24 1997 - 15:24:38 CST)
  • Chris Upton (Fri Jan 24 1997 - 11:55:13 CST)
  • Andrew Dalke (Fri Jan 24 1997 - 11:44:45 CST)
• [Tech] Customizing VMD: hot keys and popup menus
  • Andrew Dalke (Fri Jan 31 1997 - 12:10:02 CST)
• [topotool] writelammpsdata : custom order for atom types
  • Yann Claveau (Wed May 12 2021 - 08:29:46 CDT)
  • Axel Kohlmeyer (Wed May 12 2021 - 08:20:02 CDT)
  • Yann Claveau (Wed May 12 2021 - 08:12:59 CDT)
  • Axel Kohlmeyer (Wed May 12 2021 - 04:30:22 CDT)
  • Yann Claveau (Wed May 12 2021 - 04:37:01 CDT)
  • Yann Claveau (Wed May 12 2021 - 03:37:29 CDT)
• [topotools]writelammpsdata
  • John Stone (Fri Jul 02 2021 - 11:33:19 CDT)
  • Axel Kohlmeyer (Fri Jun 18 2021 - 08:52:30 CDT)
  • Axel Kohlmeyer (Fri Jun 18 2021 - 07:58:55 CDT)
  • 冯艺漩 (Fri Jun 18 2021 - 07:04:46 CDT)
• [VMD TECH] Tracing VMD Variables (Part II)
  • Alexander Balaeff (Thu May 01 1997 - 16:29:52 CDT)
  • Jeff Ulrich (Wed Apr 30 1997 - 17:42:04 CDT)
• [vmd-l] Graduate assistanship in Bioinformatics at NCSA
  • Gloria Rendon (Wed Mar 28 2007 - 17:45:25 CDT)
• [VMD-NAMD] Question about Dipole of DNA / Dipole Moment Watcher Plugin
  • The Cromicus Productions (Sun Mar 25 2018 - 20:31:45 CDT)
  • Brian Radak (Fri Mar 23 2018 - 10:59:05 CDT)
  • The Cromicus Productions (Thu Mar 22 2018 - 18:17:30 CDT)
• [VMD] Cannot find "cionize" plugin
  • The Cromicus Productions (Mon Aug 13 2018 - 00:03:23 CDT)
  • JC Gumbart (Sun Aug 12 2018 - 10:44:49 CDT)
  • The Cromicus Productions (Fri Aug 10 2018 - 02:35:45 CDT)
  • The Cromicus Productions (Fri Aug 10 2018 - 02:07:11 CDT)
• [vmd] K3b bug?
  • christopher (Sat Jan 27 2007 - 09:15:58 CST)
  • Peter Freddolino (Sat Jan 27 2007 - 08:26:32 CST)
  • Peter Freddolino (Sat Jan 27 2007 - 07:59:55 CST)
  • christopher (Sat Jan 27 2007 - 07:12:57 CST)
• [vmd] max number of molecules on mac
  • John Stone (Tue Jan 17 2006 - 10:06:26 CST)
  • James Rustad (Tue Jan 17 2006 - 09:55:22 CST)
  • Axel Kohlmeyer (Tue Jan 17 2006 - 06:32:23 CST)
  • James Rustad (Mon Jan 16 2006 - 22:27:30 CST)
• [VMD] Measure distance between two selections
  • John Stone (Wed May 31 2017 - 16:34:50 CDT)
  • The Cromicus Productions (Sat May 13 2017 - 17:33:14 CDT)
• [VMD] Obtaining phonon spectrum of DNA
  • The Cromicus Productions (Sat Dec 17 2016 - 00:00:44 CST)
• [VMD] Power-spectrum calculation
  • The Cromicus Productions (Tue Dec 27 2016 - 03:12:38 CST)
• [vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle]
  • Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
• [VMDTECH] Drawing Methods, Part I
  • Andrew Dalke (Fri Mar 07 1997 - 16:22:57 CST)
• [VMDTECH] Drawing Methods, Part II
  • Andrew Dalke (Fri Mar 14 1997 - 16:40:47 CST)
• [VMDTECH] Hingefind
  • Willy Wriggers (Wed Jun 11 1997 - 16:57:22 CDT)
  • Sergei Izrailev (Wed Jun 11 1997 - 16:45:17 CDT)
• [VMDTECH] Making Movies
  • Andrew Dalke (Fri Feb 14 1997 - 12:56:27 CST)
• [VMDTECH] Morphing
  • Andrew Dalke (Fri Mar 28 1997 - 12:14:17 CST)
• [VMDTECH] RMSD and best-fit alignments
  • Andrew Dalke (Fri Feb 07 1997 - 14:37:24 CST)
• [VMDTECH] Schedule Change
  • Andrew Dalke (Fri Apr 18 1997 - 18:07:35 CDT)
• [VMDTECH] Secondary Structure
  • Andrew Dalke (Fri Feb 28 1997 - 16:38:21 CST)
• [VMDTECH] Small things
  • Andrew Dalke (Fri Feb 21 1997 - 13:02:34 CST)
• [VMDTECH] Smoothing Animations
  • Andrew Dalke (Sun Apr 13 1997 - 01:28:43 CDT)
• [VMDTECH] Tracing Atom Picks
  • Andrew Dalke (Fri Apr 04 1997 - 18:27:57 CST)
• [VMDTECH] VMD 1.2b1 is now available
  • Andrew Dalke (Tue Mar 25 1997 - 03:03:32 CST)
  • Andrew Dalke (Tue Mar 25 1997 - 02:09:57 CST)
• [VMDTECH] Working with colors
  • Sergei Izrailev (Tue Jul 01 1997 - 20:21:43 CDT)
• a air box
  • Peter Freddolino (Thu May 10 2007 - 10:25:46 CDT)
  • Axel Kohlmeyer (Thu May 10 2007 - 09:22:45 CDT)
  • SMAHANE CHALABI (Thu May 10 2007 - 08:38:15 CDT)
• a basic question on binding energy
  • Ф¸»¹ó (Mon Sep 03 2012 - 08:51:01 CDT)
• A box of amino acids
  • Richard Wood (Mon Nov 24 2014 - 12:48:33 CST)
  • Ajasja LjubetiÄ� (Mon Nov 24 2014 - 10:54:04 CST)
  • Axel Kohlmeyer (Mon Nov 24 2014 - 10:40:31 CST)
  • Kevin C Chan (Mon Nov 24 2014 - 10:08:52 CST)
• A bug about "trans" command
  • John Stone (Wed Sep 21 2011 - 11:06:17 CDT)
  • KM Tu (Fri Sep 16 2011 - 10:33:49 CDT)
• a common list problem
  • John Stone (Fri May 02 2008 - 10:39:04 CDT)
  • Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
• a detail about PSFGENv1.4
  • Jim Phillips (Wed Feb 02 2011 - 22:45:23 CST)
  • Seth Tanner (Wed Feb 02 2011 - 12:49:37 CST)
• a display problem
  • John Stone (Thu Mar 09 2006 - 10:33:27 CST)
  • lily jin (Thu Mar 09 2006 - 10:22:57 CST)
• A error of " transforming dcd into pdb "
  • Axel Kohlmeyer (Tue Aug 29 2006 - 11:55:49 CDT)
  • John Stone (Tue Aug 29 2006 - 11:51:00 CDT)
  • wang (Tue Aug 29 2006 - 03:02:10 CDT)
  • Leonardo Trabuco (Tue Aug 29 2006 - 10:48:36 CDT)
  • Eduard Schreiner (Tue Aug 29 2006 - 04:46:24 CDT)
  • dimka (Tue Aug 29 2006 - 02:41:47 CDT)
  • dimka (Tue Aug 29 2006 - 02:37:14 CDT)
  • Leonardo Trabuco (Tue Aug 29 2006 - 02:02:52 CDT)
  • wang (Tue Aug 29 2006 - 01:27:52 CDT)
• a few questions about VMD
  • John Stone (Fri Sep 22 2000 - 16:34:17 CDT)
  • Eric Hu (Fri Sep 22 2000 - 16:31:06 CDT)
  • John Stone (Wed Sep 20 2000 - 19:55:26 CDT)
  • Eric Hu (Wed Sep 20 2000 - 17:49:07 CDT)
• a few questions on uninstall, labels, rasmol,seq window
  • John Stone (Fri Apr 11 2003 - 14:49:49 CDT)
  • Y U Sasidhar (Fri Apr 11 2003 - 00:07:51 CDT)
• a file for commands of console
  • Nima Nouri (Sat Jul 30 2011 - 11:56:58 CDT)
  • Ajasja LjubetiÄ� (Sat Jul 30 2011 - 09:40:23 CDT)
  • JhonY. I. (Sat Jul 30 2011 - 08:55:14 CDT)
• A fill for "bodies" build out of surfacs
  • John Stone (Mon May 07 2018 - 16:49:44 CDT)
  • John Stone (Mon May 07 2018 - 14:40:52 CDT)
  • Daniel Möller (Mon May 07 2018 - 05:12:40 CDT)
• a gas box
  • Axel Kohlmeyer (Tue May 15 2007 - 08:22:16 CDT)
  • SMAHANE CHALABI (Tue May 15 2007 - 06:10:05 CDT)
• a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64)
  • Andrew Jewett (Mon Jan 10 2011 - 22:27:39 CST)
  • Andrew Jewett (Mon Jan 10 2011 - 19:56:23 CST)
• a name quesiton
  • lily jin (Fri Apr 07 2006 - 11:19:41 CDT)
• A nanosphere with mass
  • Shubham Mishra (Mon Feb 01 2016 - 12:19:37 CST)
  • Ashar Malik (Mon Feb 01 2016 - 05:30:30 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 04:32:50 CST)
  • Ashar Malik (Mon Feb 01 2016 - 03:51:35 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 02:24:21 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 02:25:09 CST)
  • Ana Celia Vila Verde (Mon Feb 01 2016 - 01:55:14 CST)
  • Axel Kohlmeyer (Mon Feb 01 2016 - 01:47:00 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 01:29:43 CST)
• A patch for OFF import and a question about representation of surfaces
  • John Stone (Tue Jul 12 2011 - 13:22:54 CDT)
  • FX (Sat Jul 02 2011 - 05:08:08 CDT)
• A problem about atomselect command in a script
  • Axel Kohlmeyer (Tue Dec 04 2012 - 02:32:54 CST)
  • Z.Y.Qiu (Mon Dec 03 2012 - 22:53:30 CST)
• a problem about multiplot
  • Jérôme Hénin (Thu Jan 27 2011 - 04:04:55 CST)
  • superdirac (Wed Jan 26 2011 - 21:43:38 CST)
  • superdirac (Wed Jan 26 2011 - 21:09:38 CST)
  • John Stone (Wed Jan 26 2011 - 20:19:47 CST)
  • superdirac (Wed Jan 26 2011 - 20:01:18 CST)
• a problem in visualizing dump files with vmd
  • Axel Kohlmeyer (Tue Feb 23 2010 - 05:44:27 CST)
  • Robabeh Moosavi (Tue Feb 23 2010 - 05:43:46 CST)
• A problem on PBC
  • Axel Kohlmeyer (Thu Jul 16 2009 - 11:56:57 CDT)
  • yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
• a problem on Red Hat Enterprise Linux 5
  • Seungho Choe (Mon Jan 05 2009 - 11:25:16 CST)
  • John Stone (Mon Jan 05 2009 - 16:13:40 CST)
  • Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
• A problem on SASA measure
  • John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
  • yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
• a problem using python in vmd
  • Kristina Woods (Thu Aug 25 2005 - 10:56:15 CDT)
• a problem with installation (to generate the Makefile )
  • Axel Kohlmeyer (Tue Aug 07 2007 - 08:15:36 CDT)
  • John Stone (Mon Aug 06 2007 - 23:56:38 CDT)
  • Panichakorn Jaiyong (Mon Aug 06 2007 - 23:52:26 CDT)
• A query about the deletion of Hydrogen and re-adding them by psfgen
  • Ashar Malik (Tue Dec 09 2014 - 19:44:20 CST)
  • Kshatresh Dutta Dubey (Tue Dec 09 2014 - 17:23:07 CST)
  • Ashar Malik (Tue Dec 09 2014 - 16:50:08 CST)
  • Kshatresh Dutta Dubey (Tue Dec 09 2014 - 09:39:10 CST)
• a question
  • Vlad Cojocaru (Fri Jan 30 2004 - 07:29:38 CST)
  • John Stone (Tue Feb 06 2001 - 09:55:21 CST)
  • cojocaru vlad (Mon Feb 05 2001 - 10:24:40 CST)
• a question about "measure fit"
  • John Stone (Fri Jun 23 2006 - 11:13:26 CDT)
  • dwang_at_cs.kent.edu (Thu Jun 22 2006 - 20:36:59 CDT)
• A question about atomic symbol and cell-border width using VMD
  • Hamza Bouafia (Tue Apr 13 2021 - 18:29:03 CDT)
• a question about dcd files
  • Ana Celia Vila Verde (Thu Feb 02 2006 - 08:32:35 CST)
  • John Stone (Wed Feb 01 2006 - 14:29:15 CST)
  • Ana Celia Vila Verde (Wed Feb 01 2006 - 13:53:39 CST)
• a question about force field toolkit
  • Mayne, Christopher G (Wed Oct 04 2017 - 01:33:51 CDT)
  • JC Gumbart (Tue Oct 03 2017 - 17:25:20 CDT)
  • James Kress (Tue Oct 03 2017 - 16:48:11 CDT)
  • John Stone (Tue Oct 03 2017 - 13:20:16 CDT)
  • Albert (Tue Oct 03 2017 - 12:47:03 CDT)
• a question about g(r)
  • Ana Celia Vila Verde (Thu Mar 03 2016 - 09:30:18 CST)
  • Richard Wood (Thu Mar 03 2016 - 09:35:00 CST)
  • Richard Wood (Thu Mar 03 2016 - 09:04:07 CST)
• a question about get the coordinates in vector form
  • Axel Kohlmeyer (Fri Apr 15 2005 - 16:19:25 CDT)
  • Eugen Leitl (Fri Apr 15 2005 - 15:45:24 CDT)
  • M SH (Fri Apr 15 2005 - 13:31:45 CDT)
• a question about paratool
  • Jan Saam (Thu Feb 22 2007 - 18:43:57 CST)
  • Javaria Ahmad (Tue Feb 20 2007 - 06:35:52 CST)
• a question about ribbon representation
  • John Stone (Wed Apr 12 2006 - 16:04:05 CDT)
  • yzhou_at_chem.umn.edu (Wed Apr 12 2006 - 15:07:27 CDT)
• A question about the namd energy plugin of VMD
  • Axel Kohlmeyer (Sun Oct 26 2008 - 13:12:06 CDT)
  • wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
• A question about the plugin of salt bridge plugin
  • Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
• a question in using PSFGEN
  • Jim Phillips (Tue Apr 27 2004 - 11:04:31 CDT)
  • Yang Yang (Mon Apr 26 2004 - 21:55:45 CDT)
• a question regarding the signalproc package
  • Axel Kohlmeyer (Tue Jul 14 2015 - 11:45:56 CDT)
  • John Stone (Tue Jul 14 2015 - 10:20:04 CDT)
  • Ana Celia Vila Verde (Thu Jul 09 2015 - 10:34:08 CDT)
• A question with dipwatch.tcl script in VMD
  • John Stone (Mon Aug 19 2013 - 10:45:40 CDT)
  • Ganesh Kamath (Sat Aug 17 2013 - 20:32:42 CDT)
  • Boris Steipe (Sat Aug 17 2013 - 16:58:12 CDT)
  • Ganesh Kamath (Sat Aug 17 2013 - 14:10:52 CDT)
• a script for angular distribution
  • David Wedner (Wed Jan 26 2011 - 11:41:51 CST)
  • David Wedner (Wed Jan 26 2011 - 10:44:34 CST)
• a script to count the frames in which some water molecules interact with selected protein atoms
  • Bennion, Brian (Tue Dec 30 2014 - 10:25:41 CST)
  • sunyeping (Tue Dec 30 2014 - 00:39:04 CST)
• a small bug in solvate 1.3
  • John Stone (Thu May 14 2009 - 20:45:17 CDT)
  • Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
• a suggestion and query on command usage
  • John Stone (Tue Jul 05 2005 - 10:06:10 CDT)
  • Eduard Schreiner (Sat Jul 02 2005 - 10:01:53 CDT)
  • cbala_at_igib.res.in (Fri Jul 01 2005 - 08:08:57 CDT)
• A very minor question on the MacOS X native bundle version
  • MengJuei Hsieh (Wed Nov 27 2002 - 01:28:08 CST)
  • John Stone (Sun Nov 24 2002 - 20:43:06 CST)
  • MengJuei Hsieh (Fri Nov 22 2002 - 19:53:57 CST)
• A vmd bug 1.8a28
  • Stéphane Teletchéa (Thu Oct 31 2002 - 08:01:34 CST)
• a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ?
  • Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
• A VMD script to emulate the Matlab "jet" colorscale
  • John Stone (Wed Dec 09 2009 - 11:48:11 CST)
  • John Stone (Tue Dec 08 2009 - 16:49:40 CST)
• a water box containing only the absorbent heads of
  • Axel Kohlmeyer (Thu May 03 2007 - 07:44:05 CDT)
  • SMAHANE CHALABI (Thu May 03 2007 - 03:11:45 CDT)
• a way to create a nice image
  • Axel Kohlmeyer (Sun Feb 22 2009 - 11:16:17 CST)
  • politr_at_huji.ac.il (Sun Feb 22 2009 - 10:52:01 CST)
  • politr_at_huji.ac.il (Sun Feb 22 2009 - 10:51:35 CST)
  • Axel Kohlmeyer (Sat Feb 21 2009 - 11:03:44 CST)
  • politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
• ABF Calculations Question 1
  • McGuire, Kelly (Fri May 25 2018 - 19:22:03 CDT)
  • Brian Radak (Fri May 25 2018 - 12:40:32 CDT)
  • McGuire, Kelly (Fri May 25 2018 - 10:30:48 CDT)
  • Giacomo Fiorin (Fri May 25 2018 - 08:09:32 CDT)
  • Jérôme Hénin (Fri May 25 2018 - 07:43:40 CDT)
  • McGuire, Kelly (Thu May 24 2018 - 12:10:34 CDT)
• ABF lowerboundary upperboundary
  • McGuire, Kelly (Tue May 29 2018 - 13:54:39 CDT)
• ABF Question
  • McGuire, Kelly (Sat May 26 2018 - 13:44:20 CDT)
• ABF tutorial: Methane-Hydration water going -> Water in gas phase?
  • Maximilian Ebert (Sat May 04 2013 - 08:32:23 CDT)
  • JC Gumbart (Sat May 04 2013 - 08:36:41 CDT)
  • JC Gumbart (Sat May 04 2013 - 00:29:25 CDT)
  • Maximilian Ebert (Fri May 03 2013 - 21:13:38 CDT)
  • Maximilian Ebert (Fri May 03 2013 - 20:49:33 CDT)
• abinit plugin for VMD not yet tried?
  • Axel Kohlmeyer (Mon May 25 2009 - 10:05:30 CDT)
  • Rob (Mon May 25 2009 - 02:04:57 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 08:38:11 CDT)
  • Rob (Sun May 24 2009 - 04:31:17 CDT)
  • Axel Kohlmeyer (Fri May 22 2009 - 10:05:14 CDT)
  • Rob (Fri May 22 2009 - 02:08:15 CDT)
• ABINIT plugin ready for testing: can read GEO and DEN files.
  • Axel Kohlmeyer (Thu Jun 18 2009 - 11:13:59 CDT)
  • John Stone (Thu Jun 18 2009 - 09:59:46 CDT)
  • Rob (Thu Jun 18 2009 - 02:27:08 CDT)
  • Axel Kohlmeyer (Wed Jun 17 2009 - 12:01:30 CDT)
  • John Stone (Wed Jun 17 2009 - 11:33:20 CDT)
  • Rob (Wed Jun 17 2009 - 10:59:23 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2009 - 22:59:20 CDT)
  • Rob (Tue Jun 16 2009 - 21:23:22 CDT)
  • John Stone (Tue Jun 16 2009 - 21:33:31 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2009 - 07:31:03 CDT)
  • Rob (Tue Jun 16 2009 - 03:27:28 CDT)
  • Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
  • John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
  • Rob (Mon Jun 15 2009 - 01:32:28 CDT)
• abnormal water surface after nvt and npt for POPC membrane
  • pxq ÅÓÑ©ÇÛ (Tue Oct 27 2009 - 19:57:58 CDT)
• about ".cpmd" format
  • Axel Kohlmeyer (Fri Jun 04 2010 - 00:50:48 CDT)
  • Liu (Thu Jun 03 2010 - 22:31:58 CDT)
• About "Visualization and Analysis of CPMD data with VMD" tutorial
  • Joshua Adelman (Thu Dec 10 2009 - 05:29:17 CST)
  • Aurum Bai (Thu Dec 10 2009 - 02:29:22 CST)
• about adding ions to an ion channel pore
  • Axel Kohlmeyer (Fri Apr 01 2005 - 01:46:50 CST)
  • Xiaoqing Wang (Thu Mar 31 2005 - 20:59:36 CST)
• about analysis plugin
  • John Stone (Thu Jul 12 2012 - 10:29:05 CDT)
  • oguz gurbulak (Fri Jul 06 2012 - 01:39:08 CDT)
  • Axel Kohlmeyer (Wed Jul 04 2012 - 11:09:07 CDT)
  • oguz gurbulak (Wed Jul 04 2012 - 09:40:30 CDT)
• About Atom Index Order
  • Axel Kohlmeyer (Thu Aug 12 2010 - 18:20:52 CDT)
  • Cun Zhang (Thu Aug 12 2010 - 04:58:57 CDT)
  • Axel Kohlmeyer (Thu Aug 12 2010 - 04:52:38 CDT)
  • Cun Zhang (Thu Aug 12 2010 - 03:52:10 CDT)
  • Axel Kohlmeyer (Wed Aug 11 2010 - 22:01:11 CDT)
  • Cun Zhang (Wed Aug 11 2010 - 20:59:08 CDT)
• about atomselect command
  • Marzieh Alishahi (Mon Dec 24 2012 - 11:32:49 CST)
  • Caio S. Souza (Mon Dec 24 2012 - 11:17:24 CST)
  • Marzieh Alishahi (Mon Dec 24 2012 - 09:13:08 CST)
• about average structure
  • Jan Saam (Sun Mar 21 2004 - 05:16:00 CST)
• about CHARMM electrostaic potential
  • ivana adamovic (Mon Feb 05 2007 - 11:56:35 CST)
  • John Stone (Mon Feb 05 2007 - 11:03:04 CST)
  • ivana adamovic (Mon Feb 05 2007 - 09:46:47 CST)
• About CHARMM electrostaic potential map
  • ivana adamovic (Wed Jan 31 2007 - 14:30:11 CST)
  • John Stone (Wed Jan 31 2007 - 13:37:30 CST)
  • ivana adamovic (Wed Jan 31 2007 - 09:26:19 CST)
• about CHARMM electrostatic potential
  • ivana adamovic (Mon Feb 05 2007 - 14:54:15 CST)
  • John Stone (Mon Feb 05 2007 - 14:47:51 CST)
  • ivana adamovic (Mon Feb 05 2007 - 14:44:51 CST)
• About Cluster Plug-in
  • John Stone (Tue Feb 05 2008 - 09:45:23 CST)
  • OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
• about command measure dipole
  • Axel Kohlmeyer (Wed Feb 24 2010 - 13:22:51 CST)
  • matziast_at_med.uth.gr (Wed Feb 24 2010 - 12:37:49 CST)
• about command readpdb?
  • John Stone (Mon Nov 24 2003 - 14:14:21 CST)
  • Li Qiang (Mon Nov 24 2003 - 09:12:11 CST)
• about docking with VMD
  • Nuno Sousa Cerqueira (Wed Jul 20 2011 - 10:32:41 CDT)
  • Cristina Rodríguez (Tue Jul 19 2011 - 17:34:25 CDT)
  • Hui WEI (Tue Jul 19 2011 - 16:37:36 CDT)
• About drawing bonds.
  • John Stone (Wed Apr 24 2002 - 10:11:10 CDT)
  • Luca UvA (Wed Apr 24 2002 - 08:07:32 CDT)
• about dynamical change color of atoms
  • John Stone (Thu Apr 01 2004 - 12:57:33 CST)
  • Emmanouil_Bambakopoulos (Thu Apr 01 2004 - 09:35:40 CST)
• About FFTP with transition metal complexes
  • JC Gumbart (Wed Feb 29 2012 - 20:36:18 CST)
  • Francesco Pietra (Wed Feb 29 2012 - 05:52:03 CST)
  • JC Gumbart (Sat Feb 18 2012 - 16:39:55 CST)
  • Mayne, Christopher G (Sat Feb 18 2012 - 15:39:58 CST)
  • Francesco Pietra (Sat Feb 18 2012 - 00:23:01 CST)
• about frame
  • John Stone (Tue Jan 20 2004 - 10:50:37 CST)
  • moggces_at_rx.mc.ntu.edu.tw (Mon Jan 19 2004 - 20:17:40 CST)
• about gamess plugin
  • John Stone (Thu Sep 29 2005 - 10:59:51 CDT)
  • mashaojienuaa (Thu Sep 29 2005 - 01:40:50 CDT)
  • John Stone (Mon Jun 06 2005 - 12:49:20 CDT)
  • mashaojie163 (Thu Jun 02 2005 - 20:50:59 CDT)
• about graphics accelaration
  • John Stone (Wed May 15 2002 - 11:21:56 CDT)
  • Stéphane Teletchéa (Wed May 15 2002 - 10:47:04 CDT)
  • Stéphane Teletchéa (Mon Apr 15 2002 - 03:22:03 CDT)
  • John Stone (Fri Apr 12 2002 - 12:27:41 CDT)
  • Emanuel Vamvakopoulos (Fri Apr 12 2002 - 11:36:49 CDT)
• About Hydrogen bond calculation
  • ÖÜÎIJý (Thu Nov 13 2008 - 03:20:03 CST)
• about inorganic builder and define variable
  • hamid mosaddeghi (Fri Jan 18 2013 - 04:53:21 CST)
  • Axel Kohlmeyer (Fri Jan 18 2013 - 04:27:40 CST)
  • hamid mosaddeghi (Fri Jan 18 2013 - 03:16:37 CST)
  • Marzieh Alishahi (Fri Jan 18 2013 - 00:51:15 CST)
  • hamid mosaddeghi (Thu Jan 17 2013 - 16:19:23 CST)
• About loading multiple XYZ trajectories
  • Giacomo Fiorin (Wed Apr 18 2018 - 12:18:02 CDT)
  • Gulce Kalyoncu (Wed Apr 18 2018 - 10:51:04 CDT)
• about maximum number of atoms
  • Brian Bennion (Wed Aug 02 2006 - 17:55:28 CDT)
  • John Stone (Wed Aug 02 2006 - 17:25:32 CDT)
  • L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 17:04:07 CDT)
  • John Stone (Wed Aug 02 2006 - 16:53:53 CDT)
  • L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 16:41:16 CDT)
  • John Stone (Wed Aug 02 2006 - 15:39:50 CDT)
  • L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 15:25:41 CDT)
• About mdffi cc
  • John Stone (Thu Aug 06 2015 - 16:29:32 CDT)
  • Ryan McGreevy (Thu Aug 06 2015 - 16:22:17 CDT)
  • Kevin C Chan (Thu Aug 06 2015 - 01:12:27 CDT)
• about measure dihedral angle
  • cong chen (Thu May 08 2008 - 20:53:08 CDT)
• about measuring volume of the binding site
  • John Stone (Sun Feb 15 2009 - 12:59:15 CST)
  • Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
• about new vmd on windows
  • mashaojie163 (Tue Oct 11 2005 - 04:11:24 CDT)
• About occupancy volume maps
  • Axel Kohlmeyer (Thu Jun 19 2008 - 05:20:24 CDT)
  • Ignacio Fernández Galván (Thu Jun 19 2008 - 02:43:11 CDT)
  • John Stone (Thu Jun 19 2008 - 00:38:25 CDT)
  • Ignacio Fernández Galván (Fri Jun 13 2008 - 05:40:17 CDT)
• About open file .pdbqt in VMD software
  • John Stone (Mon Dec 19 2011 - 17:29:30 CST)
• About openning a file to write in callback function
  • Axel Kohlmeyer (Mon Apr 23 2007 - 14:00:35 CDT)
  • preeda (Mon Apr 23 2007 - 12:07:59 CDT)
• about opls-aam ff for small molecules
  • Francesco Pietra (Wed Oct 07 2015 - 16:16:15 CDT)
• about parameter "wrapAll"
  • ×ÞÑ©Çç (Wed Aug 16 2006 - 02:57:26 CDT)
• about paratool
  • Axel Kohlmeyer (Thu Jun 03 2010 - 04:59:08 CDT)
  • Francesco Pietra (Thu Jun 03 2010 - 02:50:05 CDT)
  • Axel Kohlmeyer (Wed Jan 27 2010 - 04:48:11 CST)
  • Caio Veloso (Tue Jan 26 2010 - 11:21:13 CST)
  • saam (Tue Mar 11 2008 - 11:56:45 CDT)
  • laura (Wed Mar 05 2008 - 02:33:41 CST)
  • Francesco Pietra (Wed May 23 2007 - 09:38:40 CDT)
• About PLUMED with NAMD VMD
  • andrea spitaleri (Thu Feb 28 2013 - 02:46:34 CST)
  • John Stone (Wed Feb 27 2013 - 10:10:48 CST)
  • Francesco Pietra (Wed Feb 27 2013 - 02:16:28 CST)
• About psf file
  • Axel Kohlmeyer (Wed Jun 29 2011 - 08:31:02 CDT)
  • safron saif (Wed Jun 29 2011 - 04:02:57 CDT)
• about psf file generation
  • Axel Kohlmeyer (Tue Aug 02 2011 - 07:43:29 CDT)
  • sajad falsafi (Tue Aug 02 2011 - 02:12:54 CDT)
  • safron saif (Mon Aug 01 2011 - 07:22:08 CDT)
• about psfgen patch
  • Jérôme Hénin (Thu Sep 23 2010 - 11:58:38 CDT)
  • Zhang, Jiong (MU-Student) (Thu Sep 23 2010 - 09:20:39 CDT)
• about resid
  • moggces (Thu Nov 20 2003 - 11:16:17 CST)
  • Justin Gullingsrud (Thu Nov 20 2003 - 12:16:35 CST)
• about shape order parameter
  • Emmanuel Vamvakopoulos (Sat May 24 2003 - 07:12:07 CDT)
• About snapshot rendering in VMD-1.9.2
  • Remya Ann (Wed Jul 13 2016 - 02:09:17 CDT)
  • John Stone (Wed Jul 13 2016 - 01:19:05 CDT)
  • Remya Ann (Tue Jul 12 2016 - 12:22:08 CDT)
• about superimposing by VMD
  • John Stone (Fri May 09 2003 - 10:46:46 CDT)
  • Hu, Xiaohua (Wed May 07 2003 - 13:36:47 CDT)
• About Tcl command
  • zhjjvmd (Sun Apr 06 2008 - 01:17:54 CDT)
  • Axel Kohlmeyer (Sun Apr 06 2008 - 00:58:40 CDT)
  • zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
• about tcl program and run tcl script in namd
  • Justin Gullingsrud (Sat Apr 16 2005 - 16:42:52 CDT)
  • Gino (Sat Apr 16 2005 - 01:31:23 CDT)
• About the criterion of H bond
  • Axel Kohlmeyer (Sat Jan 02 2010 - 03:33:38 CST)
  • yongle (Sat Jan 02 2010 - 02:23:18 CST)
• about the diffusion & msd plugin
  • Mayne, Christopher G (Mon Mar 30 2015 - 09:30:13 CDT)
  • M K (Mon Mar 30 2015 - 01:57:12 CDT)
• about the psfgen of vmd
  • John Stone (Tue Mar 21 2006 - 10:37:14 CST)
  • Shulin Zhuang (Tue Mar 21 2006 - 08:46:28 CST)
• About the syntax in Autopsf - Add Patch for PRES PLIG
  • Francesco Pietra (Sun Oct 30 2011 - 10:34:43 CDT)
  • Francesco Pietra (Sun Oct 30 2011 - 03:28:27 CDT)
• about the wrap and unwrap by pbc plugin
  • Kong, Ren (Tue Aug 06 2013 - 11:06:41 CDT)
• about TkConsole
  • cong chen (Wed Apr 08 2009 - 07:27:52 CDT)
  • Axel Kohlmeyer (Tue Apr 07 2009 - 21:32:40 CDT)
  • cong chen (Tue Apr 07 2009 - 20:04:45 CDT)
  • Axel Kohlmeyer (Tue Apr 07 2009 - 12:58:48 CDT)
  • cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
• About using trace
  • John Stone (Fri Apr 20 2007 - 12:02:14 CDT)
  • preeda (Fri Apr 20 2007 - 10:04:09 CDT)
• about viewing charge density
  • John Stone (Sun Apr 02 2006 - 14:37:46 CDT)
  • jun (Sun Apr 02 2006 - 14:00:58 CDT)
• about visualization in VMD
  • Axel Kohlmeyer (Thu Feb 21 2013 - 06:41:45 CST)
  • hamid mosaddeghi (Thu Feb 21 2013 - 05:32:12 CST)
• about vmd
  • John Stone (Wed Dec 29 2004 - 18:07:49 CST)
  • yoongho (Wed Dec 29 2004 - 06:58:51 CST)
• About VMD compile in win32
  • John Stone (Wed Mar 08 2006 - 11:18:25 CST)
  • mustapha.hamdi_at_ensi-bourges.fr (Wed Mar 08 2006 - 12:04:29 CST)
• about vmd solvation plugin
  • David Li (Wed Jun 09 2010 - 05:33:10 CDT)
  • Axel Kohlmeyer (Wed Jun 09 2010 - 07:11:11 CDT)
  • Axel Kohlmeyer (Sat Jun 05 2010 - 19:32:54 CDT)
  • David Li (Sat Jun 05 2010 - 18:31:36 CDT)
• about writepdb
  • cong chen (Mon May 05 2008 - 00:08:53 CDT)
  • JC Gumbart (Mon May 05 2008 - 00:18:00 CDT)
• absolute C.O.M motion calculation script: help
  • John Stone (Fri May 18 2007 - 16:54:42 CDT)
  • hl332_at_drexel.edu (Wed May 16 2007 - 11:06:45 CDT)
• Absolute ruler or position limits of the current view
  • John Stone (Wed Dec 01 2021 - 00:55:03 CST)
  • Philip Loche (Thu Nov 25 2021 - 07:50:20 CST)
• Absolute scaling? "Scale to #" does this?
  • Dallas Warren (Thu Oct 17 2019 - 04:12:08 CDT)
  • Dallas Warren (Mon Oct 07 2019 - 15:28:34 CDT)
• abuot avpos
  • John Stone (Wed Feb 23 2011 - 13:02:12 CST)
  • emiliawu_at_dicp.ac.cn (Thu Feb 24 2011 - 00:57:00 CST)
• Accelerated MD (aMD)
  • Ramin Ekhteiari (Sat Jul 26 2014 - 06:06:25 CDT)
• Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU
  • John Stone (Tue Jun 02 2009 - 10:25:36 CDT)
  • Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
• Access to bond information inside a VMD plugin...
  • Axel Kohlmeyer (Mon Oct 09 2006 - 12:14:55 CDT)
  • Miller, Patrick (Mon Oct 09 2006 - 11:19:54 CDT)
• access to molfile plugin source code
  • Peter Schmidtke (Sat Apr 22 2017 - 17:44:42 CDT)
  • Peter Schmidtke (Sat Apr 22 2017 - 16:20:52 CDT)
• Access to Python libraries from Mandrake8.1
  • Justin Gullingsrud (Sun Mar 03 2002 - 03:16:34 CST)
  • John Stone (Thu Feb 28 2002 - 09:59:42 CST)
  • jen ramus (Wed Feb 27 2002 - 19:08:08 CST)
• Accessible volume around an atom
  • John Stone (Thu Aug 28 2014 - 13:22:56 CDT)
  • Dudo (Thu Aug 28 2014 - 04:55:01 CDT)
  • Ebert Maximilian (Wed Aug 27 2014 - 13:22:29 CDT)
• accessing bonds angles dihedrals etc lists after PSF file is read into VMD
  • Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
  • John Stone (Mon Jan 26 2009 - 15:42:17 CST)
  • Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
  • Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
  • Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
  • John Stone (Thu Jan 22 2009 - 11:33:21 CST)
  • Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
• Accessing Mapped Drive Files on iMac
  • Barry Isralewitz (Fri May 12 2017 - 14:11:13 CDT)
  • Barry Isralewitz (Fri May 12 2017 - 12:01:17 CDT)
• Accessing tachyon optix from commandline and dat file generation
  • John Stone (Tue Apr 04 2017 - 15:30:20 CDT)
  • Andrea Spitaleri (Tue Apr 04 2017 - 05:04:45 CDT)
  • John Stone (Mon Apr 03 2017 - 09:45:35 CDT)
  • Amit Gupta (Mon Apr 03 2017 - 04:16:44 CDT)
  • Andrea Spitaleri (Mon Apr 03 2017 - 02:36:37 CDT)
  • Amit Gupta (Mon Apr 03 2017 - 01:41:09 CDT)
• Accessing TCL through Python interface
  • Daniel B. Faken (Sat May 14 2005 - 15:09:35 CDT)
• accessing values for selection keywords
  • Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
  • Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
• accessing VMD help
  • Robert Campbell (Fri Oct 31 2003 - 09:51:53 CST)
  • Brian Bennion (Fri Oct 31 2003 - 10:14:42 CST)
  • John Robert Kitchin (Fri Oct 31 2003 - 09:22:10 CST)
  • Fernandez-Alonso, F (Felix) (Fri Oct 31 2003 - 07:42:15 CST)
• ACE and NH2
  • ÁèáíÜóéïò Óôáõñáêïýäçò (Tue Jul 03 2007 - 16:37:43 CDT)
  • Peter Freddolino (Tue Jul 03 2007 - 16:46:26 CDT)
• Acetone as solvent
  • Jonasz Sowada (Sat Dec 31 2016 - 17:34:33 CST)
• Acetylation AutoPSF
  • Peter Freddolino (Mon Aug 26 2019 - 19:26:17 CDT)
  • Ernesto Aleksei Delgado Hurtado (Mon Aug 26 2019 - 17:54:26 CDT)
  • Reinke.Patrick_at_mh-hannover.de (Mon Aug 26 2019 - 10:13:01 CDT)
• ACS award information, Oct 15 deadline]
  • John Stone (Tue Aug 24 2010 - 09:48:02 CDT)
• ACS COMP awards announcement
  • John Stone (Wed Sep 06 2017 - 14:27:41 CDT)
• ACS COMP Division awards for Fall 2015 National Meeting in Boston
  • Carlos Simmerling (Thu Feb 05 2015 - 10:55:09 CST)
• ACS COMP Division student and junior faculty awards for Fall 2014 meeting in San Francisco
  • Carlos Simmerling (Tue Feb 18 2014 - 15:30:45 CST)
• ACS COMP division travel awards
  • John Stone (Fri Aug 07 2015 - 11:35:14 CDT)
• ACS COMP Division travel awards for Spring 2015 National Meeting in Denver
  • Carlos Simmerling (Fri Sep 12 2014 - 09:42:32 CDT)
• ACTC Triangle Consolidation
  • John Stone (Fri Dec 12 2003 - 14:32:00 CST)
  • Tyler Luchko (Fri Dec 12 2003 - 12:24:06 CST)
  • John Stone (Fri Dec 12 2003 - 10:06:50 CST)
  • Tyler Luchko (Thu Dec 11 2003 - 16:37:33 CST)
• Action halted on error in ffTK: The following output QM was not recognized
  • JC Gumbart (Tue Jun 09 2020 - 20:12:50 CDT)
  • Valentin Gogonea (Tue Jun 09 2020 - 20:05:05 CDT)
  • JC Gumbart (Tue Jun 09 2020 - 18:03:55 CDT)
  • JC Gumbart (Tue Jun 09 2020 - 12:27:22 CDT)
  • Valentin Gogonea (Mon Jun 08 2020 - 18:16:55 CDT)
• Activation energy
  • Alexis Salas (Thu Aug 19 2004 - 13:33:36 CDT)
• actual simulation time for a frame
  • Axel Kohlmeyer (Thu Sep 11 2014 - 08:38:34 CDT)
  • Dominik Bottländer (Tue Sep 09 2014 - 12:18:57 CDT)
  • Axel Kohlmeyer (Mon Sep 08 2014 - 12:45:34 CDT)
  • Dominik Bottländer (Mon Sep 08 2014 - 12:07:12 CDT)
  • John Stone (Mon Sep 08 2014 - 10:08:18 CDT)
  • Dominik Bottländer (Sat Sep 06 2014 - 01:36:43 CDT)
  • John Stone (Thu Sep 04 2014 - 11:10:30 CDT)
  • Axel Kohlmeyer (Thu Sep 04 2014 - 10:51:44 CDT)
  • Dominik Bottländer (Thu Sep 04 2014 - 10:12:22 CDT)
• acylated and amidated parameters.
  • Bennion, Brian (Wed Nov 14 2012 - 11:52:05 CST)
• AD:Family Reunion T Shirts & More
  • hifiber7_at_compuserve.com (Sat Feb 19 2000 - 11:12:59 CST)
  • hifiber7_at_compuserve.com (Sat Feb 12 2000 - 02:20:20 CST)
• Adaptive real time selection and coloring in default display
  • John Stone (Fri Jun 28 2019 - 11:12:44 CDT)
  • Vermaas, Joshua (Thu Jun 27 2019 - 17:54:01 CDT)
  • Vermaas, Joshua (Thu Jun 27 2019 - 12:04:01 CDT)
  • Giacomo Fiorin (Thu Jun 27 2019 - 11:03:11 CDT)
  • Bart Bruininks (Thu Jun 27 2019 - 10:05:11 CDT)
• Add a gap in my simulation
  • Axel Kohlmeyer (Thu Sep 05 2013 - 13:38:51 CDT)
  • Axel Kohlmeyer (Thu Sep 05 2013 - 14:42:28 CDT)
  • Ali Alizadeh (Thu Sep 05 2013 - 14:41:00 CDT)
  • Ali Alizadeh (Thu Sep 05 2013 - 11:40:46 CDT)
  • Ali Alizadeh (Thu Sep 05 2013 - 11:36:54 CDT)
• add a new color
  • John Stone (Mon Feb 23 2004 - 11:07:41 CST)
  • Vlad Cojocaru (Sun Feb 22 2004 - 12:51:11 CST)
• add a new file to vmd1.8.3 on linux(FC4)
  • John Stone (Tue Nov 01 2005 - 15:09:30 CST)
  • baogen duan (Sun Oct 30 2005 - 21:50:22 CST)
• add a new file type to VMD on linux(FC4)
  • John Stone (Fri Oct 28 2005 - 10:24:32 CDT)
  • John Stone (Fri Oct 28 2005 - 09:55:51 CDT)
  • baogen duan (Thu Oct 27 2005 - 22:32:59 CDT)
• add a new representation style to VMD
  • John Stone (Tue Feb 03 2009 - 09:02:27 CST)
  • Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
• Add a surface to a pdb file
  • Taufik Al-Sarraj (Wed May 05 2010 - 18:53:30 CDT)
  • John Stone (Mon Mar 08 2010 - 14:32:10 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 13:47:43 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 10:05:36 CST)
  • John Stone (Mon Mar 08 2010 - 10:04:00 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
  • John Stone (Mon Mar 08 2010 - 09:25:27 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 08:59:14 CST)
• Add bond across boundaries
  • Passerone, Daniele (Tue May 06 2014 - 09:58:19 CDT)
  • Axel Kohlmeyer (Tue May 06 2014 - 10:06:39 CDT)
  • Axel Kohlmeyer (Tue May 06 2014 - 09:15:13 CDT)
  • Passerone, Daniele (Tue May 06 2014 - 08:25:54 CDT)
• Add H-atoms to Pdb file for NMR
  • John Stone (Tue Apr 20 2004 - 15:06:59 CDT)
  • chandran karunakaran (Tue Apr 20 2004 - 11:22:32 CDT)
• add Mg2+
  • Peter Freddolino (Fri Dec 21 2007 - 11:09:10 CST)
  • Lixia Jin Day (Fri Dec 21 2007 - 10:52:42 CST)
  • John Stone (Wed Dec 19 2007 - 15:37:16 CST)
  • Lixia Jin Day (Wed Dec 19 2007 - 15:27:04 CST)
  • John Stone (Wed Dec 19 2007 - 14:09:30 CST)
  • Lixia Jin Day (Thu Dec 13 2007 - 11:19:06 CST)
• add new color index do VMD
  • Vermaas, Joshua (Wed Nov 20 2019 - 09:47:04 CST)
  • Nuno Cerqueira (Tue Nov 19 2019 - 10:54:52 CST)
• Add solvation box tool
  • Dong Luo (Thu Jun 09 2011 - 09:46:33 CDT)
• Add specific h-bonds
  • Jason Smith (Thu Aug 12 2021 - 10:47:28 CDT)
  • Dawid das (Thu Aug 12 2021 - 08:59:35 CDT)
• Add Topology and Parameters in QwikMD
  • Efthymiou, Christos (Tue Aug 30 2022 - 10:09:37 CDT)
• Add transparent plane to molecular
  • Rob (Tue Jan 30 2007 - 09:05:36 CST)
• Add transparent plane to molecular structure
  • Axel Kohlmeyer (Tue Jan 30 2007 - 11:04:27 CST)
  • Rob (Tue Jan 30 2007 - 03:12:21 CST)
  • Axel Kohlmeyer (Mon Jan 29 2007 - 21:31:50 CST)
  • Rob (Mon Jan 29 2007 - 20:57:38 CST)
• Add user output to DCD trajectories
  • Nima Nouri (Thu Jul 21 2011 - 18:41:05 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2011 - 09:23:45 CDT)
  • Nima Nouri (Thu Jul 14 2011 - 05:18:29 CDT)
• add water on the top of protein border
  • Xiaoqing Wang (Wed Apr 06 2005 - 09:20:24 CDT)
• Add-H for crystallization water only
  • Francesco Pietra (Wed May 09 2012 - 15:08:09 CDT)
• Add/Remove Bonds
  • John Stone (Thu Jun 24 2010 - 16:47:36 CDT)
  • Rabab Toubar (Thu Jun 24 2010 - 12:27:20 CDT)
• add/remove bonds between different types of atoms
  • John Stone (Tue Jan 06 2015 - 13:27:50 CST)
  • Ashar Malik (Mon Jan 05 2015 - 08:27:03 CST)
  • DanLiu (Mon Jan 05 2015 - 05:20:07 CST)
• Addforces
  • Sourav Pal (Mon Jul 17 2017 - 01:11:55 CDT)
• adding 3rdparty plugins in VMD-1.9.1
  • John Stone (Wed Oct 10 2012 - 11:14:27 CDT)
  • Ban Arn (Fri Oct 05 2012 - 07:00:11 CDT)
• Adding a hydrogen through the command line and Molefacture
  • Peter Freddolino (Thu May 24 2018 - 21:57:32 CDT)
  • David Stevens (Thu May 24 2018 - 11:58:39 CDT)
• Adding a keyword to mol addfile
  • Tristan Croll (Thu Jan 30 2014 - 15:07:21 CST)
  • Maxim Belkin (Thu Jan 30 2014 - 09:58:25 CST)
  • Joaquim Rui de Castro Rodrigues (Thu Jan 30 2014 - 08:23:09 CST)
  • Tristan Croll (Wed Jan 29 2014 - 22:39:41 CST)
• Adding a logo to a screenshot
  • John Stone (Fri May 20 2005 - 15:28:47 CDT)
  • Palmer, Teresa (Fri May 20 2005 - 15:12:55 CDT)
• adding a metal ion
  • Joyce Tan (Tue Sep 21 2010 - 20:39:43 CDT)
• adding a representation for a selection which is varying from frame to frame in a trajectory
  • Lena Simine (Thu Apr 21 2016 - 02:19:24 CDT)
• Adding a three letter residue name to VMD's protein recognition
  • John Stone (Fri Nov 11 2011 - 12:24:10 CST)
  • J. Nathan Scott (Thu Oct 27 2011 - 13:13:09 CDT)
• Adding a Water Box
  • Axel Kohlmeyer (Mon Feb 23 2009 - 19:00:55 CST)
  • Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
• adding additional atoms to psf and dcd
  • Vlad Cojocaru (Mon Feb 23 2015 - 04:15:44 CST)
  • Josh Vermaas (Sat Feb 21 2015 - 14:29:49 CST)
  • Vlad Cojocaru (Sat Feb 21 2015 - 03:59:33 CST)
• Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection)
  • Sam Wallace (Sun Nov 13 2011 - 04:58:37 CST)
  • John Stone (Fri Nov 11 2011 - 10:06:58 CST)
  • Sam Wallace (Wed Nov 09 2011 - 16:38:39 CST)
• Adding an atom to the existing pdb
  • Axel Kohlmeyer (Wed May 19 2010 - 06:36:59 CDT)
  • Narasimhan LOGANATHAN (Wed May 19 2010 - 05:18:22 CDT)
• Adding an Implicit Solvation Compatible with below ffTK suggested Methods INQUIRY
  • Joel Subach (Sat May 11 2024 - 10:49:03 CDT)
  • Joel Subach (Wed May 08 2024 - 14:06:02 CDT)
  • Joel Subach (Tue May 07 2024 - 13:26:58 CDT)
• Adding Atoms in Colors Menu
  • Justin Gullingsrud (Fri Apr 02 2004 - 10:18:01 CST)
  • Alexandre Suman de Araujo (Fri Apr 02 2004 - 03:33:52 CST)
• adding atoms to empty molecules
  • Thomas Evangelidis (Tue Jun 02 2009 - 15:57:56 CDT)
  • Axel Kohlmeyer (Tue Jun 02 2009 - 09:22:43 CDT)
  • Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
• adding atomselections?
  • Fatemesadat Emami (Sat May 08 2010 - 22:15:43 CDT)
  • Nicholas Musolino (Sat May 08 2010 - 20:10:24 CDT)
  • Axel Kohlmeyer (Sat May 08 2010 - 19:34:30 CDT)
  • Fatemesadat Emami (Sat May 08 2010 - 19:42:24 CDT)
  • Fatemesadat Emami (Sat May 08 2010 - 18:28:48 CDT)
• Adding bonds between many metal atoms
  • Qiang Fu (Mon Feb 28 2011 - 03:41:34 CST)
  • Axel Kohlmeyer (Fri Feb 25 2011 - 10:33:27 CST)
  • Qiang Fu (Fri Feb 25 2011 - 09:48:45 CST)
• adding bonds between segments
  • Justin Gullingsrud (Thu Feb 19 2004 - 12:28:52 CST)
  • Streiff, John H. (Tue Feb 17 2004 - 14:20:24 CST)
• Adding bonds in a script
  • Ignacio Fernández Galván (Thu Sep 28 2006 - 04:08:08 CDT)
• adding bonds with the mouse and writing psf
  • Axel Kohlmeyer (Fri May 15 2009 - 10:28:59 CDT)
  • John Stone (Thu May 14 2009 - 20:59:20 CDT)
  • Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
• Adding cadmium into protein
  • John Stone (Wed Oct 20 2010 - 10:23:25 CDT)
  • Joyce Tan (Wed Oct 20 2010 - 01:55:36 CDT)
• Adding color scale bar on the screen
  • John Stone (Thu Apr 14 2005 - 20:36:53 CDT)
  • Jay Lee (Thu Apr 14 2005 - 18:50:22 CDT)
• adding free Fe(II) ions?
  • Olya Kravchenko (Mon Apr 25 2016 - 14:25:32 CDT)
  • Ashar Malik (Thu Apr 21 2016 - 05:07:04 CDT)
  • Olya Kravchenko (Wed Apr 20 2016 - 15:01:39 CDT)
• Adding groups
  • Tim Lo (Wed Apr 08 2015 - 09:34:22 CDT)
  • Neelanjana Sengupta (Wed Apr 08 2015 - 09:01:41 CDT)
• adding hydrogen atoms
  • Peter Freddolino (Tue May 02 2006 - 13:00:10 CDT)
  • Naser, Md Abu (Tue May 02 2006 - 09:20:34 CDT)
• Adding hydrogens breaks "protein" atomselection and bonds
  • Josh Vermaas (Wed Mar 16 2016 - 09:29:31 CDT)
  • Axel Kohlmeyer (Wed Mar 16 2016 - 09:20:30 CDT)
  • Peter Freddolino (Wed Mar 16 2016 - 09:23:48 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 09:27:00 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 09:25:33 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 09:01:22 CDT)
  • Peter Freddolino (Wed Mar 16 2016 - 08:55:12 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 06:25:01 CDT)
• Adding Hydroxide Ions to the simulation box
  • Brian Radak (Wed Mar 21 2018 - 09:15:30 CDT)
  • Aman Jindal (Wed Mar 21 2018 - 00:56:31 CDT)
  • Francesco Pietra (Tue Mar 20 2018 - 10:55:21 CDT)
  • Brian Radak (Tue Mar 20 2018 - 09:42:54 CDT)
  • Aman Jindal (Tue Mar 20 2018 - 01:56:10 CDT)
• Adding labels, etc.
  • Justin Gullingsrud (Sun Jul 14 2002 - 12:25:20 CDT)
  • Sanjeev B.S. (Sun Jul 14 2002 - 05:40:26 CDT)
• adding lipid bilayers
  • Goutham (Fri Mar 06 2009 - 08:38:25 CST)
  • Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
  • Goutham (Fri Mar 06 2009 - 00:46:47 CST)
• Adding missing residues
  • Joyce Tan (Thu Jun 09 2011 - 01:50:05 CDT)
• Adding missing residues to a protein
  • sriteja mantha (Wed Feb 02 2011 - 23:40:47 CST)
• adding modified residue into psf file from pdb
  • Bennion, Brian (Mon Jan 13 2020 - 17:20:32 CST)
• adding new atoms to a molecule from a script
  • Eduard Schreiner (Thu Oct 05 2006 - 08:20:54 CDT)
  • Enzo Vitale (Thu Oct 05 2006 - 05:20:55 CDT)
• Adding New Color Definitions to Color Form
  • John Stone (Tue Jan 24 2006 - 10:11:21 CST)
  • Adrian Koh (Tue Jan 24 2006 - 03:08:48 CST)
• adding new colors
  • Leonhard Henkes (Thu Mar 13 2014 - 09:21:57 CDT)
• Adding other online PDB data bases to VMD
  • John Stone (Tue Jul 20 2010 - 10:52:25 CDT)
  • Axel Kohlmeyer (Fri Jul 16 2010 - 19:58:22 CDT)
  • Ian Stokes-Rees (Fri Jul 16 2010 - 18:46:31 CDT)
• Adding oxygen molecules
  • Kiana Jahani (Thu Jul 15 2021 - 04:12:50 CDT)
• adding patches via autopsf
  • Bennion, Brian (Wed Mar 21 2012 - 11:34:47 CDT)
• adding residue at start or end
  • Peter Freddolino (Tue Jun 19 2007 - 12:41:10 CDT)
  • Zhenwei Lu (Tue Jun 19 2007 - 10:58:30 CDT)
• Adding residues to dowser
  • John Stone (Mon Oct 03 2016 - 15:42:23 CDT)
  • nikolaev_at_spbau.ru (Thu Sep 29 2016 - 16:32:10 CDT)
• Adding Salt to a system
  • Ioana Cozmuta (Wed Jun 22 2005 - 20:59:47 CDT)
  • Thomas C. Bishop (Thu May 19 2005 - 10:09:26 CDT)
• adding selections
  • Axel Kohlmeyer (Fri Oct 20 2006 - 14:03:56 CDT)
  • Myunggi Yi (Fri Oct 20 2006 - 13:04:21 CDT)
• Adding Single Residues to a Protein
  • John Stone (Tue Jul 20 2010 - 14:59:19 CDT)
  • Anwaar Al-Zireeni (Thu Jul 15 2010 - 18:34:56 CDT)
• adding solvation box
  • Ashar Malik (Thu Dec 11 2014 - 15:05:14 CST)
  • Kshatresh Dutta Dubey (Thu Dec 11 2014 - 09:53:24 CST)
• Adding Topology+Parameter For Small Molecule in QwikMD
  • Efthymiou, Christos (Tue Aug 09 2022 - 08:09:41 CDT)
• Adding two separate pdb files: Lipid Bilayer's with Protein's
  • Axel Kohlmeyer (Wed May 20 2009 - 16:34:45 CDT)
  • Lalit (Wed May 20 2009 - 13:36:56 CDT)
  • David Tanner (Tue May 19 2009 - 11:00:30 CDT)
  • Lalit (Mon May 18 2009 - 18:07:34 CDT)
• adding urea to a protein-water system
  • L. Michel Espinoza-Fonseca (Mon Jul 30 2007 - 05:05:46 CDT)
• adding water box
  • John Stone (Tue May 18 2010 - 12:36:24 CDT)
  • Hao Sun (Mon May 17 2010 - 19:09:57 CDT)
  • Hao Sun (Mon May 17 2010 - 19:09:36 CDT)
• Adding water in protein
  • Axel Kohlmeyer (Mon Sep 19 2011 - 07:01:15 CDT)
  • madhumita das (Mon Sep 19 2011 - 06:01:15 CDT)
• adding waters only in top of lipid
  • Justin Gullingsrud (Thu Feb 19 2004 - 12:30:36 CST)
  • Satyavani Vemparala (Tue Feb 17 2004 - 12:15:55 CST)
• addition on CHARMM electrostatic pot.
  • ivana adamovic (Fri Feb 02 2007 - 09:11:44 CST)
  • John Stone (Thu Feb 01 2007 - 17:27:36 CST)
  • ivana adamovic (Thu Feb 01 2007 - 13:42:08 CST)
• Adjacent surface?
  • John Stone (Mon Aug 22 2005 - 11:05:33 CDT)
  • Brian Bennion (Thu Aug 18 2005 - 14:24:07 CDT)
  • paul d jones (Thu Aug 18 2005 - 07:54:31 CDT)
• Adjusting perspective
  • John Stone (Mon May 28 2007 - 15:57:51 CDT)
  • Cesar Luis Avila (Thu May 24 2007 - 11:33:40 CDT)
• Adjusting R/S configuration
  • Peter Freddolino (Sat Aug 11 2007 - 08:43:09 CDT)
  • Francesco Pietra (Sat Aug 11 2007 - 02:21:47 CDT)
• Adsorption and diffusion
  • Axel Kohlmeyer (Tue Dec 14 2010 - 04:21:44 CST)
  • candy deck (Tue Dec 14 2010 - 03:38:53 CST)
• Adsorption VMD Tcl script error
  • Axel Kohlmeyer (Wed Feb 29 2012 - 16:56:31 CST)
  • Ajasja LjubetiÄ� (Wed Feb 29 2012 - 16:09:59 CST)
  • John Stone (Wed Feb 29 2012 - 14:05:21 CST)
  • vladanstefanovic_at_kg.ac.rs (Wed Feb 29 2012 - 13:51:58 CST)
• advanced python console
  • Axel Kohlmeyer (Tue Sep 04 2007 - 09:18:34 CDT)
  • Gianluca Santarossa (Tue Sep 04 2007 - 09:17:45 CDT)
• advanced selections (or explicit pair list) for measure gofr ?
  • Axel Kohlmeyer (Fri Oct 24 2008 - 10:31:13 CDT)
  • Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
• Advantages of new RTX/Turing NVidia cards?
  • Pawel Kedzierski (Thu Oct 11 2018 - 06:13:47 CDT)
  • John Stone (Wed Oct 10 2018 - 10:21:13 CDT)
  • Pawel Kedzierski (Wed Oct 10 2018 - 03:55:13 CDT)
• advice for a PCI video card on redhat
  • John Stone (Wed May 28 2003 - 15:49:07 CDT)
• Affordable 3D stereo.
  • John Stone (Wed Jan 31 2018 - 11:17:54 CST)
  • sperez14_at_us.es (Tue Jan 30 2018 - 06:12:02 CST)
• again :resid of water that is H bonded
  • nahren manuel (Mon Aug 25 2008 - 21:55:40 CDT)
• again about average strutcure
  • li (Tue Mar 18 2008 - 17:31:26 CDT)
• Aggregation analysis
  • John Stone (Wed Aug 29 2007 - 00:21:48 CDT)
  • zhenlong li (Thu Aug 23 2007 - 10:07:49 CDT)
• Alascan plugin error
  • Brandon Havranek (Fri Aug 13 2021 - 23:23:25 CDT)
• Alascan, psfgen errors
  • Matthew Kenney (Thu Aug 02 2018 - 17:19:16 CDT)
• alchemical transformations
  • Chiara Cardelli (Tue Apr 22 2014 - 04:19:29 CDT)
  • Axel Kohlmeyer (Mon Apr 21 2014 - 11:18:16 CDT)
  • Josh Vermaas (Mon Apr 21 2014 - 10:24:57 CDT)
  • Chiara Cardelli (Mon Apr 21 2014 - 04:21:58 CDT)
  • Fotis Baltoumas (Mon Apr 21 2014 - 03:36:26 CDT)
  • Chiara Cardelli (Sun Apr 20 2014 - 13:19:41 CDT)
• algorithm for command *within*
  • Thomas Evangelidis (Fri Jul 17 2009 - 03:30:45 CDT)
  • BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
  • John Stone (Thu Jul 16 2009 - 11:32:50 CDT)
• algorithm for finding center of mass of the side chains in the protein
  • Ramya Gamini (Fri Aug 29 2008 - 14:28:15 CDT)
  • aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
• Algorithm for RMSD and alignment
  • Ignacio Fernández Galván (Tue Oct 26 2010 - 11:47:18 CDT)
• Alias histidine residue
  • Roman Petrenko (Sat Sep 13 2008 - 22:04:46 CDT)
  • Roman Petrenko (Sat Sep 13 2008 - 22:07:46 CDT)
  • Axel Kohlmeyer (Sat Sep 13 2008 - 09:09:31 CDT)
  • Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
• Align a PORTION of several structures
  • Shirley Li (Fri Oct 15 2004 - 09:33:00 CDT)
  • Justin Gullingsrud (Thu Oct 14 2004 - 09:54:45 CDT)
  • Shirley Li (Wed Oct 13 2004 - 18:05:01 CDT)
• Align a trajectory
  • Axel Kohlmeyer (Thu Mar 19 2015 - 10:08:57 CDT)
  • Ryan McGreevy (Thu Mar 19 2015 - 10:29:00 CDT)
  • Kevin C Chan (Thu Mar 19 2015 - 07:35:06 CDT)
• align and superimpose crd structures.
  • Margaret Shun Cheung (Wed Jun 21 2006 - 17:16:41 CDT)
  • John Stone (Wed Jun 21 2006 - 17:03:38 CDT)
  • Margaret Shun Cheung (Wed Jun 21 2006 - 17:02:10 CDT)
  • Margaret Shun Cheung (Wed Jun 21 2006 - 13:47:56 CDT)
  • John Stone (Wed Jun 21 2006 - 13:34:48 CDT)
  • John Stone (Wed Jun 21 2006 - 13:32:33 CDT)
  • Margaret Shun Cheung (Wed Jun 21 2006 - 09:12:37 CDT)
• align axes
  • Toni Giorgino (Thu Jun 23 2011 - 14:50:14 CDT)
  • Axel Kohlmeyer (Thu Jun 23 2011 - 13:42:44 CDT)
  • Adrian Roitberg (Wed Jun 22 2011 - 14:17:50 CDT)
• align electron density map onto simulated structure (with different center)
  • John Stone (Tue Apr 17 2012 - 00:13:31 CDT)
  • Magnus Andersson (Sun Apr 15 2012 - 18:42:21 CDT)
• Align membrane
  • Ale Gomez (Fri Oct 16 2009 - 19:18:41 CDT)
  • Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
  • Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
• Align mistake
  • John Stone (Tue May 19 2009 - 20:32:52 CDT)
  • Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
• align molecules using "anchor" atoms
  • Xing (Tue Sep 15 2015 - 22:10:11 CDT)
  • Axel Kohlmeyer (Tue Sep 15 2015 - 15:41:30 CDT)
  • Xing (Tue Sep 15 2015 - 12:08:03 CDT)
  • John Stone (Tue Sep 15 2015 - 10:58:02 CDT)
  • Xing (Tue Sep 15 2015 - 10:34:25 CDT)
• Align only translation not rotation
  • Ajasja LjubetiÄ� (Tue Sep 15 2015 - 03:20:41 CDT)
  • Simon Dürr (Mon Sep 14 2015 - 10:16:08 CDT)
• Align protein with different number of aminoacid
  • Luis Gracia (Thu Feb 10 2005 - 22:35:16 CST)
  • Eduard Schreiner (Fri Feb 11 2005 - 04:42:24 CST)
  • matteo.pennestri_at_virgilio.it (Thu Feb 10 2005 - 16:42:50 CST)
• Align specific residues of two structures
  • Ivan Gregoretti (Fri Mar 28 2014 - 16:57:16 CDT)
  • Hailin Huang (Fri Mar 28 2014 - 15:37:37 CDT)
• align two molecules with index
  • Zhenyu Lu (Thu Apr 28 2005 - 17:42:23 CDT)
• Aligning a dcd file of a protein consisting two chains
  • Vermaas, Joshua (Tue Aug 09 2016 - 11:42:07 CDT)
  • Vermaas, Joshua (Thu Aug 04 2016 - 11:06:56 CDT)
  • kim, stephanie S. (Thu Aug 04 2016 - 09:02:38 CDT)
  • Vermaas, Joshua (Wed Aug 03 2016 - 13:24:32 CDT)
  • kim, stephanie S. (Wed Aug 03 2016 - 11:31:37 CDT)
• Aligning Desmond Trajectories again
  • Irene Newhouse (Mon Mar 15 2010 - 15:05:46 CDT)
• aligning molecules with different number of atoms
  • Leandro Martínez (Mon Feb 12 2007 - 12:39:29 CST)
  • Leonardo Trabuco (Mon Feb 12 2007 - 12:05:28 CST)
  • John Stone (Mon Feb 12 2007 - 12:01:58 CST)
  • JC Gumbart (Mon Feb 12 2007 - 11:58:12 CST)
  • namd vmd (Mon Feb 12 2007 - 11:53:49 CST)
• aligning molecules with modes from ProDy
  • L. Signorile (Thu Oct 13 2016 - 06:32:24 CDT)
• aligning multiple trajectories to a single .pdb file
  • andrew ritchie (Wed May 18 2011 - 13:30:54 CDT)
• Aligning of ions and DNA
  • angad sharma (Sun Jan 08 2023 - 03:00:11 CST)
• aligning one molecule
  • Himanshu Khandelia (Wed Feb 14 2007 - 17:30:18 CST)
  • s.schweizer_at_dkfz-heidelberg.de (Wed Feb 14 2007 - 08:47:41 CST)
• Aligning portions of proteins
  • Anjela Manandhar (Sun Mar 01 2015 - 20:06:02 CST)
• aligning protein based on one helix of protein
  • John Stone (Wed Oct 31 2007 - 17:25:50 CDT)
  • maria goranovic (Wed Oct 31 2007 - 13:14:12 CDT)
  • maria goranovic (Wed Oct 31 2007 - 08:48:29 CDT)
• Aligning structures
  • Marcos Sotomayor (Fri Mar 10 2006 - 10:19:43 CST)
  • Richard Wood (Thu Mar 09 2006 - 21:20:45 CST)
• aligning trajectories
  • maria goranovic (Tue Nov 24 2009 - 04:22:54 CST)
• Aligning two proteins of varying atom numbers
  • ban arn (Sun May 22 2011 - 16:25:11 CDT)
  • Gianluca Interlandi (Fri May 20 2011 - 11:26:25 CDT)
  • ban arn (Fri May 20 2011 - 09:04:53 CDT)
  • ban arn (Fri May 20 2011 - 06:37:47 CDT)
  • Axel Kohlmeyer (Fri May 20 2011 - 05:47:18 CDT)
  • ban arn (Fri May 20 2011 - 04:23:12 CDT)
  • Eduard Schreiner (Thu May 19 2011 - 12:07:00 CDT)
  • ban arn (Thu May 19 2011 - 11:37:40 CDT)
  • Joseph Bylund (Thu May 19 2011 - 11:31:52 CDT)
  • Axel Kohlmeyer (Thu May 19 2011 - 11:17:37 CDT)
  • ban arn (Thu May 19 2011 - 10:43:10 CDT)
• aligning- on top of the bilayer
  • lara lara (Wed Oct 06 2010 - 00:11:00 CDT)
• alignment
  • Axel Kohlmeyer (Fri Jun 19 2009 - 10:56:09 CDT)
  • Alison Grinthal (Fri Jun 19 2009 - 09:45:28 CDT)
  • Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
  • Giovanni Bellesia (Mon Nov 05 2007 - 12:10:58 CST)
  • Zhaochuan Shen (Mon Nov 05 2007 - 11:41:52 CST)
  • John Stone (Sun Nov 04 2007 - 13:53:06 CST)
  • John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
  • Zhaochuan Shen (Thu Nov 01 2007 - 16:52:12 CDT)
• Alignment and RMSD calculation
  • Tran, Tran (Tue Oct 04 2016 - 11:12:15 CDT)
  • John Stone (Mon Oct 03 2016 - 16:02:47 CDT)
  • Ashar Malik (Tue Sep 27 2016 - 21:46:17 CDT)
  • Tran, Tran (Tue Sep 27 2016 - 20:18:31 CDT)
• alignment and rmsd fit
  • John Stone (Fri Nov 08 2002 - 17:00:06 CST)
  • Marcela Madrid (Fri Nov 08 2002 - 16:16:38 CST)
• Alignment issues
  • Ashar Malik (Wed Jan 24 2018 - 08:02:02 CST)
  • Heather Carson (Wed Jan 24 2018 - 07:18:44 CST)
• alignment of two the same structures
  • Tristan Croll (Tue Dec 08 2015 - 00:59:06 CST)
  • Marta Wisniewska (Fri Dec 04 2015 - 11:45:39 CST)
• alignment problem
  • Markus K. Dahlgren (Mon Oct 10 2011 - 10:29:40 CDT)
• alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction?
  • maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
• Alignment Python
  • Per Jr. Greisen (Fri Aug 11 2006 - 05:19:15 CDT)
• Alignment with RMSD trajectory tool
  • Ashar Malik (Tue May 29 2018 - 21:00:08 CDT)
  • Gulce Kalyoncu (Tue May 29 2018 - 20:42:15 CDT)
• aligntool
  • Barry Isralewitz (Thu Feb 13 2003 - 19:33:38 CST)
  • Ioana Cozmuta (Thu Feb 13 2003 - 17:43:44 CST)
• aligntool docs?...
  • John Stone (Tue Jan 21 2003 - 15:36:56 CST)
  • Joshua Speidel (Tue Jan 21 2003 - 15:03:36 CST)
• All that I never took the time to ask about VMD ...
  • John Stone (Fri Sep 06 2002 - 14:51:50 CDT)
  • Marc Baaden (Sat Aug 31 2002 - 07:14:29 CDT)
• all within selection
  • Guanglei Cui (Thu Aug 11 2005 - 12:32:32 CDT)
  • John Stone (Thu Aug 11 2005 - 11:56:29 CDT)
  • Guanglei Cui (Thu Aug 11 2005 - 10:55:39 CDT)
• allowing negative 'resid' numbers in selection strings
  • Vlad Cojocaru (Fri Jan 08 2010 - 09:10:02 CST)
  • Axel Kohlmeyer (Fri Jan 08 2010 - 08:49:01 CST)
  • Vlad Cojocaru (Fri Jan 08 2010 - 07:56:16 CST)
• Alpha to beta conversion
  • Giacomo Fiorin (Wed May 15 2019 - 08:45:46 CDT)
  • Kalyanashis Jana (Wed May 15 2019 - 04:17:08 CDT)
• alpha-quartz with hydrogen bond
  • Suu Kyi, Myat Noe (Tue May 29 2018 - 10:46:49 CDT)
• Alpha-RMSD
  • Jevgenij Raskatov (Thu May 28 2015 - 17:31:48 CDT)
  • Barry Isralewitz (Thu May 28 2015 - 17:29:54 CDT)
  • Ashar Malik (Thu May 28 2015 - 17:16:23 CDT)
  • Ashar Malik (Thu May 28 2015 - 17:14:24 CDT)
  • Ashar Malik (Wed May 27 2015 - 21:54:20 CDT)
  • Jevgenij Raskatov (Wed May 27 2015 - 20:25:27 CDT)
• alter crosshair appearance
  • Barry Isralewitz (Fri Jun 22 2018 - 13:18:31 CDT)
  • John Stone (Fri Jun 22 2018 - 03:15:09 CDT)
  • Daniel Strahs (Thu May 24 2018 - 12:48:30 CDT)
• Altering Definition of Molecular Coloring Method
  • Axel Kohlmeyer (Tue Aug 01 2006 - 07:29:44 CDT)
  • Adrian Koh (Mon Jul 31 2006 - 23:18:19 CDT)
  • Peter Freddolino (Mon Jul 31 2006 - 09:05:16 CDT)
  • Adrian Koh (Mon Jul 31 2006 - 05:08:56 CDT)
• Altering extrabonds force constant during MD
  • Bryan Roessler (Tue Apr 15 2014 - 09:52:18 CDT)
  • Axel Kohlmeyer (Mon Apr 14 2014 - 16:56:59 CDT)
  • Bryan Roessler (Mon Apr 14 2014 - 16:11:28 CDT)
• Altering water sphere and charmm type
  • shgnwgn_at_eden.rutgers.edu (Mon Jul 25 2005 - 10:50:50 CDT)
• alternative display mode of HBonds
  • John Stone (Tue Apr 04 2006 - 14:46:46 CDT)
  • Jean Richelle (Tue Apr 04 2006 - 09:51:18 CDT)
• altloc pdb entries
  • Bennion, Brian (Thu Aug 15 2024 - 00:33:18 CDT)
  • Josh Vermaas (Wed Aug 14 2024 - 09:44:24 CDT)
  • Bennion, Brian (Tue Aug 13 2024 - 19:47:41 CDT)
• AMBER (old ?) nucleic acids names not recognised
  • Teletchéa Stéphane (Fri Nov 21 2003 - 03:57:04 CST)
• Amber calculated structure(PDB) visualization in pymol vs chimera vs vmd
  • V. Kumar (Wed Dec 02 2015 - 17:16:46 CST)
• AMBER coordinates with periodic box
  • John Stone (Wed Jul 20 2011 - 13:41:23 CDT)
  • Guenegou, Guillaume [ORDFR] (Tue Jul 19 2011 - 08:18:44 CDT)
• amber generated netcdf trajectories
  • John Stone (Tue Apr 07 2020 - 13:23:14 CDT)
  • Vlad Cojocaru (Tue Apr 07 2020 - 13:11:39 CDT)
  • Vlad Cojocaru (Mon Jan 06 2020 - 14:45:40 CST)
  • John Stone (Mon Jan 06 2020 - 14:20:06 CST)
  • John Stone (Thu Dec 19 2019 - 08:22:10 CST)
  • Luthaf (Thu Dec 19 2019 - 07:09:50 CST)
  • Vlad Cojocaru (Thu Dec 19 2019 - 03:46:08 CST)
  • John Stone (Wed Dec 18 2019 - 10:19:26 CST)
  • Vlad Cojocaru (Wed Dec 18 2019 - 07:25:11 CST)
• AMBER parmfiles
  • John Stone (Mon Mar 17 2003 - 10:06:11 CST)
  • Patrick Ladam (Mon Mar 17 2003 - 05:24:31 CST)
• Amber patches for Auto PSF generator
  • Peter Freddolino (Wed Jun 27 2007 - 12:04:09 CDT)
  • Bob Johnson (Wed Jun 27 2007 - 11:55:44 CDT)
• AMBER pbsa electrostatic potential map
  • John Stone (Tue Apr 19 2005 - 21:16:05 CDT)
  • Mengjuei Hsieh (Tue Apr 19 2005 - 18:05:49 CDT)
  • John Stone (Tue Apr 19 2005 - 16:11:51 CDT)
  • John Stone (Tue Apr 19 2005 - 10:22:21 CDT)
  • Alexander Spaar (Tue Apr 19 2005 - 03:58:55 CDT)
  • John Stone (Mon Apr 18 2005 - 10:13:39 CDT)
  • Mengjuei Hsieh (Fri Apr 15 2005 - 20:09:09 CDT)
• Amber periodic images
  • John Stone (Thu Apr 29 2004 - 13:52:17 CDT)
  • John Stone (Thu Apr 29 2004 - 13:49:52 CDT)
  • Jim Shepherd (Thu Apr 29 2004 - 13:41:23 CDT)
  • John Stone (Thu Apr 29 2004 - 10:56:26 CDT)
  • Xiang, Tian-Xiang (Wed Apr 28 2004 - 10:25:09 CDT)
• AMBER prmtop and traj to pqr - radii error
  • Jesper Soerensen (Mon Oct 17 2011 - 18:58:53 CDT)
• Amber prmtop/inpcrd files
  • John Stone (Thu Aug 28 2003 - 15:46:52 CDT)
  • John Stone (Thu Jul 31 2003 - 18:01:25 CDT)
  • Teletchéa Stéphane (Thu Jul 31 2003 - 15:44:32 CDT)
  • caldwell_at_heimdal.compchem.ucsf.edu (Thu Jul 31 2003 - 14:22:12 CDT)
  • Teletchéa Stéphane (Thu Jul 31 2003 - 12:49:27 CDT)
  • John Stone (Thu Jul 31 2003 - 11:44:38 CDT)
  • Anshul Shah (Mon Jul 28 2003 - 17:17:29 CDT)
  • Anshul Shah (Mon Jul 28 2003 - 15:45:05 CDT)
• Amber rst7 not loading
  • Sophia Hirakis (Wed Jun 20 2018 - 20:25:28 CDT)
• amber traj to pqr - radii error
  • John Stone (Thu Oct 13 2011 - 10:25:45 CDT)
  • Jesper Soerensen (Mon Oct 10 2011 - 15:41:54 CDT)
  • Axel Kohlmeyer (Mon Oct 10 2011 - 13:40:51 CDT)
  • Jesper Soerensen (Mon Oct 10 2011 - 12:42:30 CDT)
• amber trajectory
  • John Stone (Wed Jun 18 2003 - 09:55:39 CDT)
  • Oscar Moran (Wed Jun 18 2003 - 03:17:58 CDT)
  • John Stone (Tue Dec 17 2002 - 23:44:51 CST)
  • Ioana Cozmuta (Tue Dec 17 2002 - 23:15:55 CST)
• Amber trajectory loading
  • John Stone (Wed Apr 21 2004 - 13:22:49 CDT)
  • Xiang, Tian-Xiang (Wed Apr 21 2004 - 10:03:48 CDT)
• AMBER trajectory visualization
  • John Stone (Sun Dec 04 2016 - 21:25:34 CST)
  • James Kress (Sun Dec 04 2016 - 20:40:39 CST)
  • John Stone (Sat Dec 03 2016 - 22:48:02 CST)
  • James Kress (Sat Dec 03 2016 - 20:33:16 CST)
• Amber visualization problem
  • John Stone (Thu Feb 02 2017 - 23:53:12 CST)
  • Hannes Loeffler (Wed Feb 01 2017 - 03:09:52 CST)
  • Radak, Brian K (Tue Jan 31 2017 - 14:05:37 CST)
  • Albert (Tue Jan 31 2017 - 10:09:50 CST)
• AMBER6 format
  • MengJuei Hsieh (Tue Nov 19 2002 - 16:02:55 CST)
  • John Stone (Mon Nov 18 2002 - 00:20:19 CST)
  • MengJuei Hsieh (Mon Nov 04 2002 - 17:22:44 CST)
  • John Stone (Mon Nov 04 2002 - 14:56:12 CST)
  • MengJuei Hsieh (Mon Nov 04 2002 - 14:39:52 CST)
• AMBER9 netcdf trajectory loading
  • John Stone (Wed Jul 26 2006 - 13:27:37 CDT)
  • Fabian Boes (Fri Jul 21 2006 - 08:00:30 CDT)
• Ambient occlusion / Electrostatic surfaces
  • John Stone (Thu Dec 31 2020 - 13:44:41 CST)
  • John Stone (Fri Nov 20 2020 - 14:19:24 CST)
  • John Stone (Fri Nov 20 2020 - 12:58:14 CST)
  • Lothar Esser (Fri Nov 20 2020 - 12:30:57 CST)
• Ambient/direct light missing after adding Glow lights to a tachyon scene with glow_lights.tcl
  • Oliver Grant (Fri Oct 19 2018 - 10:07:41 CDT)
  • John Stone (Fri Oct 19 2018 - 08:37:46 CDT)
  • Oliver Grant (Fri Oct 19 2018 - 06:04:37 CDT)
• AMD vs. nvidia support
  • Axel Kohlmeyer (Thu Dec 12 2013 - 04:32:46 CST)
  • Bogdan Costescu (Thu Dec 12 2013 - 04:16:48 CST)
  • Axel Kohlmeyer (Thu Dec 12 2013 - 00:04:44 CST)
  • Bennion, Brian (Wed Dec 11 2013 - 12:50:36 CST)
  • Jérôme Hénin (Wed Dec 11 2013 - 11:31:12 CST)
• AMD64 vmd installation problems
  • John Stone (Wed May 31 2006 - 10:38:54 CDT)
  • simon whitehead (Wed May 31 2006 - 04:41:36 CDT)
• amd64/nvidiaFX1100/linux crash
  • David A. Horita (Tue Oct 05 2004 - 17:19:49 CDT)
  • John Stone (Tue Oct 05 2004 - 16:50:30 CDT)
  • David A. Horita (Tue Oct 05 2004 - 16:00:07 CDT)
• amidated C-terminus and pyroglutamate
  • Han Choe (Sat Jan 31 2004 - 04:01:05 CST)
• Amide peptide capping group lost in VMD
  • Neena Susan Eappen (Sat May 11 2019 - 09:05:49 CDT)
  • Neena Susan Eappen (Wed May 01 2019 - 16:54:29 CDT)
• amino acid mutation plugin
  • geetha9999_at_aol.com (Thu Feb 11 2010 - 13:37:08 CST)
• aminoacid mutation
  • Jim Phillips (Tue Oct 28 2003 - 11:08:05 CST)
  • Justin Gullingsrud (Tue Oct 28 2003 - 10:55:42 CST)
  • Brian Bennion (Tue Oct 28 2003 - 10:22:38 CST)
  • Y U Sasidhar (Mon Oct 27 2003 - 22:25:00 CST)
  • Ioana Cozmuta (Mon Oct 27 2003 - 18:23:58 CST)
• Aminoacid selection
  • Mert Gür (Sun Mar 24 2013 - 17:54:42 CDT)
  • Juan Antonio Raygoza Garay (Sun Mar 24 2013 - 16:51:02 CDT)
• ammonium sulfate ions in system
  • Bennion, Brian (Fri Aug 15 2014 - 15:51:52 CDT)
• Amorphous Structure code or builder
  • Rawan Al Nsour (Thu Feb 28 2013 - 14:47:14 CST)
• Amorphous Structure code or builder for non-programmer
  • Rawan Al Nsour (Mon Mar 18 2013 - 15:20:05 CDT)
• An APBS problem
  • John Stone (Fri Jan 27 2006 - 13:56:03 CST)
  • Zhiyong Zhang (Thu Jan 26 2006 - 20:38:15 CST)
• an arrow for a dipole
  • John Stone (Wed Jan 28 2004 - 18:26:45 CST)
  • Marcelo A. Carignano (Wed Jan 28 2004 - 13:30:41 CST)
• an continuous increased pattern for RMSD curve after long run
  • Vermaas, Joshua (Fri Oct 06 2017 - 10:58:48 CDT)
  • Vermaas, Joshua (Thu Oct 05 2017 - 11:47:11 CDT)
  • Vermaas, Joshua (Tue Oct 03 2017 - 14:49:16 CDT)
  • fatehi_at_eng.uk.ac.ir (Tue Oct 03 2017 - 13:08:44 CDT)
  • John Stone (Tue Oct 03 2017 - 13:20:57 CDT)
• an inconsistance between psf file and coor file after equilibration
  • John Stone (Tue May 24 2005 - 11:12:22 CDT)
  • Baoqiang Cao (Sun May 22 2005 - 22:28:16 CDT)
• an old question
  • John Stone (Wed Apr 11 2012 - 13:57:49 CDT)
  • PAUL NEWMAN (Tue Apr 10 2012 - 16:22:09 CDT)
  • Albert (Tue Apr 10 2012 - 14:23:16 CDT)
  • Albert (Tue Apr 10 2012 - 00:08:23 CDT)
  • John Stone (Tue Apr 10 2012 - 14:11:51 CDT)
  • John Stone (Mon Apr 09 2012 - 23:49:11 CDT)
  • Albert (Mon Apr 09 2012 - 23:36:16 CDT)
  • John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
  • Albert (Sat Apr 07 2012 - 00:28:29 CDT)
• an old...old..old..question
  • Axel Kohlmeyer (Mon Jan 29 2007 - 18:33:14 CST)
  • Tsu-Fan Cheng (Mon Jan 29 2007 - 16:24:16 CST)
• An remark on PoV output
  • dstrahs_at_pace.edu (Mon May 14 2007 - 17:52:17 CDT)
  • John Stone (Mon May 14 2007 - 12:57:26 CDT)
  • Szymon Zietkiewicz (Sat May 12 2007 - 06:45:01 CDT)
• Anaglyph rendering problem
  • Ajasja LjubetiÄ� (Mon Sep 13 2010 - 08:55:39 CDT)
  • John Stone (Mon Sep 13 2010 - 08:43:16 CDT)
  • Ajasja LjubetiÄ� (Mon Sep 13 2010 - 03:50:27 CDT)
• Anaglyph stereo with other colors
  • Luis M. Sánchez (Fri May 04 2012 - 09:45:34 CDT)
  • John Stone (Mon Apr 23 2012 - 15:49:37 CDT)
  • John Stone (Mon Apr 23 2012 - 15:40:19 CDT)
  • Luis M. Sánchez (Sat Apr 21 2012 - 16:56:32 CDT)
  • flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
  • John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
  • Luis M. Sánchez (Fri Apr 20 2012 - 08:09:19 CDT)
• analysing big trajectories
  • Oliver Beckstein (Wed Nov 21 2007 - 19:13:32 CST)
  • Thomas Evangelidis (Tue Nov 20 2007 - 18:09:26 CST)
  • John Stone (Tue Nov 20 2007 - 16:26:34 CST)
  • John Stone (Tue Nov 20 2007 - 14:41:35 CST)
  • Oliver Beckstein (Tue Nov 20 2007 - 14:28:45 CST)
• analysing big trajectories (fwd)
  • Oliver Beckstein (Wed Nov 21 2007 - 19:05:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:39:03 CST)
  • John Stone (Tue Nov 20 2007 - 18:32:23 CST)
  • L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:03:25 CST)
  • John Stone (Tue Nov 20 2007 - 17:30:59 CST)
• Analysis
  • Anthony Cruz (Thu Mar 23 2006 - 14:01:45 CST)
  • John Stone (Thu Mar 23 2006 - 10:12:01 CST)
  • Anthony Cruz (Thu Mar 23 2006 - 10:20:13 CST)
  • Anthony Cruz (Mon Mar 20 2006 - 12:33:53 CST)
  • John Stone (Wed Mar 08 2006 - 10:55:49 CST)
  • Anthony Cruz (Wed Mar 08 2006 - 13:37:21 CST)
• Analysis of DLG filles
  • Jeff Saxon (Sat Nov 07 2020 - 03:55:58 CST)
  • Josh Vermaas (Fri Nov 06 2020 - 20:10:53 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 10:53:32 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 09:52:57 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 07:40:58 CST)
  • Paolo Conflitti (Fri Nov 06 2020 - 07:26:01 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 06:27:51 CST)
  • Paolo Conflitti (Fri Nov 06 2020 - 03:00:43 CST)
  • Jeff Saxon (Thu Nov 05 2020 - 16:44:03 CST)
  • Josh Vermaas (Thu Nov 05 2020 - 14:24:19 CST)
  • John Stone (Thu Nov 05 2020 - 10:49:39 CST)
  • Jeff Saxon (Thu Nov 05 2020 - 10:45:19 CST)
• analysis of energy with water excluded from dcd file
  • John Stone (Sun May 23 2004 - 15:46:26 CDT)
  • li (Mon May 17 2004 - 01:28:40 CDT)
• analysis script causes vmd to crash
  • Axel Kohlmeyer (Thu Feb 02 2006 - 22:03:15 CST)
  • Eliud Oloo (Thu Feb 02 2006 - 19:26:35 CST)
• analysis scripts: VMD text /batch mode
  • Justin Gullingsrud (Tue Aug 10 2004 - 13:31:01 CDT)
  • John Stone (Tue Aug 10 2004 - 13:03:22 CDT)
  • Vani Krishna (Tue Aug 10 2004 - 11:46:12 CDT)
• Analyzing a 10ns simulation on Mac aborts
  • John Stone (Thu Dec 29 2011 - 22:49:32 CST)
  • Peter C. Lai (Wed Dec 07 2011 - 01:47:12 CST)
  • Anthony Rey (Tue Dec 06 2011 - 23:25:17 CST)
• analyzing amino acids forming pore constrictions in a channel protein
  • Bassam Haddad (Tue Jun 02 2020 - 12:33:03 CDT)
  • Bassam Haddad (Tue Jun 02 2020 - 11:44:55 CDT)
  • Yogesh Sharma (Tue Jun 02 2020 - 04:46:41 CDT)
• ANALYZING DESMOND OUTPUT IN VMD
  • Axel Kohlmeyer (Sun Mar 20 2011 - 15:49:12 CDT)
  • shome sankar bhunia (Sun Mar 20 2011 - 03:55:58 CDT)
• analyzing gromacs trajectories with VMD
  • Axel Kohlmeyer (Sat Jun 07 2014 - 05:36:12 CDT)
  • sunyeping (Sat Jun 07 2014 - 04:47:59 CDT)
• analyzing gromacs trajectory (.trr) with VMD
  • Axel Kohlmeyer (Tue Mar 09 2010 - 04:47:13 CST)
  • politr_at_huji.ac.il (Tue Mar 09 2010 - 03:48:24 CST)
• Analyzing pdb files remotely with VMD installed locally
  • Jindal Shah (Wed Sep 07 2005 - 20:09:32 CDT)
  • John Stone (Wed Sep 07 2005 - 16:14:26 CDT)
  • Jindal Shah (Wed Sep 07 2005 - 11:54:00 CDT)
  • Michel Espinoza-Fonseca (Wed Sep 07 2005 - 11:48:02 CDT)
  • John Stone (Wed Sep 07 2005 - 11:33:09 CDT)
  • Jindal Shah (Wed Sep 07 2005 - 11:25:50 CDT)
• Analyzing results of simulation done by gromacs
  • Ashar Malik (Sat Jan 14 2017 - 06:15:12 CST)
  • maria khan (Sat Jan 14 2017 - 04:32:11 CST)
  • John Stone (Fri Jan 13 2017 - 23:28:26 CST)
  • Ashar Malik (Fri Jan 13 2017 - 16:41:27 CST)
  • maria khan (Fri Jan 13 2017 - 15:44:31 CST)
• Andres Morales sent you a little gift
  • Andres Morales (Sun Apr 11 2010 - 20:33:52 CDT)
• Android support
  • John Stone (Sun Mar 06 2011 - 15:44:09 CST)
  • John Stone (Sun Mar 06 2011 - 15:28:46 CST)
  • John Stone (Sun Mar 06 2011 - 13:39:44 CST)
  • Dow Hurst (Sun Mar 06 2011 - 13:55:02 CST)
  • Axel Kohlmeyer (Sun Mar 06 2011 - 12:38:38 CST)
  • Dow Hurst (Sun Mar 06 2011 - 11:24:15 CST)
• Angle between a vector and a plane
  • Diego Gomes (Thu Sep 21 2023 - 12:50:19 CDT)
  • Castro Martinez, Camila (Wed Sep 20 2023 - 08:42:24 CDT)
  • Vermaas, Josh (Wed Sep 20 2023 - 08:06:25 CDT)
  • Vermaas, Josh (Wed Sep 20 2023 - 06:54:23 CDT)
  • Ashar Malik (Wed Sep 20 2023 - 04:13:25 CDT)
  • Castro Martinez, Camila (Wed Sep 20 2023 - 02:53:52 CDT)
• Angle between molecular dipole and nanotube axis.
  • Yogesh Sharma (Mon Nov 29 2021 - 12:51:18 CST)
  • John Stone (Tue Nov 09 2021 - 16:14:49 CST)
  • Yogesh Sharma (Mon Nov 08 2021 - 03:19:45 CST)
• angle between protein domains:
  • PARMINDER MANKOO (Tue Jun 26 2007 - 15:46:02 CDT)
• angle between two domains connected at a hinge
  • sajad falsafi (Fri Jul 15 2011 - 11:51:28 CDT)
  • maria goranovic (Fri Jul 15 2011 - 08:35:52 CDT)
• angle between two vectors
  • Luis Gracia (Wed Jan 12 2005 - 12:31:58 CST)
  • John Stone (Tue Jan 11 2005 - 19:05:43 CST)
  • Ekta Khurana (Tue Jan 11 2005 - 18:56:54 CST)
• angle calculation trajectory
  • sajad falsafi (Wed Oct 19 2011 - 01:11:39 CDT)
  • Axel Kohlmeyer (Tue Oct 18 2011 - 13:22:15 CDT)
  • Peyman Z.Moghadam (Tue Oct 18 2011 - 12:28:16 CDT)
• Angle Cutoff variable for Hydrogen Bonds
  • Josh Vermaas (Thu Aug 18 2022 - 08:29:35 CDT)
  • David Carrasco de Busturia (Thu Aug 18 2022 - 05:41:30 CDT)
• Angle parameters
  • Hideyuki Miyatake (Sat Dec 11 2021 - 22:59:50 CST)
• angles
  • John Stone (Thu Jul 29 2004 - 10:53:38 CDT)
  • pinisetty dinesh (Wed Jul 28 2004 - 21:11:12 CDT)
• Angles and dihedral generation
  • Cesar Luis Avila (Tue Sep 05 2006 - 08:15:18 CDT)
  • Jim Phillips (Mon Sep 04 2006 - 16:44:44 CDT)
  • Cesar Luis Avila (Mon Sep 04 2006 - 10:00:35 CDT)
  • Jim Phillips (Sat Sep 02 2006 - 15:25:12 CDT)
  • Cesar Luis Avila (Fri Sep 01 2006 - 20:02:36 CDT)
• ANGLES and DIHEDRALS ... location in VMD code?
  • Javier Goicochea (Mon Feb 02 2009 - 08:33:15 CST)
  • John Stone (Fri Jan 16 2009 - 09:31:01 CST)
  • Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
• angles and dihedrals in .psf file
  • Axel Kohlmeyer (Thu May 21 2009 - 11:28:15 CDT)
  • KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
• Angles between two groups of atoms
  • Enzo Claudino (Wed Feb 03 2021 - 12:19:00 CST)
• Angles generated by AutoPSF?
  • Smith, Harper E. (Mon May 17 2021 - 14:57:28 CDT)
  • Pawel Kedzierski (Mon May 17 2021 - 14:50:37 CDT)
  • Vermaas, Josh (Mon May 17 2021 - 14:23:20 CDT)
  • Smith, Harper E. (Mon May 17 2021 - 12:15:15 CDT)
• Angles in psf file
  • KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
• Angular energy term
  • Giacomo Fiorin (Thu Mar 05 2020 - 12:23:00 CST)
  • Paula Mihaljevic-Juric (Thu Mar 05 2020 - 08:06:15 CST)
• Animate data
  • Nguyen Hoang Phuong (Fri Apr 26 2002 - 12:31:38 CDT)
• animate delete
  • John Stone (Fri Jul 11 2003 - 10:20:11 CDT)
  • Hannes Loeffler (Fri Jul 11 2003 - 01:37:45 CDT)
• animate error handling
  • John Stone (Fri Dec 09 2005 - 09:50:32 CST)
  • Jérôme Hénin (Fri Dec 09 2005 - 05:04:52 CST)
• Animate Molekul
  • Maxim Belkin (Tue Apr 05 2016 - 10:24:47 CDT)
  • Christian Wohlschlager (Tue Apr 05 2016 - 08:12:17 CDT)
• animate read and write
  • A D (Wed Apr 22 2009 - 15:36:00 CDT)
  • John Stone (Wed Apr 22 2009 - 15:42:24 CDT)
• animate read command
  • Jim Pfaendtner (Tue Feb 05 2008 - 13:55:29 CST)
  • John Stone (Tue Feb 05 2008 - 14:16:00 CST)
• Animate the "beta" field
  • John Stone (Mon Jun 21 2004 - 14:17:38 CDT)
  • emmanuel.levy1_at_free.fr (Sat May 29 2004 - 14:05:16 CDT)
• animate transparency
  • Axel Kohlmeyer (Fri Jan 06 2006 - 07:07:43 CST)
  • Yu Chen (Thu Jan 05 2006 - 15:07:37 CST)
• animate with varying atom numbers
  • Axel Kohlmeyer (Sat Jun 10 2006 - 04:55:47 CDT)
  • Rene (Fri Jun 09 2006 - 12:53:59 CDT)
• animate write of a selection in Linux version of VMD
  • Pawel Weronski (Wed Jan 31 2007 - 16:24:02 CST)
  • John Stone (Wed Jan 31 2007 - 16:10:46 CST)
  • Pawel Weronski (Wed Jan 31 2007 - 15:54:25 CST)
• animated colors, trajectories, etc..
  • John Stone (Tue Feb 19 2002 - 18:41:02 CST)
• animated gif
  • Peter Freddolino (Mon Oct 20 2008 - 07:01:18 CDT)
  • Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
• animated gif option in VMD for Windows.
  • John Stone (Thu Aug 24 2006 - 15:00:01 CDT)
  • Axel Kohlmeyer (Thu Aug 24 2006 - 14:45:53 CDT)
  • Ravinder Abrol (Thu Aug 24 2006 - 14:14:58 CDT)
• animating an iso-surface
  • Axel Kohlmeyer (Wed May 26 2004 - 15:48:49 CDT)
  • Randall Hall (Wed May 26 2004 - 13:18:03 CDT)
• animating drawn objects
  • John Stone (Thu Apr 01 2004 - 13:26:17 CST)
  • Vlad Cojocaru (Thu Apr 01 2004 - 10:20:56 CST)
• Animating Trajectories/NAMD Output files
  • Barry Isralewitz (Wed May 08 2002 - 11:37:05 CDT)
  • Storr, Mark (Wed May 08 2002 - 11:16:23 CDT)
  • Barry Isralewitz (Wed May 08 2002 - 11:01:26 CDT)
  • Barry Isralewitz (Tue May 07 2002 - 22:15:21 CDT)
  • Storr, Mark (Tue May 07 2002 - 13:06:43 CDT)
• Animation
  • John Stone (Wed Apr 10 2002 - 09:18:24 CDT)
  • Paul Hubbard (Tue Apr 09 2002 - 15:09:40 CDT)
  • Justin Gullingsrud (Tue Apr 09 2002 - 14:36:36 CDT)
  • John Stone (Tue Apr 09 2002 - 14:24:36 CDT)
  • Paul Hubbard (Tue Apr 09 2002 - 14:12:49 CDT)
  • Simon Hogg (Wed Aug 30 2000 - 19:13:17 CDT)
  • John Stone (Wed Aug 30 2000 - 13:00:24 CDT)
  • B. Bennion (Wed Aug 30 2000 - 11:47:25 CDT)
  • John Stone (Wed Aug 30 2000 - 11:06:03 CDT)
  • spezia_at_caspur.it (Tue Aug 29 2000 - 09:26:07 CDT)
• animation and reps
  • Aitor Gonzalez (Mon Apr 09 2001 - 08:17:52 CDT)
  • Justin Gullingsrud (Wed Apr 04 2001 - 14:15:19 CDT)
  • John Stone (Sat Mar 31 2001 - 11:02:23 CST)
  • B. Bennion (Sat Mar 31 2001 - 01:40:43 CST)
• animation from files with different numbers of atoms
  • Justin Gullingsrud (Sat Jun 22 2002 - 17:07:56 CDT)
  • Jennifer Young (Sat Jun 22 2002 - 16:21:01 CDT)
• animation of an atom diffusion inside a bulk crystal
  • Axel Kohlmeyer (Fri Feb 01 2008 - 05:01:33 CST)
  • massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
• animation question
  • #WONG CHEE HOW# (Fri Mar 28 2003 - 00:10:24 CST)
  • John Stone (Thu Mar 27 2003 - 22:51:57 CST)
  • Randall Hall (Thu Mar 27 2003 - 12:37:35 CST)
• animation with PDBs
  • John Stone (Thu Nov 07 2002 - 10:33:26 CST)
  • Ross J. Toedte (Thu Nov 07 2002 - 10:10:09 CST)
• animation with variable number/names of atoms
  • Axel Kohlmeyer (Tue May 04 2010 - 07:40:37 CDT)
  • Maxim Paliy. (Mon May 03 2010 - 19:05:44 CDT)
  • Axel Kohlmeyer (Mon May 03 2010 - 16:47:05 CDT)
  • John Stone (Mon May 03 2010 - 14:46:34 CDT)
  • Maxim Paliy. (Mon May 03 2010 - 09:10:58 CDT)
• Animations using VMD:
  • Vikas Varshney (Tue Aug 06 2013 - 06:41:35 CDT)
  • Axel Kohlmeyer (Tue Aug 06 2013 - 06:02:42 CDT)
  • Sumit Kumar (Mon Aug 05 2013 - 19:00:03 CDT)
• animations with molecular surfaces
  • John Stone (Mon Jun 24 2002 - 14:17:12 CDT)
  • Will Sheffler (Sat Jun 22 2002 - 02:32:12 CDT)
• ANN: BioCoRE now includes remote job submission
  • biocore_at_ks.uiuc.edu (Fri Mar 30 2001 - 13:26:32 CST)
• Announce VMD 1.9 released
  • John Stone (Mon Mar 14 2011 - 16:49:37 CDT)
• Announce: CPMD VMD visualization tutorial
  • Axel Kohlmeyer (Thu Dec 18 2003 - 13:25:56 CST)
• Announce: JMV version 0.7 is available!
  • John Stone (Fri Nov 02 2001 - 15:30:28 CST)
  • John Stone (Tue Oct 30 2001 - 16:15:33 CST)
• Announce: MDTools update
  • John Stone (Thu Nov 30 2000 - 14:51:44 CST)
• Announce: New VMD Images and Movies tutorial posted online...
  • John Stone (Wed Jan 31 2007 - 00:23:46 CST)
• Announce: new vmdmovie script available...
  • John Stone (Mon Apr 08 2002 - 22:23:01 CDT)
• Announce: Struc. Bio. Software DB updates
  • John Stone (Thu Dec 06 2001 - 11:21:57 CST)
• Announce: Structural Biology Software Database
  • John Stone (Thu Jan 04 2001 - 14:04:34 CST)
• Announce: Updated VMD 1.8 plugins available
  • John Stone (Fri Feb 14 2003 - 16:47:39 CST)
• Announce: VMD 1.4 beta 1
  • John Stone (Mon Oct 04 1999 - 17:07:49 CDT)
• Announce: VMD 1.4 beta 2
  • John Stone (Tue Nov 09 1999 - 15:19:35 CST)
• Announce: VMD 1.4 beta 3
  • John Stone (Thu Nov 18 1999 - 16:08:16 CST)
• Announce: VMD 1.4 beta 4
  • John Stone (Wed Dec 22 1999 - 16:40:53 CST)
• Announce: VMD 1.6 Released
  • John Stone (Fri Dec 22 2000 - 17:17:04 CST)
• Announce: VMD 1.6.1 Released!
  • John Stone (Tue Apr 24 2001 - 10:03:39 CDT)
• Announce: VMD 1.6.1a2 is available
  • John Stone (Mon Mar 05 2001 - 15:17:19 CST)
• Announce: VMD 1.6.1a3 is available
  • John Stone (Mon Mar 12 2001 - 17:46:34 CST)
• Announce: VMD 1.6a1 is available
  • Kim Branson (Sun Aug 27 2000 - 23:13:24 CDT)
  • John Stone (Thu Aug 24 2000 - 18:43:53 CDT)
• Announce: VMD 1.6a2 is available
  • John Stone (Thu Sep 14 2000 - 02:38:08 CDT)
• Announce: VMD 1.6a3 is available
  • John Stone (Fri Oct 06 2000 - 14:37:27 CDT)
• Announce: VMD 1.6a4 is available
  • John Stone (Tue Nov 21 2000 - 00:19:42 CST)
• Announce: VMD 1.7 Released!!
  • John Stone (Thu Aug 02 2001 - 14:26:09 CDT)
• Announce: VMD 1.7.1 released!
  • John Stone (Sun Dec 23 2001 - 22:53:26 CST)
• Announce: VMD 1.7.1b1 test version is available...
  • John Stone (Sat Dec 22 2001 - 21:56:00 CST)
  • John Stone (Wed Dec 05 2001 - 21:14:37 CST)
• Announce: VMD 1.7.2 (Windows-only GUI update) is available
  • John Stone (Wed Feb 06 2002 - 19:07:55 CST)
• Announce: VMD 1.7b1 is available!
  • John Stone (Tue Jul 10 2001 - 18:15:45 CDT)
• Announce: VMD 1.7b2 is available!
  • John Stone (Wed Jul 25 2001 - 10:12:11 CDT)
• Announce: VMD 1.8 is available!
  • John Stone (Mon Dec 09 2002 - 15:22:28 CST)
• Announce: VMD 1.8.1 released!!
  • John Stone (Sun Jun 15 2003 - 23:37:12 CDT)
  • MengJuei Hsieh (Sun Jun 15 2003 - 22:47:23 CDT)
  • John Stone (Sun Jun 15 2003 - 15:38:19 CDT)
• Announce: VMD 1.8.2 released!!
  • John Stone (Fri Dec 05 2003 - 14:53:13 CST)
• Announce: VMD 1.8.3 released!!
  • John Stone (Wed Feb 16 2005 - 00:09:04 CST)
• Announce: VMD 1.8.4 Released!!
  • John Stone (Mon Apr 17 2006 - 11:37:34 CDT)
• Announce: VMD 1.8.5 Released!
  • John Stone (Fri Aug 25 2006 - 23:51:22 CDT)
• Announce: VMD 1.8.6 Released!
  • John Stone (Sun Apr 08 2007 - 00:51:52 CDT)
• Announce: VMD 1.8.7 released
  • John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
• Announce: VMD 1.9.1 released
  • John Stone (Sat Feb 04 2012 - 14:25:58 CST)
• Announce: VMD at Super Computing 99
  • Kirby Vandivort (Thu Nov 11 1999 - 16:32:51 CST)
• Announce: VMD Users Image Gallery
  • John Stone (Thu Feb 22 2001 - 13:43:31 CST)
• Announce: ZoomSeq -- sequence browser for VMD
  • Barry Isralewitz (Thu Dec 28 2000 - 14:54:20 CST)
• Announcement about Faraday Discussion on Molecular Simulation and Visualization - call for abstracts deadline 22 July 2013
  • Marc Baaden (Tue Jul 02 2013 - 15:00:02 CDT)
• ANNOUNCEMENT: BioCoRe
  • Robert Brunner (Fri Mar 03 2000 - 10:22:28 CST)
• Announcement: call for abstracts (**extended deadline**): SC15 workshop "Producing High-Performance and Sustainable Software for Molecular Simulation"
  • Arno Proeme (Mon Oct 05 2015 - 19:33:18 CDT)
• Announcement: Hands-On Workshop On Computational Biophysics
  • Danielle Chandler (Wed Jan 07 2015 - 12:30:34 CST)
  • Danielle Chandler (Wed Dec 17 2014 - 10:24:49 CST)
  • Danielle Chandler (Tue Oct 07 2014 - 11:30:00 CDT)
  • Danielle Chandler (Wed Aug 27 2014 - 13:04:56 CDT)
  • Danielle Chandler (Tue Aug 12 2014 - 09:30:56 CDT)
• Announcement: QM/MM Workshop
  • Axel Kohlmeyer (Thu Apr 19 2007 - 09:14:50 CDT)
• Announcement: User defined movie animation
  • Emmanuel, Alaina (Fri Nov 28 2014 - 10:58:51 CST)
  • Norman Geist (Fri Nov 28 2014 - 01:04:06 CST)
• Announcement: Workshop on Simulation Based Drug Discovery (San Diego, CA, Sept 21-25, 2015)
  • Lela Vukovic (Fri Jun 12 2015 - 21:06:22 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Berkeley, CA, Aug 3-7, 2015)
  • Lela Vukovic (Wed May 20 2015 - 00:06:46 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Lake Tahoe, CA, Aug 3-7, 2015)
  • Lela Vukovic (Tue Mar 24 2015 - 15:51:28 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Odense, Denmark, Oct 12-16, 2015)
  • Lela Vukovic (Wed May 06 2015 - 01:39:55 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Pittsburgh, PA, June 1-5, 2015)
  • Lela Vukovic (Wed Mar 04 2015 - 13:08:28 CST)
• Announcing MDSalon!
  • Jim Phillips (Tue Nov 21 2000 - 15:15:21 CST)
• annoying bug in 1.9.2
  • Axel Kohlmeyer (Mon Jun 15 2015 - 08:07:38 CDT)
  • Maxim Paliy (Mon Jun 15 2015 - 07:43:35 CDT)
• Another feature request for vmd 1.8
  • John Stone (Wed Oct 30 2002 - 10:41:11 CST)
  • David Chalmers (Mon Oct 28 2002 - 20:02:15 CST)
• another tachyon problem
  • John Stone (Wed Jan 23 2013 - 12:10:08 CST)
  • John Stone (Wed Jan 23 2013 - 11:40:49 CST)
  • Albert (Wed Jan 23 2013 - 11:41:52 CST)
  • Albert (Wed Jan 23 2013 - 11:15:04 CST)
• Another thought related to drawing dipole moment vectors
  • Bogdan Costescu (Sun May 27 2012 - 07:10:12 CDT)
  • Axel Kohlmeyer (Sat May 26 2012 - 16:22:55 CDT)
  • Andrew DeYoung (Sat May 26 2012 - 16:14:52 CDT)
  • Wang Yi (Sat May 26 2012 - 14:27:25 CDT)
  • Andrew DeYoung (Sat May 26 2012 - 12:27:53 CDT)
• another trivial question regarding the key setting.
  • Justin Gullingsrud (Mon Mar 25 2002 - 10:26:37 CST)
  • John Stone (Mon Mar 25 2002 - 09:07:14 CST)
  • Margaret Cheung (Mon Mar 25 2002 - 06:28:09 CST)
• antechamber for Windows
  • John Stone (Fri May 27 2011 - 15:16:20 CDT)
  • Keith Battle (Fri May 20 2011 - 12:48:21 CDT)
• antialiasing
  • Axel Kohlmeyer (Wed Sep 13 2006 - 14:10:30 CDT)
  • John Stone (Wed Sep 13 2006 - 14:07:44 CDT)
  • Wen Li (Wed Sep 13 2006 - 14:00:02 CDT)
  • Axel Kohlmeyer (Wed Sep 13 2006 - 13:56:38 CDT)
  • Wen Li (Wed Sep 13 2006 - 13:36:53 CDT)
• Antialiasing ?
  • Stéphane Teletchéa (Thu Oct 24 2002 - 02:16:35 CDT)
  • John Stone (Wed Oct 23 2002 - 10:07:15 CDT)
  • Marc Baaden (Wed Oct 23 2002 - 08:45:22 CDT)
• antialiasing problem
  • Eamon Caddigan (Thu Nov 20 2003 - 15:15:00 CST)
  • ailong (Thu Nov 20 2003 - 12:54:22 CST)
• Antw: Stereo Mode User Defined
  • Christian Wohlschlager (Wed Nov 05 2014 - 02:08:34 CST)
• any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0
  • John Stone (Wed Feb 11 2004 - 20:02:26 CST)
  • John Stone (Wed Feb 11 2004 - 18:33:51 CST)
  • Dallas Warren (Wed Feb 11 2004 - 17:14:28 CST)
  • chris.harwell_at_pharma.novartis.com (Wed Feb 11 2004 - 16:16:46 CST)
• Any interest in VMD supporting mirror reflections w/ ray tracing?
  • John Stone (Fri Nov 28 2014 - 17:30:44 CST)
  • Maxim Belkin (Thu Nov 27 2014 - 21:27:45 CST)
  • John Stone (Wed Nov 26 2014 - 13:49:51 CST)
• Any Mac (Intel) users still running 10.4.x???
  • John Stone (Mon Apr 06 2009 - 11:34:31 CDT)
  • John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
• Any methods for real stereo viewing with Mac and OsX
  • Peter Engelhardt (Sat Nov 06 2004 - 16:51:32 CST)
  • John Stone (Sat Nov 06 2004 - 12:41:30 CST)
  • Peter Engelhardt (Sat Nov 06 2004 - 13:19:33 CST)
• Any TCL script to identify specific MD water molecules with their respective IDs, forming hbond with certain residues in every frame
  • Alvea Tasneem (Wed Feb 02 2022 - 11:48:23 CST)
• Any tutorial/manual for Dowser for membrane protein modeling
  • JC Gumbart (Wed Aug 19 2020 - 10:04:21 CDT)
  • Giacomo Fiorin (Wed Aug 19 2020 - 07:32:14 CDT)
  • JC Gumbart (Wed Aug 19 2020 - 06:37:40 CDT)
  • Faisal, H M Nasrullah (Tue Aug 18 2020 - 12:14:05 CDT)
• Any way for comparing two structures??
  • Luis Gracia (Tue May 31 2005 - 14:07:45 CDT)
  • Blake Charlebois (Tue May 31 2005 - 10:50:32 CDT)
  • Dmitry Osolodkin (Tue May 31 2005 - 09:11:07 CDT)
  • Dmitry Osolodkin (Tue May 31 2005 - 08:58:29 CDT)
• Any way to output contact map data
  • Luis Gracia (Wed Mar 21 2007 - 11:12:32 CDT)
  • Guo Zhi (Wed Mar 21 2007 - 03:32:37 CDT)
  • John Stone (Wed Mar 21 2007 - 01:42:15 CDT)
  • Guo Zhi (Tue Mar 20 2007 - 09:18:03 CDT)
• any way to rotate and translate with mouse without changing modes?
  • John Stone (Mon Jun 30 2014 - 22:31:31 CDT)
  • John Stone (Wed Jun 25 2014 - 11:33:15 CDT)
  • Carlos Simmerling (Wed Jun 25 2014 - 11:42:32 CDT)
  • Josh Vermaas (Wed Jun 25 2014 - 10:49:48 CDT)
  • Carlos Simmerling (Wed Jun 25 2014 - 09:30:48 CDT)
  • Ajasja LjubetiÄ� (Tue Jun 24 2014 - 15:37:39 CDT)
  • Carlos Simmerling (Tue Jun 24 2014 - 13:17:52 CDT)
• anybody interested in running VMD in parallel (without recompiling)?
  • Axel Kohlmeyer (Wed May 30 2012 - 19:40:45 CDT)
• Anyone Completed ffTK Calc Bonded Tab using ORCA gbw instead of Gaussian chk?
  • Joel Subach (Thu Feb 22 2024 - 03:08:29 CST)
  • Joel Subach (Tue Feb 20 2024 - 05:43:11 CST)
  • Joel Subach (Tue Feb 20 2024 - 02:01:03 CST)
  • PaweÅ‚ KÄ™dzierski (Tue Feb 20 2024 - 01:32:05 CST)
  • Joel Subach (Mon Feb 19 2024 - 14:08:30 CST)
• Anyone have catdcd-4.0 for BlueGene?
  • Axel Kohlmeyer (Mon Jan 08 2007 - 16:36:38 CST)
  • John Stone (Mon Jan 08 2007 - 15:41:10 CST)
  • Joshua D. Moore (Mon Jan 08 2007 - 15:34:09 CST)
• Anyone have cyclic structures I can use for testing?
  • John Stone (Tue Feb 20 2007 - 01:28:29 CST)
• Anyone using ATI X1600?
  • Christoph Weber (Mon Jul 17 2006 - 16:18:00 CDT)
  • John Stone (Mon Jul 17 2006 - 11:17:25 CDT)
  • Christoph Weber (Fri Jul 14 2006 - 18:35:35 CDT)
  • John Stone (Thu Jul 13 2006 - 10:42:38 CDT)
  • Yu Zhou (Thu Jul 13 2006 - 07:39:59 CDT)
• APBS automation with VMD
  • John Stone (Thu Sep 20 2012 - 15:57:24 CDT)
  • Martin, Erik W (Fri Sep 07 2012 - 09:41:54 CDT)
• APBS data visualization
  • Vlad Cojocaru (Tue Jan 25 2005 - 13:08:23 CST)
• APBS dx colors depend on order of molec files loaded???
  • John Stone (Thu Oct 18 2007 - 15:08:21 CDT)
  • Chari, Ravi (Thu Oct 18 2007 - 14:52:48 CDT)
• apbs electrostatics
  • John Stone (Wed Sep 17 2008 - 21:42:28 CDT)
  • James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
• APBS electrostatics: Output file missing or unreadable.
  • Ahmet yýldýrým (Wed Nov 06 2013 - 05:57:40 CST)
• APBS error
  • Vlad Cojocaru (Thu Feb 17 2005 - 08:24:07 CST)
  • Armen Nalian (Wed Feb 16 2005 - 18:58:54 CST)
• APBS error : Cannot read output file
  • Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
  • John Stone (Tue Jun 02 2009 - 09:55:51 CDT)
• APBS for small molecules
  • jcorradi_at_criba.edu.ar (Tue May 15 2012 - 13:31:15 CDT)
  • George Tzotzos (Tue May 15 2012 - 11:01:03 CDT)
  • Axel Kohlmeyer (Tue May 15 2012 - 09:22:02 CDT)
  • jcorradi_at_criba.edu.ar (Tue May 15 2012 - 08:28:28 CDT)
  • Axel Kohlmeyer (Tue May 15 2012 - 00:41:56 CDT)
  • jcorradi_at_criba.edu.ar (Sun May 13 2012 - 22:00:08 CDT)
• APBS installation problem
  • Axel Kohlmeyer (Wed Jun 22 2011 - 13:17:30 CDT)
  • Sangita Kachhap (Wed Jun 22 2011 - 12:44:34 CDT)
  • Sangita Kachhap (Wed Jun 22 2011 - 11:23:19 CDT)
• APBS location in vmdrc ?
  • Sabine Reisser (Mon Sep 24 2012 - 09:14:11 CDT)
  • John Stone (Thu Sep 20 2012 - 14:35:24 CDT)
  • Sabine Reisser (Mon Sep 17 2012 - 10:51:52 CDT)
• APBS Output file missing or unreadable
  • Ahmet yýldýrým (Fri Nov 08 2013 - 14:31:42 CST)
  • John Stone (Fri Nov 08 2013 - 14:47:25 CST)
  • Gmail2 (Thu Nov 07 2013 - 21:31:32 CST)
  • Ahmet yýldýrým (Thu Nov 07 2013 - 07:33:26 CST)
  • Ahmet yýldýrým (Thu Nov 07 2013 - 03:11:40 CST)
  • John Stone (Wed Nov 06 2013 - 10:31:14 CST)
  • Ahmet yýldýrým (Wed Nov 06 2013 - 07:05:09 CST)
• APBS plugin
  • Sladjana Maric (Thu Jun 03 2010 - 11:50:33 CDT)
  • John Stone (Thu Jun 03 2010 - 11:37:06 CDT)
  • Sladjana Maric (Thu May 27 2010 - 18:16:15 CDT)
  • Nathan C. Rockwell (Thu Dec 08 2005 - 15:17:48 CST)
  • John Stone (Thu Dec 08 2005 - 11:16:19 CST)
  • Anthony Cruz (Thu Dec 08 2005 - 14:07:37 CST)
  • John Stone (Thu Dec 08 2005 - 10:14:01 CST)
  • Mamoru Yamanishi (Wed Dec 07 2005 - 21:48:56 CST)
  • John Stone (Wed Dec 07 2005 - 17:08:21 CST)
  • Mamoru Yamanishi (Wed Dec 07 2005 - 14:18:48 CST)
  • Anthony Cruz (Wed Dec 07 2005 - 14:06:06 CST)
  • John Stone (Tue Jan 25 2005 - 11:22:53 CST)
  • Vlad Cojocaru (Tue Jan 25 2005 - 09:36:11 CST)
• APBS plugin - lib error
  • John Stone (Thu May 22 2014 - 19:24:31 CDT)
  • Fateme Sadat Emami (Tue May 06 2014 - 20:59:58 CDT)
• APBS Plugin for VMD
  • Eamon Caddigan (Mon Feb 23 2004 - 14:14:33 CST)
• APBS plugin requires molecule renaming after drag and drop loading of .pqr file
  • John Stone (Fri Jul 27 2012 - 11:34:13 CDT)
  • Christopher Neale (Thu Jul 26 2012 - 21:03:35 CDT)
• APBS plugin, created file pot-PE0.dx
  • John Stone (Fri May 27 2011 - 14:43:04 CDT)
  • Ricardo Oliveira dos Santos Soares (Tue May 24 2011 - 13:39:56 CDT)
  • John Stone (Mon May 23 2011 - 15:12:51 CDT)
  • Ricardo Oliveira dos Santos Soares (Mon May 23 2011 - 14:55:00 CDT)
• APBS tutorial link broken
  • Irene Newhouse (Thu Jan 14 2010 - 17:01:14 CST)
  • John Stone (Thu Jan 14 2010 - 17:11:56 CST)
• apbs with vmd, no output
  • John Stone (Thu Jun 02 2011 - 09:44:03 CDT)
  • John Stone (Tue May 10 2011 - 15:09:39 CDT)
  • Asmaa Elsheshiny (Tue May 10 2011 - 12:14:08 CDT)
• APBS: ELEC values
  • John Stone (Thu Aug 28 2014 - 16:42:54 CDT)
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 16:35:56 CDT)
• APBS: uncharged molecule
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 16:13:29 CDT)
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 15:32:57 CDT)
  • John Stone (Thu Aug 28 2014 - 15:40:44 CDT)
  • John Stone (Thu Aug 28 2014 - 15:31:34 CDT)
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 15:00:58 CDT)
• apocynin/1k4u
  • Ajasja LjubetiÄ� (Tue Dec 07 2010 - 10:31:25 CST)
  • John Stone (Tue Dec 07 2010 - 09:23:57 CST)
  • vani panguluri (Mon Dec 06 2010 - 13:50:06 CST)
• Apologies
  • Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
  • Adrain Koh (Wed Nov 10 2004 - 04:12:55 CST)
• Apologizes for "How to select some sugar atoms"
  • Jean Richelle (Fri Apr 21 2006 - 00:23:40 CDT)
• APPCRASH when loading a big trajectory file (.dcd) into VMD
  • James Kress (Tue Sep 01 2015 - 21:35:54 CDT)
  • Axel Kohlmeyer (Tue Sep 01 2015 - 20:18:06 CDT)
  • Ern Seang Ong (Tue Sep 01 2015 - 17:49:45 CDT)
• append glow lights to a VMD/Tachyon scene
  • Axel Kohlmeyer (Fri Feb 17 2012 - 08:11:53 CST)
  • Filip Persson (Fri Feb 17 2012 - 03:11:53 CST)
• append pdb
  • Axel Kohlmeyer (Sun May 16 2010 - 11:00:52 CDT)
  • politr_at_huji.ac.il (Sun May 16 2010 - 09:48:19 CDT)
• Appending to DCD file with "animate write"
  • Chang, Christopher (Wed Nov 16 2005 - 17:05:41 CST)
  • John Stone (Wed Nov 16 2005 - 15:01:02 CST)
  • Chang, Christopher (Wed Nov 16 2005 - 13:42:36 CST)
  • Chang, Christopher (Wed Nov 16 2005 - 13:11:30 CST)
• Apple hardware configuration
  • John Stone (Thu Mar 03 2005 - 15:46:17 CST)
  • John Stone (Mon Feb 28 2005 - 10:48:25 CST)
  • fabrizio cleri (Sat Feb 26 2005 - 02:32:42 CST)
  • fabrizio cleri (Fri Feb 25 2005 - 05:29:24 CST)
• Apple VMD not showing gro file properly
  • John Stone (Fri Feb 13 2004 - 10:52:02 CST)
  • Justin Gullingsrud (Fri Feb 13 2004 - 09:50:21 CST)
  • Jim Nettles (Thu Feb 12 2004 - 23:25:20 CST)
  • John Stone (Thu Feb 12 2004 - 17:22:02 CST)
  • John Stone (Tue Feb 10 2004 - 09:56:58 CST)
  • barrett (Tue Feb 10 2004 - 07:56:50 CST)
• Application Error message during dihedral optimization using FFTK
  • Him Bandhu Upadhyay (Fri Oct 19 2012 - 08:48:47 CDT)
  • Mayne, Christopher G (Fri Oct 19 2012 - 07:34:49 CDT)
  • Him Bandhu Upadhyay (Thu Oct 18 2012 - 21:53:45 CDT)
• Application Error while use of Auto PSF Builder
  • Axel Kohlmeyer (Sun Feb 20 2011 - 09:42:19 CST)
  • Sebastian Wilhelm (Sun Feb 20 2011 - 07:54:35 CST)
• Apply for ACS Comp travel awards for Spring 2017 meeting in San Francisco
  • John Stone (Wed Sep 28 2016 - 11:16:51 CDT)
• applying 6dof input forces
  • wmsmith (Mon Jul 11 2005 - 12:03:52 CDT)
  • wmsmith (Tue Jul 05 2005 - 17:10:09 CDT)
  • Charles Moad (Tue Jul 05 2005 - 16:13:02 CDT)
• Applying forces in VMD
  • John Stone (Thu Oct 16 2014 - 15:36:15 CDT)
  • George Patargias (Thu Oct 16 2014 - 04:06:22 CDT)
• applying forces on a protein in VMD
  • John Stone (Wed Dec 05 2007 - 00:58:14 CST)
  • Peter Schellenberg (Tue Dec 04 2007 - 02:05:58 CST)
• April promo on w4tches
  • Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
• aquire coordinates from the points of the solvent representation
  • John Stone (Sat Nov 21 2009 - 01:01:15 CST)
  • Axel Kohlmeyer (Fri Nov 20 2009 - 13:23:11 CST)
  • Nuno Sousa Cerqueira (Thu Nov 19 2009 - 13:53:40 CST)
• Arbitrary values of isosurface
  • John Stone (Thu Oct 22 2009 - 17:10:14 CDT)
  • Axel Kohlmeyer (Mon Oct 19 2009 - 08:58:17 CDT)
  • aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
• Archived Spam in the VMD-L Mailing List
  • John Stone (Tue Aug 14 2007 - 10:13:27 CDT)
  • Audrey Salazar (Tue Aug 14 2007 - 10:00:30 CDT)
  • John Stone (Tue Aug 14 2007 - 10:07:37 CDT)
• area of protein cross sections
  • dimka (Mon Aug 15 2005 - 14:29:38 CDT)
• area per lipid
  • Andrés Morales (Thu Oct 20 2011 - 01:12:14 CDT)
  • snoze pa (Thu Feb 24 2011 - 12:35:30 CST)
  • Saladino, Alex (Thu Aug 26 2004 - 11:00:55 CDT)
• Area per lipid for tubular micellae
  • Nuno Sousa Cerqueira (Thu Aug 01 2013 - 18:29:57 CDT)
  • Jeffrey Potoff (Thu Aug 01 2013 - 11:26:58 CDT)
  • Vita Duka (Thu Aug 01 2013 - 08:10:10 CDT)
• ARM
  • John Stone (Sat Dec 15 2018 - 14:46:08 CST)
  • Joey Gehring (Thu Dec 13 2018 - 10:29:58 CST)
• Artifacts in GLSL rendering mode: deformation and noisy shading of atom spheres
  • Zilong HE (Wed Sep 25 2024 - 04:21:31 CDT)
  • Zilong HE (Tue Sep 24 2024 - 02:00:00 CDT)
• Ask the Cluster Expert
  • Nick I (Tue Oct 25 2005 - 11:45:59 CDT)
• Ask VMD scripts
  • Nuno Sousa Cerqueira (Wed May 21 2014 - 03:17:07 CDT)
  • Vy Phan (Tue May 20 2014 - 22:52:08 CDT)
• Asking VMD to show bonds between periodic images
  • reza vatan (Thu Mar 03 2016 - 00:40:07 CST)
• Aspen Center for Physics 2013 Workshop
  • MARK PLUMMER (Tue May 22 2012 - 14:58:42 CDT)
• Assertion failure OS X 10.14
  • Per Larsson (Thu Dec 13 2018 - 03:11:53 CST)
• Assign active site
  • Nada Afiva (Mon Apr 20 2020 - 17:36:38 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 17:16:33 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 16:38:05 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 08:54:41 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 07:55:37 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 08:29:54 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 07:31:45 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 04:35:30 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 03:16:57 CDT)
  • Ashar Malik (Sun Apr 19 2020 - 20:31:17 CDT)
  • Nada Afiva (Sun Apr 19 2020 - 18:54:38 CDT)
  • Ashar Malik (Sun Apr 19 2020 - 18:00:28 CDT)
  • Nada Afiva (Sun Apr 19 2020 - 17:50:51 CDT)
  • Ashar Malik (Sun Apr 19 2020 - 17:20:40 CDT)
  • Nada Afiva (Sun Apr 19 2020 - 16:50:17 CDT)
• assign bond color based on bond type
  • John Stone (Wed Oct 21 2015 - 14:58:10 CDT)
  • Zhang, Tao (Wed Oct 21 2015 - 14:54:11 CDT)
  • John Stone (Wed Oct 21 2015 - 14:49:36 CDT)
  • Zhang, Tao (Wed Oct 21 2015 - 10:53:26 CDT)
• Assign velocities so I can color by velocity
  • Joshua D. Moore (Mon Dec 19 2011 - 20:54:02 CST)
  • Axel Kohlmeyer (Mon Dec 19 2011 - 12:32:34 CST)
  • Axel Kohlmeyer (Mon Dec 19 2011 - 12:05:45 CST)
  • Joshua D. Moore (Mon Dec 19 2011 - 12:26:57 CST)
  • Alexander Balaeff (Mon Dec 19 2011 - 11:37:36 CST)
  • Joshua D. Moore (Mon Dec 19 2011 - 10:48:36 CST)
• Assigning Color Codes for stress/force in .xyz trajectory files
  • Peter Freddolino (Fri Feb 09 2007 - 10:48:49 CST)
  • Peter Freddolino (Fri Feb 09 2007 - 07:57:09 CST)
  • John Stone (Fri Feb 09 2007 - 02:56:59 CST)
  • Adrian Koh (Fri Feb 09 2007 - 00:08:26 CST)
• Assigning colors to atom names
  • Lutz Maibaum (Mon Apr 13 2015 - 19:09:18 CDT)
• Assigning different temperatures in the same simulaiton
  • Jhonatam Cordeiro Rodrigues (Mon Mar 31 2014 - 08:25:06 CDT)
• assigning segment id or a unique identity in lammps data file
  • SHIVAM TIWARI (Thu Jan 04 2024 - 02:26:56 CST)
  • Axel Kohlmeyer (Wed Jan 03 2024 - 12:58:48 CST)
  • SHIVAM TIWARI (Wed Jan 03 2024 - 11:27:38 CST)
• assigning variable names using a for loop
  • Olaf Lenz (Thu Mar 29 2007 - 04:38:08 CDT)
  • namd vmd (Thu Mar 29 2007 - 03:21:45 CDT)
• assigning variables for representations
  • John Stone (Thu Sep 05 2002 - 13:53:27 CDT)
  • Vlad Cojocaru (Wed Sep 04 2002 - 07:10:40 CDT)
• assignment of "measure contacts" output to tcl variables
  • Vlad Cojocaru (Tue Apr 17 2007 - 09:50:49 CDT)
  • Vlad Cojocaru (Tue Apr 17 2007 - 07:25:19 CDT)
• Associating .crd file extension with COR Plugin
  • Axel Kohlmeyer (Wed Sep 28 2011 - 08:51:38 CDT)
  • Jernej Zidar (Tue Sep 27 2011 - 22:34:53 CDT)
  • Vadim Patsalo (Tue Sep 27 2011 - 21:08:31 CDT)
• Associating .crd file extension with COR Plugin.
  • Vadim Patsalo (Tue Sep 27 2011 - 16:58:50 CDT)
• Asymmetric concentration gradient
  • Georcki Ropon (Tue Aug 24 2021 - 13:05:05 CDT)
  • Alec Zander (Tue Aug 24 2021 - 13:01:21 CDT)
  • Jason Smith (Tue Aug 24 2021 - 12:11:09 CDT)
  • Ropon-Palacios G. (Mon Aug 23 2021 - 21:08:19 CDT)
• Asymmetric water molecule
  • Jérôme Hénin (Wed Nov 03 2010 - 05:03:40 CDT)
  • Stefan Franzen (Wed Nov 03 2010 - 02:11:22 CDT)
• athlon64 version of vmd
  • John Stone (Fri Mar 05 2004 - 17:39:47 CST)
  • Brian Bennion (Fri Mar 05 2004 - 16:30:57 CST)
  • Jerry Ebalunode (Fri Mar 05 2004 - 13:08:52 CST)
• ATI 3.7.6 driver bugs (and VMD..)
  • John Stone (Wed May 05 2004 - 16:46:01 CDT)
• ATI crashes, use of setenv VMD_EXCL_GL_EXTENSIONS
  • Dr. Peter Schellenberg (Mon Jun 06 2005 - 02:28:21 CDT)
• ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520???
  • John Stone (Wed Aug 25 2004 - 09:23:09 CDT)
  • Dr. Daniel James White PhD (Wed Aug 25 2004 - 03:44:24 CDT)
• ati interlace mode
  • Osmany guirola Cruz (Sat May 20 2006 - 14:52:25 CDT)
  • John Stone (Fri May 19 2006 - 11:45:48 CDT)
  • Sabuj Pattanayek (Thu May 18 2006 - 20:54:06 CDT)
  • John Stone (Thu May 18 2006 - 18:32:03 CDT)
  • Sabuj Pattanayek (Wed May 17 2006 - 16:44:11 CDT)
  • Osmany guirola Cruz (Wed May 17 2006 - 13:45:54 CDT)
  • John Stone (Wed May 17 2006 - 13:07:24 CDT)
  • Osmany guirola Cruz (Tue May 16 2006 - 14:13:55 CDT)
  • John Stone (Tue May 16 2006 - 10:47:03 CDT)
  • Osmany guirola Cruz (Tue May 16 2006 - 07:33:00 CDT)
  • Sabuj Pattanayek (Mon May 15 2006 - 17:00:20 CDT)
  • Osmany guirola Cruz (Mon May 15 2006 - 10:03:44 CDT)
  • John Stone (Mon May 15 2006 - 12:01:50 CDT)
  • Osmany guirola Cruz (Fri May 12 2006 - 12:12:42 CDT)
• ATI radeon 8500 and Linux quad buffered stereo
  • Dr. Daniel James White PhD (Tue Sep 02 2003 - 03:09:28 CDT)
• ati radeon 9200
  • Osmany Guirola Cruz (Thu Dec 22 2005 - 14:58:33 CST)
  • John Stone (Thu Dec 22 2005 - 10:18:17 CST)
  • Osmany Guirola Cruz (Thu Dec 22 2005 - 10:00:07 CST)
• ATI radeon x300
  • John Stone (Fri Apr 01 2005 - 14:06:16 CST)
  • jerry xu (Fri Apr 01 2005 - 12:42:59 CST)
• atom coloring
  • Laurence F. Wood (Tue Mar 12 2002 - 16:39:37 CST)
  • Paul Grayson (Tue Mar 12 2002 - 14:33:29 CST)
  • Dominik Horinek (Mon Mar 11 2002 - 17:59:30 CST)
• Atom distances from trajotory
  • bo baker (Sat Feb 14 2009 - 17:16:27 CST)
  • Peter Freddolino (Sat Feb 14 2009 - 08:01:53 CST)
  • Peter Freddolino (Fri Feb 13 2009 - 09:33:01 CST)
  • bo baker (Thu Feb 12 2009 - 23:50:21 CST)
  • Peter Freddolino (Thu Feb 12 2009 - 07:40:14 CST)
  • bo baker (Thu Feb 12 2009 - 03:27:20 CST)
• atom fitting in non-PDB order
  • James Melville (Mon Feb 07 2005 - 21:27:47 CST)
• Atom ID Change
  • Axel Kohlmeyer (Mon Apr 11 2016 - 13:12:20 CDT)
  • ahmed sengab (Mon Apr 11 2016 - 12:45:41 CDT)
• Atom ID/Color change with timesteps
  • Axel Kohlmeyer (Thu May 12 2011 - 16:21:21 CDT)
  • Adkins, Laura R (Thu May 12 2011 - 16:04:26 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 13:54:23 CDT)
  • Axel Kohlmeyer (Wed May 11 2011 - 19:58:38 CDT)
  • Adkins, Laura R (Wed May 11 2011 - 19:17:05 CDT)
• atom index number
  • Axel Kohlmeyer (Thu Sep 27 2007 - 02:42:42 CDT)
  • Naser, Md Abu (Thu Sep 27 2007 - 01:28:29 CDT)
• atom index starting at 0
  • John Stone (Thu Aug 11 2005 - 16:19:57 CDT)
  • John Stone (Mon Jan 10 2005 - 18:38:51 CST)
  • Andrew Dalke (Fri Jan 07 2005 - 17:36:50 CST)
  • John Stone (Fri Jan 07 2005 - 16:10:41 CST)
  • pl (Fri Jan 07 2005 - 09:47:00 CST)
• atom indices from x y z coordinates
  • Axel Kohlmeyer (Wed Jul 03 2013 - 03:56:14 CDT)
  • Gurunath Katagi (Wed Jul 03 2013 - 03:00:15 CDT)
• Atom label offset
  • Dimitrova, Maria (Mon Dec 19 2016 - 03:12:14 CST)
• ATOM LPH
  • Aleksei (Tue Apr 14 2020 - 15:19:45 CDT)
  • Francesco Pietra (Tue Apr 14 2020 - 12:57:04 CDT)
• Atom movement within a range of Z value
  • muniyamuthu.raviprasad_at_ndsu.edu (Tue May 11 2010 - 14:47:15 CDT)
• atom name can not exceed four characters in pdb and psf?
  • Axel Kohlmeyer (Mon Jun 29 2009 - 22:32:22 CDT)
  • accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
• Atom name label
  • John Stone (Wed Mar 08 2006 - 09:42:02 CST)
  • FyD (Wed Mar 08 2006 - 04:26:17 CST)
• Atom names aliased after psfgen
  • Stefan Doerr (Thu Jul 07 2016 - 05:22:17 CDT)
  • Stefan Doerr (Thu Jul 07 2016 - 05:19:47 CDT)
  • Kevin C Chan (Thu Jul 07 2016 - 04:51:42 CDT)
• Atom names, RES-IDS...!!!
  • JC Gumbart (Mon Jun 04 2007 - 18:18:45 CDT)
  • Raul Araya (Fri Jun 01 2007 - 23:55:33 CDT)
• ATOM or HETATM record
  • Joseph E. Curtis (Fri Jan 07 2005 - 16:46:16 CST)
• Atom order in VMD
  • Maxim Belkin (Sat Mar 14 2015 - 19:21:08 CDT)
  • Arjun Sharma (Sat Mar 14 2015 - 17:50:42 CDT)
• atom position update for reference atom list
  • John Stone (Mon Jun 18 2007 - 16:43:13 CDT)
  • Philipp Schoen1 (Wed Jun 13 2007 - 08:28:30 CDT)
• Atom renumbering in DCD file
  • Chang, Christopher (Tue Aug 09 2005 - 14:15:03 CDT)
  • Justin Gullingsrud (Tue Aug 09 2005 - 13:30:08 CDT)
  • John Stone (Mon Aug 08 2005 - 19:08:03 CDT)
  • Chang, Christopher (Mon Aug 08 2005 - 18:48:33 CDT)
• atom selection
  • Axel Kohlmeyer (Mon Sep 21 2009 - 14:22:08 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 14:02:49 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 13:57:29 CDT)
  • Eric H. Lee (Sun Jun 07 2009 - 23:46:39 CDT)
  • Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
  • Joaquim Rui Rodrigues (Wed Dec 03 2008 - 11:44:55 CST)
  • Leonardo Trabuco (Wed Dec 03 2008 - 11:10:53 CST)
  • aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
• Atom Selection & List Generation
  • Josh Vermaas (Thu Jun 20 2013 - 16:13:25 CDT)
  • Alex Richards (Wed Jun 19 2013 - 16:49:40 CDT)
  • Josh Vermaas (Wed Jun 19 2013 - 15:29:41 CDT)
  • Alex Richards (Tue Jun 18 2013 - 15:31:54 CDT)
  • Josh Vermaas (Mon Jun 17 2013 - 18:37:43 CDT)
  • Alex Richards (Mon Jun 17 2013 - 16:32:12 CDT)
• Atom Selection based on angular criterion
  • Ashar Malik (Thu Sep 01 2016 - 07:02:34 CDT)
  • Sangkha Borah (Thu Sep 01 2016 - 03:10:37 CDT)
• Atom selection based on arbitrary columns in the pdb file
  • Peter Freddolino (Sat Aug 05 2006 - 15:17:21 CDT)
  • Axel Kohlmeyer (Sat Aug 05 2006 - 12:05:51 CDT)
  • Shatadal Ghosh (Sat Aug 05 2006 - 11:04:57 CDT)
• Atom selection based on center of sphere
  • Peter (Wed Mar 27 2024 - 16:14:08 CDT)
  • Joaquim Rui de Castro Rodrigues (Wed Mar 27 2024 - 06:23:54 CDT)
  • Peter (Wed Mar 27 2024 - 01:29:46 CDT)
  • Peter (Tue Mar 26 2024 - 17:04:45 CDT)
• Atom Selection for RDF
  • Axel Kohlmeyer (Sat May 22 2010 - 12:46:48 CDT)
  • Amir Hajiahmadi Farmahini (Sat May 22 2010 - 12:15:36 CDT)
  • Amir Hajiahmadi Farmahini (Sat May 22 2010 - 09:19:18 CDT)
  • Axel Kohlmeyer (Sat May 22 2010 - 10:25:06 CDT)
• atom selection from multiple molecules
  • Axel Kohlmeyer (Mon Sep 02 2013 - 11:13:31 CDT)
  • Oliver Schillinger (Mon Sep 02 2013 - 10:17:06 CDT)
• atom selection in cv module of VMD
  • Jérôme Hénin (Tue Jan 17 2017 - 07:17:02 CST)
  • Bin Sun (Sun Jan 15 2017 - 18:36:22 CST)
• atom selection in vmd
  • Alex Liu (Mon Nov 22 2010 - 16:16:45 CST)
  • Ignacio Fernández Galván (Wed Nov 17 2010 - 12:30:59 CST)
  • Ajasja LjubetiÄ� (Wed Nov 17 2010 - 10:25:55 CST)
  • Axel Kohlmeyer (Wed Nov 17 2010 - 09:56:35 CST)
  • Alex Liu (Wed Nov 17 2010 - 08:49:55 CST)
• Atom Selection Rectangle
  • Josh Vermaas (Wed Sep 24 2014 - 15:50:37 CDT)
  • Parker de Waal (Wed Sep 24 2014 - 14:45:42 CDT)
  • Parker de Waal (Wed Sep 24 2014 - 13:49:27 CDT)
  • John Stone (Wed Sep 24 2014 - 13:56:29 CDT)
  • John Stone (Tue Sep 23 2014 - 22:02:31 CDT)
  • Parker de Waal (Tue Sep 23 2014 - 21:49:32 CDT)
  • John Stone (Tue Sep 23 2014 - 21:00:29 CDT)
  • Parker de Waal (Tue Sep 23 2014 - 20:27:08 CDT)
• Atom selection to identify residues that clash
  • Jacob Durrant (Tue Feb 25 2014 - 23:49:38 CST)
  • Josh Vermaas (Tue Feb 25 2014 - 21:44:09 CST)
  • Josh Vermaas (Sat Feb 22 2014 - 17:49:43 CST)
  • Mike Makowski (Sat Feb 22 2014 - 00:05:19 CST)
  • Jacob Durrant (Fri Feb 21 2014 - 21:56:32 CST)
• Atom selection with asterisk atom name
  • Vermaas, Josh (Fri May 28 2021 - 14:03:41 CDT)
  • Nathan Kern (Fri May 28 2021 - 11:49:41 CDT)
  • Nathan Kern (Fri May 28 2021 - 11:48:44 CDT)
  • Vermaas, Josh (Fri May 28 2021 - 10:49:25 CDT)
  • Vermaas, Josh (Wed May 26 2021 - 10:57:06 CDT)
  • Saikat Pal (Wed May 26 2021 - 02:00:59 CDT)
• Atom selections for measure - index sorting
  • Axel Kohlmeyer (Thu Dec 15 2016 - 10:24:15 CST)
  • Brian Radak (Thu Dec 15 2016 - 09:33:06 CST)
  • Ajasja LjubetiÄ� (Thu Dec 15 2016 - 02:31:16 CST)
  • Brian Radak (Wed Dec 14 2016 - 15:49:03 CST)
• Atom Selections in QwikMD
  • João Ribeiro (Thu Jun 21 2018 - 10:03:44 CDT)
  • João Ribeiro (Wed Jun 20 2018 - 17:06:36 CDT)
  • SM Bargeen A Turzo (Wed Jun 20 2018 - 14:28:03 CDT)
• atom serial number
  • Peter Freddolino (Sun Jul 01 2007 - 13:40:52 CDT)
  • Francesco Pietra (Sun Jul 01 2007 - 02:33:20 CDT)
• Atom serial numbers in array format
  • Axel Kohlmeyer (Thu Feb 21 2013 - 06:38:45 CST)
  • Marzieh Alishahi (Thu Feb 21 2013 - 05:30:58 CST)
  • Axel Kohlmeyer (Thu Feb 21 2013 - 04:43:08 CST)
  • Marzieh Alishahi (Thu Feb 21 2013 - 03:26:33 CST)
• Atom sorting according to resid
  • andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
  • Axel Kohlmeyer (Wed Oct 21 2009 - 11:21:58 CDT)
• atom type
  • bo liu (Fri Oct 03 2008 - 06:51:22 CDT)
  • Rudra Banerjee (Thu Oct 02 2008 - 22:57:47 CDT)
  • Axel Kohlmeyer (Thu Oct 02 2008 - 13:16:47 CDT)
  • Rudra Banerjee (Thu Oct 02 2008 - 12:14:25 CDT)
  • Boris Steipe (Wed Oct 01 2008 - 11:37:48 CDT)
  • Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
• Atom type information is not incremented after merging two molecules.
  • Manoj Dhiman (Fri Feb 23 2018 - 09:22:18 CST)
  • Axel Kohlmeyer (Fri Feb 23 2018 - 04:02:27 CST)
  • Manoj Dhiman (Fri Feb 23 2018 - 03:34:16 CST)
• atom types depend on PSF/PDB reading order
  • Vermaas, Joshua (Thu Dec 20 2018 - 08:42:52 CST)
  • Gumbart, JC (Wed Dec 19 2018 - 18:46:23 CST)
• Atom typing
  • Justin Gullingsrud (Tue Mar 30 2004 - 14:59:54 CST)
  • Kooser, Ara S (Tue Mar 30 2004 - 12:24:30 CST)
• atom velocity arrows
  • John Stone (Wed Mar 12 2003 - 15:24:31 CST)
  • John Stone (Wed Mar 12 2003 - 13:45:21 CST)
• ATOM VELOCITY HIGH ERROR in Coarse grained Simulation
  • Rabeta Yeasmin (Fri Mar 30 2018 - 10:19:32 CDT)
  • Axel Kohlmeyer (Fri Mar 30 2018 - 09:41:50 CDT)
  • RAKESH (Fri Mar 30 2018 - 08:39:40 CDT)
• Atomic bond counting wuth VMD
  • Josh Vermaas (Fri Jun 19 2020 - 15:47:22 CDT)
  • Josh Vermaas (Fri Jun 19 2020 - 08:55:59 CDT)
  • Otakandza Glenn (Fri Jun 19 2020 - 06:11:03 CDT)
• Atomic trajectory to COM trajectory,
  • Maxim Belkin (Wed Feb 05 2014 - 14:30:37 CST)
  • Ali Alizadeh (Wed Feb 05 2014 - 14:20:17 CST)
  • Maxim Belkin (Wed Feb 05 2014 - 10:53:15 CST)
  • Ali Alizadeh (Wed Feb 05 2014 - 05:31:39 CST)
  • Maxim Belkin (Tue Feb 04 2014 - 16:00:03 CST)
  • Ali Alizadeh (Tue Feb 04 2014 - 15:21:03 CST)
  • Axel Kohlmeyer (Wed Dec 11 2013 - 23:53:59 CST)
  • Ali Alizadeh (Wed Dec 11 2013 - 17:29:26 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 13:13:49 CST)
  • Axel Kohlmeyer (Mon Dec 09 2013 - 13:09:22 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 12:43:57 CST)
  • Axel Kohlmeyer (Mon Dec 09 2013 - 10:21:08 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 10:26:49 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 09:55:58 CST)
  • Axel Kohlmeyer (Mon Dec 09 2013 - 08:32:15 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 07:09:30 CST)
• AtomLexer/lex.yy.c error
  • John Stone (Fri Sep 26 2003 - 13:59:38 CDT)
  • John Stone (Thu Sep 25 2003 - 16:35:22 CDT)
  • Jeroen Akershoek (Wed Sep 17 2003 - 01:44:46 CDT)
  • John Stone (Tue Sep 16 2003 - 12:06:33 CDT)
  • Brian Bennion (Tue Sep 16 2003 - 10:37:28 CDT)
  • Jeroen Akershoek (Tue Sep 16 2003 - 10:28:20 CDT)
  • Brian Bennion (Tue Sep 16 2003 - 10:06:33 CDT)
  • Jeroen Akershoek (Tue Sep 16 2003 - 05:38:11 CDT)
• atoms deleted in patch try to come back
  • Irene Newhouse (Sun Jul 15 2007 - 18:42:26 CDT)
  • Irene Newhouse (Sun Jul 15 2007 - 18:37:46 CDT)
  • Peter Freddolino (Sun Jul 15 2007 - 17:36:04 CDT)
  • JC Gumbart (Sun Jul 15 2007 - 02:02:18 CDT)
  • Irene Newhouse (Sun Jul 15 2007 - 01:01:48 CDT)
• Atoms dropped on running AutoPSF
  • Ashar Malik (Fri Mar 24 2023 - 19:38:09 CDT)
  • Priyanshu Gupta (Fri Mar 24 2023 - 12:52:46 CDT)
• atoms filter?
  • John Stone (Thu May 16 2002 - 10:09:07 CDT)
  • Wuwei Liang (Thu May 16 2002 - 13:03:35 CDT)
• Atoms in rings
  • John Stone (Fri Oct 27 2017 - 14:30:14 CDT)
  • John Stone (Fri Oct 27 2017 - 12:54:31 CDT)
  • Vermaas, Joshua (Fri Oct 27 2017 - 11:44:43 CDT)
  • MD Simulation (Fri Oct 27 2017 - 09:31:41 CDT)
• atoms inside a Nanotube, Deleting
  • Nima Soltani (Sun Jun 07 2020 - 22:49:58 CDT)
• Atoms moving too fast
  • João Ribeiro (Thu May 25 2017 - 08:37:59 CDT)
  • Ashar Malik (Wed May 24 2017 - 20:49:05 CDT)
  • Pratik Narain Srivastava (Wed May 24 2017 - 14:36:45 CDT)
• Atoms numbers in VMD
  • Leandro Martínez (Thu Sep 25 2008 - 14:56:01 CDT)
  • Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
• Atoms on top of each in wrapped trajectory
  • Alex Hummels (Thu Aug 15 2019 - 16:18:57 CDT)
  • Jérôme Hénin (Thu Aug 15 2019 - 16:06:53 CDT)
  • Vermaas, Joshua (Thu Aug 15 2019 - 15:56:09 CDT)
  • Alex Hummels (Thu Aug 15 2019 - 14:42:02 CDT)
• Atoms poorly guessed after applying a patch in Psfgen
  • Josh Vermaas (Fri Mar 29 2024 - 11:58:43 CDT)
  • Josh Vermaas (Fri Mar 29 2024 - 09:47:58 CDT)
  • Kyle Billings (Thu Mar 28 2024 - 15:15:23 CDT)
  • Vermaas, Josh (Wed Mar 27 2024 - 09:51:49 CDT)
  • Josh Vermaas (Mon Mar 25 2024 - 15:01:52 CDT)
  • Kyle Billings (Mon Mar 25 2024 - 12:28:59 CDT)
• atoms selection
  • Jérôme Hénin (Mon Feb 21 2011 - 08:18:04 CST)
  • Axel Kohlmeyer (Sun Feb 20 2011 - 12:18:56 CST)
  • Iman Salehinia (Sat Feb 19 2011 - 16:33:27 CST)
• atoms selection/special characters
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:06:47 CST)
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:06:18 CST)
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:03:29 CST)
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:04:07 CST)
  • Fatemesadat Emami (Fri Dec 20 2013 - 20:52:32 CST)
  • Axel Kohlmeyer (Fri Nov 29 2013 - 20:43:33 CST)
  • Axel Kohlmeyer (Fri Nov 29 2013 - 19:17:08 CST)
  • Fatemesadat Emami (Fri Nov 29 2013 - 18:13:17 CST)
• atoms with changing colors
  • Simone Melchionna (Thu Mar 20 2008 - 16:50:50 CDT)
  • John Stone (Thu Mar 20 2008 - 17:03:47 CDT)
  • Axel Kohlmeyer (Thu Mar 20 2008 - 17:05:53 CDT)
• atoms within a radius cutoff and a percentage cutoff of a trajectory
  • Aravinda Munasinghe (Sun Jun 23 2019 - 11:48:15 CDT)
  • Amendra Fernando Hewa Dewage (Fri Jun 21 2019 - 15:27:01 CDT)
• atomsel : setbonds: Need one bondlist for each selected atom
  • leila karami (Wed Feb 01 2017 - 01:44:26 CST)
• AtomSel and Graphics
  • Justin Gullingsrud (Sat Feb 23 2002 - 16:53:21 CST)
  • John Stone (Fri Feb 22 2002 - 16:07:07 CST)
  • Fei Xu (Fri Feb 22 2002 - 11:26:51 CST)
• AtomSel with object index (Python scripting)
  • John Stone (Fri Feb 10 2006 - 13:26:44 CST)
  • ziemys_at_ecr6.ohio-state.edu (Fri Feb 10 2006 - 13:04:07 CST)
• atomsel: writepdb failed for vmd 1.8.6
  • John Stone (Tue Jun 19 2007 - 17:21:01 CDT)
  • Margaret S. Cheung (Tue Jun 19 2007 - 16:16:24 CDT)
• atomselect
  • Axel Kohlmeyer (Thu Apr 17 2008 - 11:07:27 CDT)
  • Jian Zou (Thu Apr 17 2008 - 09:06:48 CDT)
  • cong chen (Wed Apr 16 2008 - 19:58:18 CDT)
  • Axel Kohlmeyer (Tue Jul 10 2007 - 08:49:38 CDT)
  • Eduard Schreiner (Tue Jul 10 2007 - 09:23:23 CDT)
  • Olaf Lenz (Tue Jul 10 2007 - 06:41:49 CDT)
  • sally cii (Tue Jul 10 2007 - 06:05:51 CDT)
  • Olaf Lenz (Tue Jul 10 2007 - 05:43:26 CDT)
  • sally cii (Tue Jul 10 2007 - 05:41:42 CDT)
  • Olaf Lenz (Tue Jul 10 2007 - 03:52:46 CDT)
  • sally cii (Tue Jul 10 2007 - 03:03:23 CDT)
  • Justin Gullingsrud (Tue Mar 18 2003 - 16:52:12 CST)
  • Justin Gullingsrud (Tue Mar 18 2003 - 16:19:36 CST)
  • B. Bennion (Tue Mar 18 2003 - 16:03:05 CST)
• atomselect across two different molids
  • Ravinder Abrol (Thu Mar 27 2014 - 15:15:42 CDT)
• atomselect and macro
  • Molybdos Kirkimpolakis (Mon Oct 17 2011 - 00:11:05 CDT)
  • Axel Kohlmeyer (Sat Oct 15 2011 - 17:33:49 CDT)
  • Molybdos Kirkimpolakis (Sat Oct 15 2011 - 15:34:59 CDT)
• atomselect counting
  • Bryan Roessler (Thu Feb 02 2012 - 13:20:38 CST)
  • Peter C. Lai (Wed Jan 25 2012 - 16:51:49 CST)
  • Axel Kohlmeyer (Wed Jan 25 2012 - 14:46:05 CST)
  • jeela keel (Wed Jan 25 2012 - 13:48:18 CST)
  • jeela keel (Wed Jan 25 2012 - 08:39:47 CST)
  • Axel Kohlmeyer (Wed Jan 25 2012 - 09:12:16 CST)
• Atomselect entire water molecule using pbwithin
  • Josh Vermaas (Fri Nov 11 2022 - 16:46:51 CST)
  • Huang, Caleb (Fri Nov 11 2022 - 14:51:53 CST)
• atomselect for interacting hydroxyl groups
  • Ashar Malik (Tue Aug 16 2022 - 12:53:49 CDT)
  • Vermaas, Josh (Tue Aug 16 2022 - 12:53:40 CDT)
  • Huang, Caleb (Tue Aug 16 2022 - 11:36:40 CDT)
• Atomselect in loops
  • Lubos Vrbka (Fri Nov 24 2006 - 07:46:14 CST)
  • Alexandre A. Vakhrouchev (Fri Nov 24 2006 - 03:50:34 CST)
• Atomselect in NAMD GUI
  • Peter Freddolino (Thu Feb 12 2009 - 06:21:11 CST)
  • bo baker (Wed Feb 11 2009 - 16:01:37 CST)
  • John Stone (Mon Feb 09 2009 - 00:06:46 CST)
  • bo baker (Sun Feb 08 2009 - 16:17:15 CST)
  • bo baker (Thu Feb 05 2009 - 05:02:45 CST)
• atomselect moveby: non-numeric in vector
  • Adupa Vasista (Tue Feb 18 2020 - 11:43:16 CST)
  • Jérôme Hénin (Tue Feb 18 2020 - 11:34:37 CST)
  • Goedde, Chris (Tue Feb 18 2020 - 11:28:35 CST)
  • Adupa Vasista (Tue Feb 18 2020 - 11:29:49 CST)
  • Adupa Vasista (Tue Feb 18 2020 - 10:59:21 CST)
  • Joaquim Rui de Castro Rodrigues (Tue Feb 18 2020 - 10:46:13 CST)
  • Adupa Vasista (Tue Feb 18 2020 - 09:32:22 CST)
• Atomselect on several molecules
  • Veronika Brazdova (Mon Feb 05 2007 - 10:11:23 CST)
  • Axel Kohlmeyer (Fri Feb 02 2007 - 13:36:13 CST)
  • Veronika Brazdova (Fri Feb 02 2007 - 12:57:25 CST)
  • Axel Kohlmeyer (Fri Feb 02 2007 - 11:19:06 CST)
  • Veronika Brazdova (Fri Feb 02 2007 - 10:04:22 CST)
• atomselect one liner
  • Axel Kohlmeyer (Sat Jul 20 2019 - 03:22:13 CDT)
  • Philippe Bopp (Sat Jul 20 2019 - 02:22:12 CDT)
• atomselect protein
  • Adrian Kaats (Thu Mar 20 2008 - 16:39:54 CDT)
  • John Stone (Thu Mar 20 2008 - 16:48:27 CDT)
• atomselect within
  • Wagener, M. (Markus) (Fri Feb 27 2004 - 04:39:48 CST)
  • John Stone (Wed Feb 25 2004 - 13:28:37 CST)
  • Wagener, M. (Markus) (Wed Feb 25 2004 - 08:23:37 CST)
• atomselect within a loop
  • Josh Vermaas (Mon Mar 18 2013 - 13:29:23 CDT)
  • Yohann Morille (Mon Mar 18 2013 - 06:17:15 CDT)
• atomselect: cannot parse selection text:
  • Viviane Corrêa (Fri Feb 07 2020 - 07:31:56 CST)
  • Giacomo Fiorin (Fri Feb 07 2020 - 06:17:21 CST)
  • Gianfranco Abrusci (Fri Feb 07 2020 - 05:40:54 CST)
  • Viviane Corrêa (Fri Feb 07 2020 - 03:37:47 CST)
  • John Stone (Thu Feb 06 2020 - 11:40:21 CST)
  • Viviane Corrêa (Thu Feb 06 2020 - 11:31:06 CST)
  • John Stone (Thu Feb 06 2020 - 11:21:21 CST)
  • Viviane Corrêa (Thu Feb 06 2020 - 11:13:25 CST)
• atomselect: cannot parse selection text: index
  • Monika Madhavi (Thu Jan 28 2016 - 23:11:57 CST)
• atomselection
  • Luis Rosales (Wed Jun 20 2007 - 10:14:56 CDT)
  • Kevser Göçmen Topal (Wed Jun 20 2007 - 02:27:50 CDT)
• atomselection by wildcard and distance exclusion
  • Bennion, Brian (Tue Jan 13 2015 - 12:23:11 CST)
  • Richard Wood (Tue Jan 13 2015 - 11:05:22 CST)
  • Axel Kohlmeyer (Tue Jan 13 2015 - 10:54:08 CST)
  • Bennion, Brian (Tue Jan 13 2015 - 10:04:52 CST)
  • John Stone (Tue Jan 13 2015 - 10:18:15 CST)
  • Norman Geist (Tue Jan 13 2015 - 01:27:02 CST)
  • John Stone (Mon Jan 12 2015 - 23:42:15 CST)
  • Bennion, Brian (Mon Jan 12 2015 - 23:12:58 CST)
  • John Stone (Mon Jan 12 2015 - 23:25:20 CST)
  • Bennion, Brian (Mon Jan 12 2015 - 18:57:52 CST)
• Atomselection for negative values
  • Chang, Christopher (Wed Jul 19 2006 - 17:46:15 CDT)
  • John Stone (Wed Jul 19 2006 - 17:03:14 CDT)
  • Chang, Christopher (Wed Jul 19 2006 - 16:18:39 CDT)
• Atomselection in NAMDENERGY
  • Axel Kohlmeyer (Fri Mar 02 2007 - 08:31:54 CST)
  • Jawahar Neelankatan (Fri Mar 02 2007 - 08:09:27 CST)
• atomselection in order
  • Myunggi Yi (Thu Aug 30 2007 - 08:49:25 CDT)
  • John Stone (Wed Aug 29 2007 - 00:11:02 CDT)
  • Myunggi Yi (Tue Aug 28 2007 - 16:35:49 CDT)
  • Leonardo Trabuco (Tue Aug 28 2007 - 10:12:10 CDT)
  • Myunggi Yi (Tue Aug 28 2007 - 09:22:35 CDT)
  • Myunggi Yi (Tue Aug 28 2007 - 08:29:03 CDT)
  • John Stone (Mon Aug 27 2007 - 14:57:12 CDT)
  • Thomas C. Bishop (Mon Aug 27 2007 - 09:34:15 CDT)
  • Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
  • Myunggi Yi (Thu Aug 23 2007 - 22:19:35 CDT)
• atomselection near periodic boundaries
  • Amir (Mon Feb 19 2024 - 12:49:35 CST)
  • Axel Kohlmeyer (Mon Feb 19 2024 - 06:55:01 CST)
  • SHIVAM TIWARI (Mon Feb 19 2024 - 00:41:43 CST)
  • Amir (Sun Feb 18 2024 - 14:54:49 CST)
• Atomselection problem
  • John Stone (Fri Feb 24 2006 - 17:07:48 CST)
  • Manali Joshi (Fri Feb 24 2006 - 16:54:12 CST)
• atomselection question
  • Peter Freddolino (Tue May 22 2007 - 19:29:53 CDT)
  • Brian Kidd (Tue May 22 2007 - 18:55:55 CDT)
• Atomselection with the position selected conditions inside the loop is not working properly
  • fan li (Thu Aug 16 2018 - 12:18:18 CDT)
  • Ashar Malik (Thu Aug 16 2018 - 11:22:21 CDT)
  • fan li (Thu Aug 16 2018 - 10:24:54 CDT)
  • Giacomo Fiorin (Thu Aug 16 2018 - 09:09:27 CDT)
  • Ashar Malik (Thu Aug 16 2018 - 08:43:50 CDT)
  • João Ribeiro (Thu Aug 16 2018 - 08:23:51 CDT)
  • Axel Kohlmeyer (Thu Aug 16 2018 - 08:14:03 CDT)
  • fan li (Thu Aug 16 2018 - 08:05:38 CDT)
  • Ashar Malik (Thu Aug 16 2018 - 06:50:38 CDT)
  • fan li (Thu Aug 16 2018 - 05:47:22 CDT)
• atomselection: number of residues
  • Axel Kohlmeyer (Sun Feb 11 2007 - 13:41:08 CST)
  • JC Gumbart (Sun Feb 11 2007 - 12:16:11 CST)
  • Peter Freddolino (Sun Feb 11 2007 - 12:11:09 CST)
  • Leonardo Trabuco (Sun Feb 11 2007 - 11:59:23 CST)
  • namd vmd (Sun Feb 11 2007 - 06:35:17 CST)
• attaching an arbitrary surface molecule to a nanopore
  • Sean T Kigerl (Tue Jul 24 2012 - 14:25:06 CDT)
• Attaching NBD label to residues mutated to cysteine in VMD
  • Satyaki Chatterjee (Sat Jul 08 2017 - 11:41:45 CDT)
• attachment file size limit for the mailing list
  • John Stone (Fri Mar 26 2021 - 00:12:37 CDT)
  • SHIVAM TIWARI (Thu Mar 25 2021 - 00:19:00 CDT)
• attempting to source a script
  • Tim Isgro (Thu Feb 12 2004 - 13:58:28 CST)
  • Andrew Dalke (Thu Feb 12 2004 - 08:41:46 CST)
  • John Stone (Wed Feb 11 2004 - 18:39:41 CST)
  • Oliver Beckstein (Wed Feb 11 2004 - 18:05:24 CST)
  • Tim Isgro (Wed Feb 11 2004 - 18:50:04 CST)
  • Brian Bennion (Wed Feb 11 2004 - 16:49:41 CST)
  • Kristy L. Mardis (Wed Feb 11 2004 - 15:51:17 CST)
• Attractive or repulsive with Namd Energy?
  • Maxim Belkin (Mon Nov 30 2015 - 10:49:43 CST)
  • Axel Kohlmeyer (Wed Nov 25 2015 - 11:35:39 CST)
  • sunyeping (Tue Nov 24 2015 - 22:55:06 CST)
  • Maxim Belkin (Tue Nov 24 2015 - 09:48:38 CST)
  • Maxim Belkin (Mon Nov 23 2015 - 13:11:33 CST)
  • Jérôme Hénin (Mon Nov 23 2015 - 03:33:30 CST)
  • sunyeping (Sun Nov 22 2015 - 20:15:06 CST)
• Authentication error VMD-xplor
  • Robert Dagil (Fri Mar 18 2011 - 07:46:07 CDT)
• Auto Bead Display Size using topotools
  • Axel Kohlmeyer (Mon Apr 02 2012 - 15:59:06 CDT)
  • Phelan Jr, Frederick R. Dr. (Mon Apr 02 2012 - 14:50:47 CDT)
• Auto IMD
  • Jordi Cohen (Mon Jan 24 2005 - 14:27:49 CST)
  • Luis Rosales (Mon Jan 24 2005 - 14:12:45 CST)
• auto ionise error
  • Ajasja LjubetiÄ� (Tue Jul 09 2013 - 14:25:25 CDT)
  • John Stone (Tue Jul 09 2013 - 13:40:47 CDT)
  • Revthi Sanker (Sat Jun 29 2013 - 07:53:03 CDT)
• auto none /psfgen
  • Jim Phillips (Thu Jun 30 2005 - 10:40:34 CDT)
  • vivek sharma (Wed Jun 29 2005 - 07:31:23 CDT)
• Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7
  • Peter Freddolino (Mon May 10 2021 - 11:03:17 CDT)
  • John Stone (Mon May 10 2021 - 10:49:16 CDT)
  • Peter Freddolino (Mon May 10 2021 - 08:14:12 CDT)
  • John Stone (Mon May 10 2021 - 01:01:05 CDT)
  • Peter Freddolino (Sun May 09 2021 - 19:17:26 CDT)
  • Patrick Osmer (Sun May 09 2021 - 14:29:00 CDT)
• Autobond Criterion
  • Axel Kohlmeyer (Fri Sep 06 2013 - 05:09:23 CDT)
  • Oliver Stenning (Fri Sep 06 2013 - 03:52:40 CDT)
• AutoHotkey script for managing VMD windows
  • Ajasja LjubetiÄ� (Fri Apr 09 2010 - 07:56:42 CDT)
• Autoi::sod2pot problem in "Modeling Nanopores for Sequencing DNA" tutorial
  • Basheer Subei (Fri Aug 15 2014 - 14:07:12 CDT)
  • Maxim Belkin (Fri Aug 15 2014 - 13:54:08 CDT)
  • Basheer Subei (Fri Aug 15 2014 - 13:45:20 CDT)
• AutoIMD
  • John Stone (Fri Oct 15 2004 - 16:36:38 CDT)
  • Luis Rosales (Wed Oct 06 2004 - 02:50:02 CDT)
• AutoIMD and fixedatoms
  • Jordi Cohen (Tue Feb 01 2005 - 12:32:38 CST)
  • Luis Rosales (Mon Jan 31 2005 - 21:47:12 CST)
• autoimd error
  • Jordi Cohen (Wed Jun 15 2005 - 13:13:25 CDT)
  • Anna Modzelewska (Wed Jun 15 2005 - 09:35:01 CDT)
• AutoIMD on VMD 1.8.3
  • John Stone (Thu Mar 03 2005 - 10:42:24 CST)
  • Luis Rosales (Wed Mar 02 2005 - 20:24:46 CST)
• AutoIMD on vmd 1.8.6 IRIX....
  • John Stone (Mon May 14 2007 - 12:52:34 CDT)
  • Luis Rosales (Fri May 11 2007 - 19:48:16 CDT)
• autoimd on windows
  • Anna Modzelewska (Wed Jun 22 2005 - 11:51:22 CDT)
  • Anna Modzelewska (Wed Jun 22 2005 - 05:29:52 CDT)
  • John Stone (Tue Jun 21 2005 - 15:43:11 CDT)
  • Anna Modzelewska (Mon Jun 20 2005 - 06:40:29 CDT)
• AutoIMD with Periodic Boundary Conditions
  • Robert Johnson (Tue Jun 18 2013 - 11:43:13 CDT)
• autoionization error in VMD
  • Ajasja LjubetiÄ� (Fri Jul 12 2013 - 04:53:34 CDT)
  • melis.yildirim_at_boun.edu.tr (Fri Jul 12 2013 - 03:21:25 CDT)
• autoionize
  • Jacopo Sgrignani (Wed Sep 07 2011 - 09:00:02 CDT)
  • Lei Guo (Fri Dec 05 2003 - 17:36:26 CST)
• autoionize "error procesing bonds"
  • John Stone (Wed Mar 22 2006 - 16:58:16 CST)
  • George M Giambasu (Mon Mar 20 2006 - 16:50:28 CST)
• Autoionize / SODIUM
  • Blake Charlebois (Mon Jan 24 2005 - 17:04:58 CST)
  • John Stone (Fri Jan 21 2005 - 17:30:29 CST)
  • Blake Charlebois (Sun Jan 16 2005 - 12:14:04 CST)
• autoionize adds too many ions
  • Goldsmith, Jacob (Wed Jul 20 2011 - 12:10:28 CDT)
  • Leonardo Trabuco (Wed Jul 20 2011 - 10:30:02 CDT)
  • JC Gumbart (Wed Jul 20 2011 - 10:20:35 CDT)
  • Leonardo Trabuco (Wed Jul 20 2011 - 09:41:03 CDT)
  • Edward Lyman (Fri Jul 15 2011 - 14:34:48 CDT)
• autoionize behaviour on big systems
  • John Stone (Mon Aug 28 2006 - 01:21:49 CDT)
  • L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 01:12:18 CDT)
  • John Stone (Mon Aug 28 2006 - 00:59:33 CDT)
  • L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 00:44:24 CDT)
• Autoionize does not neutralize the system
  • Parisa Akhski (Wed Jul 07 2010 - 10:04:12 CDT)
  • Axel Kohlmeyer (Tue Jul 06 2010 - 16:01:03 CDT)
  • John Stone (Tue Jul 06 2010 - 15:39:48 CDT)
  • Parisa Akhski (Tue Jul 06 2010 - 14:36:20 CDT)
  • John Stone (Tue Jul 06 2010 - 10:42:58 CDT)
  • John Stone (Tue Jul 06 2010 - 10:16:43 CDT)
  • Axel Kohlmeyer (Tue Jul 06 2010 - 09:49:19 CDT)
  • Parisa Akhski (Tue Jul 06 2010 - 09:16:20 CDT)
• autoionize error in vmd
  • Tristan Croll (Sat Jul 27 2013 - 15:27:25 CDT)
  • Rajan Vatassery (Fri Jul 26 2013 - 12:55:36 CDT)
  • Revthi Sanker (Fri Jul 26 2013 - 09:53:30 CDT)
  • Jiawei Xu (Fri Jan 11 2013 - 14:50:26 CST)
  • Rajan Vatassery (Fri Jan 11 2013 - 14:44:39 CST)
  • Jiawei Xu (Fri Jan 11 2013 - 14:22:13 CST)
  • Rajan Vatassery (Fri Jan 11 2013 - 14:05:47 CST)
  • Jiawei Xu (Fri Jan 11 2013 - 11:28:46 CST)
  • Shaherin Basith (Fri Jan 11 2013 - 02:06:22 CST)
• autoionize not neutralizing the system
  • Giacomo Fiorin (Mon Aug 07 2017 - 07:18:28 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 23:14:38 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 23:07:36 CDT)
  • Ashar Malik (Sun Aug 06 2017 - 22:41:58 CDT)
  • Axel Kohlmeyer (Sun Aug 06 2017 - 22:26:32 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 21:30:32 CDT)
  • Albers, Thomas (Sun Aug 06 2017 - 12:26:58 CDT)
  • Ashar Malik (Sun Aug 06 2017 - 11:11:45 CDT)
  • Roshan Shrestha (Sun Aug 06 2017 - 11:50:49 CDT)
  • Chitrak Gupta (Sun Aug 06 2017 - 11:50:54 CDT)
  • Giacomo Fiorin (Sun Aug 06 2017 - 10:46:37 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 09:51:29 CDT)
• Autoionize plugin
  • Rabab Toubar (Wed Nov 19 2008 - 10:07:33 CST)
  • bo liu (Wed Nov 19 2008 - 08:42:58 CST)
  • JC Gumbart (Wed Nov 19 2008 - 00:23:56 CST)
  • Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
• autoionize plugin parsing error (vmd 1.9.3 )
  • Steven(Yuhang) Wang (Fri Jan 06 2017 - 11:12:14 CST)
  • Jim Phillips (Fri Jan 06 2017 - 10:53:40 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 22:41:02 CST)
  • Peter Freddolino (Wed Jan 04 2017 - 21:23:48 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 20:20:33 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 20:10:38 CST)
  • Peter Freddolino (Wed Jan 04 2017 - 20:11:44 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 20:08:33 CST)
  • Peter Freddolino (Wed Jan 04 2017 - 20:01:57 CST)
  • Wang, Steven (Wed Jan 04 2017 - 16:57:19 CST)
• Autoionize plugin problem
  • John Stone (Thu Dec 16 2004 - 11:30:21 CST)
  • Gaurav Sharma (Tue Dec 14 2004 - 12:52:03 CST)
• autoionize plugin..
  • hl332_at_drexel.edu (Mon Jul 10 2006 - 11:38:16 CDT)
• Autoionize question for DNA molecule
  • Parisa Akhski (Fri Sep 17 2010 - 16:11:50 CDT)
  • Peter Freddolino (Tue Sep 14 2010 - 18:55:35 CDT)
  • Parisa Akhski (Tue Sep 14 2010 - 17:45:52 CDT)
  • Eduard Schreiner (Mon Jul 12 2010 - 11:08:02 CDT)
  • Parisa Akhski (Mon Jul 12 2010 - 10:10:11 CDT)
• autoionize script
  • amodzelewska_at_dns.iimcb.gov.pl (Sun May 16 2004 - 13:21:58 CDT)
• Autoionize with non water solvent
  • Georcki Ropon (Sat Nov 20 2021 - 13:35:42 CST)
  • Nathan Kern (Sat Nov 20 2021 - 13:16:21 CST)
  • Francesco Pietra (Sat Nov 20 2021 - 09:11:49 CST)
• autoionize with polyatomic ions
  • Bennion, Brian (Mon Aug 18 2014 - 16:06:29 CDT)
• automate pdb processing
  • Martin, Erik W (Thu Apr 17 2014 - 16:32:13 CDT)
• Automate QwikMD?
  • João Ribeiro KS (Tue Dec 20 2016 - 17:19:22 CST)
  • Vermaas, Joshua (Tue Dec 20 2016 - 16:43:39 CST)
  • Danny Xu (Tue Dec 20 2016 - 15:23:28 CST)
• automated loading
  • Myunggi Yi (Mon Sep 21 2009 - 11:53:53 CDT)
  • Axel Kohlmeyer (Mon Sep 21 2009 - 11:18:17 CDT)
  • John Stone (Mon Sep 21 2009 - 11:17:21 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 11:01:19 CDT)
• automatic extraction of RMSD values of the heavy atoms of residues from NAMD output?
  • Andras Borosy (Tue Aug 05 2014 - 03:10:51 CDT)
• Automatic loading of mol2 files
  • Peter Freddolino (Wed May 23 2007 - 10:52:12 CDT)
  • FyD (Wed May 23 2007 - 10:42:17 CDT)
• automatic PSF builder
  • Axel Kohlmeyer (Mon Dec 13 2010 - 04:03:50 CST)
  • leila karami (Mon Dec 13 2010 - 02:22:19 CST)
  • Francesco Oteri (Sun Dec 12 2010 - 10:00:52 CST)
  • leila karami (Sun Dec 12 2010 - 08:25:03 CST)
• Automatic PSF Builder Help
  • Peter Freddolino (Mon Aug 06 2007 - 15:59:17 CDT)
  • Audrey Salazar (Mon Aug 06 2007 - 14:47:08 CDT)
  • Audrey Salazar (Mon Aug 06 2007 - 14:27:52 CDT)
  • Peter Freddolino (Mon Aug 06 2007 - 12:45:09 CDT)
  • Axel Kohlmeyer (Mon Aug 06 2007 - 11:29:16 CDT)
  • Peter Freddolino (Mon Aug 06 2007 - 11:46:46 CDT)
  • Audrey Salazar (Mon Aug 06 2007 - 11:16:12 CDT)
• Automatically shutting down VMD after NAMD terminates IMD connection
  • Claw Isthelaw (Sun May 20 2007 - 16:20:30 CDT)
  • John Stone (Sun May 20 2007 - 13:13:04 CDT)
  • Claw Isthelaw (Sat May 19 2007 - 13:23:42 CDT)
• Automatically zoom so that the protein fill the display
  • Emmanuel Levy (Mon Mar 10 2008 - 15:03:40 CDT)
  • John Stone (Mon Mar 10 2008 - 14:17:27 CDT)
  • John Stone (Mon Mar 10 2008 - 14:36:02 CDT)
  • Axel Kohlmeyer (Mon Mar 10 2008 - 13:50:50 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 14:28:30 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 14:30:51 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 13:21:46 CDT)
• automating graphic representations
  • Axel Kohlmeyer (Fri Aug 24 2007 - 13:08:44 CDT)
  • Jim Pfaendtner (Fri Aug 24 2007 - 13:55:00 CDT)
  • Axel Kohlmeyer (Wed Aug 22 2007 - 13:33:03 CDT)
  • John Stone (Wed Aug 22 2007 - 13:44:19 CDT)
  • Jim Pfaendtner (Wed Aug 22 2007 - 13:37:41 CDT)
• Automating VMD
  • Ashar Malik (Thu May 03 2018 - 17:40:36 CDT)
  • Oscar Bastidas (Thu May 03 2018 - 16:51:01 CDT)
• Automation of Analysis from QwikMD and Loading Trajectory Without Water in QwikMD
  • Diego Gomes (Wed Sep 07 2022 - 16:43:28 CDT)
  • Efthymiou, Christos (Thu Sep 01 2022 - 08:48:31 CDT)
• autopfs: unknown atom type error when processing ATP
  • Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
  • Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
  • Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
  • Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
  • Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
  • Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
  • Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
• autopsf
  • Prof. Eddie (Fri Jun 14 2013 - 11:23:39 CDT)
  • Josh Vermaas (Tue Jun 04 2013 - 11:55:58 CDT)
  • Prof. Eddie (Tue Jun 04 2013 - 07:11:31 CDT)
  • Prof. Eddie (Wed May 29 2013 - 08:56:48 CDT)
  • Josh Vermaas (Wed May 29 2013 - 07:52:53 CDT)
  • Prof. Eddie (Tue May 28 2013 - 16:27:32 CDT)
  • Jiawei Xu (Tue May 28 2013 - 15:45:46 CDT)
  • Prof. Eddie (Tue May 28 2013 - 14:43:16 CDT)
  • Donovan B.T. (Fri Apr 20 2012 - 04:29:53 CDT)
  • Peter Freddolino (Fri Jul 20 2007 - 13:59:56 CDT)
  • snoze pa (Fri Jul 20 2007 - 12:42:18 CDT)
  • lily jin (Thu Mar 15 2007 - 17:35:56 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 17:13:38 CDT)
  • Peter Freddolino (Thu Mar 15 2007 - 17:13:00 CDT)
  • lily jin (Thu Mar 15 2007 - 17:02:37 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 16:41:55 CDT)
  • lily jin (Thu Mar 15 2007 - 16:33:48 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 15:56:59 CDT)
  • Peter Freddolino (Thu Mar 15 2007 - 15:29:05 CDT)
  • lily jin (Thu Mar 15 2007 - 15:23:32 CDT)
• Autopsf CGenFF input
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 10:16:30 CDT)
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 09:47:20 CDT)
  • Peter Freddolino (Tue Jul 17 2018 - 09:52:42 CDT)
  • Peter Freddolino (Tue Jul 17 2018 - 09:37:37 CDT)
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 08:56:10 CDT)
  • Peter Freddolino (Tue Jul 17 2018 - 08:00:32 CDT)
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 03:59:29 CDT)
• AutoPSF charge generation
  • Peter Freddolino (Sat Jul 06 2019 - 21:00:48 CDT)
  • Adupa Vasista (Sat Jul 06 2019 - 04:28:55 CDT)
• AutoPSF deleting residues
  • Peter Freddolino (Tue Jun 15 2010 - 20:33:02 CDT)
  • Kelly Leung (Tue Jun 15 2010 - 10:35:38 CDT)
• Autopsf error
  • Amir Zeb (Mon Jul 05 2021 - 21:48:42 CDT)
  • Peter Freddolino (Thu Nov 08 2018 - 11:29:36 CST)
  • FRANCESCO TORRICELLA (Thu Nov 08 2018 - 08:58:57 CST)
  • Tristan Croll (Thu Jul 31 2014 - 20:27:43 CDT)
  • Moumita Saharay (Wed Jul 30 2014 - 06:06:53 CDT)
  • Kukol, Andreas (Wed Jul 30 2014 - 05:12:20 CDT)
• AutoPSF error vecsub
  • Francesco Pietra (Mon Feb 03 2020 - 03:32:49 CST)
  • Peter Freddolino (Sun Feb 02 2020 - 11:19:46 CST)
  • Francesco Pietra (Sun Feb 02 2020 - 09:53:28 CST)
  • Peter Freddolino (Sun Feb 02 2020 - 08:04:37 CST)
  • Francesco Pietra (Sat Feb 01 2020 - 14:59:02 CST)
• AutoPSF error with glycana (end of segment error)
  • Steinar Halldorsson (Thu Oct 25 2018 - 07:25:24 CDT)
  • Rune Thomas Kidmose (Tue Oct 23 2018 - 10:21:44 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 16:22:32 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 11:46:39 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 10:05:01 CDT)
  • Steinar Halldorsson (Mon Oct 22 2018 - 10:16:32 CDT)
  • Steinar Halldorsson (Mon Oct 22 2018 - 08:58:12 CDT)
• autopsf error: failed on end of segment
  • Francesco Pietra (Tue Dec 21 2010 - 11:49:14 CST)
• AutoPSF errors
  • Peter Freddolino (Tue Jun 22 2010 - 20:16:06 CDT)
  • Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
  • Emily Chen (Mon Jun 21 2010 - 14:06:19 CDT)
• autopsf errors in vmd1.8.5
  • Peter Freddolino (Mon Oct 30 2006 - 12:18:43 CST)
  • Brian Bennion (Mon Oct 30 2006 - 12:09:54 CST)
• Autopsf Failed on end of segment
  • Francesco Pietra (Tue Nov 03 2020 - 12:52:28 CST)
  • Peter Freddolino (Tue Nov 03 2020 - 11:07:14 CST)
  • Francesco Pietra (Tue Nov 03 2020 - 06:55:01 CST)
• AutoPSF formatted PDB: wrong residue order
  • Bryan Roessler (Fri Feb 02 2018 - 14:04:43 CST)
  • Pawel Kedzierski (Fri Feb 02 2018 - 05:45:47 CST)
  • Bryan Roessler (Fri Feb 02 2018 - 04:09:33 CST)
• autopsf from console
  • Peter Freddolino (Thu Jul 17 2008 - 12:52:33 CDT)
  • brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
• autopsf generator need at least one atom error
  • John Stone (Sun Jan 24 2010 - 13:51:27 CST)
  • Ronald Salesky (Sun Jan 24 2010 - 12:29:12 CST)
• autopsf needs at least one atom error
  • John Stone (Sun Jan 24 2010 - 14:18:22 CST)
  • Ronald Salesky (Sun Jan 24 2010 - 14:09:57 CST)
  • Peter Freddolino (Sun Jan 24 2010 - 13:55:07 CST)
  • Ronald Salesky (Sun Jan 24 2010 - 12:43:51 CST)
• Autopsf Not Generating Atom Numbers Beyond 99999
  • Stefan Lyne Oliver (Wed Mar 01 2023 - 13:41:26 CST)
• Autopsf problem
  • Kevin Chan (Tue Sep 15 2015 - 21:30:24 CDT)
  • Kevin Chan (Tue Sep 15 2015 - 21:24:16 CDT)
  • Josh Vermaas (Tue Sep 15 2015 - 09:48:02 CDT)
  • Kevin C Chan (Tue Sep 15 2015 - 08:53:57 CDT)
• autopsf question
  • McGuire, Kelly (Sat Feb 05 2022 - 19:22:13 CST)
  • Peter Freddolino (Sat Feb 05 2022 - 18:27:49 CST)
  • McGuire, Kelly (Sat Feb 05 2022 - 16:33:09 CST)
• autoPSF with a POPC membrane
  • Peter Freddolino (Tue May 08 2007 - 18:19:12 CDT)
  • Peter Freddolino (Mon May 07 2007 - 20:40:47 CDT)
  • Stephen M. Dutz (Mon May 07 2007 - 19:37:25 CDT)
• autopsf with many modifiers
  • Francesco Pietra (Sat Sep 11 2021 - 09:21:24 CDT)
• autopsf-patches C++ error 'expected integer but got "" ""'
  • Peter Freddolino (Thu Feb 24 2011 - 21:28:18 CST)
  • John Stone (Wed Feb 23 2011 - 16:54:55 CST)
  • Francesco Pietra (Wed Feb 23 2011 - 15:03:16 CST)
  • Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
  • John Stone (Wed Feb 23 2011 - 10:34:09 CST)
  • John Stone (Wed Feb 23 2011 - 10:47:31 CST)
  • Francesco Pietra (Wed Feb 23 2011 - 10:21:11 CST)
• autopsf: can't read "logfilename"
  • John Stone (Thu Mar 29 2012 - 10:44:28 CDT)
  • Francesco Pietra (Sat Mar 24 2012 - 11:46:15 CDT)
• autopsfgen looking for wrong angle
  • Francesco Pietra (Thu Nov 18 2021 - 02:21:33 CST)
• Autopsfgen verbose error output?
  • Peter Freddolino (Wed May 01 2019 - 21:26:03 CDT)
  • Francesco Pietra (Wed May 01 2019 - 16:56:22 CDT)
  • Peter Freddolino (Wed May 01 2019 - 14:54:52 CDT)
  • Francesco Pietra (Wed May 01 2019 - 13:24:31 CDT)
• autostereograms in VMD?
  • John Stone (Mon Jul 05 2004 - 13:52:38 CDT)
  • Karsten Suhre (Fri Jul 02 2004 - 02:42:11 CDT)
• Average angle between the lipid dipole vector and the bilayer normal.
  • Andrés Morales (Wed Apr 11 2012 - 16:43:01 CDT)
  • John Stone (Wed Apr 11 2012 - 14:06:52 CDT)
  • Andrés Morales (Mon Apr 09 2012 - 12:55:17 CDT)
  • Andrés Morales (Mon Apr 09 2012 - 12:45:44 CDT)
• average area per lipid
  • Stephen Dutz (Mon Mar 03 2008 - 16:06:44 CST)
  • Stephen Dutz (Mon Mar 03 2008 - 11:14:11 CST)
• Average coordinates
  • Axel Kohlmeyer (Thu Jun 24 2004 - 23:48:36 CDT)
  • Ahmet Bakan (Thu Jun 24 2004 - 13:51:12 CDT)
• average pdb from dcd file
  • sajad falsafi (Thu Oct 27 2011 - 11:40:38 CDT)
  • Bjoern Olausson (Thu Oct 27 2011 - 09:54:06 CDT)
  • hamze rahimi (Thu Oct 27 2011 - 07:39:53 CDT)
• Average pocket size?
  • Thomas Evangelidis (Wed Apr 18 2012 - 13:51:11 CDT)
  • patrick wintrode (Wed Apr 18 2012 - 11:45:04 CDT)
• Average position of atom set
  • Leonardo Trabuco (Tue Nov 04 2008 - 20:11:01 CST)
  • Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
• average radius of cavity over many frames from hole
  • maria goranovic (Wed Jul 06 2011 - 02:28:49 CDT)
• Average strcuture
  • Andres Morales N (Tue May 19 2009 - 10:21:28 CDT)
  • jen hsin (Tue May 19 2009 - 09:08:41 CDT)
  • Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
• Average structure
  • Ashar Malik (Wed Mar 21 2018 - 02:55:20 CDT)
  • Williams Miranda (Wed Mar 21 2018 - 01:37:13 CDT)
  • Peter Freddolino (Thu Mar 15 2007 - 14:39:21 CDT)
  • Per Jr. Greisen (Thu Mar 15 2007 - 14:14:20 CDT)
  • Eduard Schreiner (Tue Feb 13 2007 - 06:52:21 CST)
  • dimka (Mon Feb 12 2007 - 13:42:33 CST)
• Average structure and NamdEnergy
  • John Stone (Thu Sep 17 2009 - 11:35:58 CDT)
  • Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
  • Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
• Average Structure and RMSD
  • John Stone (Wed Jun 21 2006 - 13:29:44 CDT)
  • griadi_at_utalca.cl (Wed Jun 21 2006 - 11:28:33 CDT)
• average structure generation from trajectory
  • Axel Kohlmeyer (Thu Apr 11 2013 - 03:16:30 CDT)
  • Sindrila Dutta Banik (Thu Apr 11 2013 - 02:00:10 CDT)
• average structure script
  • Toni Giorgino (Fri Nov 25 2011 - 11:21:28 CST)
  • Ajasja LjubetiÄ� (Fri Nov 25 2011 - 11:09:59 CST)
  • flavio seixas (Fri Nov 25 2011 - 09:52:40 CST)
• Average structure using multiple frame trajectory
  • Ashar Malik (Thu May 25 2017 - 06:07:34 CDT)
  • Shashank Ranjan Srivastava (Thu May 25 2017 - 05:24:07 CDT)
• average structure/solute and solvent
  • Alex Liu (Wed Nov 24 2010 - 10:19:28 CST)
  • Alex Liu (Tue Nov 23 2010 - 09:21:31 CST)
• average z-coordinate of a selection
  • Nitin Bhardwaj (Tue Dec 19 2006 - 11:08:42 CST)
  • Nitin Bhardwaj (Tue Dec 19 2006 - 10:54:29 CST)
• averaged structure
  • Axel Kohlmeyer (Tue Aug 12 2014 - 14:18:33 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 12:47:56 CDT)
  • Irene Newhouse (Tue Aug 12 2014 - 12:45:19 CDT)
  • Axel Kohlmeyer (Tue Aug 12 2014 - 12:35:25 CDT)
  • Cesar Millan (Tue Aug 12 2014 - 12:15:11 CDT)
  • Ajasja LjubetiÄ� (Tue Aug 12 2014 - 12:21:28 CDT)
  • John Stone (Tue Aug 12 2014 - 12:05:15 CDT)
  • Josh Vermaas (Tue Aug 12 2014 - 11:49:12 CDT)
  • John Stone (Tue Aug 12 2014 - 11:54:34 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 12:01:02 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 11:42:05 CDT)
  • Josh Vermaas (Tue Aug 12 2014 - 09:36:49 CDT)
  • John Stone (Tue Aug 12 2014 - 10:05:56 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 06:30:30 CDT)
• Averaging volmaps
  • Cesar Luis Avila (Thu Sep 06 2007 - 10:11:36 CDT)
• Avoid atom indices reassignment
  • Liel Sapir (Wed Dec 15 2021 - 03:04:01 CST)
  • Jérôme Hénin (Mon Dec 13 2021 - 09:42:33 CST)
  • Liel Sapir (Mon Dec 13 2021 - 08:46:42 CST)
• Avoid vmd closing with script
  • Guenegou, Guillaume [ORDFR] (Tue Jul 26 2011 - 01:54:44 CDT)
  • Axel Kohlmeyer (Mon Jul 25 2011 - 09:31:45 CDT)
  • Guenegou, Guillaume [ORDFR] (Mon Jul 25 2011 - 08:31:01 CDT)
• avoiding distance based bond search when reading a PDB file
  • John Stone (Thu Nov 14 2002 - 15:25:53 CST)
  • Christophe Guilbert (Thu Nov 14 2002 - 14:31:17 CST)
• AVX512 support on Linux.
  • Josh Vermaas (Thu Nov 19 2020 - 11:15:29 CST)
  • John Stone (Thu Nov 19 2020 - 11:04:31 CST)
  • Zhu Liang (Thu Nov 19 2020 - 10:33:42 CST)
• AW: "OpenGL Display" and "VMD Main" windows; size and location on launch
  • Norman Geist (Mon Sep 29 2014 - 00:49:34 CDT)
• AW: A fill for "bodies" build out of surfacs
  • Daniel Möller (Mon May 07 2018 - 16:31:37 CDT)
• AW: Accessible volume around an atom
  • Norman Geist (Thu Aug 28 2014 - 03:41:21 CDT)
• AW: Affordable 3D stereo.
  • Norman Geist (Wed Jan 31 2018 - 01:08:09 CST)
• AW: Align only translation not rotation
  • Norman Geist (Tue Sep 15 2015 - 01:40:02 CDT)
• AW: Align specific residues of two structures
  • Norman Geist (Mon Mar 31 2014 - 00:35:37 CDT)
• AW: Animate Molekul
  • Norman Geist (Tue Apr 05 2016 - 09:53:28 CDT)
• AW: Antw: AW: Oculus Rift DK2
  • Christian Wohlschlager (Wed Dec 10 2014 - 04:49:00 CST)
  • Norman Geist (Mon Dec 01 2014 - 03:15:36 CST)
• AW: Any interest in VMD supporting mirror reflections w/ ray tracing?
  • Daniel Möller (Fri Nov 28 2014 - 06:53:01 CST)
  • Norman Geist (Thu Nov 27 2014 - 10:31:26 CST)
• AW: Assigning different temperatures in the same simulaiton
  • Norman Geist (Tue Apr 01 2014 - 00:21:03 CDT)
  • Norman Geist (Tue Apr 01 2014 - 00:07:02 CDT)
• AW: Average structure
  • Norman Geist (Wed Mar 21 2018 - 04:02:14 CDT)
• AW: AW: AW: How to smooth atom labels in a MD trajectory?
  • sunyeping (Mon Aug 22 2016 - 09:12:01 CDT)
  • Norman Geist (Mon Aug 22 2016 - 08:32:34 CDT)
  • Norman Geist (Mon Aug 22 2016 - 08:42:30 CDT)
• AW: AW: AW: VMD warnings
  • Norman Geist (Mon Oct 27 2014 - 03:05:14 CDT)
• AW: AW: AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • Norman Geist (Wed Dec 11 2013 - 01:06:44 CST)
• AW: AW: hydrogen bond criteria
  • Hamid (Fri Dec 06 2013 - 13:42:53 CST)
  • Norman Geist (Fri Dec 06 2013 - 01:14:33 CST)
• AW: AW: namd-l: FATAL ERROR: seek failed while writing DCD file: No such file or directory
  • John Stone (Fri Dec 19 2014 - 12:10:47 CST)
  • Norman Geist (Fri Dec 19 2014 - 02:45:26 CST)
• AW: AW: Simplest file format that includes atom color?
  • Philippe Bopp (Thu Feb 13 2014 - 06:34:59 CST)
  • Norman Geist (Thu Feb 13 2014 - 03:28:18 CST)
• AW: AW: The quality of movie made by VMD
  • andrea spitaleri (Thu Jan 22 2015 - 04:40:35 CST)
  • Norman Geist (Wed Jan 21 2015 - 09:18:17 CST)
• AW: AW: VMD warnings
  • Norman Geist (Fri Oct 24 2014 - 13:01:27 CDT)
• AW: AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • John Stone (Wed Dec 11 2013 - 01:10:51 CST)
  • Norman Geist (Tue Dec 10 2013 - 00:57:37 CST)
• AW: AW: why vmd cannot load the dcd trajectory?
  • Norman Geist (Tue Jan 10 2017 - 03:18:54 CST)
• AW: BUG(s): vmd-1.9.2b
  • Norman Geist (Thu Oct 30 2014 - 09:25:36 CDT)
• AW: BUG? Hbond rep brakes RowInterleaved Stereo VMD 1.9.2a35
  • Norman Geist (Mon May 19 2014 - 02:33:46 CDT)
• AW: Building NAMD 2.12 from Source with IB and CUDA
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 02 2017 - 05:53:58 CST)
  • Norman Geist (Thu Mar 02 2017 - 04:37:40 CST)
• AW: calculating total energy
  • Norman Geist (Mon Sep 16 2013 - 01:44:38 CDT)
• AW: Cannot start VMD in background from a script
  • Norman Geist (Mon Jun 23 2014 - 03:29:50 CDT)
• AW: Center camera rotation on a molid
  • Norman Geist (Thu Mar 02 2017 - 07:30:55 CST)
• AW: Certain combinations of X-server and X-client do not allow VMD to start
  • Norman Geist (Tue Sep 17 2013 - 05:23:26 CDT)
• AW: Change bond per atom limit of VMD
  • Norman Geist (Wed Jan 07 2015 - 05:41:11 CST)
• AW: Change transparency along a trajectory
  • Norman Geist (Mon Dec 09 2013 - 08:58:33 CST)
• AW: changing chain id and pdb generating
  • Norman Geist (Thu Dec 12 2013 - 06:55:01 CST)
• AW: code precision problem
  • Norman Geist (Thu Apr 17 2014 - 01:29:04 CDT)
• AW: coloring scheme in "VolumeSlice"
  • Norman Geist (Mon Jan 19 2015 - 02:34:06 CST)
• AW: CUDA acceleration for Tachyon rendering?
  • Norman Geist (Fri Dec 02 2016 - 01:51:05 CST)
• AW: Define the percentage of zoom
  • Norman Geist (Tue Feb 23 2016 - 01:35:16 CST)
• AW: Defining a layer for a micelle
  • Norman Geist (Tue May 14 2019 - 01:17:08 CDT)
• AW: Display representations with Tk Console
  • Daniel Möller (Thu Oct 11 2018 - 14:54:29 CDT)
• AW: Do I need a "professional" graphics card?
  • Norman Geist (Mon Feb 10 2014 - 01:43:22 CST)
  • Norman Geist (Mon Feb 10 2014 - 01:38:00 CST)
• AW: Does the VMD Linux 64-bit version perform better than the Windows 32-bit when visualizing large molecules?
  • Norman Geist (Wed Aug 06 2014 - 00:35:18 CDT)
• AW: Draw arrows in trajectory file
  • Norman Geist (Tue Dec 20 2016 - 07:55:37 CST)
  • Norman Geist (Tue Dec 20 2016 - 02:37:41 CST)
• AW: Error connecting to localhost on port 3000 and IMD connection ended unexpectedly; connection terminated.
  • Norman Geist (Thu Oct 27 2016 - 07:50:51 CDT)
• AW: Error: not possible to build nodeSelString: () and ()
  • John Stone (Tue Jul 03 2018 - 11:14:40 CDT)
  • Sophie Mader (Thu Jun 28 2018 - 07:37:02 CDT)
• AW: Exactly align view direction to coordinate axes
  • Norman Geist (Thu Jun 30 2016 - 01:30:04 CDT)
• AW: Fast PBC wrapping in VMD
  • Norman Geist (Thu Nov 17 2016 - 02:05:46 CST)
• AW: Feature Request: Stride on vmd commandline startup
  • Norman Geist (Wed Jan 14 2015 - 02:23:12 CST)
• AW: fftk-charges
  • Norman Geist (Mon Oct 21 2013 - 07:59:53 CDT)
• AW: format I should use if I have different total number of atoms for each timesteps
  • Norman Geist (Fri Dec 12 2014 - 02:43:08 CST)
• AW: Fwd: distance using pbc
  • Norman Geist (Wed Mar 02 2016 - 01:53:56 CST)
• AW: Fwd: VMD 1.9.2 released!
  • Norman Geist (Tue Jan 13 2015 - 01:16:34 CST)
• AW: Gaussian *.log/out visualize
  • Norman Geist (Mon Mar 21 2016 - 02:41:13 CDT)
• AW: Generating PSF for several proteins in one shot
  • Daniel Möller (Sat Aug 08 2015 - 05:39:58 CDT)
• AW: Get num. of residues
  • Norman Geist (Wed Mar 19 2014 - 03:56:12 CDT)
• AW: get resname from resid
  • Norman Geist (Tue Apr 15 2014 - 06:30:32 CDT)
• AW: GPU accelerated MD
  • Norman Geist (Fri Oct 23 2015 - 07:18:01 CDT)
• AW: graphics in VMD and overlay
  • Norman Geist (Wed Nov 15 2017 - 01:24:53 CST)
• AW: H-Bonds not shown when loading by topo readlammpsdata
  • Norman Geist (Mon Dec 08 2014 - 01:49:11 CST)
• AW: HBonds Plugin - Hbonds criteria
  • Norman Geist (Wed Jan 25 2017 - 02:19:24 CST)
• AW: hiding atoms outside the unit cell
  • Norman Geist (Fri Jun 10 2016 - 01:55:01 CDT)
• AW: how can we improve it in VMD?
  • Norman Geist (Tue Dec 10 2013 - 08:13:44 CST)
• AW: How do I define "collision only" atoms using MSMS?
  • Norman Geist (Thu Aug 20 2020 - 02:24:05 CDT)
• AW: How to constrain a atom
  • Norman Geist (Mon Jan 05 2015 - 00:54:35 CST)
• AW: how to control the superposition (measure fit) ?
  • Vlad Cojocaru (Sat Apr 12 2014 - 05:49:13 CDT)
  • Norman Geist (Fri Apr 11 2014 - 09:20:06 CDT)
• AW: How to create an aggregation of molecules with VMD?
  • Daniel Möller (Tue May 05 2015 - 02:13:30 CDT)
• AW: how to enable multiple core rendering?
  • John Stone (Thu Sep 05 2013 - 09:43:18 CDT)
  • Albert (Thu Sep 05 2013 - 04:02:10 CDT)
• AW: How to increase the number of core
  • Norman Geist (Wed Feb 26 2020 - 01:59:33 CST)
• AW: How to make solid surfaces work with non-orthorhombic cells
  • Norman Geist (Fri Nov 28 2014 - 05:49:09 CST)
• AW: how to make the structures in the movie look better
  • Sebastián Gutiérrez (Mon Oct 20 2014 - 15:10:32 CDT)
  • Felipe Merino (Mon Sep 29 2014 - 09:28:49 CDT)
  • Norman Geist (Mon Sep 29 2014 - 07:58:00 CDT)
• AW: how to measure the thickness of the water shell
  • sunyeping (Tue Oct 27 2015 - 09:11:59 CDT)
  • Norman Geist (Tue Oct 27 2015 - 06:28:09 CDT)
• AW: How to remove particular residues and then view "ramachandran plot" in VMD
  • Norman Geist (Thu Oct 09 2014 - 07:05:14 CDT)
• AW: How to smooth atom labels in a MD trajectory?
  • sunyeping (Mon Aug 22 2016 - 07:17:19 CDT)
  • Norman Geist (Mon Aug 22 2016 - 01:04:04 CDT)
• AW: How to work on multiple pdbs by tcl script?
  • Norman Geist (Tue Mar 22 2016 - 07:04:36 CDT)
• AW: hydrogen bond criteria
  • Norman Geist (Thu Dec 05 2013 - 07:10:21 CST)
• AW: ion visualization in VMD
  • andrea spitaleri (Thu Jan 22 2015 - 04:30:00 CST)
  • Norman Geist (Thu Jan 22 2015 - 03:34:26 CST)
• AW: IR Spectroscopy plugin questions
  • Daniel Möller (Thu Jun 04 2015 - 13:51:07 CDT)
  • Daniel Möller (Thu Jun 04 2015 - 12:57:00 CDT)
  • Daniel Möller (Thu Jun 04 2015 - 05:35:50 CDT)
• AW: Isosurface Render - No Color?
  • Daniel Möller (Tue Jun 21 2016 - 07:45:00 CDT)
• AW: issue drawing a PBC box centered on a selection
  • Daniel Möller (Fri Apr 01 2016 - 03:10:31 CDT)
• AW: loading electron density maps with a script
  • Norman Geist (Fri Feb 05 2016 - 02:30:05 CST)
  • Norman Geist (Thu Feb 04 2016 - 01:33:21 CST)
• AW: loading trajectory
  • Norman Geist (Tue Oct 22 2013 - 10:31:56 CDT)
• AW: log colorscale
  • Norman Geist (Mon Oct 06 2014 - 05:25:26 CDT)
• AW: making a movie in a tcl script using graphics commands
  • Norman Geist (Fri Jan 29 2016 - 05:02:16 CST)
• AW: making a movie of a atomselection of a very large trajectory
  • Norman Geist (Wed Mar 30 2016 - 03:57:05 CDT)
• AW: making self-adjustable high resolution images
  • Norman Geist (Wed Jan 28 2015 - 06:24:51 CST)
• AW: manually change secondary structure
  • Norman Geist (Mon Feb 24 2014 - 00:06:29 CST)
• AW: Measure Center Question
  • Norman Geist (Sun Oct 21 2018 - 04:02:15 CDT)
• AW: Measure Distance Script Question
  • Norman Geist (Fri Apr 27 2018 - 02:07:09 CDT)
• AW: measure Hbond and orient (with vec {0 0 1}) of a selected molecule
  • Norman Geist (Fri Apr 25 2014 - 06:36:35 CDT)
  • Norman Geist (Fri Apr 25 2014 - 05:39:11 CDT)
  • Norman Geist (Fri Apr 25 2014 - 02:49:20 CDT)
  • Norman Geist (Fri Apr 25 2014 - 01:13:38 CDT)
• AW: merging independent dcd files,
  • Norman Geist (Thu Jul 28 2016 - 02:42:45 CDT)
  • Norman Geist (Wed Jul 27 2016 - 02:04:09 CDT)
• AW: moving atoms and updating distances
  • Norman Geist (Mon Feb 15 2016 - 00:14:22 CST)
• AW: NAMD 2.11 Cuda does not work with Quadro FX 3800
  • Norman Geist (Sun Mar 13 2016 - 12:37:40 CDT)
• AW: namd-l: Solvation in non standard solvent
  • Josh Vermaas (Fri Feb 14 2014 - 12:41:36 CST)
  • Tim Lo (Fri Feb 14 2014 - 09:23:50 CST)
  • Norman Geist (Fri Feb 14 2014 - 06:47:51 CST)
• AW: namd2.exe has stopped working - NAMDEnergy
  • Daniel Möller (Tue Feb 03 2015 - 06:21:10 CST)
• AW: Native contacts tcl script crashed
  • Norman Geist (Thu Feb 18 2021 - 01:53:14 CST)
• AW: new structure file
  • Norman Geist (Tue Dec 01 2015 - 01:26:52 CST)
  • Norman Geist (Mon Nov 30 2015 - 23:51:22 CST)
• AW: number of water molecules within 5 angstroms of the ligand
  • Norman Geist (Wed May 07 2014 - 07:47:46 CDT)
  • Norman Geist (Wed May 07 2014 - 01:56:50 CDT)
  • Norman Geist (Tue May 06 2014 - 01:44:43 CDT)
  • Norman Geist (Mon May 05 2014 - 05:09:05 CDT)
  • Norman Geist (Mon May 05 2014 - 05:16:47 CDT)
• AW: obtain a list of residue numbers
  • Thomas C. Bishop (Tue Jul 08 2014 - 09:59:41 CDT)
  • Norman Geist (Tue Jul 08 2014 - 00:03:24 CDT)
• AW: Obtaining VMD view matrices for tcl script
  • Rune Thomas Kidmose (Mon Feb 19 2018 - 04:15:43 CST)
  • Norman Geist (Mon Feb 19 2018 - 02:39:47 CST)
• AW: Oculus Rift DK2
  • Norman Geist (Fri Nov 28 2014 - 05:33:58 CST)
• AW: pbc to keep membrane in center
  • Norman Geist (Wed Mar 02 2016 - 01:41:01 CST)
• AW: pbc wrap -center com
  • Norman Geist (Mon May 26 2014 - 02:20:27 CDT)
  • Norman Geist (Thu May 22 2014 - 06:10:23 CDT)
• AW: PhD position in Computational Structural Biology at MPI Muenster
  • Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
• AW: printing out trajectories with some random indices of atoms renamed frame by frame
  • Norman Geist (Mon Mar 07 2016 - 01:07:22 CST)
• AW: Problem with assignation of secondary structure in VMD
  • Matic Kisovec (Thu May 07 2015 - 07:48:28 CDT)
  • Stefan Doerr (Thu May 07 2015 - 04:34:02 CDT)
  • Matic Kisovec (Thu May 07 2015 - 00:41:07 CDT)
• AW: Problem with Kinetic Energy of Atomselection
  • Norman Geist (Wed Jan 07 2015 - 02:58:12 CST)
• AW: program errors
  • Norman Geist (Mon Dec 01 2014 - 02:09:08 CST)
• AW: Protein went out of the Box
  • Norman Geist (Wed Nov 12 2014 - 00:15:06 CST)
• AW: Quad buffered stereo from Quadro M4000 to HDMI monitor
  • Vlad Cojocaru (Tue Jan 17 2017 - 07:55:03 CST)
  • Greipel.Joachim_at_mh-hannover.de (Tue Jan 17 2017 - 07:12:12 CST)
• AW: query regarding phi-psi range for asigning secondary structure
  • Norman Geist (Mon Oct 12 2015 - 01:44:23 CDT)
  • Norman Geist (Fri Oct 09 2015 - 05:29:00 CDT)
  • Norman Geist (Fri Oct 09 2015 - 02:56:42 CDT)
• AW: Question
  • Norman Geist (Tue Dec 16 2014 - 04:03:18 CST)
• AW: question about reading more volumes via atomselect or removing of them
  • Daniel Möller (Thu Jan 14 2016 - 05:37:52 CST)
• AW: Re-centering protein molecule
  • Norman Geist (Wed Jan 28 2015 - 07:26:42 CST)
• AW: reg extracting coordinates for first water shell.
  • Norman Geist (Tue Feb 11 2014 - 09:38:29 CST)
• AW: Reg: Peptide dimer
  • Norman Geist (Tue Sep 30 2014 - 08:49:55 CDT)
• AW: regarding the coordinate transformation on a curved surface to plane surface
  • Norman Geist (Wed Jan 09 2019 - 02:13:09 CST)
• AW: Rendering snapshots
  • Norman Geist (Wed Aug 13 2014 - 11:56:14 CDT)
  • Norman Geist (Tue Aug 12 2014 - 10:57:54 CDT)
• AW: Residue numbers in outfiles PDB/GRO
  • Norman Geist (Fri Apr 01 2016 - 01:54:51 CDT)
  • Daniel Möller (Thu Mar 31 2016 - 13:31:36 CDT)
• AW: RE： select all residues in a molecule
  • Norman Geist (Mon Jun 30 2014 - 02:48:45 CDT)
• AW: SASA area
  • Norman Geist (Wed Feb 01 2017 - 01:44:51 CST)
  • Norman Geist (Tue Jan 31 2017 - 09:35:48 CST)
  • Norman Geist (Tue Jan 31 2017 - 05:05:52 CST)
• AW: Scale the molecule
  • Norman Geist (Wed Oct 15 2014 - 05:25:25 CDT)
• AW: secondary structure calculation at certain frame
  • Norman Geist (Wed Jul 09 2014 - 02:26:45 CDT)
• AW: secondary structure inconsistency
  • Norman Geist (Thu Apr 03 2014 - 00:40:31 CDT)
• AW: Secondary structure representation stays static
  • Daniel Möller (Mon Aug 27 2018 - 04:31:42 CDT)
• AW: select all residues in a molecule
  • Norman Geist (Mon Jun 30 2014 - 00:19:07 CDT)
• AW: select atoms within a sphere - atomselect
  • Norman Geist (Mon Jan 25 2016 - 01:09:42 CST)
• AW: Selecting atoms based on the charges
  • Norman Geist (Tue Nov 11 2014 - 03:32:24 CST)
• AW: Selecting atoms of same type in a certain distance (between X and Y angstroms away)
  • Norman Geist (Thu Jun 23 2016 - 01:22:06 CDT)
  • Norman Geist (Wed Jun 22 2016 - 10:58:55 CDT)
• AW: setting up a 4k HD TV for passive stereoscopic 3d
  • Norman Geist (Fri Apr 08 2016 - 01:46:12 CDT)
  • Norman Geist (Thu Apr 07 2016 - 00:30:41 CDT)
• AW: Simplest file format that includes atom color?
  • Norman Geist (Mon Feb 17 2014 - 06:08:07 CST)
  • Norman Geist (Mon Feb 17 2014 - 05:36:01 CST)
  • Olaf Lenz (Thu Feb 13 2014 - 04:42:45 CST)
  • Arham Amouie (Thu Feb 13 2014 - 02:51:07 CST)
  • Norman Geist (Thu Feb 13 2014 - 00:20:11 CST)
• AW: Sodium within distance
  • Thomas C. Bishop (Wed Jul 08 2015 - 09:51:10 CDT)
  • Daniel Möller (Tue Jul 07 2015 - 03:47:08 CDT)
• AW: speed of pbc join is slow
  • Norman Geist (Wed Mar 16 2016 - 04:52:28 CDT)
• AW: SScache performance; fast secondary structure assignment
  • Norman Geist (Tue Feb 04 2014 - 08:00:29 CST)
• AW: Superimpose Models
  • Norman Geist (Thu Nov 24 2016 - 01:39:44 CST)
• AW: Tachyon transparency and depth cueing
  • Tristan Croll (Thu Aug 21 2014 - 18:33:44 CDT)
  • John Stone (Thu Aug 21 2014 - 08:34:40 CDT)
  • Tristan Croll (Thu Aug 21 2014 - 05:15:30 CDT)
  • Norman Geist (Thu Aug 21 2014 - 04:42:53 CDT)
• AW: Tachyon-Optix failure when SSH X11
  • Norman Geist (Wed Oct 29 2014 - 03:01:50 CDT)
  • Norman Geist (Tue Oct 28 2014 - 09:31:36 CDT)
  • Norman Geist (Tue Oct 28 2014 - 08:57:59 CDT)
  • Norman Geist (Fri Oct 24 2014 - 07:15:21 CDT)
  • Norman Geist (Fri Oct 24 2014 - 02:10:23 CDT)
  • Norman Geist (Thu Oct 23 2014 - 10:48:28 CDT)
• AW: tcl command to write amber format files
  • Norman Geist (Wed Jan 27 2016 - 03:12:33 CST)
  • Norman Geist (Wed Jan 27 2016 - 03:10:18 CST)
• AW: tcl script for averaging a parameter along length
  • Norman Geist (Thu Jan 22 2015 - 06:11:42 CST)
• AW: TCL script to track molecules moving within a specified region each time frame
  • Norman Geist (Tue May 17 2016 - 00:02:49 CDT)
• AW: Tcl scripting - Coloring residues by frame along trajectory
  • Norman Geist (Mon Aug 11 2014 - 00:29:19 CDT)
• AW: TCL scripting question: how to make a list of atomselections persistent?
  • Tristan Croll (Fri Mar 28 2014 - 23:19:50 CDT)
  • Ivan Gregoretti (Fri Mar 28 2014 - 09:06:56 CDT)
  • Tristan Croll (Fri Mar 28 2014 - 03:45:22 CDT)
  • Norman Geist (Fri Mar 28 2014 - 03:02:24 CDT)
  • Norman Geist (Fri Mar 28 2014 - 03:00:02 CDT)
• AW: The quality of movie made by VMD
  • sunyeping (Wed Jan 21 2015 - 08:30:19 CST)
  • Norman Geist (Wed Jan 21 2015 - 03:42:46 CST)
  • Norman Geist (Wed Jan 21 2015 - 02:20:22 CST)
  • Daniel Möller (Mon Jan 19 2015 - 07:18:15 CST)
  • Norman Geist (Mon Jan 19 2015 - 02:41:23 CST)
• AW: the usage of measure bond
  • Sunyeping (Mon Jan 05 2015 - 01:31:39 CST)
  • Norman Geist (Mon Jan 05 2015 - 00:50:46 CST)
• AW: To the developers: Get current zoom value (scale)
  • Norman Geist (Fri Aug 08 2014 - 05:05:13 CDT)
• AW: To the developers: TCL implementation of autofit zoom
  • Norman Geist (Mon Aug 11 2014 - 05:04:29 CDT)
  • Norman Geist (Mon Aug 11 2014 - 00:24:13 CDT)
  • Norman Geist (Mon Aug 11 2014 - 00:22:42 CDT)
• AW: Transparency rendering by Tachyon
  • Norman Geist (Mon Oct 13 2014 - 09:03:37 CDT)
  • Norman Geist (Mon Oct 13 2014 - 01:52:28 CDT)
• AW: Unable to visualize my polymer chains generated using RIS theory using VMD properly
  • Norman Geist (Wed Mar 16 2016 - 04:56:34 CDT)
  • Norman Geist (Tue Mar 15 2016 - 02:53:21 CDT)
• AW: Userani.tcl script jumps frame after no play
  • Norman Geist (Thu Aug 16 2018 - 01:41:22 CDT)
• AW: veldcd file
  • Norman Geist (Thu Jan 05 2017 - 04:49:12 CST)
• AW: Visualize a SMILES string
  • Norman Geist (Tue Apr 29 2014 - 10:01:56 CDT)
• AW: Visualize temperature
  • Norman Geist (Mon Aug 21 2017 - 00:08:08 CDT)
• AW: VMD 3D movies rendering
  • Daniel Hornburg (Thu Aug 19 2010 - 03:23:43 CDT)
  • Daniel Hornburg (Wed Aug 18 2010 - 02:17:49 CDT)
  • Daniel Hornburg (Tue Aug 17 2010 - 10:50:30 CDT)
  • Daniel Hornburg (Tue Aug 17 2010 - 05:43:35 CDT)
• AW: vmd and proxy settings
  • Greipel.Joachim_at_mh-hannover.de (Wed Mar 02 2016 - 03:42:26 CST)
  • Greipel.Joachim_at_mh-hannover.de (Wed Mar 02 2016 - 01:21:53 CST)
• AW: VMD crash on large DCD files.
  • Norman Geist (Thu Jan 30 2014 - 02:17:24 CST)
• AW: VMD crashing when loading prmtop files
  • Norman Geist (Wed Dec 17 2014 - 04:03:32 CST)
• AW: VMD TkConsole command
  • Daniel Möller (Thu Jan 08 2015 - 14:14:11 CST)
  • Norman Geist (Thu Jan 08 2015 - 09:17:15 CST)
  • Norman Geist (Thu Jan 08 2015 - 03:00:37 CST)
• AW: VMD warnings
  • Norman Geist (Fri Oct 24 2014 - 05:05:16 CDT)
• AW: VMD with 3D TV
  • Norman Geist (Wed Dec 17 2014 - 10:34:14 CST)
  • Norman Geist (Mon Dec 15 2014 - 01:43:12 CST)
• AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • Norman Geist (Mon Dec 09 2013 - 01:25:59 CST)
• AW: vmd-I: Fatal Error: Unable to Open CHARMM Parameter File
  • Daniel Möller (Tue Feb 03 2015 - 04:02:56 CST)
• AW: volumetric maps
  • markus.mooslechner_at_orf.at (Fri Oct 03 2008 - 05:11:50 CDT)
• AW: water molecules amber force field
  • Daniel Möller (Thu Apr 12 2018 - 17:46:58 CDT)
• AW: WG: vmd and proxy settings
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 03 2016 - 01:12:02 CST)
• AW: WG: VMD mismatch between CUDA runtime and GPU driver
  • Greipel.Joachim_at_mh-hannover.de (Fri Jul 19 2013 - 01:04:54 CDT)
• AW: why vmd cannot load the dcd trajectory?
  • Norman Geist (Tue Jan 10 2017 - 07:20:23 CST)
  • sunyeping (Tue Jan 10 2017 - 04:47:42 CST)
  • Ashar Malik (Tue Jan 10 2017 - 04:18:44 CST)
  • Ashar Malik (Tue Jan 10 2017 - 04:30:36 CST)
  • sunyeping (Tue Jan 10 2017 - 04:25:41 CST)
  • sunyeping (Tue Jan 10 2017 - 03:03:47 CST)
  • Norman Geist (Tue Jan 10 2017 - 02:43:17 CST)
• AW: wrapper for VMD to read compressed .xz files
  • Norman Geist (Mon Feb 03 2014 - 01:01:49 CST)
  • Norman Geist (Sat Feb 01 2014 - 15:06:26 CST)
• AW: Wrapping problem
  • Norman Geist (Mon May 30 2016 - 00:51:46 CDT)
• AW: Writing DCD from modified coordinates
  • Norman Geist (Fri Mar 21 2014 - 02:51:25 CDT)
• AW: writing velocities from VMD
  • Norman Geist (Mon Apr 07 2014 - 01:56:05 CDT)
  • Norman Geist (Fri Apr 04 2014 - 02:44:48 CDT)
• AW: z-direction selection
  • Norman Geist (Mon Jun 18 2018 - 02:38:44 CDT)
• AW: Zoom-to-fit before rendering
  • Norman Geist (Fri Mar 03 2017 - 02:24:46 CST)
  • Norman Geist (Thu Mar 02 2017 - 07:19:40 CST)
• AW: zooming into a chosen atom
  • Norman Geist (Thu Jun 16 2016 - 04:39:19 CDT)
  • Norman Geist (Thu Jun 16 2016 - 02:53:57 CDT)
• Away from email until Sunday...
  • John Stone (Wed Sep 15 2004 - 17:48:55 CDT)
• Away from VMD-L/email until July 8th...
  • daniel aguayo (Fri Jun 20 2008 - 16:27:34 CDT)
  • Alexandre A. Vakhrouchev (Thu Jun 19 2008 - 21:09:17 CDT)
  • John Stone (Thu Jun 19 2008 - 19:50:06 CDT)
• Away until July 12, self-help encouraged!
  • John Stone (Thu Jun 28 2007 - 17:22:36 CDT)
• AWS for VMD and NAMD no longer working?
  • John Stone (Thu Dec 09 2021 - 23:40:31 CST)
  • Chapman, John O. (Wed Nov 10 2021 - 16:25:23 CST)
• Axes
  • Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
  • John Stone (Tue Aug 19 2008 - 00:54:31 CDT)
  • Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
• Axes are not rotated?
  • Olaf Lenz (Thu Jul 22 2004 - 10:50:06 CDT)
  • John Stone (Mon Jul 19 2004 - 10:22:44 CDT)
  • Olaf Lenz (Mon Jul 19 2004 - 10:12:29 CDT)
• Axes dilema
  • John Stone (Fri Aug 11 2006 - 22:27:58 CDT)
  • griadi_at_utalca.cl (Fri Aug 11 2006 - 18:11:07 CDT)
• B factor calculation
  • Aaron.Oakley_at_csiro.au (Tue Nov 04 2008 - 16:27:02 CST)
  • AyÅŸe Özlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
• B-factor Plot
  • Paul Hubbard (Mon Feb 28 2000 - 17:06:33 CST)
• B-factor plugin
  • Wang Yi (Fri Aug 10 2012 - 12:53:48 CDT)
  • JC Gumbart (Fri Aug 10 2012 - 12:48:17 CDT)
  • flavio seixas (Fri Aug 10 2012 - 09:17:57 CDT)
  • Wang Yi (Fri Aug 10 2012 - 09:26:39 CDT)
  • Axel Kohlmeyer (Thu Aug 09 2012 - 15:50:47 CDT)
  • Wang Yi (Thu Aug 09 2012 - 15:00:42 CDT)
  • flavio seixas (Thu Aug 09 2012 - 14:13:26 CDT)
• Babel and VMD
  • Neil Henson T-12 (Tue Mar 03 1998 - 12:12:27 CST)
  • aldo jongejan (Tue Mar 03 1998 - 11:05:07 CST)
• Babel and Windows
  • Storr, Mark (Tue May 21 2002 - 08:22:37 CDT)
• babel compilation error
  • John Stone (Fri Dec 09 2005 - 12:59:39 CST)
  • Eugen Leitl (Fri Dec 09 2005 - 11:30:24 CST)
  • John Stone (Fri Dec 09 2005 - 10:10:20 CST)
  • Bogdan Costescu (Fri Dec 09 2005 - 10:04:22 CST)
  • John Stone (Thu Dec 08 2005 - 14:30:13 CST)
  • Cojocaru,Vlad (Thu Dec 08 2005 - 14:26:38 CST)
• backbone dihedral angles over trajectory
  • Giovanni Bellesia (Fri Aug 08 2008 - 17:36:44 CDT)
  • Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
• Backbone representation of RNA
  • John Stone (Fri Aug 12 2005 - 10:55:56 CDT)
  • Peter Schellenberg (Fri Aug 12 2005 - 01:40:44 CDT)
• backbone selection failing
  • Ashar Malik (Fri Apr 22 2016 - 04:32:13 CDT)
  • Stefan Doerr (Fri Apr 22 2016 - 04:34:16 CDT)
  • Stefan Doerr (Fri Apr 22 2016 - 04:05:10 CDT)
  • Samuel Bowerman (Thu Apr 21 2016 - 13:45:53 CDT)
  • Ashar Malik (Thu Apr 21 2016 - 13:28:42 CDT)
  • Stefan Doerr (Thu Apr 21 2016 - 11:27:19 CDT)
• background color
  • Fateme Sadat Emami (Mon Jan 27 2014 - 11:08:58 CST)
  • Maxim Belkin (Mon Jan 27 2014 - 11:41:11 CST)
  • John Stone (Mon Jan 27 2014 - 11:33:17 CST)
• Background colour
  • Jérôme Hénin (Sun Nov 30 2003 - 03:39:16 CST)
  • Derek Ng (Sat Nov 29 2003 - 23:38:26 CST)
• Background gradient in image
  • Axel Kohlmeyer (Mon Nov 15 2010 - 16:48:25 CST)
  • quantrum75 (Mon Nov 15 2010 - 15:45:43 CST)
• Backspace and delete
  • John Stone (Thu Mar 06 2003 - 18:46:50 CST)
• Backspace not functionning in console
  • John Stone (Thu Sep 11 2003 - 10:04:29 CDT)
  • John Stone (Wed Sep 10 2003 - 10:07:34 CDT)
  • Patrick Ladam (Wed Sep 10 2003 - 07:07:05 CDT)
• bad angels
  • genie lfs (Mon Apr 24 2006 - 05:06:32 CDT)
• bad angels]
  • Peter Freddolino (Mon Apr 24 2006 - 10:15:42 CDT)
• Bad Length and GLXBadLargeRequest errors
  • Axel Kohlmeyer (Thu Dec 23 2010 - 04:01:03 CST)
  • Corenflos, Steven (Wed Dec 22 2010 - 15:57:58 CST)
• Bad performance of VMD
  • John Stone (Fri Dec 02 2005 - 13:03:20 CST)
  • Jernej Zidar (Wed Nov 30 2005 - 04:41:24 CST)
  • John Stone (Mon Nov 28 2005 - 11:16:13 CST)
  • Jernej Zidar (Wed Nov 23 2005 - 09:40:53 CST)
• bad resolution and too slow on mandrake 10.0
  • matteo.pennestri_at_virgilio.it (Sun May 29 2005 - 12:37:42 CDT)
  • John Stone (Fri May 27 2005 - 15:00:06 CDT)
  • Jorge Hernandez Fernandez (Fri May 27 2005 - 14:50:09 CDT)
  • Olga Kravchenko (Wed May 25 2005 - 05:00:28 CDT)
  • Cetin Baloglu (Wed May 25 2005 - 04:04:55 CDT)
  • matteo.pennestri_at_virgilio.it (Wed May 25 2005 - 02:00:01 CDT)
• bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit)
  • John Stone (Wed Jan 20 2010 - 14:12:07 CST)
  • Dong Luo (Wed Jan 20 2010 - 14:01:45 CST)
  • Dong Luo (Wed Jan 20 2010 - 13:48:09 CST)
  • John Stone (Wed Jan 20 2010 - 12:37:38 CST)
  • John Stone (Wed Jan 20 2010 - 12:24:16 CST)
  • Axel Kohlmeyer (Wed Jan 20 2010 - 11:42:57 CST)
  • Dong Luo (Wed Jan 20 2010 - 11:12:11 CST)
  • Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
  • John Stone (Wed Jan 20 2010 - 10:24:45 CST)
  • Axel Kohlmeyer (Fri Jan 15 2010 - 12:11:21 CST)
  • John Stone (Fri Jan 15 2010 - 12:01:17 CST)
  • Dong Luo (Fri Jan 15 2010 - 11:30:48 CST)
• bad window parameter
  • Axel Kohlmeyer (Tue May 10 2011 - 10:39:44 CDT)
  • Robert Wohlhueter (Tue May 10 2011 - 09:27:34 CDT)
• bad window parameter -- SOLVED
  • Robert Wohlhueter (Tue May 10 2011 - 10:16:48 CDT)
• bad_alloc error
  • Gustavo Gust (Wed Nov 11 2009 - 10:17:37 CST)
  • Axel Kohlmeyer (Wed Nov 11 2009 - 10:43:34 CST)
  • John Stone (Wed Nov 11 2009 - 10:12:12 CST)
  • Gustavo Gust (Wed Nov 11 2009 - 09:58:01 CST)
  • John Stone (Wed Nov 11 2009 - 09:20:20 CST)
  • Gustavo Gust (Wed Nov 11 2009 - 09:04:34 CST)
• Bader Charge Analysis
  • Ozan Dernek (Fri Aug 21 2015 - 10:05:18 CDT)
  • Axel Kohlmeyer (Fri Aug 21 2015 - 12:05:44 CDT)
• badwater script - help
  • John Stone (Thu Jul 26 2007 - 16:28:08 CDT)
  • Jim Pfaendtner (Thu Jul 26 2007 - 15:18:48 CDT)
• basal spacing
  • Hasnain Shabbir (Wed Jun 19 2019 - 13:25:20 CDT)
• base plane not being filled in for terminal adenines in ribbons/new ribbons
  • John Stone (Tue Jun 15 2004 - 14:38:30 CDT)
  • Pattanayek, Sabuj (Mon Jun 14 2004 - 13:30:18 CDT)
• bash calling multiple python scripts that open vmd pauses
  • Ryan Woltz (Sat Jan 21 2023 - 21:47:48 CST)
  • Ryan Woltz (Sat Jan 21 2023 - 17:26:02 CST)
  • Ashar Malik (Sat Jan 21 2023 - 05:36:52 CST)
  • Ryan Woltz (Sat Jan 21 2023 - 04:30:13 CST)
• bash scripts quits after few frames
  • Jérôme Hénin (Tue Nov 22 2011 - 06:32:43 CST)
  • Axel Kohlmeyer (Tue Nov 22 2011 - 06:20:24 CST)
  • Jorgen Simonsen (Tue Nov 22 2011 - 03:55:02 CST)
• Basic membrane plugin questions
  • John Stone (Tue Apr 19 2005 - 18:42:53 CDT)
  • Meyer, Douglas K \(UMC-Student\) (Fri Apr 15 2005 - 11:20:56 CDT)
• basic procedure for ABF-PMF calculation
  • Jérôme Hénin (Mon Nov 29 2021 - 06:30:58 CST)
  • Yogesh Sharma (Fri Nov 26 2021 - 11:53:01 CST)
• Basic question about improper
  • Wenhao Liu (Tue Jun 18 2013 - 18:29:38 CDT)
• Basic VMD questions...
  • Justin Gullingsrud (Sun Oct 10 2004 - 10:19:17 CDT)
  • lug2002_at_med.cornell.edu (Sat Oct 09 2004 - 00:51:07 CDT)
  • Justin Gullingsrud (Thu Oct 07 2004 - 22:02:22 CDT)
  • Axel Kohlmeyer (Sun Oct 10 2004 - 03:20:16 CDT)
  • Oleg V. Stroganov (Sat Oct 09 2004 - 12:21:35 CDT)
  • Luis Rosales (Fri Oct 08 2004 - 21:05:30 CDT)
  • Axel Kohlmeyer (Fri Oct 08 2004 - 02:17:34 CDT)
  • Luis Rosales (Thu Oct 07 2004 - 19:10:52 CDT)
• Batch image creation
  • Axel Kohlmeyer (Fri Nov 04 2011 - 18:07:41 CDT)
  • Juan Antonio Raygoza Garay (Fri Nov 04 2011 - 16:59:57 CDT)
• Batch mode on Mac OS 10.5.3
  • Benjamin Hall (Wed Jun 04 2008 - 08:26:23 CDT)
  • Robert Brunner (Tue Jun 03 2008 - 12:34:02 CDT)
  • Dan Wright (Tue Jun 03 2008 - 11:24:22 CDT)
  • John Stone (Tue Jun 03 2008 - 11:10:18 CDT)
  • Benjamin Hall (Tue Jun 03 2008 - 05:16:52 CDT)
• batchmode use of "labels" functions?
  • John Stone (Fri Feb 10 2006 - 12:50:40 CST)
  • Brian Bennion (Fri Feb 10 2006 - 11:59:32 CST)
• BB Trace
  • Rex Palmer (Thu Aug 26 2010 - 14:49:39 CDT)
• Be someone whom you have never been before with DrMaxMan
  • ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
• Be the largest man around
  • petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
• Beginner with cyclic peptide
  • Peter Freddolino (Tue Apr 29 2008 - 11:44:04 CDT)
  • Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
• Beginner's problem
  • Alexandr Isayev (Tue Nov 14 2006 - 12:01:36 CST)
  • John Young (Tue Nov 14 2006 - 11:20:01 CST)
• behavior of "mol addfile first/last" with non-integer frame numbers
  • John Stone (Fri Sep 28 2007 - 13:37:49 CDT)
  • Axel Kohlmeyer (Thu Sep 27 2007 - 19:35:40 CDT)
• Behavior of TachyonLOptiXInternal Renderer
  • John Stone (Fri Apr 14 2017 - 05:03:15 CDT)
  • John Stone (Fri Apr 14 2017 - 02:29:36 CDT)
  • Vermaas, Joshua (Thu Apr 13 2017 - 20:53:52 CDT)
• best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule
  • Axel Kohlmeyer (Tue Jun 28 2011 - 09:55:40 CDT)
  • Sara Biocomputation (Mon Jun 27 2011 - 10:44:48 CDT)
  • Sara Biocomputation (Mon Jun 27 2011 - 10:39:30 CDT)
• Best fit plane axis
  • Jayendra Balasubramanian (Fri Dec 08 2006 - 14:52:31 CST)
  • Amarda Shehu (Fri Dec 08 2006 - 14:21:19 CST)
  • Myunggi Yi (Fri Dec 08 2006 - 12:23:58 CST)
• Best hardware for 3d.
  • John Stone (Fri Mar 15 2002 - 10:06:09 CST)
• best method for showing metal nanoparticle and protein in vmd
  • Axel Kohlmeyer (Sat Jun 08 2013 - 12:48:45 CDT)
  • hamid mosaddeghi (Fri Jun 07 2013 - 04:24:15 CDT)
• Best VMD install for El Capitan OS X?
  • John Stone (Fri Nov 06 2015 - 09:53:56 CST)
  • Eiros Zamora, Juan (Fri Nov 06 2015 - 09:32:57 CST)
  • John Stone (Mon Nov 02 2015 - 10:35:29 CST)
  • Eiros Zamora, Juan (Mon Nov 02 2015 - 03:35:36 CST)
• Best way for model post processing?
  • Axel Kohlmeyer (Mon Oct 18 2010 - 12:11:55 CDT)
  • Steve Jensen (Sun Oct 17 2010 - 23:22:14 CDT)
• Best way to bond peptides
  • Sujata Sovani (Wed Sep 01 2010 - 18:30:08 CDT)
• Best way to extend molfile plugin
  • Axel Kohlmeyer (Tue Jul 07 2020 - 08:15:37 CDT)
  • Peter Schmidtke (Tue Jul 07 2020 - 07:28:19 CDT)
• Best way to join two PDB fragments by a peptide bond
  • Sujata Sovani (Wed Sep 01 2010 - 17:36:46 CDT)
• beta barrel structure generation
  • Geist, Norman (Sat Dec 22 2018 - 02:06:44 CST)
  • Ashar Malik (Fri Dec 21 2018 - 21:45:16 CST)
  • Prabir Khatua (Fri Dec 21 2018 - 16:41:42 CST)
• Beta color of atoms
  • John Stone (Fri Nov 08 2002 - 11:38:47 CST)
  • #WONG CHEE HOW# (Thu Nov 07 2002 - 19:57:26 CST)
• beta column format in PDB
  • Axel Kohlmeyer (Wed Dec 24 2008 - 15:53:27 CST)
  • BIN ZHANG (Wed Dec 24 2008 - 14:57:47 CST)
  • Axel Kohlmeyer (Wed Dec 24 2008 - 14:33:53 CST)
  • BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
• beta column in a multiseq sequences alignment
  • Pablo Villalobos Navarro (Tue Aug 21 2012 - 18:21:07 CDT)
• Beta testers wanted for modified AutoPSF
  • Tristan Croll (Sun Feb 08 2015 - 01:57:33 CST)
• beta version
  • Sanjeev B.S. (Tue Nov 26 2002 - 01:35:28 CST)
• BFEE
  • Francesco Coppola (Wed Feb 08 2023 - 11:33:42 CST)
• BFEE calculations for protein-protein complexes
  • Deepshikha Ghosh 19310001 (Mon Dec 12 2022 - 04:23:41 CST)
• BFEE plugin error: 'measure center: bad weight sum would cause divide by zero'
  • Jovana Stelkic (Thu Apr 22 2021 - 13:34:48 CDT)
  • Axel Kohlmeyer (Thu Apr 22 2021 - 12:59:51 CDT)
  • Pawel Kedzierski (Thu Apr 22 2021 - 10:43:27 CDT)
  • Pawel Kedzierski (Thu Apr 22 2021 - 08:42:25 CDT)
  • Jovana Stelkic (Thu Apr 22 2021 - 01:25:22 CDT)
• Big DCD file
  • flavio seixas (Tue Sep 25 2012 - 07:37:40 CDT)
• Big DCD file help
  • flavio seixas (Tue Sep 25 2012 - 13:13:00 CDT)
  • flavio seixas (Tue Sep 25 2012 - 12:47:41 CDT)
  • Axel Kohlmeyer (Tue Sep 25 2012 - 12:54:09 CDT)
  • flavio seixas (Tue Sep 25 2012 - 11:56:05 CDT)
  • Bennion, Brian (Tue Sep 25 2012 - 11:43:52 CDT)
  • Axel Kohlmeyer (Tue Sep 25 2012 - 11:10:26 CDT)
  • flavio seixas (Tue Sep 25 2012 - 10:16:29 CDT)
• Big trr trajectory
  • John Stone (Thu Mar 23 2006 - 10:28:14 CST)
  • Anthony Cruz (Thu Mar 23 2006 - 13:27:17 CST)
• bigdcd
  • Ioana Cozmuta (Wed Nov 05 2003 - 18:29:25 CST)
  • Brian Bennion (Wed Nov 05 2003 - 17:52:38 CST)
  • Ioana Cozmuta (Wed Nov 05 2003 - 17:00:40 CST)
  • Ioana Cozmuta (Tue Nov 04 2003 - 19:52:51 CST)
• bigdcd + salt-bridge analysis
  • John Stone (Sun Sep 19 2010 - 19:39:16 CDT)
  • Murpholino Peligro (Thu Sep 16 2010 - 15:31:58 CDT)
• Bigdcd - get coordinates from file
  • Peter Freddolino (Sun Nov 05 2006 - 07:47:42 CST)
  • Per Jr. Greisen (Sun Nov 05 2006 - 05:56:34 CST)
• Bigdcd and Namdenergy batch problem
  • John Stone (Thu Feb 25 2010 - 16:46:08 CST)
  • Andrea Carotti (Wed Feb 24 2010 - 10:21:34 CST)
• bigdcd for distance problems
  • Francesco Pietra (Wed Jun 03 2015 - 16:04:13 CDT)
  • Josh Vermaas (Wed Jun 03 2015 - 14:03:58 CDT)
  • Francesco Pietra (Wed Jun 03 2015 - 12:08:44 CDT)
• bigdcd v2.0 testers needed...
  • Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
• bigdcd v3 available. testers needed.
  • Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
• bilayer thickness in simulation of POPC membranes
  • Olaf Lenz (Sun Aug 12 2007 - 04:00:41 CDT)
  • Cojocaru,Vlad (Sun Aug 12 2007 - 02:54:44 CDT)
  • Axel Kohlmeyer (Sat Aug 11 2007 - 11:33:51 CDT)
  • Cojocaru,Vlad (Sat Aug 11 2007 - 10:08:28 CDT)
  • Vlad Cojocaru (Fri Aug 10 2007 - 10:56:41 CDT)
• BIMac2019
  • Dusan Racko (Thu Feb 28 2019 - 08:39:19 CST)
• Binary request
  • Axel Kohlmeyer (Fri Jan 07 2011 - 08:15:18 CST)
  • Axel Kohlmeyer (Fri Jan 07 2011 - 09:01:48 CST)
  • Nima Nouri (Fri Jan 07 2011 - 04:19:13 CST)
• Binary VMD buid for Linux, text mode only
  • John Stone (Wed Mar 03 2010 - 17:09:42 CST)
  • Benjamin Bouvier (Wed Mar 03 2010 - 09:26:20 CST)
• Binding affinity simulation of a mutation structure.
  • João Ribeiro KS (Sun Feb 12 2017 - 23:32:52 CST)
  • jrhau lung (Sun Feb 12 2017 - 19:14:28 CST)
• Binding free energy calculations
  • varun dewaker (Sat Mar 24 2018 - 08:12:17 CDT)
• Binding site similarity
  • Ban Arn (Mon Dec 05 2011 - 09:51:55 CST)
• binning data for each frame and coordinate
  • Axel Kohlmeyer (Wed Oct 12 2005 - 13:34:37 CDT)
  • syma (Wed Oct 12 2005 - 04:35:45 CDT)
• Bio-Image summer school in Paris this year
  • Marc Baaden (Wed Mar 16 2005 - 05:45:47 CST)
• BioCoRE Release: New Features
  • Robert Brunner (Mon Dec 16 2002 - 17:04:02 CST)
• Biometric Case Study Presentations Available (no charge), data mining and predictive modeling
  • Lisa Solomon (Mon Jul 10 2006 - 12:22:37 CDT)
• Biomolecular Simulations Meeting Bordeaux, 2&3 Sept. 2005
  • Biomolecular Simulations Congress 2005 (Tue Mar 22 2005 - 08:19:24 CST)
• Black & white VMD in CAVE?
  • John Stone (Thu Mar 18 2004 - 11:02:10 CST)
  • Jeroen Akershoek (Thu Mar 18 2004 - 00:28:34 CST)
• Black screen OPTIX interactive rendering
  • John Stone (Wed Jun 10 2020 - 09:57:06 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 08:20:49 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 05:22:39 CDT)
• blank output
  • John Stone (Mon Nov 07 2011 - 12:43:57 CST)
  • sarah k (Sun Nov 06 2011 - 09:34:39 CST)
• Blank thumbnails and non-working snapshots
  • Christopher McLean (Thu Feb 11 2010 - 03:18:29 CST)
  • John Stone (Tue Feb 09 2010 - 10:07:31 CST)
  • John Stone (Tue Feb 09 2010 - 09:44:00 CST)
  • John Stone (Tue Feb 09 2010 - 09:29:32 CST)
  • Christopher McLean (Tue Feb 09 2010 - 09:04:06 CST)
  • Axel Kohlmeyer (Tue Feb 09 2010 - 08:24:14 CST)
  • John Stone (Tue Feb 09 2010 - 08:12:37 CST)
  • Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
  • Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
  • Christopher McLean (Mon Feb 08 2010 - 09:55:13 CST)
• BMP snapshot
  • John Stone (Thu May 07 2009 - 14:24:57 CDT)
  • Eric H. Lee (Thu May 07 2009 - 14:26:24 CDT)
  • Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
• BN nanostructure builder
  • Upamanyu Ray (Thu Nov 14 2013 - 15:54:42 CST)
• Body
  • Axel Kohlmeyer (Mon Mar 06 2017 - 12:10:52 CST)
  • elene shopova (Mon Mar 06 2017 - 11:18:40 CST)
• Bond angle distribution
  • Wang Yi (Tue Jun 19 2012 - 15:13:48 CDT)
  • Prof. Eddie (Tue Jun 19 2012 - 13:49:33 CDT)
• Bond between two hydrogen atoms
  • Axel Kohlmeyer (Tue Jun 28 2011 - 12:56:11 CDT)
  • Debasis Sengupta (Tue Jun 28 2011 - 12:23:05 CDT)
• Bond Colors
  • Axel Kohlmeyer (Thu Oct 14 2010 - 11:58:09 CDT)
  • John Stone (Thu Oct 14 2010 - 11:54:04 CDT)
  • Brooke Dallas (Thu Oct 14 2010 - 11:37:10 CDT)
  • Patrick Burney (Wed Oct 13 2010 - 14:41:43 CDT)
  • Axel Kohlmeyer (Wed Oct 13 2010 - 12:38:18 CDT)
  • Eduard Schreiner (Wed Oct 13 2010 - 12:14:46 CDT)
  • Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
  • Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
  • Brooke Dallas (Wed Oct 13 2010 - 08:46:36 CDT)
• bond connectivity for different frames
  • John Stone (Tue Mar 11 2003 - 10:26:52 CST)
  • Lars Bruno Hansen (Tue Mar 11 2003 - 10:16:38 CST)
• bond connectivity not displayed in VMD
  • Axel Kohlmeyer (Wed Oct 21 2009 - 12:58:15 CDT)
  • Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
• BOND CP2 - CT2 IN PARAMETER FILES
  • bora erdemli (Thu Oct 28 2004 - 16:42:09 CDT)
• bond cutoff
  • John Stone (Wed Mar 21 2012 - 11:29:49 CDT)
  • Zhuyi Xue (Mon Mar 19 2012 - 08:45:34 CDT)
• Bond display and Periodic Boxes
  • John Stone (Mon Apr 26 2004 - 17:51:03 CDT)
  • Jim Shepherd (Mon Apr 26 2004 - 14:19:02 CDT)
• BOND distance
  • Aashish Bhatt (Sun Mar 31 2019 - 04:55:13 CDT)
  • Karteek Kumar (Sat Mar 30 2019 - 22:14:27 CDT)
  • Ernesto Aleksei Delgado Hurtado (Sat Mar 30 2019 - 21:46:36 CDT)
  • Giacomo Fiorin (Sat Mar 30 2019 - 18:13:26 CDT)
  • Aashish Bhatt (Sat Mar 30 2019 - 06:23:35 CDT)
• bond distance across different proteins
  • Stern, Julie (Tue Dec 07 2004 - 14:56:59 CST)
• Bond drawing questino
  • John Stone (Fri Oct 24 2003 - 18:51:59 CDT)
  • Paul Fons (Tue Oct 21 2003 - 01:52:22 CDT)
• Bond error
  • Axel Kohlmeyer (Sun Aug 04 2013 - 23:20:35 CDT)
  • Benjamin Cowen (Sun Aug 04 2013 - 18:07:39 CDT)
  • Axel Kohlmeyer (Sun Aug 04 2013 - 03:21:21 CDT)
  • Benjamin Cowen (Sat Aug 03 2013 - 16:07:17 CDT)
  • Axel Kohlmeyer (Sat Aug 03 2013 - 15:03:40 CDT)
  • Benjamin Cowen (Fri Aug 02 2013 - 15:25:37 CDT)
• Bond in pbc condition
  • John Stone (Fri Aug 28 2009 - 10:22:06 CDT)
  • Olaf Lenz (Fri Aug 28 2009 - 04:06:39 CDT)
  • Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
• Bond information
  • Justin Gullingsrud (Fri Aug 04 2000 - 12:11:21 CDT)
  • Timm Essigke (Fri Aug 04 2000 - 11:09:44 CDT)
• bond information in psf file
  • Axel Kohlmeyer (Sat Jun 24 2006 - 22:51:13 CDT)
  • Xu (Sat Jun 24 2006 - 20:51:27 CDT)
• bond Label position
  • Parvez Mh (Mon Jun 06 2016 - 12:21:00 CDT)
• Bond Labels - Issue with Rendering
  • Peter Murphy (Mon Jun 03 2013 - 12:12:04 CDT)
• bond length
  • Justin Gullingsrud (Mon Jan 28 2002 - 11:32:36 CST)
  • Vlad Cojocaru (Mon Jan 28 2002 - 05:26:27 CST)
• Bond Length and Bond Angle as a Function of Steps
  • ehsan shahini (Tue Jul 30 2019 - 02:29:41 CDT)
• bond length definition
  • John Stone (Wed Apr 25 2001 - 13:39:35 CDT)
  • Aitor Gonzalez (Wed Apr 25 2001 - 04:41:32 CDT)
  • Mauricio Carrillo Tripp (Tue Apr 24 2001 - 13:40:17 CDT)
• Bond Lengths
  • John Stone (Fri Jun 20 2003 - 09:55:54 CDT)
  • Timothy W Suen (Fri Jun 20 2003 - 08:54:25 CDT)
• Bond lengths from PDB and PSF
  • Axel Kohlmeyer (Mon May 12 2008 - 17:32:55 CDT)
  • Andrew Huang (Mon May 12 2008 - 16:36:18 CDT)
• bond missimg
  • Eduard Schreiner (Mon Apr 25 2005 - 08:58:44 CDT)
  • Axel Kohlmeyer (Mon Apr 25 2005 - 08:47:20 CDT)
  • haider abbas (Mon Apr 25 2005 - 05:25:19 CDT)
• Bond Optimization FFTK error
  • Mayne, Christopher G (Fri Feb 26 2016 - 11:58:10 CST)
  • Soumya Lipsa Rath (Thu Feb 18 2016 - 18:18:04 CST)
• Bond order cut-off value
  • Sanjib Chowdhury (Fri Jan 17 2014 - 13:01:42 CST)
  • Axel Kohlmeyer (Fri Jan 17 2014 - 11:59:07 CST)
  • Sanjib Chowdhury (Fri Jan 17 2014 - 11:16:41 CST)
  • John Stone (Fri Jan 17 2014 - 11:06:26 CST)
  • Axel Kohlmeyer (Thu Jan 16 2014 - 19:35:23 CST)
  • Sanjib Chowdhury (Thu Jan 16 2014 - 16:53:54 CST)
  • John Stone (Thu Jan 16 2014 - 17:01:41 CST)
• Bond representation of coarse grained molecules
  • Sunjoo Lee (Wed Oct 07 2009 - 12:17:12 CDT)
  • Axel Kohlmeyer (Wed Oct 07 2009 - 09:39:42 CDT)
  • Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
  • Axel Kohlmeyer (Sat Sep 05 2009 - 14:45:59 CDT)
  • John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
  • BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
• bond updating in VMD
  • Albert (Sat Aug 19 2017 - 04:11:22 CDT)
  • stefdoerr_at_gmail.com (Sat Aug 19 2017 - 04:41:54 CDT)
  • Jana, Suvamay (Sat Aug 19 2017 - 04:00:40 CDT)
  • Ashar Malik (Sat Aug 19 2017 - 01:27:26 CDT)
  • Albert (Sat Aug 19 2017 - 00:20:27 CDT)
• Bond/angle optimization using FFTK
  • Minh Ho (Thu Oct 08 2020 - 16:39:46 CDT)
• bonding across periodic boundary
  • Jim Phillips (Tue Apr 12 2005 - 13:02:10 CDT)
  • Glenn Johnson (Tue Apr 12 2005 - 12:14:53 CDT)
• bonding across periodic walls
  • Kevin Wittkowski (Fri Jun 14 2024 - 02:43:55 CDT)
  • Giacomo Fiorin (Thu Jun 13 2024 - 16:37:32 CDT)
  • Kevin Wittkowski (Thu Jun 13 2024 - 14:34:08 CDT)
• Bonding energies between two atom selections
  • Ashar Malik (Tue Feb 17 2015 - 05:56:18 CST)
  • Viswanath Pasumarthi (Tue Feb 17 2015 - 05:12:56 CST)
• Bondlength information!
  • John Stone (Wed Aug 06 2003 - 11:04:57 CDT)
  • Ramesh K. Sistla (Wed Aug 06 2003 - 02:54:34 CDT)
• Bondlist limit
  • Axel Kohlmeyer (Wed Jun 15 2016 - 14:39:52 CDT)
  • Ivan Moncayo (Wed Jun 15 2016 - 12:05:16 CDT)
  • Axel Kohlmeyer (Thu May 19 2016 - 12:35:29 CDT)
  • Ivan Moncayo (Thu May 19 2016 - 11:44:24 CDT)
• bonds across periodic boundaries
  • John Stone (Tue Oct 16 2007 - 09:22:46 CDT)
  • Barry Bickmore (Tue Oct 16 2007 - 08:53:09 CDT)
• Bonds appearing as elongated lines
  • Josh Vermaas (Thu Sep 17 2015 - 09:32:23 CDT)
  • conor parks (Wed Sep 16 2015 - 11:59:14 CDT)
  • Sourav Ray (Wed Sep 16 2015 - 04:34:43 CDT)
• bonds forming during simulation
  • John Stone (Mon Jun 26 2006 - 14:48:11 CDT)
  • Sandeep Prakash (Mon Jun 26 2006 - 12:59:50 CDT)
• bonds in .psf file
  • Axel Kohlmeyer (Thu May 21 2009 - 12:48:40 CDT)
  • KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
• bonds in graphical representation
  • John Stone (Tue Jul 23 2002 - 22:10:19 CDT)
  • Marcela Madrid (Sat Jul 20 2002 - 15:20:08 CDT)
• bonds not created as desired
  • Akemi Matsuno-Yagi (Tue Jun 09 2009 - 15:09:25 CDT)
  • John Stone (Tue Jun 09 2009 - 14:55:44 CDT)
  • Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
• bondsrecalc question
  • Axel Kohlmeyer (Fri Mar 30 2012 - 12:46:52 CDT)
  • Denis Davydov (Fri Mar 30 2012 - 11:10:14 CDT)
• Boolean operators and the new atomsel type
  • Axel Kohlmeyer (Wed Feb 10 2010 - 14:35:37 CST)
  • Daniel Terry (Wed Feb 10 2010 - 12:30:21 CST)
• boolean operators in graphics
  • John Stone (Thu Mar 14 2002 - 22:39:09 CST)
  • Andrew Dalke (Thu Mar 14 2002 - 22:32:38 CST)
  • Sanjeev B.S. (Thu Mar 14 2002 - 22:11:11 CST)
• Boron nitride preparation
  • Axel Kohlmeyer (Sat Jun 21 2014 - 09:26:48 CDT)
  • khannan krishna (Sat Jun 21 2014 - 08:50:17 CDT)
  • khannan krishna (Sat Jun 21 2014 - 04:28:29 CDT)
  • Axel Kohlmeyer (Sat Jun 21 2014 - 03:31:23 CDT)
  • khannan krishna (Sat Jun 21 2014 - 01:08:27 CDT)
• boubt about consistency of measures
  • John Stone (Mon Mar 27 2006 - 21:37:55 CST)
  • John Stone (Mon Mar 27 2006 - 00:47:16 CST)
  • Sergio Anis (Thu Mar 23 2006 - 08:19:52 CST)
• Bounced VMD-L postings...
  • Maxim Belkin (Tue Feb 18 2014 - 13:26:22 CST)
  • John Stone (Tue Feb 18 2014 - 13:17:04 CST)
• Boundry Dimensions for Solvation
  • Axel Kohlmeyer (Thu Jul 26 2007 - 11:41:04 CDT)
  • Vijaya Brahma (Thu Jul 26 2007 - 04:25:03 CDT)
  • Vijaya Brahma (Wed Jul 25 2007 - 23:56:13 CDT)
• Box boundaries displaying
  • Ramin Ekhteiari (Tue Jul 02 2013 - 02:14:36 CDT)
  • Olaf Lenz (Mon Jul 01 2013 - 12:46:00 CDT)
  • Axel Kohlmeyer (Mon Jul 01 2013 - 11:08:23 CDT)
  • Michele Formica (Mon Jul 01 2013 - 10:40:03 CDT)
  • Michele Formica (Mon Jul 01 2013 - 10:36:57 CDT)
  • Michele Formica (Mon Jul 01 2013 - 10:21:54 CDT)
• Box dimensions
  • John Stone (Wed Jun 20 2007 - 10:55:34 CDT)
  • Jennie Thomas (Tue Jun 19 2007 - 18:28:12 CDT)
  • John Stone (Tue Jun 19 2007 - 18:03:34 CDT)
  • Jennie Thomas (Tue Jun 19 2007 - 17:59:53 CDT)
• box information
  • John Stone (Tue Apr 04 2006 - 17:27:17 CDT)
  • dimka (Tue Apr 04 2006 - 17:18:30 CDT)
• box information amber crdbox
  • Myunggi Yi (Fri Jan 05 2007 - 10:44:42 CST)
  • John Stone (Wed Jan 03 2007 - 10:23:46 CST)
  • Myunggi Yi (Fri Dec 22 2006 - 17:24:19 CST)
• Box of non-polar solvent
  • Brian Bennion (Fri Jul 16 2004 - 13:35:28 CDT)
  • Brian Bennion (Fri Jul 16 2004 - 13:13:01 CDT)
  • Axel Kohlmeyer (Fri Jul 16 2004 - 11:59:45 CDT)
  • John Stone (Fri Jul 16 2004 - 10:36:28 CDT)
  • Raymond C. Fort Jr. (Fri Jul 16 2004 - 09:17:23 CDT)
• box vectores in .trr
  • Matt Watkins (Sat Apr 09 2011 - 17:47:06 CDT)
  • Axel Kohlmeyer (Sat Apr 09 2011 - 15:17:23 CDT)
  • leila karami (Sat Apr 09 2011 - 08:44:04 CDT)
• BPS Meeting @ Baltimore
  • L. Michel Espinoza-Fonseca (Thu Mar 08 2007 - 09:40:16 CST)
  • Peter Freddolino (Thu Mar 08 2007 - 07:07:25 CST)
  • bora erdemli (Mon Mar 05 2007 - 19:16:40 CST)
• breaking a big dcd file
  • John Stone (Wed Jan 11 2006 - 16:23:26 CST)
  • Kim Gunnerson (Wed Jan 11 2006 - 13:41:49 CST)
  • Axel Kohlmeyer (Tue Dec 20 2005 - 18:58:28 CST)
  • Nitin Bhardwaj (Tue Dec 20 2005 - 16:48:08 CST)
  • John Stone (Tue Dec 20 2005 - 16:28:31 CST)
  • Nitin Bhardwaj (Tue Dec 20 2005 - 16:09:40 CST)
• Breaking a trajectory into separate files with tcl
  • Patrick Redmill (Mon Oct 05 2009 - 05:41:39 CDT)
  • Axel Kohlmeyer (Mon Oct 05 2009 - 01:41:49 CDT)
  • Schreiner Eduard (Sun Oct 04 2009 - 22:06:21 CDT)
  • Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
• Breaking Bonds in VMD
  • John Stone (Mon Jan 26 2009 - 15:55:29 CST)
  • Axel Kohlmeyer (Tue Jan 20 2009 - 17:21:16 CST)
  • John Stone (Tue Jan 20 2009 - 17:26:01 CST)
  • nicholas lee (Tue Jan 20 2009 - 15:01:16 CST)
  • nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
  • John Stone (Tue Jan 20 2009 - 10:47:17 CST)
• breaking the DCD file
  • Peter Freddolino (Sun Apr 16 2006 - 17:23:42 CDT)
  • John Stone (Sun Apr 16 2006 - 17:12:32 CDT)
  • Rima Chaudhuri (Sun Apr 16 2006 - 16:01:52 CDT)
• breaking the last bond when loading
  • John Stone (Tue Nov 26 2002 - 11:06:20 CST)
  • John Stone (Tue Nov 26 2002 - 09:34:35 CST)
  • Vlad Cojocaru (Tue Nov 26 2002 - 07:24:59 CST)
• bridging_waters.tcl error and usage
  • Justin Gullingsrud (Mon Nov 08 2004 - 13:04:00 CST)
  • Justin Gullingsrud (Mon Nov 08 2004 - 12:51:05 CST)
  • pl (Mon Nov 08 2004 - 05:18:21 CST)
• bring z-axis along a new vector
  • Ajasja LjubetiÄ� (Wed Feb 16 2011 - 03:00:01 CST)
  • dhacademic (Tue Feb 15 2011 - 14:39:04 CST)
• Broken bonds in trajectory due to pbc
  • Jennifer Williams (Wed Dec 09 2009 - 06:39:48 CST)
  • Olaf Lenz (Wed Dec 09 2009 - 04:14:34 CST)
  • Olaf Lenz (Wed Dec 09 2009 - 04:04:29 CST)
  • Axel Kohlmeyer (Tue Dec 08 2009 - 16:32:01 CST)
  • Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
  • Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
  • Jennifer Williams (Tue Dec 08 2009 - 05:41:07 CST)
• Broken link to MacKerell parameterization tutorial
  • Jim Parker (Fri Mar 21 2014 - 06:28:03 CDT)
  • JC Gumbart (Thu Mar 20 2014 - 20:12:22 CDT)
  • John Stone (Thu Mar 20 2014 - 15:22:11 CDT)
  • Jim Parker (Thu Mar 20 2014 - 14:26:40 CDT)
• Broken tube drawing method?
  • Axel Kohlmeyer (Thu Jul 05 2007 - 09:24:39 CDT)
  • Claw Isthelaw (Thu Jul 05 2007 - 00:17:37 CDT)
• Buffer Overflow in "label add" in VMD
  • Christopher MacDermaid (Wed Sep 18 2013 - 10:19:26 CDT)
• Bug fixed in volmap
  • Giacomo Fiorin (Thu Jan 24 2019 - 21:30:23 CST)
• Bug in 'source' command or in for loop?
  • John Stone (Fri Sep 16 2011 - 14:03:38 CDT)
  • dwds gerge (Tue Sep 13 2011 - 19:37:08 CDT)
  • John Stone (Tue Sep 13 2011 - 13:52:43 CDT)
  • dwds gerge (Tue Sep 13 2011 - 12:06:10 CDT)
• Bug in AutoIMD
  • John Stone (Thu Dec 09 2010 - 16:42:53 CST)
  • Tristan Croll (Sun Dec 05 2010 - 21:44:48 CST)
  • Tristan Croll (Sun Dec 05 2010 - 19:42:50 CST)
• bug in comments interpretation of vmd
  • John Stone (Wed Nov 26 2008 - 11:13:49 CST)
• bug in Hbond Option
  • Axel Kohlmeyer (Mon Sep 19 2011 - 06:51:38 CDT)
  • hamid mosaddeghi (Mon Sep 19 2011 - 00:37:41 CDT)
• bug in membrane plugin
  • JC Gumbart (Wed May 17 2006 - 14:21:55 CDT)
  • Peter Freddolino (Wed May 17 2006 - 14:14:56 CDT)
  • John Stone (Wed May 17 2006 - 13:59:01 CDT)
  • Ting Wang (Wed May 17 2006 - 13:52:21 CDT)
  • Axel Kohlmeyer (Mon May 15 2006 - 13:44:00 CDT)
  • John Stone (Mon May 15 2006 - 12:33:29 CDT)
  • Ting Wang (Thu May 11 2006 - 13:47:11 CDT)
• Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64)
  • Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
• bug in the g(r) evaluation?
  • cipitaua_at_gmail.com (Wed Apr 23 2008 - 07:50:12 CDT)
  • Axel Kohlmeyer (Tue Apr 22 2008 - 14:32:07 CDT)
  • cipitaua_at_gmail.com (Tue Apr 22 2008 - 11:06:14 CDT)
  • Axel Kohlmeyer (Tue Apr 22 2008 - 10:10:35 CDT)
  • cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
• Bug in the tcl script
  • John Stone (Thu Feb 15 2007 - 22:44:32 CST)
  • greddy1_at_umd.edu (Tue Feb 13 2007 - 13:18:58 CST)
  • greddy1_at_umd.edu (Fri Feb 09 2007 - 19:51:24 CST)
• Bug in VMD 1.9.3?
  • Arham Amouie (Wed Apr 26 2017 - 11:17:55 CDT)
  • Arham Amouie (Wed Apr 26 2017 - 10:37:58 CDT)
  • John Stone (Wed Apr 26 2017 - 10:52:03 CDT)
  • John Stone (Wed Apr 26 2017 - 10:03:28 CDT)
  • Arham Amouie (Wed Apr 26 2017 - 07:07:20 CDT)
• BUG in VMD dx reader plugin
  • Axel Kohlmeyer (Thu Aug 01 2013 - 05:05:03 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 05:18:59 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 05:06:09 CDT)
  • Norman Geist (Thu Aug 01 2013 - 03:43:07 CDT)
• Bug in VMD main?
  • Ahmet Bakan (Sat Mar 03 2012 - 12:25:05 CST)
  • John Stone (Sat Mar 03 2012 - 12:37:43 CST)
• Bug in VMD-1.6 (linux, GL)
  • John Stone (Fri Mar 09 2001 - 00:25:26 CST)
  • Timm Essigke (Mon Mar 05 2001 - 16:21:53 CST)
• Bug in VMD-1.8.7 multiseq functionality
  • genie lfs (Wed Jun 02 2010 - 04:54:48 CDT)
• Bug in VMD?
  • John Stone (Thu Mar 03 2011 - 13:38:58 CST)
  • Sujata Sovani (Thu Mar 03 2011 - 12:15:16 CST)
• bug in xsfplugin [patch included]
  • John Stone (Thu Apr 11 2013 - 12:08:32 CDT)
  • Axel Kohlmeyer (Thu Apr 11 2013 - 11:59:11 CDT)
  • Roberto Guerra (Thu Apr 11 2013 - 11:50:36 CDT)
  • Axel Kohlmeyer (Thu Apr 11 2013 - 08:18:59 CDT)
  • John Stone (Wed Apr 03 2013 - 15:56:28 CDT)
  • Roberto Guerra (Sat Mar 30 2013 - 19:55:43 CDT)
• bug of VMD
  • John Stone (Thu Jul 12 2012 - 10:37:18 CDT)
  • Albert (Fri Jun 29 2012 - 03:40:15 CDT)
• BUG Report -> Draw multiple frames
  • John Stone (Fri Nov 08 2013 - 16:58:23 CST)
  • Tristan Croll (Sun Oct 13 2013 - 18:53:22 CDT)
  • John Stone (Fri Oct 11 2013 - 08:34:49 CDT)
  • Norman Geist (Fri Oct 11 2013 - 02:41:25 CDT)
• Bug report for NAMDgui plugin in VMD (1.9.4 alpha 8)
  • John Stone (Wed Oct 11 2017 - 09:57:26 CDT)
  • Pawel Kedzierski (Wed Oct 11 2017 - 08:07:35 CDT)
  • Pawel Kedzierski (Wed Oct 11 2017 - 04:10:20 CDT)
• bug report in VMD 1.8.5
  • Leonardo Trabuco (Wed Feb 28 2007 - 14:15:11 CST)
  • Nichols A. Romero (Wed Feb 28 2007 - 14:10:47 CST)
  • John Stone (Tue Feb 27 2007 - 12:48:46 CST)
  • Jerome Henin (Mon Feb 26 2007 - 19:32:29 CST)
  • Axel Kohlmeyer (Mon Feb 26 2007 - 17:26:38 CST)
  • Nichols A. Romero (Mon Feb 26 2007 - 17:03:54 CST)
  • John Stone (Mon Feb 26 2007 - 16:41:14 CST)
  • Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
  • Nichols A. Romero (Mon Feb 26 2007 - 16:24:53 CST)
• BUG REPORT: Malfunctioning of VMD with Yosemite/ Follow up
  • Tianhua Feng (Fri Jul 17 2015 - 16:45:38 CDT)
  • Yasaman Ghadarghadr (Thu Jul 16 2015 - 13:08:30 CDT)
  • John Stone (Thu Jul 16 2015 - 09:57:33 CDT)
  • Yasaman Ghadarghadr (Wed Jul 15 2015 - 14:14:31 CDT)
• BUG REPORT: Malfunctioning of VMD with Yosemite?
  • John Stone (Fri Sep 05 2014 - 10:05:28 CDT)
  • Davide Mercadante (Thu Sep 04 2014 - 17:32:21 CDT)
  • John Stone (Thu Sep 04 2014 - 09:53:43 CDT)
  • Axel Kohlmeyer (Thu Sep 04 2014 - 07:45:04 CDT)
  • Davide Mercadante (Thu Sep 04 2014 - 07:08:57 CDT)
• bug when starting VMD on MACOS ARM
  • Maud Jusot (Thu Feb 22 2024 - 11:12:16 CST)
  • Isralewitz, Barry (Thu Feb 22 2024 - 09:45:04 CST)
  • Maud Jusot (Thu Feb 22 2024 - 04:50:26 CST)
  • Maud Jusot (Thu Feb 22 2024 - 04:32:55 CST)
  • Isralewitz, Barry (Wed Feb 21 2024 - 12:06:57 CST)
  • Maud Jusot (Wed Feb 21 2024 - 08:24:02 CST)
• Bug with FEP?
  • Brian Radak (Tue Apr 17 2018 - 09:42:46 CDT)
  • Francesco Pietra (Tue Apr 17 2018 - 00:05:38 CDT)
  • Brian Radak (Mon Apr 16 2018 - 11:31:45 CDT)
  • Francesco Pietra (Sun Apr 15 2018 - 02:48:10 CDT)
• BUG with MODEL card in PDB file
  • John Stone (Mon Sep 20 2004 - 16:02:12 CDT)
  • John Stone (Mon Sep 20 2004 - 15:39:29 CDT)
  • Nicholson, James D Mr ARO (Mon Sep 20 2004 - 15:34:41 CDT)
• BUG(s): vmd-1.9.2b
  • John Stone (Thu Oct 30 2014 - 08:50:21 CDT)
  • Norman Geist (Wed Oct 29 2014 - 04:10:16 CDT)
• BUG: vmd-1.9.2 final Representations GUI
  • Norman Geist (Wed Feb 11 2015 - 01:38:08 CST)
  • Norman Geist (Tue Feb 10 2015 - 10:30:48 CST)
  • John Stone (Tue Feb 10 2015 - 10:10:03 CST)
  • Norman Geist (Tue Feb 10 2015 - 05:01:19 CST)
  • John Stone (Mon Feb 09 2015 - 15:37:55 CST)
  • Norman Geist (Mon Feb 02 2015 - 05:30:42 CST)
  • Maxim Belkin (Mon Feb 02 2015 - 05:39:53 CST)
  • Norman Geist (Mon Feb 02 2015 - 03:52:52 CST)
• bug?
  • Ioana Cozmuta (Fri Jan 17 2003 - 22:08:41 CST)
• BUG? Hbond rep brakes RowInterleaved Stereo VMD 1.9.2a35
  • John Stone (Mon May 19 2014 - 11:28:07 CDT)
  • John Stone (Fri May 16 2014 - 14:31:17 CDT)
  • John Stone (Wed Apr 09 2014 - 14:15:43 CDT)
  • Norman Geist (Thu Apr 03 2014 - 02:17:38 CDT)
• Bugfix: new save_state.tcl for VMD 1.8 installations...
  • John Stone (Fri Jan 31 2003 - 14:02:44 CST)
• Bugs ? Representation window does not update new material
  • John Stone (Fri Oct 23 2009 - 11:06:20 CDT)
  • TRINH Minh Hieu (Fri Oct 23 2009 - 10:52:39 CDT)
  • John Stone (Fri Oct 23 2009 - 09:56:47 CDT)
  • TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
• Bugs and Questions
  • Joao Ribeiro (Thu Apr 25 2019 - 14:14:17 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 14:10:36 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 14:15:36 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 14:25:02 CDT)
  • Joao Ribeiro (Thu Apr 25 2019 - 14:22:44 CDT)
  • Joao Ribeiro (Thu Apr 25 2019 - 13:39:32 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 10:14:02 CDT)
• Bugs in solvate plugin
  • Peter Freddolino (Fri Jan 08 2016 - 13:57:47 CST)
  • Vlastimil Zíma (Wed Jan 06 2016 - 03:27:41 CST)
• Build a customized alpha helix using Molefacture by command
  • Thomas C. Bishop (Tue Jan 13 2015 - 10:36:11 CST)
  • Jian Dai (Tue Jan 13 2015 - 08:23:01 CST)
• Build a VMD forum?
  • Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
  • Stanley, Yemin Shi (Wed Mar 19 2008 - 15:49:08 CDT)
• build dependency
  • Axel Kohlmeyer (Fri Apr 09 2010 - 04:37:59 CDT)
  • Ajasja LjubetiÄ� (Fri Apr 09 2010 - 03:43:19 CDT)
  • Knut Jørgen Bjuland (Fri Apr 09 2010 - 02:28:48 CDT)
• Build graphene sheets using VMD
  • Axel Kohlmeyer (Thu Feb 20 2020 - 16:22:12 CST)
  • Amir Afshar (Thu Feb 20 2020 - 16:12:17 CST)
  • Amir Afshar (Thu Feb 20 2020 - 15:47:46 CST)
  • Axel Kohlmeyer (Thu Feb 20 2020 - 15:54:39 CST)
• build unit cells and supercells for VASP
  • §õ¤å¤Z (Wed Apr 17 2013 - 10:03:30 CDT)
• build virus envelope
  • sunyeping (Thu Apr 12 2018 - 23:34:06 CDT)
• Building a beta barrel using a beta hairpin
  • Diego Granados (Thu Jul 12 2012 - 17:27:43 CDT)
• Building a membrane
  • Sebastián Gutiérrez (Wed Jul 04 2012 - 17:40:32 CDT)
  • Vince Cho (Tue Jul 03 2012 - 12:44:39 CDT)
  • Sebastián Gutiérrez (Tue Jul 03 2012 - 11:31:41 CDT)
  • Vince Cho (Wed Jun 27 2012 - 23:03:54 CDT)
• Building a membrane from a individual surfactant molecule
  • surendra jain (Mon Nov 08 2010 - 06:27:02 CST)
• building a solvent/gas filled simulation box, no protein inside
  • Maxim Belkin (Fri Feb 05 2016 - 14:20:04 CST)
  • Olya Kravchenko (Thu Feb 04 2016 - 20:53:17 CST)
  • Olya Kravchenko (Thu Feb 04 2016 - 21:23:13 CST)
  • Peter Freddolino (Sat Jan 30 2016 - 19:28:40 CST)
  • Maxim Belkin (Fri Jan 29 2016 - 14:18:57 CST)
  • Olya Kravchenko (Fri Jan 29 2016 - 13:36:24 CST)
  • Olya Kravchenko (Fri Jan 29 2016 - 13:17:28 CST)
  • Maxim Belkin (Fri Jan 29 2016 - 13:26:21 CST)
• Building a sphere of atoms around a chosen atom
  • Axel Kohlmeyer (Tue Jan 03 2006 - 05:03:53 CST)
  • Chaitanya Krishna A (Mon Jan 02 2006 - 08:01:49 CST)
• Building Al2O3 or Fe2O3
  • Morrissey, Liam S. (Sat Jul 21 2018 - 15:59:29 CDT)
• building amino acid modification
  • Bennion, Brian (Wed Aug 27 2014 - 18:00:26 CDT)
• Building amino acid simulation box.
  • surya narayanan chandrasekaran (Thu Nov 01 2018 - 23:45:39 CDT)
• building an uncoming sulfide bridge
  • JC Gumbart (Thu Jul 10 2008 - 11:17:46 CDT)
  • Jim Pfaendtner (Thu Jul 10 2008 - 08:56:32 CDT)
• building bilayer with DOPC or other lipids
  • PREETA DATTA (Fri Feb 16 2007 - 04:29:41 CST)
• Building Boron Nitride
  • khannan krishna (Fri Jun 13 2014 - 00:23:03 CDT)
• Building HMMM using patch files
  • Vermaas, Joshua (Wed Aug 09 2017 - 18:09:02 CDT)
  • Vermaas, Joshua (Wed Aug 02 2017 - 11:47:10 CDT)
  • Arthur Vale (Tue Aug 01 2017 - 23:36:30 CDT)
  • Vermaas, Joshua (Mon Jul 31 2017 - 12:57:20 CDT)
  • Arthur Vale (Sun Jul 30 2017 - 14:14:17 CDT)
  • Vermaas, Joshua (Fri Jul 21 2017 - 17:00:38 CDT)
  • Vermaas, Joshua (Fri Jul 21 2017 - 16:07:26 CDT)
  • Arthur Vale (Thu Jul 20 2017 - 21:32:45 CDT)
  • Vermaas, Joshua (Thu Jul 20 2017 - 17:18:55 CDT)
  • Arthur Vale (Thu Jul 20 2017 - 17:13:41 CDT)
  • Vermaas, Joshua (Thu Jul 20 2017 - 16:35:15 CDT)
  • Arthur Vale (Thu Jul 20 2017 - 15:19:54 CDT)
• building loops
  • Peter Freddolino (Tue Jan 13 2009 - 19:18:55 CST)
  • riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
• Building LPS membrane
  • dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
• Building micelles
  • ABEL Stephane (Mon Jun 14 2021 - 04:42:05 CDT)
  • Raman Preet Singh (Sun Jun 13 2021 - 13:29:34 CDT)
• Building NAMD 2.12 from Source with IB and CUDA
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 02 2017 - 02:57:01 CST)
• building plugins fails on tcl based plugins
  • Bennion, Brian (Mon Nov 19 2012 - 14:59:18 CST)
• Building Plugins to work with Mac Builds
  • John Stone (Tue Jul 14 2015 - 15:03:05 CDT)
  • John Stone (Tue Jul 14 2015 - 14:45:46 CDT)
  • Hart, David Blaine (Tue Jul 14 2015 - 14:52:02 CDT)
  • Hart, David Blaine (Mon Jul 06 2015 - 17:26:13 CDT)
  • John Stone (Mon Jul 06 2015 - 16:42:34 CDT)
  • Hart, David Blaine (Mon Jul 06 2015 - 11:56:30 CDT)
• Building plugins with _USE_ZLIB (how to activate preprocessor macro)
  • John Stone (Tue Mar 13 2018 - 17:10:13 CDT)
  • Christian Leitold (Tue Mar 13 2018 - 17:33:24 CDT)
  • Axel Kohlmeyer (Tue Mar 13 2018 - 16:53:08 CDT)
  • John Stone (Tue Mar 13 2018 - 16:48:50 CDT)
  • Axel Kohlmeyer (Tue Mar 13 2018 - 16:32:37 CDT)
  • Axel Kohlmeyer (Tue Mar 13 2018 - 16:30:12 CDT)
  • Christian Leitold (Tue Mar 13 2018 - 15:25:36 CDT)
  • John Stone (Tue Mar 13 2018 - 14:29:20 CDT)
  • Christian Leitold (Tue Mar 13 2018 - 14:19:48 CDT)
• Building plugins with Borland Bcc32
  • Nicolas CHARVIN (Tue Mar 15 2005 - 11:30:14 CST)
  • John Stone (Mon Mar 14 2005 - 09:47:35 CST)
  • Nicolas CHARVIN (Mon Mar 14 2005 - 04:41:04 CST)
• Building polymer psf from monomer topology
  • Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
• building psf with CMAP, old topology remark entries still in psf
  • Sebastian Stolzenberg (Fri Apr 10 2009 - 18:22:15 CDT)
• Building structure
  • Brittany Boykin (Sat Nov 29 2014 - 14:38:49 CST)
• Building unit cell from asymmetric unit
  • Sebastián Gutiérrez (Thu Jul 05 2012 - 11:33:43 CDT)
  • Axel Kohlmeyer (Thu Jul 05 2012 - 01:50:28 CDT)
  • Sebastián Gutiérrez (Wed Jul 04 2012 - 17:16:32 CDT)
• Building VMD in Windows
  • John Stone (Mon May 01 2006 - 10:17:19 CDT)
  • Chang Hu (Sun Apr 30 2006 - 22:42:34 CDT)
  • John Stone (Sun Apr 30 2006 - 09:11:01 CDT)
  • Chang Hu (Sun Apr 30 2006 - 01:07:52 CDT)
  • John Stone (Sat Apr 29 2006 - 22:48:09 CDT)
  • Chang Hu (Sat Apr 29 2006 - 22:12:23 CDT)
• building VMD is tricky -please help
  • Rich Cook (Wed Dec 02 2009 - 15:14:03 CST)
  • John Stone (Wed Dec 02 2009 - 13:39:53 CST)
  • Rich Cook (Wed Dec 02 2009 - 13:26:42 CST)
  • John Stone (Tue Dec 01 2009 - 19:51:37 CST)
  • Axel Kohlmeyer (Tue Dec 01 2009 - 18:31:54 CST)
  • Rich Cook (Tue Dec 01 2009 - 17:50:48 CST)
  • John Stone (Tue Dec 01 2009 - 15:27:37 CST)
  • John Stone (Tue Dec 01 2009 - 14:03:53 CST)
  • Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
  • John Stone (Tue Dec 01 2009 - 10:05:01 CST)
  • Pieter van 't Hof (Tue Dec 01 2009 - 03:40:05 CST)
  • Dipesh Bhattarai (Mon Nov 30 2009 - 19:32:09 CST)
  • Rich Cook (Mon Nov 30 2009 - 17:49:23 CST)
• building VMD on LINUX
  • John Stone (Tue Mar 17 2009 - 10:03:16 CDT)
  • Axel Kohlmeyer (Tue Mar 17 2009 - 08:58:38 CDT)
  • Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
• Building VMD on OS X 10.6 with Python and CUDA support
  • John Stone (Tue Jul 20 2010 - 10:22:23 CDT)
  • John Stone (Tue Jul 20 2010 - 10:23:56 CDT)
  • Ian Stokes-Rees (Fri Jul 16 2010 - 02:41:24 CDT)
  • Ian Stokes-Rees (Fri Jul 16 2010 - 02:24:38 CDT)
  • Ian Stokes-Rees (Thu Jul 15 2010 - 22:44:34 CDT)
• building VMD on SGI IRIX 6.x
  • Joseph Landman (Wed Mar 26 1997 - 11:55:35 CST)
• Building VMD on windows 2000
  • B. Bennion (Mon Dec 16 2002 - 15:35:51 CST)
• Building VMD under Windows 2000
  • John Stone (Mon Sep 18 2000 - 09:53:51 CDT)
  • Laurence F. Wood (Sun Sep 17 2000 - 19:42:28 CDT)
• building VMD with opnempi support
  • John Stone (Thu May 16 2013 - 15:52:41 CDT)
  • Vlad Cojocaru (Thu May 16 2013 - 11:00:43 CDT)
• building VMD with Ubuntu 18.04
  • Keister, Bradley (Mon Aug 03 2020 - 12:46:15 CDT)
  • Michael Bielecki (Mon Aug 03 2020 - 12:33:46 CDT)
  • Keister, Bradley (Mon Aug 03 2020 - 10:26:34 CDT)
  • Josh Vermaas (Mon Aug 03 2020 - 10:18:55 CDT)
  • Axel Kohlmeyer (Mon Aug 03 2020 - 09:52:16 CDT)
  • Keister, Bradley (Mon Aug 03 2020 - 09:12:25 CDT)
• Building zeolite cage
  • Abu Naser (Fri Nov 28 2014 - 07:08:00 CST)
• Buried Surface Area
  • John Stone (Fri May 13 2005 - 09:52:30 CDT)
  • Matthew Wilce (Fri May 13 2005 - 09:33:36 CDT)
• by using Axel's HOOMD plugin, convert pdb to xml and missing bond information
  • Axel Kohlmeyer (Mon Sep 26 2016 - 06:11:58 CDT)
  • Axel Kohlmeyer (Sun Sep 25 2016 - 23:20:00 CDT)
  • Darren Li (Sun Sep 25 2016 - 22:40:02 CDT)
• Bypassing MM parameterization of ligand in QMMM
  • Francesco Pietra (Wed May 06 2020 - 02:49:55 CDT)
• bypassing MolFrac step
  • Upadhyay, Him [him.upadhyay_at_ndsu.edu] (Wed Jul 31 2013 - 12:02:36 CDT)
  • Mayne, Christopher G (Wed Jul 31 2013 - 11:53:04 CDT)
  • Upadhyay, Him [him.upadhyay_at_ndsu.edu] (Wed Jul 31 2013 - 11:45:23 CDT)
  • Mayne, Christopher G (Wed Jul 31 2013 - 09:35:13 CDT)
  • surya narayanan chandrasekaran (Wed Jul 31 2013 - 05:50:57 CDT)
• C atom projection calculation
  • Giacomo Fiorin (Thu Nov 17 2022 - 08:03:42 CST)
  • Kodituwakku,Dimuthu Nirmani (Wed Nov 16 2022 - 22:23:23 CST)
• C NH1 C minimization error
  • Sourmaidou, Damiani (Thu Jan 17 2008 - 06:43:18 CST)
• C-terminus link to side chain amine
  • Al-Ali, Hassan (Tue Oct 12 2010 - 08:33:46 CDT)
• c_top2psf.pl
  • Axel Kohlmeyer (Sat Aug 30 2014 - 11:21:33 CDT)
  • sunyeping (Sat Aug 30 2014 - 10:14:02 CDT)
• ca contact map
  • John Stone (Tue Feb 17 2004 - 10:40:01 CST)
  • Y U Sasidhar (Mon Feb 16 2004 - 20:36:06 CST)
• CA distance command
  • ban arn (Thu Feb 03 2011 - 08:16:14 CST)
• CA-CA distances in a trayectory
  • Luis Gracia (Thu Apr 14 2005 - 15:44:45 CDT)
  • Luis Gracia (Thu Apr 14 2005 - 12:18:00 CDT)
  • Axel Kohlmeyer (Thu Apr 14 2005 - 09:07:57 CDT)
  • Nuno R. L. Ferreira (Thu Apr 14 2005 - 03:29:03 CDT)
  • Michel Espinoza-Fonseca (Wed Apr 13 2005 - 18:31:10 CDT)
• Ca-dist script
  • Justin Gullingsrud (Fri Oct 13 2000 - 13:29:23 CDT)
  • Troy Wymore (Thu Oct 12 2000 - 13:36:59 CDT)
• caculate the RMSD of 10 DNA
  • Justin Gullingsrud (Wed Mar 07 2001 - 23:16:30 CST)
  • Kuen Phon Wu (Wed Mar 07 2001 - 22:50:24 CST)
• Cafe 1.0 plugin does not recognize commands
  • DENILSON FERREIRA DE OLIVEIRA (Wed Jul 13 2022 - 12:43:56 CDT)
  • PaweÅ‚ KÄ™dzierski (Wed Jul 13 2022 - 04:09:11 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Wed Jul 13 2022 - 02:40:55 CDT)
  • John Stone (Tue Jul 12 2022 - 17:19:33 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Mon Jul 11 2022 - 09:07:19 CDT)
• CAFE plugin
  • Giacomo Fiorin (Wed Oct 13 2021 - 08:31:26 CDT)
  • José Villalaín (Wed Oct 13 2021 - 06:27:18 CDT)
• CaFE Plugin - Didn't Find vDW Parameter for Atom Type HT1 Error
  • Efthymiou, Christos (Thu Aug 18 2022 - 15:16:34 CDT)
  • Geist, Norman (Thu Aug 18 2022 - 12:50:18 CDT)
  • Efthymiou, Christos (Thu Aug 18 2022 - 11:11:35 CDT)
• CaFE VMD Plugin Errors at PB Calculation Step
  • Efthymiou, Christos (Fri Aug 19 2022 - 04:03:25 CDT)
• Calculate accessible surface area
  • John Stone (Tue Aug 17 2004 - 13:12:05 CDT)
  • Shirley Li (Mon Aug 16 2004 - 19:35:29 CDT)
  • John Stone (Mon Aug 16 2004 - 14:12:02 CDT)
  • Shirley Li (Fri Aug 13 2004 - 17:14:33 CDT)
• Calculate angles using fit_angle.tcl
  • amin_at_imtech.res.in (Sat Oct 15 2016 - 03:25:48 CDT)
• calculate atom distance between two chain
  • John Stone (Mon Jul 18 2011 - 09:57:59 CDT)
  • hamze rahimi (Mon Jul 18 2011 - 06:31:04 CDT)
• Calculate CC in MDFF
  • Mihaljevic-Juric Paula (Mme) (Wed Sep 25 2019 - 10:26:41 CDT)
  • John Stone (Wed Sep 25 2019 - 10:34:27 CDT)
• calculate charges of the binding site residues with psfgen
  • Axel Kohlmeyer (Sun May 10 2009 - 07:00:29 CDT)
  • Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
  • Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
• Calculate density
  • Axel Kohlmeyer (Wed Nov 21 2007 - 14:20:15 CST)
  • Jianhui Tian (Mon Nov 19 2007 - 15:21:20 CST)
• Calculate End-End distance for DCD
  • Ana Celia Araujo Vila Verde (Tue Mar 13 2007 - 16:17:48 CDT)
  • Jianhui Tian (Tue Mar 13 2007 - 15:17:00 CDT)
• calculate end-to-end distance with trajectory files
  • John Stone (Mon Oct 22 2012 - 10:49:01 CDT)
  • Eric Lovejoy (Sat Oct 20 2012 - 16:44:13 CDT)
• Calculate Free Binding Energy of Protein-Protein Complex: CaFE Extension
  • Efthymiou, Christos (Tue Jun 28 2022 - 14:26:49 CDT)
• Calculate Free Energy of Protein-Protein Binding
  • Giacomo Fiorin (Thu May 12 2022 - 15:23:05 CDT)
  • Efthymiou, Christos (Thu May 12 2022 - 13:55:43 CDT)
• Calculate Free Volume?
  • Axel Kohlmeyer (Mon Oct 19 2009 - 08:59:32 CDT)
  • YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
• calculate g(r)
  • Axel Kohlmeyer (Sun Oct 15 2017 - 14:09:46 CDT)
  • melika_ bm85 (Sun Oct 15 2017 - 09:29:56 CDT)
  • Axel Kohlmeyer (Sun Oct 15 2017 - 08:42:56 CDT)
  • Monika Madhavi (Sun Oct 15 2017 - 07:44:44 CDT)
  • melika_ bm85 (Sun Oct 15 2017 - 07:36:10 CDT)
  • Axel Kohlmeyer (Sun Oct 15 2017 - 07:00:57 CDT)
  • Monika Madhavi (Sun Oct 15 2017 - 07:14:20 CDT)
  • melika_ bm85 (Sun Oct 15 2017 - 05:49:12 CDT)
• calculate HBOND
  • Martin, Erik W (Tue Nov 13 2012 - 14:21:26 CST)
  • George Lai (Tue Nov 13 2012 - 12:54:23 CST)
  • Martin, Erik W (Mon Nov 12 2012 - 22:04:11 CST)
  • George Lai (Mon Nov 12 2012 - 19:48:50 CST)
• calculate radius of empty space between selected residue
  • Yogesh Sharma (Wed Oct 20 2021 - 04:31:59 CDT)
• calculate rmsd in a loop:feedback [sorry if you get it twice]
  • Axel Kohlmeyer (Fri Nov 18 2005 - 08:54:02 CST)
  • andrea spitaleri (Fri Nov 18 2005 - 10:16:01 CST)
  • andrea spitaleri (Fri Nov 18 2005 - 05:31:21 CST)
  • l.spitzer_at_fr.fournierpharma.com (Fri Nov 18 2005 - 04:48:26 CST)
  • Nuno R. L. Ferreira (Fri Nov 18 2005 - 04:10:16 CST)
  • andrea spitaleri (Fri Nov 18 2005 - 03:42:29 CST)
  • Luis Gracia (Thu Nov 17 2005 - 12:11:20 CST)
  • Axel Kohlmeyer (Thu Nov 17 2005 - 06:20:35 CST)
  • Nuno R. L. Ferreira (Thu Nov 17 2005 - 03:31:13 CST)
  • andrea spitaleri (Thu Nov 17 2005 - 02:50:19 CST)
• calculate side-chain dihedral/torsion angles
  • Ajasja LjubetiÄ� (Tue Jun 29 2010 - 09:14:08 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 14:24:17 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 12:36:36 CDT)
  • Axel Kohlmeyer (Mon Apr 12 2010 - 08:58:28 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 08:45:13 CDT)
  • Axel Kohlmeyer (Mon Apr 12 2010 - 08:08:08 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 06:38:16 CDT)
  • Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 03:43:25 CDT)
• calculate structure of protein
  • Ashar Malik (Fri Oct 03 2014 - 07:18:08 CDT)
  • Rangeen Othman (Fri Oct 03 2014 - 06:45:21 CDT)
• calculate the angle between two principal axes from two selecton
  • sunyeping (Thu Sep 29 2016 - 04:49:57 CDT)
• Calculate the area of overlap?
  • John Stone (Mon May 23 2005 - 10:22:28 CDT)
  • Brian Kidd (Sat May 21 2005 - 02:01:04 CDT)
• Calculate the bond and angle energy of a glucosidic linkage using NAMD Energy plugin
  • Peter Freddolino (Mon Feb 25 2019 - 07:47:05 CST)
  • Ern Ong (Mon Feb 25 2019 - 04:39:21 CST)
• calculate the percentage of beta-sheet and alpha helix with time evolution
  • John Stone (Thu Apr 04 2019 - 23:55:04 CDT)
  • Saikat Pal (Wed Apr 03 2019 - 00:24:11 CDT)
• calculate the solvent molecule within a cut off from protein
  • aiswarya pawar (Thu Sep 15 2011 - 05:36:25 CDT)
• Calculate torsional angle with big_dcd adding a boolean control for pyrimidines and purines selection
  • Josh Vermaas (Wed Aug 26 2015 - 09:09:01 CDT)
  • Josh Vermaas (Wed Aug 26 2015 - 08:04:56 CDT)
  • Mahad Gatti (Wed Aug 26 2015 - 05:41:09 CDT)
• Calculate VolMap for every frame by a script
  • Axel Kohlmeyer (Tue Feb 27 2007 - 17:25:16 CST)
  • Bob Johnson (Tue Feb 27 2007 - 16:21:12 CST)
• calculate volume
  • John Stone (Sat Mar 08 2008 - 19:03:06 CST)
  • Dong Xu (Sat Mar 08 2008 - 17:28:39 CST)
  • Axel Kohlmeyer (Sat Mar 08 2008 - 12:29:19 CST)
  • Dong Xu (Sat Mar 08 2008 - 11:09:36 CST)
  • John Stone (Sat Mar 08 2008 - 00:01:06 CST)
  • Dong Xu (Fri Mar 07 2008 - 22:46:28 CST)
  • John Stone (Fri Mar 07 2008 - 22:20:45 CST)
  • Dong Xu (Fri Mar 07 2008 - 21:20:40 CST)
• Calculating acyl chain order parameter profile on phospholipid vesicles
  • dimka (Tue Jan 13 2009 - 10:28:43 CST)
  • Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
• Calculating and drawing symmetry axes
  • Eugene Valkov (Thu Dec 02 2004 - 13:37:14 CST)
• Calculating angles between subunits
  • John Stone (Thu Nov 06 2003 - 16:10:35 CST)
  • John Stone (Fri Oct 24 2003 - 19:11:25 CDT)
  • Markus Laub (Wed Oct 22 2003 - 07:37:44 CDT)
• calculating b-factors from trajectories
  • gozorows_at_uci.edu (Wed May 23 2007 - 14:00:53 CDT)
  • Brian Bennion (Wed May 23 2007 - 10:34:57 CDT)
  • Leandro Martínez (Tue May 22 2007 - 20:57:01 CDT)
  • gozorows_at_uci.edu (Tue May 22 2007 - 17:53:27 CDT)
• Calculating Bias for Well-tempered metadynamics
  • Giacomo Fiorin (Sat Apr 25 2020 - 19:51:01 CDT)
  • Giacomo Fiorin (Fri Apr 24 2020 - 13:37:28 CDT)
  • Giacomo Fiorin (Thu Apr 23 2020 - 19:00:11 CDT)
• Calculating changes
  • Peter Freddolino (Tue Dec 12 2006 - 14:07:18 CST)
  • Per Jr. Greisen (Tue Dec 12 2006 - 12:56:37 CST)
• Calculating density for a molecule
  • Research Jubilant (Fri Feb 07 2014 - 11:36:41 CST)
• Calculating Diffusion Coefficient Using VMD
  • Philippe Bopp (Tue May 01 2018 - 21:38:17 CDT)
  • Axel Kohlmeyer (Tue May 01 2018 - 19:25:54 CDT)
  • Sonibare, Kolawole (Tue May 01 2018 - 18:22:52 CDT)
  • Axel Kohlmeyer (Mon Apr 23 2018 - 14:01:31 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 13:29:19 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 12:22:39 CDT)
  • Giacomo Fiorin (Mon Apr 23 2018 - 11:12:49 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 10:58:56 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 08:56:34 CDT)
• Calculating dipole moment of protein
  • Axel Kohlmeyer (Fri Mar 02 2007 - 07:41:25 CST)
  • Per Jr. Greisen (Fri Mar 02 2007 - 06:26:23 CST)
• calculating distance between center of geometry/mass of methyl hydrogens for all residue pairs
  • Zu Thur Yew (Mon Mar 19 2007 - 18:48:41 CDT)
• calculating distance between center of mass of two set of residues
  • Josh Vermaas (Thu Jun 27 2013 - 14:29:11 CDT)
  • Peterson J (Thu Jun 27 2013 - 13:06:44 CDT)
• Calculating distances from command line VMD 1.9.2
  • debra ragland (Tue Sep 01 2015 - 08:08:11 CDT)
• calculating lipid order parameters
  • Philip Fowler (Wed Sep 21 2005 - 07:54:59 CDT)
• Calculating mean square displacement and removing PBC
  • Axel Kohlmeyer (Thu Oct 22 2020 - 15:03:21 CDT)
  • Josh Vermaas (Thu Oct 22 2020 - 14:50:49 CDT)
  • RonitS Chem (Thu Oct 22 2020 - 14:33:57 CDT)
  • Axel Kohlmeyer (Thu Oct 22 2020 - 14:28:43 CDT)
  • RonitS Chem (Thu Oct 22 2020 - 14:16:06 CDT)
  • Axel Kohlmeyer (Thu Oct 22 2020 - 13:47:24 CDT)
  • RonitS Chem (Thu Oct 22 2020 - 13:09:34 CDT)
• Calculating minimal distance between two groups
  • eladp_at_hplus.tau.ac.il (Mon Nov 14 2005 - 10:02:59 CST)
• calculating number of water and osmolytes molecules at particular distance from protein surface.
  • Ashar Malik (Thu Jan 31 2019 - 00:00:10 CST)
  • ISHRAT JAHAN (Wed Jan 30 2019 - 23:09:41 CST)
• Calculating parameters in lipid bilayers
  • Andrés Morales (Thu Oct 20 2011 - 22:04:03 CDT)
• Calculating pocket volume
  • ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
  • Peter Freddolino (Thu Aug 28 2008 - 17:27:44 CDT)
• Calculating RDF from xyz file
  • Axel Kohlmeyer (Thu Mar 01 2012 - 17:36:46 CST)
  • siladitya mukherjee (Thu Mar 01 2012 - 16:38:54 CST)
• Calculating rdfs without the VMD gui
  • Salvador H-V (Thu Mar 14 2013 - 08:26:32 CDT)
  • Josh Vermaas (Wed Mar 13 2013 - 19:03:32 CDT)
  • Salvador H-V (Wed Mar 13 2013 - 17:46:25 CDT)
  • Josh Vermaas (Wed Mar 13 2013 - 15:15:18 CDT)
  • Salvador H-V (Wed Mar 13 2013 - 10:37:39 CDT)
  • Jérôme Hénin (Wed Mar 13 2013 - 02:36:42 CDT)
  • Salvador H-V (Tue Mar 12 2013 - 14:42:57 CDT)
• Calculating residence time
  • M K (Fri Apr 03 2015 - 02:49:45 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 02:37:04 CDT)
  • M K (Wed Apr 01 2015 - 23:08:33 CDT)
• calculating RMSD for a trajectory file
  • Ashar Malik (Mon Dec 21 2015 - 05:20:43 CST)
  • Mai Aamer (Mon Dec 21 2015 - 04:44:53 CST)
• Calculating RMSD on two sets of points
  • Axel Kohlmeyer (Tue May 10 2011 - 10:43:51 CDT)
  • Carolyn Phillips (Tue May 10 2011 - 10:13:56 CDT)
  • Carolyn Phillips (Tue May 10 2011 - 09:57:25 CDT)
• Calculating RMSF for a lot of trajectories
  • Josh Vermaas (Thu May 29 2014 - 13:22:25 CDT)
  • Axel Kohlmeyer (Thu May 29 2014 - 11:59:26 CDT)
  • Ricard Argelaguet (Thu May 29 2014 - 11:22:18 CDT)
• Calculating RMSF plots without using scripts!!!
  • Robert Selwyne (Mon Jun 05 2006 - 03:36:54 CDT)
• Calculating system net charge with tcl in VMD
  • Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
  • Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
  • Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
  • DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
• Calculating the Tilt Angle of a non-helical peptide
  • Axel Kohlmeyer (Wed Mar 19 2008 - 21:52:58 CDT)
  • Axel Kohlmeyer (Wed Mar 19 2008 - 21:07:06 CDT)
  • Arneh Babakhani (Wed Mar 19 2008 - 21:37:45 CDT)
  • Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
• Calculating the torsion angles in nucleic acids
  • Peter Freddolino (Thu Sep 11 2008 - 08:52:36 CDT)
  • mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
• Calculating time variation of potential.
  • Pranjal Sur (Fri Sep 23 2022 - 04:47:39 CDT)
• calculating total energy
  • John Stone (Tue Sep 17 2013 - 00:08:49 CDT)
  • rasti_at_ut.ac.ir (Sun Sep 15 2013 - 03:17:42 CDT)
• Calculating volumes enclosed by SAS
  • Deepangi Pandit (Fri Nov 21 2008 - 16:09:12 CST)
  • Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
• Calculating volumetric data for a molecule
  • John Stone (Tue Jul 24 2007 - 23:10:06 CDT)
  • Cesar Luis Avila (Tue Jul 24 2007 - 17:30:43 CDT)
• calculation hydrogen bond.
  • JC Gumbart (Fri Oct 21 2011 - 06:55:18 CDT)
  • subrata paul (Thu Oct 20 2011 - 02:19:04 CDT)
• calculation limit of gofr?
  • Axel Kohlmeyer (Thu Jul 05 2007 - 09:47:43 CDT)
  • Philipp Schön (Thu Jul 05 2007 - 10:16:00 CDT)
• calculation of alpha helical content
  • Peter Freddolino (Tue Dec 11 2007 - 12:05:04 CST)
  • L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 11:18:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 10:29:24 CST)
  • Peter Freddolino (Tue Dec 11 2007 - 10:39:05 CST)
• calculation of angular distribution function
  • Subrata Paul (Thu Sep 05 2013 - 09:32:12 CDT)
• calculation of binding energy
  • vani panguluri (Wed Mar 16 2011 - 23:06:45 CDT)
• calculation of free energy between lipid membrane and protein
  • Axel Kohlmeyer (Thu Mar 01 2007 - 11:40:00 CST)
  • Shulin Zhuang (Thu Mar 01 2007 - 01:11:10 CST)
  • Shulin Zhuang (Thu Mar 01 2007 - 00:17:25 CST)
• calculation of geometric centers of the rings
  • Vikas Varshney (Tue Jul 26 2016 - 08:15:13 CDT)
• Calculation of gofr for non-orthorhombic boxes
  • Axel Kohlmeyer (Tue Jan 01 2019 - 22:55:07 CST)
  • HEMANTH H 18310019 (Tue Jan 01 2019 - 02:55:14 CST)
• Calculation of ligand displacement Vs time
  • Ban Arn (Mon Jan 30 2012 - 03:53:27 CST)
• Calculation of no. of turns, pitch in DNA
  • Anurag Sharma (Wed Jun 12 2013 - 13:49:04 CDT)
  • Anurag Sharma (Wed Jun 05 2013 - 17:04:45 CDT)
• Calculation of pair distribution function
  • shyam sharma (Sat Jun 09 2018 - 00:19:21 CDT)
• Calculation of residue pair energy values
  • Vermaas, Josh (Mon Feb 15 2021 - 13:51:56 CST)
  • Manas Kohli (Mon Feb 15 2021 - 13:02:25 CST)
  • Peter Freddolino (Mon Feb 15 2021 - 11:07:34 CST)
  • Manas Kohli (Mon Feb 15 2021 - 08:51:54 CST)
  • Daniel Fellner (Sun Feb 14 2021 - 19:23:10 CST)
  • Daniel STERBULEAC (Sun Feb 14 2021 - 16:46:12 CST)
  • Manas Kohli (Sun Feb 14 2021 - 07:54:51 CST)
• calculation of RMS values
  • Andrew Dalke (Wed Aug 19 1998 - 13:49:12 CDT)
  • Christoph Schneider (Wed Aug 19 1998 - 04:05:51 CDT)
• Calculation of RMSF
  • John Stone (Mon Dec 19 2005 - 17:21:51 CST)
  • John Stone (Wed Dec 14 2005 - 18:45:30 CST)
  • h9826299_at_hkusua.hku.hk (Wed Dec 14 2005 - 17:10:28 CST)
• calculation of rotation angle
  • Giacomo Fiorin (Wed Mar 22 2023 - 05:27:42 CDT)
  • Norbert Straeter (Wed Mar 22 2023 - 03:35:17 CDT)
  • Ashar Malik (Tue Mar 21 2023 - 15:50:07 CDT)
  • Sangita Kachhap (Tue Mar 21 2023 - 13:05:05 CDT)
• Calculation of VAF using signalproc plugin
  • Axel Kohlmeyer (Wed Jun 05 2013 - 00:40:52 CDT)
  • Mingchao Wang (Tue Jun 04 2013 - 21:04:40 CDT)
  • Axel Kohlmeyer (Mon Jun 03 2013 - 03:16:35 CDT)
  • Mingchao Wang (Mon Jun 03 2013 - 00:33:25 CDT)
• Calculation the Surface Area/Volume of a Protein Cavity
  • MUHAMMAD IMTIA SHAFIQ (Thu Dec 10 2009 - 05:24:12 CST)
• Call for participation: ISQBP Meeting, Telluride 15-19.06.2014
  • Vlad Cojocaru (Mon Mar 10 2014 - 11:38:42 CDT)
• Call to Stride program failed
  • John Stone (Fri Feb 18 2005 - 10:35:00 CST)
  • Jérôme Hénin (Fri Feb 18 2005 - 10:05:37 CST)
  • John Stone (Fri Feb 18 2005 - 09:49:33 CST)
  • Jérôme Hénin (Fri Feb 18 2005 - 09:42:27 CST)
• Calling all DCD files in a directory sequentially using CatDCD
  • Cosseddu, Salvatore (Tue Jan 24 2012 - 03:47:29 CST)
  • Bryan Roessler (Mon Jan 23 2012 - 18:24:07 CST)
  • Bryan Roessler (Mon Jan 23 2012 - 16:15:48 CST)
  • John Stone (Mon Jan 23 2012 - 15:24:51 CST)
  • Bryan Roessler (Mon Jan 23 2012 - 15:11:34 CST)
• Calling Python hackers....
  • John Stone (Tue Feb 08 2005 - 14:00:36 CST)
  • Charles_at_Schwieters.org (Tue Feb 08 2005 - 11:11:21 CST)
  • John Stone (Sun Feb 06 2005 - 20:00:30 CST)
  • Justin Gullingsrud (Fri Feb 04 2005 - 17:50:58 CST)
  • John Stone (Fri Feb 04 2005 - 14:56:59 CST)
• calling scripts from the command line
  • John Stone (Thu Dec 08 2005 - 18:12:26 CST)
  • Galip Gurkan Yardimci (Thu Dec 01 2005 - 04:36:45 CST)
• Calling VMD from Linux Cluster
  • John Stone (Fri Aug 29 2014 - 17:20:47 CDT)
  • Gonzalez, Aaron (Fri Aug 29 2014 - 12:34:02 CDT)
• Camera in VMD!!!
  • Schreiner Eduard (Sat Oct 25 2008 - 00:18:58 CDT)
  • Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
• camera navigator question
  • John Stone (Thu Feb 26 2015 - 14:13:24 CST)
  • Nuno Sousa Cerqueira (Mon Feb 23 2015 - 16:42:16 CST)
• camera position and scale
  • John Stone (Wed Feb 01 2012 - 23:18:23 CST)
  • Arham Amouie (Mon Jan 09 2012 - 08:09:46 CST)
• Can a script change the projection?
  • Jeff Taylor (Mon Jun 04 2001 - 15:04:53 CDT)
• Can any of you help me out in building VMD pls
  • John Stone (Mon Mar 11 2002 - 00:11:44 CST)
  • John Stone (Fri Mar 08 2002 - 09:47:04 CST)
  • Kiran, Kotresh (Fri Mar 08 2002 - 05:48:35 CST)
• CAN ANY ONE HELP ME
  • John Stone (Wed Jun 02 2010 - 12:51:24 CDT)
  • vani panguluri (Wed Jun 02 2010 - 11:44:33 CDT)
  • John Stone (Wed Jun 02 2010 - 11:01:15 CDT)
  • vani panguluri (Wed Jun 02 2010 - 10:09:08 CDT)
• Can anyone help me get the coordinate of the cylinders in the cartoon representation?
  • John Stone (Wed Mar 03 2010 - 10:56:00 CST)
  • Chen, Bo (NIH/NIDDK) [F] (Fri Feb 26 2010 - 11:11:42 CST)
• Can anyone help me out with this script
  • John Stone (Sun Apr 01 2007 - 23:03:24 CDT)
  • Jianhui Tian (Sat Mar 31 2007 - 19:50:43 CDT)
  • John Stone (Sat Mar 31 2007 - 00:05:17 CDT)
  • Jianhui Tian (Fri Mar 30 2007 - 14:49:45 CDT)
• Can bonds radius be controlled by tcl command?
  • Axel Kohlmeyer (Wed May 13 2009 - 17:55:17 CDT)
  • Roman Petrenko (Wed May 13 2009 - 17:09:09 CDT)
  • John Stone (Wed May 13 2009 - 16:19:16 CDT)
  • accomp lin (Wed May 13 2009 - 03:54:47 CDT)
• Can Catdcd Write Out Periodic Cell Size Information?
  • Tessa Young (Tue Nov 29 2011 - 23:06:25 CST)
  • Pablo M. De Biase (Mon Nov 28 2011 - 17:41:40 CST)
  • Axel Kohlmeyer (Mon Nov 28 2011 - 17:13:02 CST)
  • Jeffrey Potoff (Mon Nov 28 2011 - 16:30:08 CST)
  • Pablo M. De Biase (Mon Nov 28 2011 - 16:11:36 CST)
  • Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
  • Axel Kohlmeyer (Mon Nov 28 2011 - 11:45:47 CST)
  • Pablo M. De Biase (Mon Nov 28 2011 - 10:39:55 CST)
  • Tessa Young (Mon Nov 28 2011 - 01:20:31 CST)
• Can I build a structure by VMD?
  • Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
  • John Stone (Wed Jul 15 2009 - 14:36:56 CDT)
• Can I calculate B-factor using VMD
  • Maximilian Ebert (Wed Feb 27 2013 - 15:54:51 CST)
  • John Stone (Wed Feb 27 2013 - 10:22:00 CST)
  • Sindrila Dutta Banik (Tue Feb 26 2013 - 01:19:10 CST)
• can I change the axes type to look like something like a graduated coordinate?
  • Tristan Croll (Sun Nov 08 2015 - 19:33:17 CST)
  • Nima Soltani (Sun Nov 08 2015 - 15:23:51 CST)
• can I combine several dcd files into one dcd file?
  • John E. Kerrigan (Wed Jan 05 2005 - 12:52:38 CST)
  • Justin Gullingsrud (Wed Jan 05 2005 - 10:30:56 CST)
  • mashaojie163 (Wed Jan 05 2005 - 08:55:14 CST)
• Can I load NetCDF trajectories from AMBER in VMD on a Windows machine?
  • Axel Kohlmeyer (Sat Jan 17 2015 - 17:11:07 CST)
  • Emilio Lence (Fri Jan 16 2015 - 06:12:54 CST)
• can not compile VMD plugin
  • hongphuc nguyen (Wed Jun 22 2011 - 22:48:34 CDT)
  • hongphuc nguyen (Wed Jun 22 2011 - 22:15:55 CDT)
• Can not enter text in VMD plugin window
  • John Stone (Mon Apr 28 2008 - 13:25:30 CDT)
  • Dong Xu (Mon Apr 28 2008 - 13:04:52 CDT)
  • John Stone (Sat Apr 26 2008 - 00:25:15 CDT)
  • Dong Xu (Sat Apr 26 2008 - 00:10:04 CDT)
  • John Stone (Fri Apr 25 2008 - 21:53:05 CDT)
  • Axel Kohlmeyer (Fri Apr 25 2008 - 21:52:12 CDT)
  • Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
• can not import Hessian/charge from single point calculation
  • Bennion, Brian (Wed Jun 22 2011 - 12:55:36 CDT)
  • Bennion, Brian (Tue Jun 21 2011 - 12:04:46 CDT)
  • hongphuc nguyen (Tue Jun 21 2011 - 03:14:15 CDT)
• Can not run VMD in interactive mode on the supercomputer from Mac
  • Diego Gomes (Thu Apr 11 2024 - 09:48:49 CDT)
  • mohamed marzouk (Thu Apr 11 2024 - 01:16:59 CDT)
• can not visualize bond in vmd
  • Chunli Yan (Fri Nov 04 2022 - 12:49:26 CDT)
• Can paratools really parametrize a structure? Is it really finished?
  • Ranyere Deyler (Mon Feb 28 2011 - 10:55:21 CST)
• Can specden produce the autocorrelation and not only the powerspectrum?
  • Giacomo Fiorin (Wed Feb 07 2018 - 08:51:27 CST)
  • Giacomo Fiorin (Tue Feb 06 2018 - 13:10:44 CST)
  • Axel Kohlmeyer (Tue Feb 06 2018 - 12:46:27 CST)
  • sperez14_at_us.es (Tue Feb 06 2018 - 12:13:34 CST)
• Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program?
  • Anton Arkhipov (Tue Apr 28 2009 - 10:34:04 CDT)
  • Axel Kohlmeyer (Tue Apr 28 2009 - 08:32:24 CDT)
  • wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
• Can VMD add other organic solvent into system?
  • weikai (Wed Sep 28 2005 - 02:51:38 CDT)
• Can VMD add other solvent except water in system?
  • Leonardo Sepulveda Durán (Mon Sep 26 2005 - 10:59:58 CDT)
  • John Stone (Mon Sep 26 2005 - 10:12:51 CDT)
  • Joshua D. Moore (Mon Sep 26 2005 - 06:21:38 CDT)
  • weikai (Mon Sep 26 2005 - 03:17:42 CDT)
• can vmd add protons to particular atoms?
  • yp sun (Tue Dec 18 2012 - 00:43:01 CST)
• Can VMD build predicted protein structures by homology?
  • John Stone (Fri Dec 03 2010 - 12:02:47 CST)
  • Seweryn Bialasiewicz (Mon Nov 29 2010 - 21:43:11 CST)
• can VMD display a box?
  • Marc Baaden (Thu Nov 28 2002 - 07:26:05 CST)
  • Minerva Gonzalez (Thu Nov 28 2002 - 12:23:15 CST)
• Can vmd do symmetry operation?
  • John Stone (Wed Oct 12 2005 - 17:03:56 CDT)
  • mashaojie163 (Tue Oct 11 2005 - 21:49:00 CDT)
• can VMD render movies in stereo quad-buffered mode?
  • John Stone (Fri Oct 31 2014 - 14:48:09 CDT)
  • Jose Borreguero (Fri Oct 31 2014 - 13:11:58 CDT)
• Can vmd select residues in radius of 3.5 to a specific residue?
  • John Stone (Fri Mar 18 2005 - 08:16:15 CST)
  • Marc Q. Ma (Fri Mar 18 2005 - 07:59:59 CST)
  • J. Rui Rodrigues (Fri Mar 18 2005 - 06:21:08 CST)
  • scopio (Fri Mar 18 2005 - 05:52:43 CST)
• can VMD show artificial bond info?
  • John Stone (Wed Oct 19 2005 - 18:52:46 CDT)
  • jiwu liu (Wed Oct 19 2005 - 18:04:31 CDT)
• Can VMD show the interactions between different structure part?
  • Ben Chern (Thu Mar 27 2008 - 20:26:13 CDT)
  • Ben Chern (Thu Mar 27 2008 - 06:35:56 CDT)
  • Axel Kohlmeyer (Thu Mar 27 2008 - 06:43:41 CDT)
  • Axel Kohlmeyer (Wed Mar 26 2008 - 23:19:40 CDT)
  • Ben Chern (Wed Mar 26 2008 - 22:20:57 CDT)
• Can VMD visualize forces?
  • Thomas C. Bishop (Fri Jan 25 2008 - 09:44:29 CST)
  • John Stone (Thu Jan 24 2008 - 18:01:20 CST)
  • Yinglong Miao (Thu Jan 24 2008 - 17:16:14 CST)
• can we control the number and distribution of solvate molecular
  • John Stone (Wed Aug 12 2009 - 16:14:30 CDT)
  • pxq ÅÓÑ©ÇÛ (Wed Aug 12 2009 - 03:02:33 CDT)
• can we delete in command line?
  • Abhijit Muley (Wed Aug 20 2014 - 09:09:27 CDT)
  • John Stone (Wed Aug 20 2014 - 08:34:33 CDT)
  • Albert (Wed Aug 20 2014 - 04:29:42 CDT)
• can we export VMD scene as webGL file?
  • Albert (Sat Oct 17 2015 - 02:23:54 CDT)
  • Albert (Sat Oct 17 2015 - 02:23:18 CDT)
  • Albert (Sat Oct 17 2015 - 02:22:56 CDT)
  • Albert (Fri Oct 16 2015 - 16:52:19 CDT)
  • John Stone (Fri Oct 16 2015 - 17:01:34 CDT)
  • Albert (Fri Oct 16 2015 - 16:22:59 CDT)
  • John Stone (Fri Oct 16 2015 - 16:34:10 CDT)
• Can we fix the position of two atoms while minimization?
  • John Stone (Wed Sep 29 2004 - 12:40:52 CDT)
  • Shahid Qamar (Wed Sep 29 2004 - 10:39:50 CDT)
• Can we get secondary structure from PDB files?
  • Ben Chern (Wed Mar 26 2008 - 22:12:12 CDT)
  • John Stone (Wed Mar 26 2008 - 21:26:46 CDT)
  • Ben Chern (Wed Mar 26 2008 - 20:44:00 CDT)
  • Axel Kohlmeyer (Wed Mar 26 2008 - 06:15:42 CDT)
  • Ben Chern (Wed Mar 26 2008 - 04:02:04 CDT)
• can we visualize sos file?
  • John Stone (Wed Nov 12 2014 - 22:42:24 CST)
  • Albert (Sat Nov 08 2014 - 10:18:08 CST)
• Can you show me an example of the .xyz file that is used to calculate the IR spectrum
  • Axel Kohlmeyer (Mon Feb 23 2009 - 14:46:18 CST)
  • Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
• can't add packages
  • Axel Kohlmeyer (Sat Jul 28 2007 - 17:32:46 CDT)
  • karan uppal (Sat Jul 28 2007 - 12:59:37 CDT)
• can't build VMD on MacOs Ventura: use of undeclared identifier 'msms'
  • Alexander Beerhoff (Tue Mar 07 2023 - 19:55:15 CST)
  • John Stone (Tue Mar 07 2023 - 12:55:57 CST)
  • Alexander Beerhoff (Tue Mar 07 2023 - 08:56:42 CST)
• Can't compile VMD 1.8.3: Tachyon 0.97 needed
  • John Stone (Fri Mar 18 2005 - 09:42:22 CST)
  • Sangwoo Shim (Fri Mar 18 2005 - 03:49:33 CST)
  • John Stone (Thu Feb 17 2005 - 09:48:00 CST)
  • Sangwoo Shim (Thu Feb 17 2005 - 01:54:04 CST)
• Can't connect to BioCORE
  • M Suma (Tue Mar 26 2024 - 02:03:14 CDT)
• Can't execvp vmd_SOLARISX86
  • Austin Small (Tue Sep 25 2007 - 16:14:16 CDT)
  • John Stone (Sun Sep 23 2007 - 21:49:23 CDT)
  • Austin Small (Sun Sep 23 2007 - 23:42:50 CDT)
• CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES
  • snoze pa (Sun Feb 14 2010 - 12:47:04 CST)
  • Francesco Pietra (Sun Feb 14 2010 - 11:32:57 CST)
  • Francesco Pietra (Sun Feb 14 2010 - 10:26:01 CST)
• Can't find C-PDB bond parameters
  • Francesco Pietra (Mon Feb 15 2010 - 03:46:29 CST)
• can't find file
  • sarah k (Sun Apr 04 2010 - 12:02:56 CDT)
  • John Stone (Mon Mar 29 2010 - 10:11:23 CDT)
  • sarah k (Mon Mar 29 2010 - 02:46:20 CDT)
• Can't import python math module
  • John Stone (Mon Mar 24 2003 - 10:47:19 CST)
  • Scott Stagg (Fri Mar 21 2003 - 10:16:14 CST)
• Can't load a large dcd?
  • John Stone (Fri Jan 27 2006 - 15:28:31 CST)
  • John Stone (Thu Jan 26 2006 - 10:41:41 CST)
  • Axel Kohlmeyer (Thu Jan 26 2006 - 07:09:22 CST)
  • Vineet Pande (Thu Jan 26 2006 - 01:33:19 CST)
  • Axel Kohlmeyer (Wed Jan 25 2006 - 10:52:41 CST)
  • John Stone (Wed Jan 25 2006 - 10:23:36 CST)
  • Vineet Pande (Wed Jan 25 2006 - 06:21:53 CST)
• can't read "::vmd_pick_event": no such variable
  • Alex Richards (Wed Jun 26 2013 - 11:13:33 CDT)
• can't read "viewplist": no such variable
  • John Stone (Mon Feb 01 2016 - 10:31:41 CST)
  • Dimitrova, Maria (Mon Feb 01 2016 - 09:05:41 CST)
• Can't read DCD files generated using NAMD.
  • Richard Wood (Tue Jun 21 2016 - 06:12:17 CDT)
  • Richard Wood (Mon Jun 20 2016 - 07:47:38 CDT)
  • Richard Wood (Sun Jun 19 2016 - 08:42:21 CDT)
  • Richard Wood (Sat Jun 18 2016 - 09:20:09 CDT)
  • Richard Wood (Fri Jun 17 2016 - 05:51:42 CDT)
  • John Stone (Thu Jun 16 2016 - 19:39:05 CDT)
  • Richard Wood (Thu Jun 16 2016 - 19:17:04 CDT)
  • Richard Wood (Thu Jun 16 2016 - 16:53:11 CDT)
  • John Stone (Thu Jun 16 2016 - 15:02:42 CDT)
  • Richard Wood (Thu Jun 16 2016 - 11:12:53 CDT)
• can't read pdb file
  • Mary Lowe (Sun Mar 25 2007 - 08:26:31 CDT)
  • John Stone (Sat Mar 24 2007 - 00:52:55 CDT)
  • Mary Lowe (Fri Mar 23 2007 - 21:40:18 CDT)
• can't see all frames in XYZ file
  • John Stone (Thu Jun 30 2005 - 14:03:37 CDT)
  • Valere Chen (Wed Jun 29 2005 - 14:42:50 CDT)
• Can't set graphics window position to 0,0
  • John Stone (Thu Mar 29 2012 - 10:20:27 CDT)
  • Christoph Willing (Tue Mar 27 2012 - 18:17:10 CDT)
• can't use arrow key in vmd -disp text mode
  • Xinqiang Ding (Sun Nov 09 2014 - 11:00:14 CST)
  • Axel Kohlmeyer (Sat Nov 08 2014 - 18:19:50 CST)
  • Joaquim Rui de Castro Rodrigues (Sat Nov 08 2014 - 18:24:19 CST)
  • Xinqiang Ding (Sat Nov 08 2014 - 16:46:28 CST)
• Cannot find "cionize plugin" in VMD
  • John Stone (Wed Jul 21 2010 - 16:22:05 CDT)
  • Parisa Akhski (Wed Jul 21 2010 - 13:31:39 CDT)
  • John Stone (Tue Jul 20 2010 - 14:09:37 CDT)
  • John Stone (Tue Jul 20 2010 - 12:42:15 CDT)
  • Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
  • John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
  • Parisa Akhski (Fri Jul 16 2010 - 14:26:59 CDT)
• cannot find PSF and PDB
  • John Stone (Mon Sep 16 2013 - 23:59:51 CDT)
  • Rejwan (Sun Sep 15 2013 - 13:04:14 CDT)
• cannot ionize coarse-grained system
  • John Stone (Fri May 03 2013 - 15:45:09 CDT)
  • Josh Vermaas (Wed May 01 2013 - 15:40:40 CDT)
  • Ф¸»¹ó (Wed May 01 2013 - 14:25:37 CDT)
• Cannot load file for SASA analysis
  • Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
• Cannot load Gromos96 trajectory file (attached)
  • Axel Kohlmeyer (Mon Oct 17 2005 - 19:37:14 CDT)
  • John Stone (Mon Oct 17 2005 - 17:11:32 CDT)
  • Stanley Lan (Mon Oct 17 2005 - 16:26:17 CDT)
• Cannot merge psf and pdb files using psfgen
  • Ern Ong (Wed Feb 13 2019 - 22:20:53 CST)
  • Vermaas, Joshua (Wed Feb 13 2019 - 09:55:21 CST)
  • Ern Ong (Wed Feb 13 2019 - 05:12:41 CST)
  • Ern Ong (Wed Feb 13 2019 - 03:52:42 CST)
• Cannot open parm7 file through tcl script, but can open via graphic interface
  • Fernando Amrein (Mon Mar 27 2023 - 19:15:54 CDT)
• cannot open vmd
  • Axel Kohlmeyer (Fri Jan 25 2013 - 02:28:15 CST)
  • ragesh c (Fri Jan 25 2013 - 00:22:50 CST)
• Cannot perform RMSD analysis
  • John Stone (Wed Apr 02 2008 - 23:53:41 CDT)
  • Maria Sanchez Farran (Wed Apr 02 2008 - 07:49:55 CDT)
• Cannot read MSMS data files
  • John Stone (Tue Jun 22 2010 - 11:37:48 CDT)
  • John Stone (Mon Jun 21 2010 - 16:00:36 CDT)
  • Jayne Wallace (Mon Jun 21 2010 - 09:12:07 CDT)
• Cannot read MSMS facet file
  • BIN ZHANG (Mon Feb 16 2009 - 17:05:31 CST)
  • John Stone (Mon Feb 16 2009 - 00:27:26 CST)
  • BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
• Cannot Remote Display on Ububtu
  • Christian Wohlschlager (Tue Sep 22 2015 - 00:54:34 CDT)
• Cannot Remote Display on Ubuntu
  • Christian Wohlschlager (Tue Sep 22 2015 - 02:30:12 CDT)
• Cannot run IED! :(
  • John Stone (Thu Aug 03 2006 - 11:30:01 CDT)
  • Peng Tao (Thu Aug 03 2006 - 11:23:03 CDT)
  • John Stone (Thu Aug 03 2006 - 10:40:15 CDT)
  • Axel Kohlmeyer (Thu Aug 03 2006 - 10:37:14 CDT)
  • Peng Tao (Thu Aug 03 2006 - 10:00:30 CDT)
  • Peng Tao (Thu Aug 03 2006 - 09:47:21 CDT)
  • Peng Tao (Thu Aug 03 2006 - 09:04:00 CDT)
  • John Stone (Wed Aug 02 2006 - 21:53:55 CDT)
  • Peng Tao (Wed Aug 02 2006 - 21:13:04 CDT)
• Cannot show the simulation box
  • John Stone (Thu Aug 31 2017 - 17:34:57 CDT)
  • lan hoa Trinh (Thu Aug 31 2017 - 17:51:12 CDT)
  • lan hoa Trinh (Thu Aug 31 2017 - 17:21:01 CDT)
• Cannot start CAVE display
  • John Stone (Fri Aug 16 2002 - 11:32:42 CDT)
  • Pawel Kedzierski (Thu Aug 15 2002 - 23:00:42 CDT)
  • John Stone (Tue Aug 13 2002 - 15:15:27 CDT)
  • Pawel Kedzierski (Tue Aug 13 2002 - 15:20:17 CDT)
• Cannot start VMD in background from a script
  • John Stone (Mon Jun 23 2014 - 09:51:14 CDT)
  • Jim (Sat Jun 21 2014 - 11:08:51 CDT)
• cannot visualize GROMACS trajectories in VMD 1.9.4 on MacOS Big Sur
  • Davide Marchi (Tue Mar 16 2021 - 13:33:02 CDT)
  • John Stone (Tue Mar 16 2021 - 11:48:14 CDT)
  • Chang, Christopher (Tue Mar 16 2021 - 10:54:00 CDT)
  • alberto (Tue Mar 16 2021 - 06:37:37 CDT)
  • Davide Marchi (Tue Mar 16 2021 - 05:48:35 CDT)
• Cannot write parm7 file with type parm7
  • Prathit Chatterjee (Thu Jul 14 2022 - 08:54:37 CDT)
• cant connect Novint Falcon with VMD
  • John Stone (Fri Aug 13 2010 - 15:18:58 CDT)
  • Axel Kohlmeyer (Fri Aug 13 2010 - 14:30:28 CDT)
  • John Stone (Fri Aug 13 2010 - 12:55:06 CDT)
  • Axel Kohlmeyer (Fri Aug 13 2010 - 00:03:51 CDT)
  • Shawn (Thu Aug 12 2010 - 15:25:26 CDT)
  • John Stone (Thu Aug 12 2010 - 15:00:17 CDT)
  • Shawn (Thu Aug 12 2010 - 14:48:31 CDT)
  • Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
  • Axel Kohlmeyer (Thu Aug 12 2010 - 14:37:14 CDT)
  • Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
  • Shawn (Thu Aug 12 2010 - 13:21:56 CDT)
• cant find output file from tachyon render.
  • Ajasja LjubetiÄ� (Thu Mar 27 2014 - 15:41:47 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 15:55:28 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Mar 27 2014 - 14:52:23 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 14:56:12 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 14:30:05 CDT)
  • Josh Vermaas (Thu Mar 27 2014 - 13:12:33 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 12:07:45 CDT)
  • Massimiliano Porrini (Thu Mar 27 2014 - 11:51:33 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 08:50:56 CDT)
• cant open .car file
  • Erik (Mon Dec 03 2012 - 21:28:30 CST)
  • John Stone (Sat Dec 01 2012 - 22:41:24 CST)
  • Erik (Fri Nov 30 2012 - 12:25:30 CST)
• Cant start IED
  • Axel Kohlmeyer (Tue Dec 01 2009 - 07:26:44 CST)
  • Thomas Steinbrecher (Tue Dec 01 2009 - 05:00:15 CST)
• Cant use NAMDplot to plot
  • Artur Duque Rossi (Sat Nov 24 2018 - 16:34:18 CST)
• capping or patching protein ends
  • Peter Freddolino (Thu Mar 03 2011 - 17:51:20 CST)
  • Tim Travers (Thu Mar 03 2011 - 15:13:33 CST)
  • Mark Cunningham (Thu Mar 03 2011 - 14:32:08 CST)
  • Tim Travers (Thu Mar 03 2011 - 11:39:11 CST)
  • Ashlynne Monroe (Thu Mar 03 2011 - 10:40:37 CST)
• Capture query data
  • Jérôme Hénin (Fri Dec 02 2016 - 06:52:20 CST)
  • Eric Smoll (Fri Dec 02 2016 - 06:20:52 CST)
• capturing box dimensions from amber coordinate files
  • John Stone (Wed Apr 06 2005 - 13:33:12 CDT)
  • jbaucom_at_unity.ncsu.edu (Wed Apr 06 2005 - 12:39:08 CDT)
• Carbon Nanotube Interaction with Protein Simulation NAMD VMD
  • Tim Lo (Thu Sep 18 2014 - 20:19:10 CDT)
  • Aryan Vahedi-Faridi (Thu Sep 18 2014 - 14:44:34 CDT)
• Card for VMD with OpenGL & Linux
  • John Stone (Wed Apr 11 2001 - 01:31:59 CDT)
  • Dominik Horinek (Mon Apr 09 2001 - 17:09:45 CDT)
  • John Stone (Mon Apr 09 2001 - 16:46:34 CDT)
  • Dominik Horinek (Mon Apr 09 2001 - 16:38:40 CDT)
• Cardiolipin residue names changed by vmd
  • Rose, Stuart Wallace (Tue Aug 05 2014 - 19:30:02 CDT)
• carnal output trajectory
  • Sanjeev B.S. (Wed Oct 30 2002 - 07:50:45 CST)
  • Stéphane Teletchéa (Wed Oct 30 2002 - 07:50:19 CST)
  • Vlad Cojocaru (Wed Oct 30 2002 - 07:25:36 CST)
  • Vlad Cojocaru (Fri Oct 25 2002 - 04:50:55 CDT)
  • Margaret Cheung (Thu Oct 24 2002 - 15:57:50 CDT)
  • Vlad Cojocaru (Thu Oct 24 2002 - 15:07:35 CDT)
• Cartesian coordinates to polar coordinates
  • Axel Kohlmeyer (Wed Aug 15 2012 - 01:50:57 CDT)
  • Ganesh Kamath (Tue Aug 14 2012 - 17:20:30 CDT)
• cartoon of alpha carbon trace
  • Knapp Bernhard (Fri Nov 14 2014 - 10:24:32 CST)
  • John Stone (Thu Nov 13 2014 - 11:31:45 CST)
  • Knapp Bernhard (Thu Nov 13 2014 - 05:39:06 CST)
  • John Stone (Wed Nov 12 2014 - 10:35:55 CST)
  • Knapp Bernhard (Wed Nov 12 2014 - 08:00:27 CST)
• cartoon problems (encore)
  • John Stone (Sat Feb 03 2007 - 15:39:17 CST)
  • christopher (Sat Feb 03 2007 - 15:29:56 CST)
• Cartoon represenation for non-standard residue
  • Simon Dürr (Tue Aug 02 2016 - 09:53:50 CDT)
  • Simon Dürr (Tue Aug 02 2016 - 07:01:01 CDT)
• cartoon representation
  • John Stone (Fri May 30 2003 - 15:46:30 CDT)
  • Tyler Luchko (Fri May 30 2003 - 15:21:40 CDT)
  • John Stone (Fri Nov 15 2002 - 09:58:43 CST)
  • Robert Campbell (Fri Nov 15 2002 - 09:58:02 CST)
  • John Stone (Thu Nov 14 2002 - 16:02:48 CST)
  • stefano ricagno (Wed Nov 13 2002 - 06:27:33 CST)
• Cartoon representation for large molecules
  • John Stone (Fri Jan 02 2004 - 13:29:32 CST)
  • Gadi Oron (Thu Jan 01 2004 - 03:52:04 CST)
  • Aurore Zyto (Wed Dec 31 2003 - 15:43:11 CST)
• Cartoon representation in VMD with amber netcd file
  • John Stone (Mon May 08 2023 - 00:12:26 CDT)
  • Hoang, Oanh Tu (Fri May 05 2023 - 05:41:15 CDT)
• cartoon representation of 1crn
  • BETTLER Emmanuel (Fri Apr 23 2004 - 11:25:46 CDT)
• cartoon selection
  • John Stone (Tue Mar 14 2006 - 00:27:38 CST)
  • Viswanadham Sridhara (Mon Mar 13 2006 - 13:02:53 CST)
• Cartoons and secondary structure prediction
  • Axel Kohlmeyer (Tue May 03 2011 - 07:05:39 CDT)
  • Francisco José Taberner Sanchis (Tue May 03 2011 - 05:51:24 CDT)
• Catching error info before it shuts down ...
  • John Stone (Wed Feb 23 2005 - 17:37:44 CST)
  • Dallas Warren (Wed Feb 23 2005 - 17:30:39 CST)
  • John Stone (Wed Feb 23 2005 - 16:53:48 CST)
  • Dallas Warren (Wed Feb 23 2005 - 16:49:33 CST)
  • John Stone (Wed Feb 23 2005 - 16:33:17 CST)
  • Dallas Warren (Wed Feb 23 2005 - 16:23:33 CST)
  • John Stone (Wed Feb 23 2005 - 11:19:30 CST)
  • Dallas Warren (Mon Feb 21 2005 - 16:49:50 CST)
  • John Stone (Mon Feb 21 2005 - 11:43:05 CST)
  • Dallas Warren (Mon Feb 21 2005 - 00:02:51 CST)
  • Dallas Warren (Sun Feb 20 2005 - 16:03:51 CST)
  • Brian Bennion (Fri Feb 18 2005 - 10:01:32 CST)
  • Axel Kohlmeyer (Fri Feb 18 2005 - 03:39:48 CST)
  • Dallas Warren (Thu Feb 17 2005 - 23:41:08 CST)
• catdcd
  • Henrik Hariman (Thu Oct 24 2019 - 22:34:12 CDT)
  • Axel Kohlmeyer (Wed Jun 22 2016 - 07:21:37 CDT)
  • Paul Schlesinger (Wed Jun 22 2016 - 06:11:00 CDT)
  • John Stone (Fri Oct 23 2009 - 13:44:52 CDT)
  • Eric H. Lee (Mon Oct 12 2009 - 10:05:09 CDT)
  • Axel Kohlmeyer (Mon Oct 12 2009 - 10:43:42 CDT)
  • Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
  • John Stone (Fri Aug 29 2008 - 01:45:45 CDT)
  • Peter Freddolino (Wed Aug 27 2008 - 22:04:10 CDT)
  • Robert Fenwick (Wed Aug 27 2008 - 12:16:14 CDT)
  • John Stone (Wed Aug 27 2008 - 11:58:58 CDT)
  • Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
  • Axel Kohlmeyer (Mon Apr 14 2008 - 12:08:34 CDT)
  • Richard Swenson (Mon Apr 14 2008 - 13:28:19 CDT)
  • Raul Araya (Mon Apr 14 2008 - 12:01:41 CDT)
  • J. Rui Rodrigues (Wed Jul 13 2005 - 10:14:57 CDT)
  • Francesco Iori (Wed Jul 13 2005 - 04:05:40 CDT)
• catdcd - writing DCD with box info from namdbin and xsc files?
  • Brian Radak (Thu Oct 08 2015 - 10:03:58 CDT)
• catdcd -first
  • Salvatore Mario Cosseddu (Wed Jul 24 2013 - 05:33:12 CDT)
  • R. Charbel MAROUN (Tue Jul 23 2013 - 09:30:01 CDT)
• catDCD 4.0 and xplor
  • John Stone (Tue May 30 2006 - 15:41:02 CDT)
  • Peter Jones (Mon May 29 2006 - 23:23:10 CDT)
• catdcd 5.1 not working from VMD terminal
  • Michail Palaiokostas Avramidis (Tue Jan 27 2015 - 09:20:46 CST)
• catdcd a vmd extension?
  • Axel Kohlmeyer (Tue Jul 23 2013 - 13:09:00 CDT)
  • R. Charbel MAROUN (Tue Jul 23 2013 - 12:09:30 CDT)
• catdcd and velocity dcd file
  • Axel Kohlmeyer (Fri Jul 01 2011 - 10:45:16 CDT)
  • arash azari (Fri Jul 01 2011 - 10:06:11 CDT)
• CatDCD Desmond Support
  • John Stone (Fri Oct 23 2009 - 13:44:15 CDT)
  • John Stone (Wed Oct 07 2009 - 13:24:00 CDT)
  • andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
• catdcd error
  • Ashar Malik (Sat Jun 15 2019 - 17:05:15 CDT)
  • Roshan Shrestha (Sat Jun 15 2019 - 04:02:46 CDT)
  • Dani (Wed Mar 16 2016 - 16:50:47 CDT)
  • Josh Vermaas (Fri Mar 04 2016 - 18:49:23 CST)
  • Chitrak Gupta (Fri Mar 04 2016 - 17:21:47 CST)
  • Daniela Rivas (Wed Mar 02 2016 - 12:11:07 CST)
• catdcd error opening reading index file
  • Francesco Pietra (Sat Jun 23 2018 - 04:11:57 CDT)
• catdcd in VMD
  • Axel Kohlmeyer (Sat Oct 24 2015 - 10:57:48 CDT)
  • JhonY. I. (Sat Oct 24 2015 - 10:26:53 CDT)
• catdcd in Windows
  • John Stone (Wed Sep 09 2009 - 13:38:54 CDT)
  • Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
• CatDCD on Windows
  • Ashar Malik (Mon Sep 22 2014 - 19:35:07 CDT)
  • Josh Vermaas (Mon Sep 22 2014 - 19:08:55 CDT)
  • Ashar Malik (Mon Sep 22 2014 - 18:07:48 CDT)
• catdcd plugin for Windows users
  • Ashar Malik (Tue Jan 16 2018 - 01:58:45 CST)
  • Ern Ong (Tue Jan 16 2018 - 00:51:57 CST)
• CatDCD Question
  • Saladino, Alex (Tue Mar 04 2003 - 11:51:10 CST)
• CatDCD refuses to work (mac)
  • Heather Boltz (Mon Jun 13 2016 - 20:13:32 CDT)
  • Heather Boltz (Sun Jun 12 2016 - 07:42:29 CDT)
  • Strahs, Dr. Daniel Bernard (Fri Jun 10 2016 - 23:20:51 CDT)
  • Heather Boltz (Fri Jun 10 2016 - 22:05:39 CDT)
• catdcd usage with Desmond trajectory
  • Irene Newhouse (Wed Aug 25 2010 - 15:33:25 CDT)
  • John Stone (Tue Aug 24 2010 - 16:44:25 CDT)
  • Irene Newhouse (Thu Aug 19 2010 - 22:26:26 CDT)
  • John Stone (Thu Aug 19 2010 - 20:32:23 CDT)
  • Irene Newhouse (Thu Aug 19 2010 - 16:19:10 CDT)
• catdcd vs readdcd.h error checking
  • Brian Bennion (Sat Aug 20 2005 - 11:22:16 CDT)
  • Justin Gullingsrud (Fri Aug 19 2005 - 18:56:52 CDT)
  • Brian Bennion (Fri Aug 19 2005 - 11:53:55 CDT)
• CatDCD windows binaries
  • Axel Kohlmeyer (Fri Jul 19 2013 - 04:56:00 CDT)
• CatDcd Windows Version
  • NAMITA BHADRA (Wed Aug 17 2011 - 23:52:28 CDT)
• catDCD- convert DCD format
  • John Stone (Wed Aug 13 2008 - 10:58:21 CDT)
  • Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
• catdcd.LINUX
  • John Stone (Thu Feb 16 2006 - 14:17:03 CST)
  • John Stone (Thu Feb 16 2006 - 13:32:27 CST)
  • lily jin (Thu Feb 16 2006 - 13:24:16 CST)
• Catdcd?
  • Anirban Ghosh (Mon Oct 20 2008 - 06:31:25 CDT)
  • bo liu (Fri Oct 17 2008 - 00:01:59 CDT)
  • Axel Kohlmeyer (Thu Oct 16 2008 - 13:23:14 CDT)
  • Christopher Gillespie (Thu Oct 16 2008 - 12:25:42 CDT)
  • Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
• cave
  • Ahmed Nawar (Tue Nov 27 2007 - 01:00:42 CST)
  • John Stone (Mon Nov 26 2007 - 11:44:33 CST)
  • Ahmed Nawar (Mon Nov 26 2007 - 06:12:41 CST)
  • Axel Kohlmeyer (Mon Nov 26 2007 - 04:28:18 CST)
  • Ahmed Nawar (Mon Nov 26 2007 - 00:54:23 CST)
  • Axel Kohlmeyer (Sun Nov 25 2007 - 12:58:47 CST)
  • John Stone (Sun Nov 25 2007 - 12:54:56 CST)
  • Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
  • John Stone (Thu Nov 22 2007 - 10:21:30 CST)
  • Ahmed Nawar (Thu Nov 22 2007 - 06:09:24 CST)
  • John Stone (Wed Sep 07 2005 - 15:47:10 CDT)
  • Hai-Jun Su (Wed Sep 07 2005 - 15:35:10 CDT)
  • Hai-Jun Su (Wed Sep 07 2005 - 10:30:05 CDT)
  • Dan Strahs (Wed Sep 07 2005 - 08:59:22 CDT)
  • John Stone (Tue Sep 06 2005 - 23:32:18 CDT)
  • Hai-Jun Su (Tue Sep 06 2005 - 23:20:07 CDT)
• CAVE & Vmd
  • Christian Wohlschlager (Fri Jul 27 2007 - 01:45:45 CDT)
  • John Stone (Thu Jul 26 2007 - 16:06:00 CDT)
  • Christian Wohlschlager (Wed Jul 25 2007 - 08:21:27 CDT)
  • John Stone (Tue Jul 17 2007 - 11:46:13 CDT)
  • Christian Wohlschlager (Fri Jul 06 2007 - 02:06:54 CDT)
• CAVE and Flystick control
  • John Stone (Fri May 27 2011 - 14:41:03 CDT)
  • John Stone (Wed May 04 2011 - 15:15:20 CDT)
  • David Joiner (Wed May 04 2011 - 14:52:34 CDT)
• Cave and usr keys defined in tcl
  • John Stone (Wed Feb 28 2007 - 00:00:22 CST)
  • Christian Wohlschlager (Tue Feb 27 2007 - 05:46:38 CST)
• CAVE on OS X
  • John Stone (Tue Dec 14 2004 - 09:44:54 CST)
  • Ebrahim Mayat (Mon Dec 13 2004 - 02:57:27 CST)
• CAVE Question
  • John Stone (Mon Dec 11 2006 - 10:21:12 CST)
  • Christian Wohlschlager (Mon Dec 11 2006 - 00:28:12 CST)
  • John Stone (Fri Dec 01 2006 - 10:53:06 CST)
  • Christian Wohlschlager (Thu Nov 30 2006 - 08:22:46 CST)
  • John Stone (Wed Nov 29 2006 - 14:25:37 CST)
  • Christian Wohlschlager (Tue Nov 28 2006 - 08:16:48 CST)
  • Axel Kohlmeyer (Mon Nov 27 2006 - 18:47:22 CST)
  • John Stone (Mon Nov 27 2006 - 14:50:57 CST)
  • Christian Wohlschlager (Mon Nov 27 2006 - 02:39:04 CST)
• CAVE Sensor Question
  • John Stone (Tue Dec 19 2006 - 01:10:20 CST)
  • Christian Wohlschlager (Mon Dec 18 2006 - 01:28:53 CST)
• cavetracker
  • John Stone (Fri Jan 18 2002 - 01:32:48 CST)
  • Derek R. Ploor (Wed Jan 16 2002 - 15:00:31 CST)
• cavity/pocket representation
  • Luis Guillermo Cota Preciado (Thu May 04 2006 - 12:48:53 CDT)
  • Ran Friedman (Thu May 04 2006 - 03:17:24 CDT)
  • John Stone (Tue May 02 2006 - 13:05:12 CDT)
  • Wei Fu (Linda) (Tue May 02 2006 - 13:50:38 CDT)
• CCL: show ruler in VMD
  • John Stone (Fri Jun 01 2007 - 14:11:07 CDT)
• CCL:md rookie update
  • Konrad Hinsen (Thu Jan 08 1998 - 06:50:36 CST)
• CCL:md rookie update (fwd)
  • root (Thu Jan 08 1998 - 12:44:37 CST)
  • root (Thu Jan 08 1998 - 12:41:23 CST)
  • root (Thu Jan 08 1998 - 12:41:39 CST)
• CCL:NAMD failure on Berendsen pressure scheme
  • Ioana Cozmuta (Thu Jul 31 2003 - 13:03:24 CDT)
  • Ioana Cozmuta (Wed Jul 30 2003 - 11:51:49 CDT)
• CCL:program for viewing MD
  • Barry Isralewitz (Mon Oct 23 2000 - 11:55:02 CDT)
• ccp4 in vmd
  • John Stone (Wed Dec 02 2009 - 22:41:17 CST)
  • pebblepeddle_at_gmail.com (Wed Dec 02 2009 - 21:55:58 CST)
• CD spectra
  • Prof. Eddie (Fri Feb 19 2016 - 10:34:02 CST)
• CDROM/Windows/Linux
  • Surjit Dixit (Fri Sep 20 2002 - 07:29:47 CDT)
  • Stéphane Teletchéa (Fri Sep 20 2002 - 04:24:12 CDT)
  • John Stone (Thu Sep 19 2002 - 15:16:54 CDT)
  • Surjit Dixit (Thu Sep 19 2002 - 14:35:46 CDT)
• CellPack
  • McGuire, Kelly (Fri May 04 2018 - 11:06:12 CDT)
  • John Stone (Fri May 04 2018 - 11:02:02 CDT)
  • Ajasja LjubetiÄ� (Fri May 04 2018 - 03:17:20 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 20:41:58 CDT)
  • John Stone (Thu May 03 2018 - 20:35:46 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 20:11:39 CDT)
  • Vermaas, Joshua (Thu May 03 2018 - 19:57:08 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 18:53:18 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 11:20:26 CDT)
  • John Stone (Thu May 03 2018 - 10:22:22 CDT)
  • McGuire, Kelly (Wed May 02 2018 - 23:03:31 CDT)
• Center a trajectory
  • Ajasja LjubetiÄ� (Tue Jul 16 2013 - 11:27:16 CDT)
  • Cathy Kelly (Tue Jul 16 2013 - 11:15:03 CDT)
  • Ajasja LjubetiÄ� (Tue Jul 16 2013 - 10:57:40 CDT)
  • Andrei Tudor (Tue Jul 16 2013 - 09:18:15 CDT)
• Center camera rotation on a molid
  • TUBIANA Thibault CNRS (Thu Mar 02 2017 - 04:00:03 CST)
• center command
  • Ioana Cozmuta (Fri May 23 2003 - 17:02:51 CDT)
• center of mass
  • John Stone (Tue Jul 09 2013 - 13:09:43 CDT)
  • Grace Brannigan (Fri Jul 05 2013 - 14:26:47 CDT)
  • Jorgen Simonsen (Fri Jul 05 2013 - 13:59:18 CDT)
  • Josh Vermaas (Fri Jul 05 2013 - 13:37:32 CDT)
  • Ajasja LjubetiÄ� (Fri Jul 05 2013 - 13:18:19 CDT)
  • Jérôme Hénin (Fri Jul 05 2013 - 12:17:28 CDT)
  • Jorgen Simonsen (Fri Jul 05 2013 - 11:25:55 CDT)
  • Axel Kohlmeyer (Mon Jan 12 2009 - 14:37:05 CST)
  • Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
• center of mass 4 rdf VMD
  • alberto (Thu Mar 07 2019 - 09:42:48 CST)
• center of mass position
  • John Stone (Tue Aug 24 2004 - 10:03:40 CDT)
  • Andre Farias de Moura (Tue Aug 24 2004 - 07:07:24 CDT)
• Center of Mass RMSD in a trajectory
  • Felipe Merino (Mon Apr 03 2017 - 03:51:46 CDT)
  • Daniela Rivas (Mon Apr 03 2017 - 03:59:30 CDT)
  • Daniela Rivas (Mon Apr 03 2017 - 02:58:54 CDT)
• center of unit cell
  • Bhargava (Thu Apr 08 2010 - 11:10:51 CDT)
  • Axel Kohlmeyer (Thu Apr 08 2010 - 11:13:45 CDT)
  • Yinglong Miao (Thu Apr 08 2010 - 10:10:17 CDT)
• center scaling and rotation
  • John Stone (Fri Jun 22 2007 - 17:25:01 CDT)
  • Tim Meyer (Thu Jun 21 2007 - 09:35:40 CDT)
• center selection problem
  • Justin Gullingsrud (Sat Apr 10 2004 - 13:48:19 CDT)
  • Mike McCallum (Sat Apr 10 2004 - 00:17:26 CDT)
• Centering an atom over the length of a trajectory
  • Vermaas, Joshua (Tue Feb 26 2019 - 16:33:31 CST)
  • Bassam Haddad (Tue Feb 26 2019 - 16:25:15 CST)
  • Bassam Haddad (Tue Feb 26 2019 - 16:30:29 CST)
  • Nick Palmer (Tue Feb 26 2019 - 15:11:55 CST)
• Centering GPCR onto Lipid Bilayer
  • Akshay Patny (Tue Sep 19 2006 - 16:19:59 CDT)
  • Ting Wang (Tue Sep 19 2006 - 13:28:40 CDT)
  • Akshay Patny (Mon Sep 18 2006 - 14:28:35 CDT)
• Centering of the view on one atom
  • Axel Kohlmeyer (Wed Mar 31 2004 - 14:12:51 CST)
  • CHAUMONT Alain (Wed Mar 31 2004 - 09:42:09 CST)
• centering problem in salvation box
  • John Stone (Tue Jan 14 2014 - 09:45:43 CST)
  • Ramin Ekhteiari (Fri Jan 10 2014 - 12:01:22 CST)
• centering problem in trajectory tool
  • Markus K. Dahlgren (Mon Oct 17 2011 - 18:46:35 CDT)
  • Zumot, Elia Nabil (Mon Oct 17 2011 - 17:58:49 CDT)
  • Markus K. Dahlgren (Mon Oct 17 2011 - 17:46:26 CDT)
  • Zumot, Elia Nabil (Mon Oct 10 2011 - 15:34:54 CDT)
  • Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
  • Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
  • Markus K. Dahlgren (Mon Oct 10 2011 - 08:59:11 CDT)
• centering seection on screen
  • Lubos Vrbka (Thu Apr 17 2003 - 10:38:25 CDT)
  • B. Bennion (Thu Apr 17 2003 - 09:50:32 CDT)
  • Lubos Vrbka (Thu Apr 17 2003 - 05:28:46 CDT)
• centering selection on screen
  • John Stone (Thu Apr 17 2003 - 12:38:35 CDT)
• centering the molecule
  • John Stone (Mon Oct 03 2005 - 16:32:10 CDT)
  • Jeffrey Tseng (Sun Oct 02 2005 - 17:53:00 CDT)
• Centering water molecules
  • Mihaela Drenscko (Wed Nov 27 2013 - 06:56:17 CST)
  • John Stone (Tue Nov 26 2013 - 19:04:21 CST)
  • Mihaela Drenscko (Tue Nov 26 2013 - 18:26:51 CST)
• CentOS 6.4 crashed right after starting vmd
  • John Stone (Thu Apr 16 2015 - 11:33:02 CDT)
  • ASHISH BIHANI (Thu Apr 16 2015 - 00:57:51 CDT)
• Centre of gravity for movies
  • John Stone (Tue Sep 17 2002 - 11:25:07 CDT)
  • Mark Hilge (Fri Sep 13 2002 - 12:21:14 CDT)
• Certain combinations of X-server and X-client do not allow VMD to start
  • Jiri Polach (Tue Sep 17 2013 - 08:02:23 CDT)
  • John Stone (Mon Sep 16 2013 - 23:56:11 CDT)
  • Clarinet (Mon Sep 16 2013 - 09:40:08 CDT)
• CG bead definition
  • Anton Arkhipov (Mon Aug 31 2009 - 23:24:05 CDT)
  • Anton Arkhipov (Mon Nov 24 2008 - 18:36:23 CST)
  • BIN ZHANG (Mon Nov 24 2008 - 18:24:35 CST)
  • Anton Arkhipov (Mon Nov 24 2008 - 16:43:28 CST)
  • BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
• CG Builder
  • Axel Kohlmeyer (Sun Jan 30 2011 - 08:54:59 CST)
  • mohamad rahimi (Sun Jan 30 2011 - 06:14:03 CST)
  • Axel Kohlmeyer (Sun Jan 30 2011 - 05:53:54 CST)
  • mohamad rahimi (Sun Jan 30 2011 - 03:31:23 CST)
  • Roman Petrenko (Mon Nov 09 2009 - 15:01:26 CST)
  • Francesco Pietra (Mon Nov 09 2009 - 14:06:44 CST)
• CG builder for martini force field
  • Giacomo Fiorin (Fri May 26 2017 - 01:07:00 CDT)
  • Karteek Kumar (Thu May 25 2017 - 22:31:46 CDT)
  • Peter Freddolino (Thu May 25 2017 - 22:35:38 CDT)
  • Peter Freddolino (Thu May 25 2017 - 22:10:03 CDT)
  • Peter Freddolino (Sat May 13 2017 - 21:36:21 CDT)
  • Peter Freddolino (Fri May 12 2017 - 15:33:54 CDT)
  • Karteek Kumar (Fri May 12 2017 - 10:37:45 CDT)
• CG builder in script
  • János Szövérfi (Wed Jun 14 2017 - 07:16:03 CDT)
  • Axel Kohlmeyer (Wed Jun 14 2017 - 05:53:26 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 05:50:24 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 05:45:44 CDT)
  • Axel Kohlmeyer (Wed Jun 14 2017 - 05:31:14 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 04:58:06 CDT)
  • Fotis Baltoumas (Wed Jun 14 2017 - 04:50:49 CDT)
  • Ajasja LjubetiÄ� (Wed Jun 14 2017 - 04:42:40 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 03:26:06 CDT)
• CG definition of POPS
  • Steven Neumann (Sun Aug 03 2014 - 23:31:23 CDT)
• cg ionization
  • Sibel Cakan (Sun Sep 19 2010 - 15:28:14 CDT)
  • Sibel Cakan (Sun Sep 19 2010 - 15:16:06 CDT)
• CG lipid bilayer vmd 1.8.7
  • Anton Arkhipov (Mon Dec 07 2009 - 10:15:53 CST)
  • Francesco Pietra (Sun Dec 06 2009 - 13:24:06 CST)
  • Anton Arkhipov (Sun Dec 06 2009 - 00:35:46 CST)
  • Peter Freddolino (Thu Dec 03 2009 - 05:31:58 CST)
  • Francesco Pietra (Thu Dec 03 2009 - 02:57:24 CST)
  • BIN ZHANG (Wed Dec 02 2009 - 15:17:05 CST)
  • BIN ZHANG (Wed Dec 02 2009 - 14:03:58 CST)
  • Francesco Pietra (Wed Dec 02 2009 - 12:13:53 CST)
• CG Map Tool Syntax Error
  • Anton Arkhipov (Wed Nov 05 2008 - 16:16:59 CST)
  • Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
• CG Martini File for Cholesterol
  • Fotis Baltoumas (Mon May 20 2019 - 11:07:44 CDT)
  • Alexander Adams (Mon May 20 2019 - 10:45:50 CDT)
• CG- CNT
  • Axel Kohlmeyer (Sat Jan 12 2013 - 10:02:04 CST)
  • hamid mosaddeghi (Sat Jan 12 2013 - 06:05:02 CST)
• cg_bonds.tcl
  • mohammad agha (Sat May 19 2012 - 15:56:00 CDT)
  • Ajasja LjubetiÄ� (Sat May 19 2012 - 15:07:20 CDT)
  • mohammad agha (Sat May 19 2012 - 00:32:37 CDT)
• cg_ionize
  • Peter Freddolino (Mon Sep 20 2010 - 20:34:08 CDT)
  • Sibel Cakan (Sun Sep 19 2010 - 16:37:15 CDT)
• CG_MD temperature
  • BIN ZHANG (Thu Feb 03 2011 - 01:30:15 CST)
  • Sibel Cakan (Wed Feb 02 2011 - 17:56:12 CST)
• cgenff atom type issue
  • Stefano Guglielmo (Sun May 24 2020 - 05:51:55 CDT)
  • Josh Vermaas (Fri May 22 2020 - 13:16:15 CDT)
  • Krishna Vkm (Fri May 22 2020 - 12:40:29 CDT)
  • Stefano Guglielmo (Fri May 22 2020 - 11:50:36 CDT)
• CGenFF atom types
  • Axel Kohlmeyer (Sun Mar 14 2010 - 21:19:30 CDT)
  • Ziemys, Arturas (Sun Mar 14 2010 - 19:44:53 CDT)
• cgtools
  • Gurunath Katagi (Wed Jan 01 2014 - 04:08:07 CST)
• CGTools error: atom select: cannot parse selection text...
  • Kirby Vandivort (Tue Sep 15 2009 - 11:32:35 CDT)
  • Kirby Vandivort (Mon Sep 14 2009 - 14:16:24 CDT)
  • wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
• CGTools Plugin
  • Peter Freddolino (Sat Jan 20 2007 - 11:17:00 CST)
  • Ugur Akgun (Fri Jan 19 2007 - 13:59:31 CST)
• CGTools with pdb and top files
  • Kirby Vandivort (Tue Apr 02 2013 - 16:36:47 CDT)
  • Dong Luo (Tue Apr 02 2013 - 11:29:46 CDT)
  • WuChaofu (Mon Apr 01 2013 - 23:59:51 CDT)
  • WuChaofu (Mon Apr 01 2013 - 17:52:08 CDT)
  • Dong Luo (Mon Apr 01 2013 - 10:39:56 CDT)
  • WuChaofu (Mon Apr 01 2013 - 02:55:13 CDT)
• chain fails
  • John Stone (Wed Mar 08 2006 - 16:24:21 CST)
  • Yu Chen (Fri Feb 10 2006 - 14:52:43 CST)
• chain identifier change in the pdb files generated by the "solvate" and "Add Ions" plugin
  • sunyeping (Mon Oct 10 2016 - 21:04:45 CDT)
  • Stefan Doerr (Tue Oct 04 2016 - 09:25:39 CDT)
  • John Stone (Mon Oct 03 2016 - 16:10:19 CDT)
  • sunyeping (Mon Sep 26 2016 - 21:46:54 CDT)
• chain seprating and jumping because of periodic bound
  • sunyeping (Sat Feb 11 2017 - 13:45:42 CST)
• Chains x, y, and z cannot be selected
  • Charles McAnany (Wed Aug 31 2022 - 14:27:29 CDT)
• Change atom color dynamically.
  • Axel Kohlmeyer (Wed Jun 05 2013 - 03:14:02 CDT)
  • amit kunte (Wed Jun 05 2013 - 02:12:49 CDT)
• Change Atom serial Atom
  • Georcki Ropon (Thu Nov 18 2021 - 11:07:13 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:57:10 CST)
  • Vermaas, Josh (Wed Nov 17 2021 - 20:50:42 CST)
  • Axel Kohlmeyer (Wed Nov 17 2021 - 20:52:39 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:42:25 CST)
  • Vermaas, Josh (Wed Nov 17 2021 - 20:34:02 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:18:09 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:22:44 CST)
  • Axel Kohlmeyer (Wed Nov 17 2021 - 20:19:32 CST)
  • Axel Kohlmeyer (Wed Nov 17 2021 - 20:14:48 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 19:04:32 CST)
• Change atom types in topotools
  • Giacomo Fiorin (Thu Sep 14 2017 - 09:05:38 CDT)
  • Rajesh (Thu Sep 14 2017 - 08:07:12 CDT)
• change axes name
  • John Stone (Tue Feb 19 2008 - 10:59:23 CST)
  • massimo camarda (Mon Feb 18 2008 - 11:57:35 CST)
• Change bond per atom limit of VMD
  • Dhritiman Talukdar (Mon Jan 12 2015 - 13:40:49 CST)
  • John Stone (Mon Jan 12 2015 - 10:40:06 CST)
  • Dhritiman Talukdar (Wed Jan 07 2015 - 14:53:49 CST)
  • Dhritiman Talukdar (Wed Jan 07 2015 - 03:28:37 CST)
  • Axel Kohlmeyer (Wed Jan 07 2015 - 02:44:03 CST)
  • Dhritiman Talukdar (Wed Jan 07 2015 - 01:21:31 CST)
  • Axel Kohlmeyer (Tue Jan 06 2015 - 23:24:11 CST)
  • Dhritiman Talukdar (Tue Jan 06 2015 - 22:41:41 CST)
  • Axel Kohlmeyer (Tue Jan 06 2015 - 14:23:56 CST)
  • Josh Vermaas (Tue Jan 06 2015 - 13:32:09 CST)
  • Dhritiman Talukdar (Tue Jan 06 2015 - 12:15:21 CST)
  • Axel Kohlmeyer (Tue Jan 06 2015 - 10:24:19 CST)
  • John Stone (Tue Jan 06 2015 - 10:23:47 CST)
  • Dhritiman Talukdar (Tue Jan 06 2015 - 09:36:52 CST)
• Change browsing directory in mac
  • John Stone (Mon Nov 28 2016 - 00:24:53 CST)
  • Estefania Gonzalez Solveyra (Fri Nov 18 2016 - 11:31:28 CST)
• change color from script
  • John Stone (Fri Oct 15 2004 - 10:44:47 CDT)
  • S.G.Falkovich (Wed Oct 13 2004 - 04:27:06 CDT)
• Change color of drawn object
  • Axel Kohlmeyer (Sun Oct 11 2015 - 09:53:37 CDT)
  • Ebert Maximilian (Sat Oct 10 2015 - 20:34:33 CDT)
  • Ebert Maximilian (Thu Oct 08 2015 - 13:48:07 CDT)
  • John Stone (Thu Oct 08 2015 - 14:11:16 CDT)
• Change Color Scale
  • Joshua D. Moore (Wed Dec 21 2011 - 15:49:50 CST)
  • Axel Kohlmeyer (Wed Dec 21 2011 - 15:04:07 CST)
  • John Stone (Wed Dec 21 2011 - 15:09:09 CST)
  • Joshua D. Moore (Wed Dec 21 2011 - 13:57:10 CST)
• Change color scale data range
  • Vermaas, Joshua (Fri Nov 08 2019 - 10:51:39 CST)
  • William Glass (Fri Nov 08 2019 - 04:32:03 CST)
• change color sequence used in label graphs?
  • Mariano Spivak (Mon Mar 29 2021 - 16:52:11 CDT)
  • Carlos Simmerling (Mon Mar 29 2021 - 14:00:55 CDT)
• Change coordinates
  • Axel Kohlmeyer (Thu Nov 24 2011 - 14:42:53 CST)
  • Andrés Morales (Thu Nov 24 2011 - 10:38:15 CST)
  • sajad falsafi (Thu Nov 24 2011 - 06:51:44 CST)
  • Andrés Morales (Thu Nov 24 2011 - 02:14:02 CST)
• change cylinder surface properties
  • Axel Kohlmeyer (Mon Feb 16 2009 - 18:29:11 CST)
  • Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
• change default bond cutoff distance
  • John Stone (Wed Mar 15 2006 - 18:35:02 CST)
  • Weiqiang Wang (Tue Mar 14 2006 - 02:11:22 CST)
  • John Stone (Tue Mar 14 2006 - 00:18:33 CST)
  • Weiqiang Wang (Tue Mar 07 2006 - 15:12:42 CST)
  • John Stone (Tue Mar 07 2006 - 10:55:23 CST)
  • Weiqiang Wang (Tue Mar 07 2006 - 03:25:53 CST)
• change default drawing and coloring method
  • Axel Kohlmeyer (Thu May 25 2006 - 05:06:12 CDT)
  • Habib.Alehossein_at_csiro.au (Wed May 24 2006 - 22:52:36 CDT)
  • Jian Zou (Wed May 24 2006 - 20:44:06 CDT)
  • John Stone (Wed May 24 2006 - 16:28:51 CDT)
  • Jian Zou (Tue May 23 2006 - 22:16:49 CDT)
  • John Stone (Tue May 23 2006 - 13:19:13 CDT)
  • John Stone (Tue May 23 2006 - 13:05:51 CDT)
  • Osmany guirola Cruz (Tue May 23 2006 - 10:10:47 CDT)
  • Ch. Fufezan (Tue May 23 2006 - 09:26:52 CDT)
  • Axel Kohlmeyer (Mon May 22 2006 - 23:29:51 CDT)
  • Christian Fufezan (Mon May 22 2006 - 19:08:17 CDT)
• Change Font on VMD Main Window -- Linux
  • John Stone (Mon Jan 11 2021 - 16:36:35 CST)
  • Rudy Richardson (Thu Jan 07 2021 - 14:42:13 CST)
• Change in color of residue
  • Ramin Ekhteiari (Fri Jun 28 2013 - 13:09:32 CDT)
  • rama david (Fri Jun 28 2013 - 09:59:29 CDT)
• Change in reaction coordinate value after doing solvation from that of the crystal structure
  • Vermaas, Joshua (Thu Apr 12 2018 - 14:55:26 CDT)
  • Sheena Singh (Thu Apr 12 2018 - 10:07:09 CDT)
• Change Label Font
  • John Stone (Mon Jul 08 2019 - 00:54:13 CDT)
  • Gajanan Kanagalingam (Sun Jun 30 2019 - 04:14:13 CDT)
• change location of temporay file storage (Win2k
  • Dieter Blaas (Tue May 11 2004 - 08:20:31 CDT)
• change location of temporay file storage (Win2k)
  • dieter blaas (Mon May 10 2004 - 23:59:18 CDT)
  • John Stone (Mon Mar 15 2004 - 13:53:02 CST)
  • dieter blaas (Thu Mar 11 2004 - 23:55:32 CST)
• Change of colour for bond distance
  • Suchetana Gupta (Fri Sep 13 2019 - 09:07:05 CDT)
  • Vermaas, Joshua (Fri Sep 13 2019 - 08:34:51 CDT)
  • Suchetana Gupta (Fri Sep 13 2019 - 00:26:30 CDT)
• change of font
  • Salvatore Mario Cosseddu (Fri Feb 10 2012 - 09:12:46 CST)
  • John Stone (Fri Feb 10 2012 - 09:04:57 CST)
  • lecan (Thu Feb 09 2012 - 20:01:17 CST)
• Change only the CA coordinates in a pdb file via tcl
  • Mert Gür (Mon Jun 14 2010 - 16:24:44 CDT)
  • genie lfs (Mon Jun 14 2010 - 15:45:07 CDT)
  • John Stone (Mon Jun 14 2010 - 15:12:33 CDT)
  • Mert Gür (Mon Jun 14 2010 - 14:26:14 CDT)
• Change Path to Povray
  • John Stone (Thu Aug 11 2011 - 10:30:15 CDT)
  • Moritz Münsterberg (Thu Aug 11 2011 - 03:34:59 CDT)
• Change properties of representations - batch mode
  • John Stone (Fri Nov 17 2006 - 11:13:05 CST)
  • Axel Kohlmeyer (Fri Nov 17 2006 - 10:47:02 CST)
  • Peter Freddolino (Fri Nov 17 2006 - 10:38:07 CST)
  • nunolf_at_ci.uc.pt (Fri Nov 17 2006 - 09:48:18 CST)
• Change representation default from lines to points
  • Axel Kohlmeyer (Thu Jun 02 2005 - 10:08:24 CDT)
  • Prasad S Garimella (Thu Jun 02 2005 - 09:56:16 CDT)
• Change requested in lammps plugin for VMD
  • Axel Kohlmeyer (Fri May 15 2009 - 12:32:48 CDT)
  • Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
• change residue colors?
  • John Stone (Mon Sep 13 2010 - 12:42:33 CDT)
  • Fatemesadat Emami (Fri Sep 10 2010 - 14:37:23 CDT)
• change residue name and write a trajectory file
  • Axel Kohlmeyer (Thu Apr 10 2008 - 18:19:12 CDT)
  • L. Michel Espinoza-Fonseca (Thu Apr 10 2008 - 17:02:13 CDT)
• change the radius of atoms
  • Joaquim Rui Rodrigues (Thu Oct 23 2008 - 05:40:59 CDT)
  • Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
• change the representation of certain atoms which pass a geometric criterion during a movie
  • Axel Kohlmeyer (Tue Sep 18 2007 - 08:34:29 CDT)
  • maria goranovic (Tue Sep 18 2007 - 08:21:45 CDT)
• Change Tkconsole brackground
  • John Stone (Mon Oct 18 2021 - 12:02:21 CDT)
  • Georcki Ropon (Sun Oct 10 2021 - 14:19:12 CDT)
• Change transparency along a trajectory
  • Axel Kohlmeyer (Mon Dec 09 2013 - 08:13:35 CST)
  • Gaetano Calabró (Mon Dec 09 2013 - 05:55:12 CST)
• Change VDW scaling in CPK drawing method
  • Norman Geist (Fri Feb 13 2015 - 01:47:34 CST)
  • Josh Vermaas (Thu Feb 12 2015 - 11:54:22 CST)
  • John Stone (Thu Feb 12 2015 - 11:38:18 CST)
  • Damien Serres (Thu Feb 12 2015 - 11:03:52 CST)
• change_tkconsole_color_of_background_and_foreground
  • Ashar Malik (Sun Dec 04 2016 - 10:53:47 CST)
  • Aman Jindal (Sun Dec 04 2016 - 06:26:33 CST)
  • Aman Jindal (Sun Dec 04 2016 - 07:15:31 CST)
  • Panagiotis Lagarias (Sun Dec 04 2016 - 04:48:07 CST)
• Changing a structure of macromolecule with VMD
  • Axel Kohlmeyer (Sun Feb 24 2008 - 11:36:04 CST)
  • Peter Freddolino (Sun Feb 24 2008 - 09:27:34 CST)
  • fouchni_at_uni-osnabrueck.de (Sun Feb 24 2008 - 08:38:44 CST)
• Changing alphanumeric atom naming scheme to numeric
  • Peter C. Lai (Wed Jun 06 2012 - 14:21:46 CDT)
  • John Stone (Wed Jun 06 2012 - 12:07:11 CDT)
  • Bryan Roessler (Wed Jun 06 2012 - 09:47:44 CDT)
  • John Stone (Tue Jun 05 2012 - 13:05:38 CDT)
  • Bryan Roessler (Tue Jun 05 2012 - 12:07:15 CDT)
• Changing atom colouring by a non-standard property
  • Thomas Aldershof (Tue Jul 26 2016 - 23:10:44 CDT)
  • John Stone (Thu Jul 21 2016 - 16:54:54 CDT)
  • Thomas Aldershof (Wed Jul 20 2016 - 01:36:21 CDT)
• changing atom number in animation
  • John Stone (Thu May 15 2003 - 16:21:24 CDT)
  • yifat b (Thu May 15 2003 - 05:01:06 CDT)
  • John Stone (Mon May 12 2003 - 11:07:32 CDT)
  • yifat b (Mon May 12 2003 - 04:50:17 CDT)
• Changing atom order in DCD structures?
  • Chang, Christopher (Mon Jul 25 2005 - 15:42:45 CDT)
• Changing atoms diameter
  • Axel Kohlmeyer (Fri Apr 22 2016 - 05:18:28 CDT)
  • ehsan shahini (Fri Apr 22 2016 - 04:26:46 CDT)
• Changing Beta values for each frame of a trajectory..
  • Arun Krishnan (Wed Jun 20 2007 - 23:39:21 CDT)
  • John Stone (Wed Jun 20 2007 - 22:50:19 CDT)
  • Arun Krishnan (Wed Jun 20 2007 - 22:08:17 CDT)
• changing bond color
  • Ramya Gamini (Tue Jan 06 2009 - 12:27:22 CST)
  • Axel Kohlmeyer (Tue Jan 06 2009 - 12:30:19 CST)
  • Peter Freddolino (Tue Jan 06 2009 - 11:50:11 CST)
  • jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
• Changing bond numbers
  • Axel Kohlmeyer (Thu Mar 20 2014 - 11:58:09 CDT)
  • T K (Thu Mar 20 2014 - 10:05:53 CDT)
  • Axel Kohlmeyer (Sun Mar 09 2014 - 03:37:28 CDT)
  • T K (Sun Mar 09 2014 - 00:52:22 CST)
• changing certain dihedral angles while keeping rest of molecule fixed
  • Peter Freddolino (Wed Jun 06 2007 - 10:41:54 CDT)
  • Himanshu Khandelia (Wed Jun 06 2007 - 10:02:54 CDT)
  • Peter Freddolino (Wed Jun 06 2007 - 09:24:18 CDT)
  • Himanshu Khandelia (Wed Jun 06 2007 - 04:37:01 CDT)
• changing chain id and pdb generating
  • John Stone (Fri Dec 20 2013 - 17:06:46 CST)
  • Ramin Ekhteiari (Thu Dec 12 2013 - 03:06:36 CST)
• Changing color of a given atom
  • Axel Kohlmeyer (Wed Oct 13 2004 - 00:52:36 CDT)
  • Hess, Bret (Mon Oct 11 2004 - 18:31:03 CDT)
• Changing color scale bar location in VMD
  • John Stone (Fri May 06 2022 - 01:06:40 CDT)
  • Ahmad Alqaisi (Fri Mar 25 2022 - 20:30:06 CDT)
• Changing colors
  • Axel Kohlmeyer (Mon Nov 28 2005 - 14:56:54 CST)
  • ed mendez (Sun Nov 27 2005 - 06:30:51 CST)
• Changing colors during a dynamics
  • Luca Bellarosa (Tue Apr 22 2014 - 10:43:46 CDT)
  • Axel Kohlmeyer (Wed Apr 09 2014 - 10:15:02 CDT)
  • Luca Bellarosa (Wed Apr 09 2014 - 09:29:21 CDT)
• changing colours isosurface
  • John Stone (Mon Mar 13 2006 - 11:17:08 CST)
  • L. Michel Espinoza-Fonseca (Mon Mar 13 2006 - 10:44:23 CST)
• changing cpk shere scale in TCL
  • John Stone (Wed Oct 05 2005 - 14:47:45 CDT)
  • JC Gumbart (Wed Oct 05 2005 - 13:38:59 CDT)
  • pascal.baillod_at_epfl.ch (Wed Oct 05 2005 - 12:07:15 CDT)
• Changing decimal places in a label?
  • John Stone (Thu Feb 04 2010 - 10:48:38 CST)
  • Dr. Seth Olsen (Wed Feb 03 2010 - 23:21:12 CST)
• changing default colors for resname HIE HID HIP
  • Vlad Cojocaru (Mon Oct 30 2006 - 06:45:42 CST)
• changing default sec struct colors
  • Axel Kohlmeyer (Mon Jan 02 2006 - 16:12:46 CST)
  • sheldonp_at_sas.upenn.edu (Mon Jan 02 2006 - 10:18:21 CST)
• Changing Default Settings for VMD Main Window
  • Axel Kohlmeyer (Thu Jan 19 2006 - 08:02:47 CST)
  • Adrian Koh (Thu Jan 19 2006 - 05:08:23 CST)
• changing dihedral angles in molefacture
  • Peter Freddolino (Mon Nov 05 2007 - 07:11:28 CST)
  • Samuel Coulbourn Flores (Mon Nov 05 2007 - 02:42:48 CST)
• changing font size
  • John Stone (Thu Jun 21 2012 - 10:20:56 CDT)
  • John Stone (Thu Jun 21 2012 - 10:35:27 CDT)
  • Shyno Mathew (Thu Jun 21 2012 - 10:25:04 CDT)
  • John Stone (Thu Jun 21 2012 - 10:10:31 CDT)
  • Shyno Mathew (Thu Jun 21 2012 - 10:18:05 CDT)
  • Shyno Mathew (Tue Jun 19 2012 - 16:44:13 CDT)
• changing frame
  • JC Gumbart (Tue Jan 09 2007 - 23:55:16 CST)
  • Myunggi Yi (Tue Jan 09 2007 - 22:15:11 CST)
• Changing Graphical Representations
  • John Stone (Thu Jan 26 2006 - 14:03:29 CST)
  • Axel Kohlmeyer (Wed Jan 25 2006 - 06:53:15 CST)
  • Adrian Koh (Wed Jan 25 2006 - 00:15:54 CST)
• Changing isosurface wireframe thickness when rendering with Tachyon
  • Matthieu Benoit (Wed Feb 27 2019 - 23:44:27 CST)
• Changing isosurface wireframe thickness when rendering with TachyonL
  • John Stone (Wed Mar 21 2018 - 10:36:54 CDT)
  • Rune Thomas Kidmose (Wed Mar 21 2018 - 07:39:19 CDT)
• changing label format with some arithmetic
  • Axel Kohlmeyer (Wed Aug 17 2011 - 10:13:09 CDT)
  • maria goranovic (Wed Aug 17 2011 - 04:05:19 CDT)
• Changing molecule number
  • Maxim Belkin (Mon Feb 08 2016 - 11:24:47 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 10:57:24 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 10:28:24 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 10:05:36 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 09:34:27 CST)
  • Irem Altan (Mon Feb 08 2016 - 09:02:03 CST)
• changing molid number
  • Axel Kohlmeyer (Mon Jul 04 2016 - 16:27:37 CDT)
  • Benjamin Hill (Mon Jul 04 2016 - 16:02:27 CDT)
• changing name of N and C term residues
  • Joaquim Rui de Castro Rodrigues (Fri Sep 21 2012 - 13:04:59 CDT)
  • Martin, Erik W (Fri Sep 21 2012 - 10:23:12 CDT)
• Changing Nvidia driver
  • Christian Wohlschlager (Tue Nov 17 2009 - 02:46:23 CST)
• changing occupancy for bunch of PDB file
  • John Stone (Fri Jul 08 2005 - 13:58:44 CDT)
  • Shahid Qamar (Fri Jul 08 2005 - 13:48:44 CDT)
• changing origin of rotation (NOT center of mass)
  • Michael Daily (Fri Aug 19 2011 - 13:41:06 CDT)
• Changing representations on a per-atom per-timestep basis
  • Ajasja LjubetiÄ� (Tue Jun 28 2011 - 12:48:11 CDT)
  • Axel Kohlmeyer (Tue Jun 28 2011 - 12:14:19 CDT)
  • J. Nathan Scott (Tue Jun 28 2011 - 11:34:19 CDT)
• Changing residue name for a resid
  • Vermaas, Josh (Sun Sep 19 2021 - 15:10:03 CDT)
  • Kiana Jahani (Sat Sep 18 2021 - 06:08:41 CDT)
• Changing Text Style
  • John Stone (Wed Oct 04 2006 - 00:10:36 CDT)
  • Dr. Seth Olsen (Tue Oct 03 2006 - 21:52:35 CDT)
• Changing the atom species during animation
  • John Stone (Wed Sep 15 2004 - 17:56:07 CDT)
  • Oliver Lanning (Wed Sep 08 2004 - 02:59:11 CDT)
• Changing the color of atoms of a particular name
  • Axel Kohlmeyer (Sun Jun 17 2012 - 06:45:40 CDT)
  • Andrew DeYoung (Sat Jun 16 2012 - 18:50:47 CDT)
• changing the color of Sn atom
  • Mark Cunningham (Wed May 11 2011 - 09:34:41 CDT)
  • Axel Kohlmeyer (Wed May 11 2011 - 08:37:46 CDT)
  • Goldsmith, Jacob (Wed May 11 2011 - 08:45:50 CDT)
  • beyza bilgic (Wed May 11 2011 - 06:12:50 CDT)
  • Beyza Bilgiç (Wed May 11 2011 - 05:24:31 CDT)
• Changing the color of some atoms
  • Majid Shahbabaei (Thu Nov 19 2015 - 22:54:49 CST)
• changing the color of subset of representation
  • John Stone (Wed Mar 15 2006 - 18:59:20 CST)
  • Jeffrey Tseng (Wed Mar 15 2006 - 14:54:58 CST)
  • John Stone (Wed Mar 15 2006 - 10:09:46 CST)
  • John Stone (Wed Mar 15 2006 - 10:05:55 CST)
  • Jeffrey Tseng (Wed Mar 15 2006 - 00:03:03 CST)
  • John Stone (Tue Mar 14 2006 - 15:34:57 CST)
  • Jeffrey Tseng (Tue Mar 14 2006 - 03:18:32 CST)
  • John Stone (Tue Mar 14 2006 - 00:39:40 CST)
  • Jeffrey Tseng (Mon Mar 13 2006 - 14:12:09 CST)
  • John Stone (Mon Mar 13 2006 - 11:41:19 CST)
  • Jeffrey Tseng (Sun Mar 12 2006 - 14:52:15 CST)
• changing the default representation for the sequence viewer
  • John Stone (Mon Oct 31 2005 - 16:25:10 CST)
  • Vlad Cojocaru (Mon Oct 31 2005 - 05:20:48 CST)
• Changing the display window size in a script
  • John Stone (Fri Feb 09 2007 - 03:06:28 CST)
  • Ignacio Fernández Galván (Fri Feb 09 2007 - 02:37:02 CST)
• Changing the Font size of the XYZ Logo
  • Axel Kohlmeyer (Fri Apr 11 2014 - 12:45:51 CDT)
  • Mehdi Eftekhari (Fri Apr 11 2014 - 12:00:25 CDT)
  • Maxim Belkin (Fri Apr 11 2014 - 11:05:35 CDT)
  • Mehdi Eftekhari (Fri Apr 11 2014 - 10:48:37 CDT)
• Changing the format of atom labels from %f.3 to something else
  • Giacomo Fiorin (Thu Nov 30 2017 - 09:13:09 CST)
  • sperez14_at_us.es (Thu Nov 30 2017 - 04:40:09 CST)
  • sperez14_at_us.es (Thu Nov 30 2017 - 02:43:50 CST)
• Changing the Index values of a molecule (the differenece between gro and pdb files)
  • Axel Kohlmeyer (Wed Aug 15 2007 - 12:51:30 CDT)
  • Giovanni Bellesia (Wed Aug 15 2007 - 13:32:56 CDT)
  • Peter Freddolino (Wed Aug 15 2007 - 12:34:52 CDT)
  • Arneh Babakhani (Wed Aug 15 2007 - 13:06:17 CDT)
  • Arneh Babakhani (Wed Aug 15 2007 - 12:39:08 CDT)
• Changing the label for resname
  • John Stone (Mon Aug 09 2004 - 16:06:46 CDT)
  • Sunita Patel (Mon Aug 09 2004 - 09:44:03 CDT)
• changing the name of a residue
  • John Stone (Mon Aug 21 2006 - 10:37:59 CDT)
  • L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 10:23:21 CDT)
• changing the order of atom selections / alignment issue
  • Leonardo Trabuco (Mon Aug 27 2007 - 11:07:47 CDT)
  • Jim Pfaendtner (Mon Aug 27 2007 - 10:58:31 CDT)
  • Leonardo Trabuco (Sat Aug 25 2007 - 01:31:45 CDT)
  • Jim Pfaendtner (Fri Aug 24 2007 - 17:58:51 CDT)
• changing the representation of a vector
  • Axel Kohlmeyer (Fri Nov 17 2006 - 11:02:42 CST)
  • Peter Freddolino (Fri Nov 17 2006 - 10:36:11 CST)
  • L. Michel Espinoza-Fonseca (Fri Nov 17 2006 - 10:09:55 CST)
• changing the representation of all loaded molecules
  • Elif Ozkirimli (Wed May 26 2004 - 13:32:28 CDT)
  • Jim Phillips (Thu May 20 2004 - 15:38:37 CDT)
  • Axel Kohlmeyer (Thu May 20 2004 - 13:35:08 CDT)
  • John Stone (Thu May 20 2004 - 09:13:35 CDT)
  • Elif Ozkirimli (Thu May 20 2004 - 08:55:25 CDT)
  • Axel Kohlmeyer (Thu May 20 2004 - 02:34:14 CDT)
  • Elif Ozkirimli (Wed May 19 2004 - 14:32:02 CDT)
• Changing the rotation and centering matrix of a molecule
  • Justin Gullingsrud (Wed Oct 13 2004 - 13:29:24 CDT)
  • CHAUMONT Alain (Wed Oct 13 2004 - 10:39:48 CDT)
• Changing the Secondary Structure of a Protein
  • MIke S (Sun Dec 28 2008 - 01:18:23 CST)
• changing the tile angle of a peptide embedded in a membrane
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:05:36 CDT)
  • John Stone (Mon Sep 10 2007 - 13:09:39 CDT)
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 12:57:13 CDT)
• changing the tilt angle of a peptide embedded in a membrane
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:08:38 CDT)
• Changing the title in the viewer window
  • John Stone (Mon Oct 03 2005 - 11:43:03 CDT)
  • Palmer, Teresa (Wed Sep 28 2005 - 12:16:55 CDT)
• Changing Tk console background
  • Lindsey Prignano (Wed Aug 25 2021 - 18:38:01 CDT)
  • Victor Kwan (Wed Aug 25 2021 - 18:05:26 CDT)
  • Manasa Yadavalli (Wed Aug 25 2021 - 15:46:57 CDT)
• Charge coloring and Stereo hot keys
  • John Stone (Mon Aug 19 2002 - 10:29:48 CDT)
  • Jill Vickery (Fri Aug 16 2002 - 17:48:55 CDT)
• charge exceed the range between Low bound and High bound in ffTK charge optimization
  • Wenhao Liu (Fri Jun 07 2013 - 10:00:43 CDT)
  • Mayne, Christopher G (Fri Jun 07 2013 - 09:29:16 CDT)
  • Wenhao Liu (Fri Jun 07 2013 - 09:16:14 CDT)
  • JC Gumbart (Fri Jun 07 2013 - 07:40:49 CDT)
  • Wenhao Liu (Thu Jun 06 2013 - 21:58:35 CDT)
• charge information for the PMEpot plugin
  • Axel Kohlmeyer (Wed Jun 01 2011 - 12:25:04 CDT)
  • Raul Araya (Wed Jun 01 2011 - 11:48:07 CDT)
• Charge opt in FFTK
  • Ushasi Pramanik 1710228 (Fri Aug 03 2018 - 05:25:34 CDT)
• charge opt not converged
  • Pawel Kedzierski (Thu Apr 22 2021 - 09:13:08 CDT)
  • Lokendra Poudel (Thu Nov 19 2020 - 10:27:30 CST)
  • Pawel Kedzierski (Thu Nov 19 2020 - 03:25:43 CST)
  • Daniel Fellner (Wed Nov 18 2020 - 18:18:04 CST)
  • Daniel Fellner (Wed Nov 18 2020 - 16:34:30 CST)
  • Daniel Fellner (Wed Nov 18 2020 - 15:45:39 CST)
  • Gumbart, JC (Wed Nov 18 2020 - 14:35:01 CST)
  • Lokendra Poudel (Wed Nov 18 2020 - 10:12:40 CST)
• charge optimization
  • JC Gumbart (Sun Oct 18 2020 - 18:37:03 CDT)
  • Lokendra Poudel (Tue Oct 13 2020 - 17:55:20 CDT)
• Charge Optimization error
  • Mayne, Christopher G (Mon Feb 20 2017 - 14:23:09 CST)
  • Lakshmikanth Srinivasamurthy (Sun Feb 19 2017 - 03:13:35 CST)
• Charge Optimization error: error deleting "base-wat.pdb": permission denied
  • Zeinab Emami (Sat Nov 08 2014 - 15:28:08 CST)
  • Mayne, Christopher G (Sat Nov 08 2014 - 11:29:31 CST)
  • Ashar Malik (Sat Nov 08 2014 - 10:46:00 CST)
  • Zeinab Emami (Sat Nov 08 2014 - 10:30:55 CST)
  • Mayne, Christopher G (Sat Nov 08 2014 - 10:11:49 CST)
  • Zeinab Emami (Sat Nov 08 2014 - 07:40:24 CST)
• Charge optimization in ffTK
  • Amira Yu (Thu Nov 05 2015 - 07:20:32 CST)
  • Pawel Kedzierski (Thu Nov 05 2015 - 02:04:17 CST)
  • Amira Yu (Wed Nov 04 2015 - 14:05:26 CST)
  • Mayne, Christopher G (Wed Nov 04 2015 - 13:51:00 CST)
  • Amira Yu (Wed Nov 04 2015 - 09:09:39 CST)
• charge re-optimization
  • Darre Castell, Leonardo (Fri Jul 19 2013 - 10:13:47 CDT)
  • Mayne, Christopher G (Fri Jul 19 2013 - 10:08:36 CDT)
  • Darre Castell, Leonardo (Fri Jul 19 2013 - 08:10:47 CDT)
• Charge State Confusion
  • MIke S (Fri May 09 2008 - 00:45:39 CDT)
  • John Stone (Thu May 08 2008 - 22:55:36 CDT)
  • MIke S (Thu May 08 2008 - 22:17:33 CDT)
• charge surface area
  • Shirley Li (Fri Aug 13 2004 - 11:48:00 CDT)
• charge visualization
  • Axel Kohlmeyer (Tue Feb 07 2012 - 19:49:17 CST)
  • niladri patra (Tue Feb 07 2012 - 18:41:37 CST)
• charges in VMD 1.9 vs. VMD 1.8.7
  • Axel Kohlmeyer (Fri Feb 10 2012 - 08:38:12 CST)
  • Philippe Bopp / temporary (Fri Feb 10 2012 - 07:43:17 CST)
• charges optimisation of a cationic molecule with ffTK
  • Massimiliano Porrini (Mon Mar 03 2014 - 03:45:21 CST)
  • JC Gumbart (Mon Mar 03 2014 - 00:06:04 CST)
  • Massimiliano Porrini (Fri Feb 28 2014 - 05:18:51 CST)
• Charlie Buy your loved one Hermes
  • Dick Medrano (Thu Sep 27 2007 - 20:39:34 CDT)
• Charm force field for POPS lipid
  • Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
• Charm++ fatal error: FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 NG301 (ATOMS 6407 6408) .. ERROR) Error connecting to localhost on port 3000
  • Joao Ribeiro (Mon Dec 16 2019 - 09:26:08 CST)
  • Mubarak Alamri (Sat Dec 14 2019 - 18:30:51 CST)
• charm27 forcefield_topology
  • Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
• charmm binary ele. pot.
  • John Stone (Wed Mar 11 2009 - 14:45:06 CDT)
  • John Stone (Wed Mar 11 2009 - 13:55:37 CDT)
  • Axel Kohlmeyer (Mon Mar 09 2009 - 13:59:25 CDT)
  • Bogdan Costescu (Mon Mar 09 2009 - 13:16:00 CDT)
  • Axel Kohlmeyer (Mon Mar 09 2009 - 11:57:21 CDT)
  • John Stone (Mon Mar 09 2009 - 09:45:56 CDT)
  • Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
• CHARMM CRD files: COR plugin
  • John Stone (Tue Dec 16 2003 - 21:02:57 CST)
  • Josh Ward (Fri Dec 12 2003 - 14:52:22 CST)
• CHARMM electrostatic potential
  • ivana adamovic (Thu Feb 01 2007 - 13:17:21 CST)
  • John Stone (Thu Feb 01 2007 - 11:16:38 CST)
  • ivana adamovic (Thu Feb 01 2007 - 08:28:20 CST)
• Charmm expanded coordinate file format?
  • John Stone (Mon Dec 26 2005 - 12:02:31 CST)
  • Joshua Speidel (Thu Dec 22 2005 - 19:30:51 CST)
• Charmm FF parameter file for 2-hydroxypyridine
  • Mayne, Christopher G (Tue Jul 24 2012 - 13:52:23 CDT)
  • Him Bandhu Upadhyay (Tue Jul 24 2012 - 13:10:30 CDT)
• CHARMM parameters for ADP-ribosylated arginine?
  • SHIVAM TIWARI (Wed Dec 30 2020 - 01:15:40 CST)
  • Josh Vermaas (Tue Dec 29 2020 - 18:28:59 CST)
  • Aaron Oakley (Tue Dec 29 2020 - 18:03:21 CST)
  • Smith, Harper E. (Tue Dec 29 2020 - 16:03:51 CST)
• CHARMM parameters for iodide and bromide
  • Mayne, Christopher G (Mon Oct 26 2015 - 19:29:41 CDT)
  • Stojanoski, Vlatko (Sat Oct 24 2015 - 09:37:45 CDT)
  • Stojanoski, Vlatko (Fri Oct 23 2015 - 12:10:58 CDT)
• CHARMM parameters for Mn 2+ ion
  • Daniel Aguayo (Fri Mar 25 2011 - 14:45:15 CDT)
  • Jernej Zidar (Fri Mar 25 2011 - 12:57:00 CDT)
  • Lisa Brown (Fri Mar 25 2011 - 10:43:45 CDT)
• Charmm parameters for Polybutylene terephthalate (PBT)
  • Eduardo (Thu Mar 11 2010 - 01:33:56 CST)
  • muniyamuthu.raviprasad_at_ndsu.edu (Wed Mar 10 2010 - 13:20:38 CST)
• CHARMM TO AMBER FORMAT CONVERT
  • Axel Kohlmeyer (Sun Oct 12 2008 - 19:26:18 CDT)
  • Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
• CHARMM to AMBER trajectory conversion
  • Axel Kohlmeyer (Fri Dec 19 2008 - 09:56:01 CST)
  • Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
• charmm toppology : internal coordinates
  • Arturas Ziemys (Tue Aug 22 2006 - 16:39:00 CDT)
• charmm vs amber
  • Tommy Wang (Mon Jul 29 2002 - 07:01:07 CDT)
• CHARMM36 alleged missing CC CT1 NH2 angle params
  • Francesco Pietra (Tue May 17 2016 - 11:43:05 CDT)
  • JC Gumbart (Tue May 17 2016 - 09:29:52 CDT)
  • Francesco Pietra (Mon May 16 2016 - 08:54:31 CDT)
  • Francesco Pietra (Mon May 16 2016 - 08:54:45 CDT)
  • Peter Freddolino (Mon May 16 2016 - 07:46:47 CDT)
  • Francesco Pietra (Mon May 16 2016 - 04:30:29 CDT)
  • Francesco Pietra (Mon May 16 2016 - 02:45:55 CDT)
• charmm36 and charmm27 together with namd?
  • JC Gumbart (Thu Jul 18 2013 - 09:00:37 CDT)
  • Francesco Pietra (Thu Jul 18 2013 - 01:54:35 CDT)
• CHARMM36 and water: can the H-H "bond" be added to the wat.top file used by solvate.tcl?
  • Gumbart, JC (Wed Jul 05 2023 - 12:32:43 CDT)
  • Cindy Cregier (Wed Jul 05 2023 - 01:14:37 CDT)
• CHARMM36 topology files, AutoPSF and DNA
  • Law, Yu Kay (Fri Aug 17 2012 - 23:32:24 CDT)
  • Suresh (Fri Aug 17 2012 - 23:30:41 CDT)
  • JC Gumbart (Fri Aug 17 2012 - 13:57:45 CDT)
  • Law, Yu Kay (Fri Aug 17 2012 - 10:20:26 CDT)
• charmm36 vs charmm27/22 topology
  • Vermaas, Joshua (Mon Jan 30 2017 - 15:13:17 CST)
  • Neeraj Agrawal (Mon Jan 30 2017 - 14:14:28 CST)
  • Vermaas, Joshua (Mon Jan 30 2017 - 13:49:16 CST)
  • Neeraj Agrawal (Mon Jan 30 2017 - 11:29:19 CST)
• charmmgen to autopsf
  • Peter Freddolino (Tue Mar 22 2011 - 08:40:16 CDT)
  • Peter Freddolino (Tue Mar 22 2011 - 08:37:16 CDT)
  • Francesco Pietra (Tue Mar 22 2011 - 05:32:21 CDT)
  • Peter Freddolino (Mon Mar 21 2011 - 19:42:50 CDT)
  • Francesco Pietra (Mon Mar 21 2011 - 11:50:13 CDT)
  • Peter Freddolino (Mon Mar 21 2011 - 05:48:06 CDT)
  • Francesco Pietra (Mon Mar 21 2011 - 05:12:05 CDT)
• ChatGPT knows basic VMD scripting...
  • Bennion, Brian (Mon Feb 13 2023 - 11:28:20 CST)
  • EDUARDO JOSÉ AZEVEDO CORREA (Mon Feb 13 2023 - 09:37:06 CST)
  • Dusan Racko (Mon Feb 13 2023 - 07:27:29 CST)
  • John Stone (Sun Feb 12 2023 - 22:45:01 CST)
• Cheap 3D Glasses
  • John Stone (Tue Apr 24 2007 - 14:26:11 CDT)
  • Gustavo Seabra (Mon Apr 23 2007 - 18:07:07 CDT)
• Check and remove the overlapping between atoms
  • Axel Kohlmeyer (Sun Feb 16 2020 - 17:47:25 CST)
  • Amir Afshar (Sat Feb 15 2020 - 17:14:23 CST)
  • Amir Afshar (Sat Feb 15 2020 - 15:18:32 CST)
  • Giacomo Fiorin (Sat Feb 15 2020 - 14:57:49 CST)
  • Amir Afshar (Sat Feb 15 2020 - 13:31:55 CST)
  • Axel Kohlmeyer (Sat Feb 15 2020 - 11:09:48 CST)
  • Giacomo Fiorin (Sat Feb 15 2020 - 11:14:47 CST)
  • Amir Afshar (Sat Feb 15 2020 - 10:26:43 CST)
• Check DCD finish
  • Georcki Ropon (Tue Mar 01 2022 - 11:06:02 CST)
• Check if the lysine residues are deprotonated or not inside the membrane ?
  • Roshan Shrestha (Fri May 24 2019 - 08:55:40 CDT)
• Check out my photos on Facebook
  • Aneesh Cna (Tue Sep 28 2010 - 04:27:52 CDT)
• CHGCAR file read in VMD
  • Diego Gomes (Wed Aug 07 2024 - 10:16:25 CDT)
  • Diego Gomes (Fri Aug 02 2024 - 12:08:46 CDT)
  • SKM (Wed Jul 31 2024 - 22:06:25 CDT)
• Child killed error: unknown signal
  • John Stone (Tue Jun 16 2020 - 23:31:47 CDT)
  • Mintare Cesiunaite (Tue Jun 16 2020 - 23:15:36 CDT)
• chime vs vmd
  • Peter Schellenberg (Tue Aug 14 2007 - 05:37:55 CDT)
  • John Stone (Mon Aug 13 2007 - 11:49:24 CDT)
  • Francesco Pietra (Sun Aug 12 2007 - 11:11:05 CDT)
• Chiral indices in VMD Nanotube Builder
  • Akif Ramzan (Wed Jun 13 2018 - 08:10:11 CDT)
• chlorine atom: Cl or CL ?
  • Denilson F. Oliveira (Fri Dec 02 2016 - 12:03:00 CST)
• chloroform box
  • Axel Kohlmeyer (Sun Aug 05 2007 - 12:35:15 CDT)
  • Francesco Pietra (Sun Aug 05 2007 - 02:28:15 CDT)
  • Axel Kohlmeyer (Sat Aug 04 2007 - 11:38:10 CDT)
  • Peter Freddolino (Sat Aug 04 2007 - 12:04:20 CDT)
  • Francesco Pietra (Sat Aug 04 2007 - 09:08:41 CDT)
  • Peter Freddolino (Sat Aug 04 2007 - 08:00:48 CDT)
  • Francesco Pietra (Sat Aug 04 2007 - 00:52:20 CDT)
• chloroform box ChARMM
  • Francesco Pietra (Wed Nov 17 2021 - 04:41:24 CST)
• Chloroform Solvent Box
  • Harindar Keer (Tue Nov 23 2004 - 11:17:45 CST)
• Choice of a Linux machine for VMD and high-end computing
  • Karsten Suhre (Fri Apr 08 2005 - 07:34:04 CDT)
  • Benjamin Goldsteen (Wed Apr 06 2005 - 16:58:07 CDT)
  • John Stone (Wed Apr 06 2005 - 16:01:34 CDT)
  • Sabuj Pattanayek (Wed Apr 06 2005 - 15:39:19 CDT)
  • John Stone (Wed Apr 06 2005 - 11:27:54 CDT)
  • Karsten Suhre (Wed Apr 06 2005 - 11:09:58 CDT)
• choice of VDW radius
  • Axel Kohlmeyer (Fri Apr 30 2010 - 08:34:36 CDT)
  • Nicolas Floquet (Fri Apr 30 2010 - 02:43:58 CDT)
• Choosing an appropriate isovalue for comparing different systems
  • John Stone (Tue Jul 14 2015 - 10:14:12 CDT)
  • DEBOSTUTI GHOSHDASTIDAR (Sun Jul 12 2015 - 10:37:35 CDT)
• choosing an optimal workstation video card for VMD
  • Jeremiah Babcock (Tue May 06 2014 - 21:58:36 CDT)
  • John Stone (Tue May 06 2014 - 16:01:20 CDT)
  • Josh Vermaas (Tue May 06 2014 - 12:48:05 CDT)
  • Axel Kohlmeyer (Tue May 06 2014 - 12:58:13 CDT)
  • Erik Nordgren (Tue May 06 2014 - 11:08:40 CDT)
• Chromium
  • Alexander Farley (Sun Sep 08 2002 - 09:44:58 CDT)
  • Cesar Delgado (Mon Aug 05 2002 - 16:19:09 CDT)
  • John Stone (Mon Aug 05 2002 - 14:33:57 CDT)
  • Cesar Delgado (Thu Aug 01 2002 - 16:21:54 CDT)
  • John Stone (Thu Aug 01 2002 - 16:15:00 CDT)
  • Cesar Delgado (Thu Aug 01 2002 - 16:07:40 CDT)
  • John Stone (Thu Aug 01 2002 - 15:48:34 CDT)
  • Cesar Delgado (Thu Aug 01 2002 - 15:16:31 CDT)
• CIF file reader
  • Giacomo Fiorin (Thu Dec 02 2021 - 10:04:56 CST)
  • John Stone (Wed Dec 01 2021 - 23:38:29 CST)
  • Axel Kohlmeyer (Wed Dec 01 2021 - 22:26:19 CST)
  • FX (Wed Dec 01 2021 - 04:14:59 CST)
  • FX (Sat Apr 04 2020 - 11:10:20 CDT)
  • Chris Neale (Wed Apr 01 2020 - 01:48:32 CDT)
  • John Stone (Wed Apr 01 2020 - 00:53:17 CDT)
  • Giacomo Fiorin (Sun Mar 29 2020 - 10:04:55 CDT)
  • John Keller (Sun Mar 29 2020 - 02:55:42 CDT)
  • Chris Neale (Sat Mar 28 2020 - 23:24:24 CDT)
  • John Stone (Sat Mar 28 2020 - 22:10:43 CDT)
  • FX (Sat Mar 28 2020 - 19:35:14 CDT)
  • Giacomo Fiorin (Sat Mar 28 2020 - 15:53:53 CDT)
  • FX (Sat Mar 28 2020 - 13:29:56 CDT)
  • John Stone (Tue Mar 24 2020 - 11:06:27 CDT)
  • Mortimer Hemmit (Mon Mar 23 2020 - 15:57:20 CDT)
  • FX (Sun Mar 22 2020 - 17:00:35 CDT)
• Cionize
  • John Stone (Fri Sep 16 2011 - 13:48:43 CDT)
  • Christian Wohlschlager (Thu Sep 15 2011 - 01:12:16 CDT)
  • Christian Wohlschlager (Fri Sep 09 2011 - 02:10:28 CDT)
• CIonize Not Installed on Windows VMD
  • Arash Firouzbakht (Tue Apr 13 2021 - 14:33:15 CDT)
• Cionize on mac cuda
  • daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
  • John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
  • daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
  • John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
  • John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
  • daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
  • daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
• Cionize plugin
  • Paula Mihaljevic-Juric (Tue May 21 2019 - 09:46:53 CDT)
• Cionize Plugin - Output Options?
  • Michael Robinson (Tue Mar 03 2020 - 23:57:34 CST)
• cionize plugin VMD
  • Peter Freddolino (Mon Nov 09 2020 - 14:34:37 CST)
  • Atreyo Pal (Mon Nov 09 2020 - 11:33:51 CST)
• Cionize question for DNA molecule
  • Parisa Akhski (Thu Jul 15 2010 - 11:52:54 CDT)
• cispeptide and chirality extrab options
  • Tristan Croll (Mon Sep 09 2013 - 04:15:06 CDT)
• citing SODIUM program
  • John Stone (Tue Jan 14 2014 - 09:19:27 CST)
  • Shyno Mathew (Sat Jan 04 2014 - 10:45:36 CST)
• CL
  • Axel Kohlmeyer (Fri Jul 04 2014 - 10:47:12 CDT)
  • Christian Wohlschlager (Fri Jul 04 2014 - 06:13:43 CDT)
• Cl ions
  • Justin Gullingsrud (Thu Jan 16 2003 - 23:26:37 CST)
  • Ioana Cozmuta (Thu Jan 16 2003 - 21:05:34 CST)
• Clarification on RMSF Calculation
  • Efthymiou, Christos (Mon May 30 2022 - 16:01:41 CDT)
  • Vermaas, Josh (Mon May 30 2022 - 15:52:12 CDT)
  • Efthymiou, Christos (Mon May 30 2022 - 14:08:16 CDT)
• Clarification on solvent box sizing
  • Ian Stokes-Rees (Wed Sep 22 2010 - 14:42:30 CDT)
• clarification to "problem using pbc wrap"
  • politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
• classify and compute the forces between two atoms
  • Axel Kohlmeyer (Mon Feb 25 2008 - 10:08:44 CST)
  • ChenFei (Mon Feb 25 2008 - 06:38:58 CST)
• Classroom Stereo projection
  • Kim, Kwiseon (Wed Oct 19 2005 - 12:30:12 CDT)
  • John Stone (Wed Oct 19 2005 - 11:08:29 CDT)
  • Kim, Kwiseon (Wed Oct 19 2005 - 11:03:19 CDT)
  • John Stone (Mon Oct 17 2005 - 17:24:01 CDT)
  • Paul Van Allsburg (Mon Oct 17 2005 - 08:42:01 CDT)
  • John Stone (Fri Oct 14 2005 - 15:45:29 CDT)
  • Paul Van Allsburg (Thu Oct 13 2005 - 15:16:20 CDT)
• clear altloc field
  • John Stone (Tue Mar 12 2013 - 14:50:37 CDT)
  • Martin, Erik W (Mon Mar 11 2013 - 16:49:47 CDT)
• Clip
  • John Stone (Thu Sep 29 2005 - 00:22:12 CDT)
  • Adrian turjanski (Wed Sep 28 2005 - 20:49:04 CDT)
• clip plane and cpk / VdW
  • Philippe Bopp / temporary (Thu Nov 24 2011 - 09:58:54 CST)
  • Pawel Kedzierski (Thu Nov 24 2011 - 02:52:49 CST)
  • PaweÅ‚ KÄ™dzierski (Thu Nov 24 2011 - 02:52:32 CST)
  • BIN ZHANG (Wed Nov 23 2011 - 11:25:22 CST)
  • John Stone (Wed Nov 23 2011 - 09:22:43 CST)
  • Philippe Bopp / temporary (Wed Nov 23 2011 - 04:48:33 CST)
• Clipping plane
  • John Stone (Mon Jan 25 2021 - 23:55:19 CST)
  • Edgar Galicia (Mon Jan 18 2021 - 11:58:43 CST)
  • Chris Knorowski (Wed Oct 23 2013 - 17:33:14 CDT)
  • Josh Vermaas (Wed Oct 09 2013 - 17:08:15 CDT)
  • Chris Knorowski (Wed Oct 09 2013 - 15:44:53 CDT)
  • Axel Kohlmeyer (Wed Oct 09 2013 - 15:51:15 CDT)
  • John Stone (Wed Oct 09 2013 - 15:55:12 CDT)
  • Axel Kohlmeyer (Wed Oct 09 2013 - 15:19:52 CDT)
  • Chris Knorowski (Wed Oct 09 2013 - 14:25:45 CDT)
• Clipping plane redering issues
  • Korey R (Thu Mar 07 2019 - 18:53:54 CST)
  • Korey R (Mon Mar 04 2019 - 10:46:00 CST)
• Clipping plane tool and export
  • John Stone (Wed Dec 07 2005 - 13:17:20 CST)
  • Paul D. Jones (Wed Dec 07 2005 - 12:58:40 CST)
• clipplane
  • John Stone (Fri Oct 14 2005 - 15:58:31 CDT)
  • Linda (Wed Oct 12 2005 - 19:10:35 CDT)
• Clonerep GUI issue with VMD CVS
  • John Stone (Mon May 02 2016 - 11:37:42 CDT)
  • Jérôme Hénin (Mon May 02 2016 - 11:26:13 CDT)
  • John Stone (Mon May 02 2016 - 10:47:18 CDT)
  • Jérôme Hénin (Mon May 02 2016 - 10:36:17 CDT)
  • Nuno Sousa Cerqueira (Fri Apr 08 2016 - 09:56:57 CDT)
  • John Stone (Fri Apr 08 2016 - 09:14:42 CDT)
  • Josh Vermaas (Fri Apr 08 2016 - 09:22:36 CDT)
  • Jérôme Hénin (Fri Apr 08 2016 - 04:28:03 CDT)
• cloning a molecule
  • Thomas C. Bishop (Mon Nov 05 2007 - 21:27:01 CST)
  • Axel Kohlmeyer (Mon Nov 05 2007 - 00:35:27 CST)
  • John Stone (Fri Nov 02 2007 - 14:22:26 CDT)
  • dimka (Thu Nov 01 2007 - 13:46:44 CDT)
• Close contacts upon solvation of XYZ file.
  • Pawel Kedzierski (Fri Nov 25 2016 - 03:20:37 CST)
  • Dawid das (Fri Nov 25 2016 - 01:52:10 CST)
  • Pawel Kedzierski (Fri Nov 25 2016 - 01:27:57 CST)
  • John Stone (Thu Nov 24 2016 - 12:18:43 CST)
  • Dawid das (Thu Nov 24 2016 - 10:30:50 CST)
• closewater.tcl
  • Irene Newhouse (Mon Mar 17 2008 - 18:59:24 CDT)
  • Axel Kohlmeyer (Mon Mar 17 2008 - 16:02:02 CDT)
  • Irene Newhouse (Mon Mar 17 2008 - 15:50:03 CDT)
  • L. Michel Espinoza-Fonseca (Mon Mar 17 2008 - 15:41:14 CDT)
  • Irene Newhouse (Mon Mar 17 2008 - 14:48:37 CDT)
• Closing filehandles in vmd tcl script
  • Justin Gullingsrud (Fri Jan 21 2005 - 01:28:42 CST)
  • Ben Roberts (Thu Jan 20 2005 - 21:05:51 CST)
• Cluster analysis
  • John Stone (Tue Nov 09 2021 - 16:11:52 CST)
  • SYEDA SABIHA SULTANA LUBNA . (Mon Nov 08 2021 - 04:49:50 CST)
  • OZGE ENGIN (Tue Feb 05 2008 - 06:29:17 CST)
  • Luis Gracia (Mon Jan 07 2008 - 11:22:03 CST)
  • Francesco Pietra (Mon Jan 07 2008 - 15:44:15 CST)
  • John Stone (Mon Jan 07 2008 - 11:51:34 CST)
  • Francesco Pietra (Mon Jan 07 2008 - 12:08:27 CST)
  • Francesco Pietra (Mon Jan 07 2008 - 04:35:30 CST)
  • John Stone (Mon Jan 07 2008 - 01:59:40 CST)
  • Francesco Pietra (Sun Jan 06 2008 - 04:27:19 CST)
• Cluster Analysis given a dcd trajectory
  • pbrenne1_at_nd.edu (Sun Jan 09 2005 - 13:25:16 CST)
  • lug2002_at_med.cornell.edu (Fri Jan 07 2005 - 23:41:14 CST)
  • Axel Kohlmeyer (Sat Jan 08 2005 - 13:28:55 CST)
  • pbrenne1_at_nd.edu (Fri Jan 07 2005 - 15:58:41 CST)
• cluster of particles
  • Salvador H-V (Sun Dec 06 2009 - 20:00:39 CST)
• Cluster plug
  • John Stone (Wed Oct 23 2013 - 10:15:57 CDT)
  • Axel Kohlmeyer (Tue Oct 22 2013 - 16:55:40 CDT)
  • Ramin Ekhteiari (Tue Oct 22 2013 - 15:39:48 CDT)
• Cluster plugin and Gromacs g_cluster
  • OZGE ENGIN (Wed Feb 27 2008 - 07:21:15 CST)
• Clustering algorithm
  • Abramyan, Tigran (Fri Sep 02 2016 - 12:27:59 CDT)
• Clustering by RMSD
  • Smith, Harper E. (Wed May 12 2021 - 13:27:57 CDT)
  • Lilian Esmeralda Araujo Arcos (Wed May 12 2021 - 12:16:56 CDT)
• Clustering MD trajectories
  • Vijay Vammi (Wed Sep 21 2011 - 15:06:13 CDT)
  • Kirby Vandivort (Wed Sep 21 2011 - 14:52:54 CDT)
  • Vijay Vammi (Mon Sep 19 2011 - 14:33:34 CDT)
  • Anurag Sethi (Fri Sep 16 2011 - 17:04:29 CDT)
  • John Stone (Fri Sep 16 2011 - 15:02:59 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 15:42:45 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 14:52:47 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 10:39:40 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 08:13:49 CDT)
• Clustering plugin updated to v2.0
  • Luis Gracia (Thu May 10 2012 - 12:54:20 CDT)
• clustering tool is not working
  • Saikat Pal (Tue Aug 27 2019 - 00:38:21 CDT)
• Clusters help
  • Axel Kohlmeyer (Wed Sep 17 2014 - 05:53:48 CDT)
  • Axel Kohlmeyer (Wed Sep 17 2014 - 04:41:59 CDT)
  • Alessandro Mariani (Wed Sep 17 2014 - 03:57:10 CDT)
• clusters visualization with colours
  • John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
  • Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
• CMAP and psfgen
  • Justin Gullingsrud (Fri Oct 08 2004 - 14:57:48 CDT)
  • Jorge Pikunic (Fri Oct 08 2004 - 12:38:47 CDT)
• CMAP problem
  • John Stone (Tue Jan 03 2006 - 14:05:32 CST)
  • Morad Alawneh (Tue Jan 03 2006 - 13:45:41 CST)
• cmd line FFK
  • Mayne, Christopher G (Fri Aug 09 2013 - 11:26:52 CDT)
  • surya narayanan chandrasekaran (Fri Aug 09 2013 - 08:00:12 CDT)
• CMYK
  • Ignacio Fernández Galván (Wed Oct 31 2007 - 06:28:02 CDT)
  • John Stone (Tue Oct 30 2007 - 17:49:30 CDT)
  • Adrian Roitberg (Tue Oct 30 2007 - 16:08:37 CDT)
• CMYK images
  • Samuel Flores (Sat Jul 30 2005 - 16:42:40 CDT)
  • Dow Hurst DPHURST (Fri Jul 29 2005 - 19:54:46 CDT)
  • Dow Hurst DPHURST (Fri Jul 29 2005 - 19:51:30 CDT)
  • John Stone (Fri Jul 29 2005 - 18:21:28 CDT)
  • ioana_at_pegasus.arc.nasa.gov (Thu Jul 28 2005 - 21:13:08 CDT)
• cns files
  • Matthew Wilce (Sun May 21 2000 - 05:28:05 CDT)
• CNT Analysis
  • Christopher Stiles (Tue Aug 07 2007 - 10:12:13 CDT)
  • Axel Kohlmeyer (Tue Aug 07 2007 - 08:54:06 CDT)
  • Christopher Stiles (Tue Aug 07 2007 - 08:41:31 CDT)
• CNT structure formation
  • Raman Preet Singh (Mon Nov 29 2021 - 03:11:57 CST)
  • Philippe Bopp (Sat Nov 27 2021 - 17:32:46 CST)
  • Axel Kohlmeyer (Sat Nov 27 2021 - 14:03:46 CST)
  • Kibria Imtiaz Shabbir (Fri Nov 26 2021 - 21:48:21 CST)
  • Kibria Imtiaz Shabbir (Thu Nov 25 2021 - 03:52:13 CST)
• Coarse Grain model for graphene
  • Abhishek TYAGI (Wed May 04 2016 - 22:20:34 CDT)
• Coarse grain modelling problem
  • Hasan Mahmud (Tue Nov 19 2019 - 14:26:30 CST)
• Coarse Grain Setup
  • Mcguire, Kelly (Mon Feb 05 2024 - 00:01:55 CST)
• Coarse Grained - angle/bond parameters
  • Steven Neumann (Mon Nov 26 2012 - 10:20:33 CST)
• Coarse Graining Cholesterol with VMD's cg builder
  • Christopher Gutnajer (Tue Jul 09 2013 - 22:30:01 CDT)
  • Kirby Vandivort (Tue Jul 09 2013 - 13:14:18 CDT)
  • Christopher Gutnajer (Fri Jun 28 2013 - 15:12:48 CDT)
• Coarse graining disordered protein
  • Peter Freddolino (Tue Aug 18 2020 - 00:32:47 CDT)
  • Ritu Arora (Wed Aug 12 2020 - 12:34:41 CDT)
• coarse-grained solvate usage
  • Kirby Vandivort (Fri Nov 20 2009 - 12:09:51 CST)
  • Francesco Pietra (Fri Nov 20 2009 - 05:12:35 CST)
• Coarse-graining a retro protein
  • Sourav Ray (Tue Mar 17 2015 - 01:25:46 CDT)
• Coarse-Graining Protein with Ion Ligands
  • Raman Preet Singh (Thu Jan 21 2021 - 00:48:57 CST)
  • Isuru Herath (Wed Jan 20 2021 - 21:12:31 CST)
• Coarse-graining: Inability to assign charge to C-terminus using fix_martini_psf.tcl
  • Sourav Ray (Mon Dec 14 2015 - 18:22:50 CST)
  • Sourav Ray (Mon Dec 14 2015 - 17:51:46 CST)
• code precision problem
  • Jeremiah Babcock (Mon Apr 21 2014 - 12:32:30 CDT)
  • JC Gumbart (Thu Apr 17 2014 - 12:48:05 CDT)
  • Jeremiah Babcock (Wed Apr 16 2014 - 15:06:15 CDT)
• colomb map in volmap tool
  • John Stone (Mon May 28 2007 - 17:17:23 CDT)
  • Raul Araya (Mon May 28 2007 - 17:03:10 CDT)
• Color a protein based on a property
  • John Stone (Fri Aug 10 2007 - 15:09:49 CDT)
  • Naresh (Fri Aug 10 2007 - 14:13:42 CDT)
• color atom by stress
  • John Stone (Sat May 21 2011 - 22:55:46 CDT)
  • Shaorui Yang (Sat May 21 2011 - 21:10:17 CDT)
  • Axel Kohlmeyer (Sat May 21 2011 - 16:25:18 CDT)
  • Shaorui Yang (Sat May 21 2011 - 15:23:48 CDT)
• Color atoms
  • Joshua Anderson (Mon Oct 01 2012 - 06:31:58 CDT)
  • John Stone (Sun Sep 30 2012 - 16:49:19 CDT)
  • Andrew Jewett (Sun Sep 30 2012 - 03:00:13 CDT)
  • Ivan Moncayo (Thu Sep 27 2012 - 11:59:32 CDT)
• Color bar
  • Axel Kohlmeyer (Thu Aug 20 2009 - 17:28:26 CDT)
  • Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
• Color bar in VMD
  • Dan Wright (Fri Apr 22 2005 - 16:23:36 CDT)
• color bar problem in VMD
  • Geng (Thu Jun 29 2017 - 17:19:24 CDT)
  • Robin Betz (Thu Jun 29 2017 - 16:16:04 CDT)
  • Geng (Thu Jun 29 2017 - 16:34:57 CDT)
  • Vermaas, Joshua (Thu Jun 29 2017 - 14:10:24 CDT)
  • Geng (Thu Jun 29 2017 - 12:44:11 CDT)
• color by charge (can colors be changed?)
  • Axel Kohlmeyer (Thu May 25 2006 - 05:02:29 CDT)
  • Jeffrey A Tibbitt (Thu May 25 2006 - 01:14:37 CDT)
• color by frame?
  • John Stone (Mon May 07 2007 - 10:09:23 CDT)
  • Axel Kohlmeyer (Mon May 07 2007 - 08:47:16 CDT)
  • andrea spitaleri (Mon May 07 2007 - 04:58:40 CDT)
• color by molecule number
  • Marco Di Gennaro (TME) (Mon Dec 06 2021 - 04:50:41 CST)
• color by Name
  • PaweÅ‚ Wolski (Mon Sep 29 2014 - 04:10:04 CDT)
• Color by position behavior
  • JT (Sun Nov 29 2009 - 08:23:06 CST)
  • Axel Kohlmeyer (Sun Nov 29 2009 - 03:47:08 CST)
  • JT (Sun Nov 29 2009 - 02:59:31 CST)
• color by resid
  • John Stone (Thu Apr 25 2002 - 14:02:30 CDT)
  • Tran Trung Tran (Tue Apr 23 2002 - 18:28:57 CDT)
  • Don Havelberg (Tue Apr 23 2002 - 02:02:23 CDT)
  • Tran Trung Tran (Mon Apr 22 2002 - 23:31:52 CDT)
• Color by velocity (speed?)
  • Axel Kohlmeyer (Wed Jun 16 2010 - 13:01:21 CDT)
  • Ardy Davari (Wed Jun 16 2010 - 12:04:04 CDT)
• Color by volume
  • Peter Freddolino (Sat Sep 30 2006 - 10:41:09 CDT)
  • Jay Shore (Fri Sep 29 2006 - 11:54:42 CDT)
• Color by Volume on an Intel 945GM
  • John Stone (Mon Oct 22 2007 - 10:34:50 CDT)
  • Jeffry D Madura (Sat Oct 20 2007 - 16:22:42 CDT)
  • Axel Kohlmeyer (Sat Oct 20 2007 - 15:44:39 CDT)
  • Jeffry D Madura (Sat Oct 20 2007 - 14:42:07 CDT)
• Color change in VMD
  • Smith, Harper E. (Wed Jul 27 2022 - 10:48:58 CDT)
  • Saikat Pal (Wed Jul 27 2022 - 10:33:12 CDT)
• color change on atoms selected using mouse
  • Axel Kohlmeyer (Thu Dec 09 2010 - 11:04:44 CST)
  • JhonY. I. (Thu Dec 09 2010 - 10:11:35 CST)
• color charmm dcd by kinetic energy
  • Ardy Davari (Tue Jul 06 2010 - 09:30:27 CDT)
  • Bjoern Olausson (Tue Jul 06 2010 - 02:51:24 CDT)
  • Axel Kohlmeyer (Mon Jul 05 2010 - 17:02:53 CDT)
  • Ardy Davari (Mon Jul 05 2010 - 15:59:22 CDT)
• Color code
  • Justin Gullingsrud (Thu Mar 20 2003 - 10:29:29 CST)
  • Rukman Hertadi (Thu Mar 20 2003 - 01:42:37 CST)
• Color code the structure by RMSF values
  • John Stone (Wed Sep 19 2012 - 12:09:56 CDT)
  • Esam Tolba (Wed Sep 19 2012 - 11:40:26 CDT)
• Color Coding by Residue Type
  • Peter (Thu Jul 28 2022 - 09:06:13 CDT)
  • Satyan Sharma (Tue Jul 26 2022 - 04:46:49 CDT)
  • Peter (Mon Jul 25 2022 - 15:28:58 CDT)
• Color error on loading
  • John Stone (Wed Mar 03 2004 - 09:58:20 CST)
  • Olaf Lenz (Wed Mar 03 2004 - 03:12:02 CST)
  • John Stone (Tue Mar 02 2004 - 17:24:45 CST)
  • Josh Ward (Tue Mar 02 2004 - 14:30:51 CST)
• color gradient based on the sequence
  • Hyun (Thu Feb 12 2015 - 17:15:10 CST)
  • John Stone (Thu Feb 12 2015 - 16:02:40 CST)
  • Hyun (Thu Feb 12 2015 - 13:41:01 CST)
• Color of bond betwen atoms with different colors
  • Axel Kohlmeyer (Fri May 16 2008 - 16:35:50 CDT)
  • Alberto Torres (Fri May 16 2008 - 15:35:40 CDT)
• color problem with Ati Fire GL E1
  • Luis Gracia (Fri Mar 05 2004 - 19:46:32 CST)
  • Luis Gracia (Fri Mar 05 2004 - 19:50:20 CST)
  • Benjamin Goldsteen (Wed Mar 03 2004 - 22:23:31 CST)
  • John Stone (Wed Mar 03 2004 - 21:02:04 CST)
  • Luis Gracia (Wed Mar 03 2004 - 16:45:19 CST)
• color problem with tachyon
  • John Stone (Wed Mar 13 2013 - 11:53:23 CDT)
  • Rejwan (Wed Mar 13 2013 - 11:37:43 CDT)
  • John Stone (Tue Mar 12 2013 - 14:21:40 CDT)
  • Rejwan (Tue Mar 12 2013 - 10:36:40 CDT)
• Color problem.
  • Axel Kohlmeyer (Wed May 13 2009 - 17:45:44 CDT)
  • John Stone (Wed May 13 2009 - 16:17:12 CDT)
  • knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
• color protein based on an event during a trajectory
  • Axel Kohlmeyer (Wed Jun 07 2006 - 23:24:40 CDT)
  • Leonardo G. Trabuco (Wed Jun 07 2006 - 22:14:41 CDT)
  • Brian Kidd (Wed Jun 07 2006 - 21:33:39 CDT)
• Color scale bar
  • John Stone (Thu Feb 08 2018 - 14:08:04 CST)
  • Malvika K (Thu Feb 08 2018 - 11:15:46 CST)
• Color Scale Data Range
  • Weiqiang Wang (Tue May 29 2007 - 17:46:31 CDT)
  • Weiqiang Wang (Tue May 29 2007 - 17:08:16 CDT)
  • Axel Kohlmeyer (Mon Feb 27 2006 - 08:20:34 CST)
  • Vlad Cojocaru (Mon Feb 27 2006 - 05:28:18 CST)
  • Vlad Cojocaru (Mon Feb 27 2006 - 05:25:43 CST)
• Color scale data range for coloring by timestep
  • Jérôme Hénin (Mon Jan 21 2013 - 08:25:37 CST)
• color scale definitions with more than three colors?
  • Axel Kohlmeyer (Thu Jul 31 2014 - 13:19:31 CDT)
  • John Stone (Thu Jul 31 2014 - 12:58:37 CDT)
  • Brian Radak (Thu Jul 31 2014 - 12:38:49 CDT)
• color sidechains differently
  • Axel Kohlmeyer (Tue Jun 14 2011 - 22:21:07 CDT)
  • Magnus Andersson (Tue Jun 14 2011 - 21:30:10 CDT)
• Color specific frames with specific colors in a trajectory
  • Josh Vermaas (Sun Aug 02 2020 - 16:44:16 CDT)
  • Ameya Harmalkar (Sat Aug 01 2020 - 17:58:24 CDT)
• Color surfaces by electrostatic potential
  • John Stone (Thu Nov 16 2006 - 17:18:24 CST)
  • Mihaly Mezei (Thu Nov 16 2006 - 17:06:06 CST)
• color the surface with electrostatic potential value
  • Axel Kohlmeyer (Thu Apr 28 2005 - 01:12:24 CDT)
  • Michel Espinoza-Fonseca (Wed Apr 27 2005 - 18:02:31 CDT)
  • Yongcheng Zhou (Wed Apr 27 2005 - 17:12:29 CDT)
• color trajectory using specific values rather than color scale
  • Joshua A. Anderson (Mon Jun 27 2011 - 11:50:44 CDT)
  • Jérôme Hénin (Mon Jun 27 2011 - 11:20:41 CDT)
  • Axel Kohlmeyer (Mon Jun 27 2011 - 10:32:51 CDT)
  • John Stone (Mon Jun 27 2011 - 10:42:31 CDT)
  • Brian Puchala (Mon Jun 27 2011 - 09:55:05 CDT)
• Color Transition in VMD
  • maxim todoru (Sat Nov 13 2021 - 03:30:11 CST)
  • Axel Kohlmeyer (Sun Nov 14 2021 - 08:46:55 CST)
  • maxim todoru (Fri Nov 12 2021 - 22:20:18 CST)
  • maxim todoru (Fri Nov 12 2021 - 20:43:41 CST)
  • Axel Kohlmeyer (Sun Nov 14 2021 - 02:44:41 CST)
  • Axel Kohlmeyer (Sat Nov 13 2021 - 18:42:24 CST)
  • Axel Kohlmeyer (Sat Nov 13 2021 - 16:32:52 CST)
  • maxim todoru (Sat Nov 13 2021 - 15:09:15 CST)
  • maxim todoru (Fri Nov 12 2021 - 15:23:26 CST)
  • John Stone (Tue Nov 09 2021 - 15:59:52 CST)
  • Vermaas, Josh (Sat Nov 06 2021 - 13:22:11 CDT)
  • maxim todoru (Sat Nov 06 2021 - 11:49:34 CDT)
  • Giacomo Fiorin (Sat Nov 06 2021 - 10:30:33 CDT)
  • maxim todoru (Sat Nov 06 2021 - 09:46:26 CDT)
• color update for xyz trajectory
  • John Stone (Thu Mar 12 2009 - 14:57:03 CDT)
  • Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
• Color wheel gradient
  • jonathan (Fri Mar 25 2011 - 09:03:34 CDT)
  • John Stone (Thu Mar 24 2011 - 22:14:38 CDT)
  • Jonathan KHAO (Tue Mar 22 2011 - 12:57:08 CDT)
• color with name
  • Andrew Fenley (Fri Sep 16 2011 - 16:11:17 CDT)
  • John Stone (Fri Sep 16 2011 - 13:32:39 CDT)
  • Yamei (Fri Sep 16 2011 - 11:56:03 CDT)
• color: negative values
  • John Stone (Sat Aug 12 2006 - 14:50:14 CDT)
  • Zu Thur Yew (Sat Aug 12 2006 - 14:30:37 CDT)
• colorid
  • John Stone (Wed Dec 07 2005 - 10:17:58 CST)
  • Luc Moulinier (Wed Dec 07 2005 - 07:27:35 CST)
• coloring
  • Axel Kohlmeyer (Fri Dec 30 2022 - 19:16:49 CST)
  • Fateme Aghaei (Fri Dec 30 2022 - 15:45:45 CST)
• coloring according to charge of residues
  • Giovanni Bellesia (Mon May 12 2008 - 10:58:45 CDT)
  • OZGE ENGIN (Mon May 12 2008 - 10:05:33 CDT)
• coloring atoms based on max bond length; Need help with bond retrieval
  • Vikas Varshney (Tue Oct 16 2012 - 13:37:55 CDT)
  • Vikas Varshney (Tue Oct 16 2012 - 11:51:51 CDT)
  • Axel Kohlmeyer (Tue Oct 16 2012 - 10:33:57 CDT)
  • Vikas Varshney (Tue Oct 16 2012 - 10:11:24 CDT)
  • Axel Kohlmeyer (Mon Oct 15 2012 - 14:12:33 CDT)
  • Vikas Varshney (Mon Oct 15 2012 - 10:53:26 CDT)
• Coloring atoms based on timeframe range?
  • Bjoern Olausson (Fri Apr 23 2010 - 04:01:19 CDT)
  • Nicholas Musolino (Thu Apr 22 2010 - 10:53:08 CDT)
  • Bjoern Olausson (Thu Apr 22 2010 - 10:41:46 CDT)
  • Axel Kohlmeyer (Thu Apr 22 2010 - 10:11:05 CDT)
  • Joseph Bylund (Thu Apr 22 2010 - 10:04:08 CDT)
  • John Stone (Thu Apr 22 2010 - 10:11:43 CDT)
  • Bjoern Olausson (Thu Apr 22 2010 - 08:51:34 CDT)
• Coloring atoms by a general scalar
  • Heidenreich, Joseph David (Thu Jul 02 2009 - 14:17:25 CDT)
  • Axel Kohlmeyer (Wed Jul 01 2009 - 08:12:52 CDT)
  • Pawel Kedzierski (Wed Jul 01 2009 - 04:27:32 CDT)
  • Axel Kohlmeyer (Tue Jun 30 2009 - 12:53:26 CDT)
  • Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
• Coloring based on POS
  • John Stone (Thu Mar 11 2004 - 10:16:19 CST)
  • Justin Gullingsrud (Thu Mar 11 2004 - 08:18:16 CST)
  • Justin Gullingsrud (Thu Mar 11 2004 - 08:23:31 CST)
  • DongHoon Chung (Thu Mar 11 2004 - 03:11:40 CST)
• Coloring bonds in VMD
  • John Stone (Mon Oct 08 2012 - 12:42:49 CDT)
  • Mingchao Wang (Mon Oct 08 2012 - 01:24:21 CDT)
• coloring bonds on the same segments differently from those between segments
  • lam nguyen (Fri Oct 21 2011 - 17:06:35 CDT)
  • Joseph Bylund (Thu Oct 20 2011 - 20:13:59 CDT)
  • Axel Kohlmeyer (Thu Oct 20 2011 - 20:10:23 CDT)
  • lam nguyen (Thu Oct 20 2011 - 19:07:42 CDT)
• coloring by atom type
  • Rogan Carr (Sat Apr 18 2009 - 16:53:39 CDT)
  • Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
• Coloring by BETA not updating per frame
  • David Kingsbury (Sun Jul 24 2005 - 23:39:25 CDT)
  • David Kingsbury (Sun Jul 24 2005 - 20:45:47 CDT)
  • Axel Kohlmeyer (Sun Jul 24 2005 - 02:29:44 CDT)
  • David Kingsbury (Sat Jul 23 2005 - 11:16:09 CDT)
• coloring by charge
  • John Stone (Wed Oct 29 2003 - 13:46:01 CST)
  • suzie.k.hight.1 (Wed Oct 29 2003 - 00:26:42 CST)
• coloring by difference in beta factors
  • Axel Kohlmeyer (Tue Dec 01 2009 - 07:30:43 CST)
  • cubellis_at_unina.it (Tue Dec 01 2009 - 06:25:28 CST)
• coloring by gradient
  • Rodolfo Pereyra (Thu Apr 28 2011 - 15:36:51 CDT)
• Coloring by RMSD during trajectory
  • Joseph Bylund (Wed Feb 01 2012 - 23:49:19 CST)
  • John Stone (Wed Feb 01 2012 - 23:14:38 CST)
  • John Stone (Thu Feb 02 2012 - 00:00:15 CST)
  • Joseph Bylund (Fri Jan 06 2012 - 11:40:27 CST)
• Coloring by type?
  • Akiyama, Jotaro (Fri Nov 12 2004 - 02:45:10 CST)
  • John Stone (Thu Nov 11 2004 - 21:51:00 CST)
  • Akiyama, Jotaro (Thu Nov 11 2004 - 18:56:02 CST)
  • John Stone (Thu Nov 11 2004 - 10:57:55 CST)
  • Akiyama, Jotaro (Mon Nov 08 2004 - 03:06:34 CST)
• Coloring different isosurfaces with user-defined colors
  • Ellis, Matthew (Sat Feb 02 2019 - 04:38:32 CST)
• coloring different polymers with different (random) colors
  • Valerio Sorichetti (Mon Jul 10 2017 - 10:32:44 CDT)
  • Axel Kohlmeyer (Mon Jul 10 2017 - 09:46:33 CDT)
  • Valerio Sorichetti (Mon Jul 10 2017 - 09:05:57 CDT)
  • Tim Moore (Mon Jul 10 2017 - 08:44:41 CDT)
  • Valerio Sorichetti (Mon Jul 10 2017 - 04:13:03 CDT)
• coloring HIE, HIP, HID: sorry ... I got it
  • Vlad Cojocaru (Mon Oct 30 2006 - 07:12:12 CST)
• Coloring lots of Groups
  • Benjamin Kaduk (Thu Dec 06 2012 - 13:48:37 CST)
  • Doran Bennett (Thu Dec 06 2012 - 10:25:06 CST)
• coloring method
  • John Stone (Tue Dec 06 2005 - 16:40:15 CST)
  • Guanglei Cui (Tue Dec 06 2005 - 12:48:55 CST)
  • Fei Xu (Thu Feb 28 2002 - 15:44:11 CST)
• coloring method User
  • John Stone (Mon Mar 22 2004 - 11:45:35 CST)
  • Cosmin ROMAN (Mon Mar 22 2004 - 11:56:03 CST)
  • John Stone (Mon Mar 22 2004 - 11:18:35 CST)
  • Cosmin ROMAN (Sun Mar 21 2004 - 09:05:23 CST)
• coloring method User for graphics like tubes?
  • John Stone (Mon Apr 30 2018 - 22:07:41 CDT)
  • Vermaas, Joshua (Mon Apr 30 2018 - 08:06:49 CDT)
  • Daniel Möller (Mon Apr 30 2018 - 04:39:25 CDT)
• coloring method)
  • John Stone (Fri Mar 01 2002 - 15:01:54 CST)
• coloring method: user
  • John Stone (Fri Jun 20 2003 - 10:03:15 CDT)
  • Jan Saam (Fri Jun 20 2003 - 06:56:26 CDT)
• Coloring mols by carbon only
  • John Stone (Mon Jul 09 2001 - 10:53:28 CDT)
  • Niklas.Blomberg_at_astrazeneca.com (Mon Jul 09 2001 - 04:09:32 CDT)
• coloring names
  • John Stone (Fri Mar 23 2007 - 14:01:05 CDT)
  • Fred Moore (Fri Mar 23 2007 - 13:24:37 CDT)
• Coloring of a trajectory with atom types more than 9
  • Amin Koochaki (Thu Mar 29 2018 - 14:58:09 CDT)
  • Vermaas, Joshua (Thu Mar 29 2018 - 12:19:41 CDT)
  • Amin Koochaki (Thu Mar 29 2018 - 05:12:36 CDT)
• coloring of an item created by canvas
  • Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
• Coloring of atoms/molecules
  • John Stone (Fri Nov 01 2002 - 21:18:42 CST)
  • #WONG CHEE HOW# (Thu Oct 31 2002 - 23:24:13 CST)
• Coloring of basins
  • John Stone (Mon Apr 06 2015 - 11:36:37 CDT)
  • Maria Ivanova (Tue Mar 24 2015 - 19:48:10 CDT)
• coloring of trajectory
  • John Stone (Thu Mar 11 2004 - 14:29:47 CST)
  • Florian Barth (Thu Mar 11 2004 - 11:56:38 CST)
  • John Stone (Wed Mar 10 2004 - 11:19:55 CST)
  • Florian Barth (Wed Mar 10 2004 - 07:10:27 CST)
• Coloring particular atom with particular index
  • Töre Han Balta (Thu Dec 08 2011 - 16:15:26 CST)
  • Ajasja LjubetiÄ� (Wed Dec 07 2011 - 12:57:42 CST)
  • Töre Han Balta (Wed Dec 07 2011 - 11:51:00 CST)
• coloring residues with VMD
  • John Stone (Wed Nov 29 2006 - 14:55:07 CST)
  • christopher (Wed Nov 29 2006 - 14:41:37 CST)
• Coloring rings with paperchain
  • Xiang Gao (Tue Oct 19 2021 - 02:33:01 CDT)
  • Vermaas, Josh (Mon Oct 18 2021 - 19:23:39 CDT)
  • Xiang Gao (Mon Oct 18 2021 - 17:24:08 CDT)
  • John Stone (Mon Oct 18 2021 - 17:05:36 CDT)
  • Xiang Gao (Mon Oct 18 2021 - 16:47:56 CDT)
• coloring scheme in "VolumeSlice"
  • Walter Huang (Sat Jan 17 2015 - 21:08:02 CST)
• Coloring Scheme Spectrum
  • McGuire, Kelly (Mon May 07 2018 - 11:57:26 CDT)
  • Andrew Dalke (Mon May 07 2018 - 11:10:24 CDT)
  • McGuire, Kelly (Mon May 07 2018 - 09:47:44 CDT)
  • Giacomo Fiorin (Mon May 07 2018 - 07:33:02 CDT)
  • McGuire, Kelly (Sun May 06 2018 - 23:34:32 CDT)
  • John Stone (Sun May 06 2018 - 21:20:13 CDT)
  • John Stone (Sun May 06 2018 - 21:13:55 CDT)
  • McGuire, Kelly (Sat May 05 2018 - 09:49:09 CDT)
• Coloring Sections of Peptides
  • Justin Gullingsrud (Wed May 16 2001 - 15:58:26 CDT)
  • B. Bennion (Wed May 16 2001 - 15:26:01 CDT)
• coloring selected chains and residues
  • Axel Kohlmeyer (Mon Jul 30 2007 - 19:00:55 CDT)
  • karan uppal (Mon Jul 30 2007 - 18:58:05 CDT)
• coloring selection
  • John Stone (Mon Apr 26 2004 - 18:27:50 CDT)
  • Ioana Cozmuta (Mon Apr 26 2004 - 15:19:25 CDT)
• coloring surface by volume
  • John Stone (Fri Sep 02 2005 - 17:12:18 CDT)
  • Dan Strahs (Fri Aug 26 2005 - 20:05:55 CDT)
• coloring trajectory depending on coordination number
  • Mgr. Lubos Vrbka (Thu Apr 27 2006 - 05:06:46 CDT)
  • Mgr. Lubos Vrbka (Sun Dec 18 2005 - 08:24:02 CST)
  • John Stone (Fri Dec 09 2005 - 10:57:18 CST)
  • Mgr. Lubos Vrbka (Fri Dec 09 2005 - 10:41:37 CST)
• coloring waters
  • caldwell_at_heimdal.compchem.ucsf.edu (Fri Jun 20 2003 - 12:06:32 CDT)
  • John Stone (Thu Jun 19 2003 - 19:50:02 CDT)
  • caldwell_at_heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 18:25:04 CDT)
  • Sanjeev B.S. (Thu Jun 19 2003 - 14:55:14 CDT)
  • caldwell_at_heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 12:51:05 CDT)
• coloring way in a volume slice
  • John Stone (Fri Mar 11 2005 - 17:17:37 CST)
  • John Stone (Sun Mar 06 2005 - 21:36:34 CST)
  • YAMAZAKI Takeshi (Fri Mar 04 2005 - 18:26:33 CST)
• Coloring with an XYZ file
  • John Stone (Wed May 05 2004 - 01:18:01 CDT)
  • Axel Kohlmeyer (Wed May 05 2004 - 01:28:00 CDT)
  • Edward J. Smiley Jr. (Tue May 04 2004 - 15:25:50 CDT)
• coloring.tlc script
  • John Stone (Fri Jul 09 2004 - 16:48:29 CDT)
• Coloring/material of ply files
  • Bart Bruininks (Tue Nov 15 2022 - 09:29:59 CST)
• colormaps available for color by volume
  • Thomas Sommerfeld (Fri Sep 20 2019 - 15:01:11 CDT)
  • John Stone (Fri Sep 20 2019 - 08:57:18 CDT)
  • John Stone (Thu Sep 19 2019 - 09:37:44 CDT)
  • Thomas Sommerfeld (Thu Sep 19 2019 - 09:26:14 CDT)
• colors
  • John Stone (Thu Mar 22 2007 - 10:00:06 CDT)
  • Luc Moulinier (Thu Mar 22 2007 - 03:55:26 CDT)
• colors changed in animation
  • yifat b (Tue Aug 26 2003 - 05:25:18 CDT)
  • John Stone (Mon Aug 25 2003 - 10:32:47 CDT)
  • yifat b (Mon Aug 25 2003 - 10:00:41 CDT)
• Colors in VMd graphics
  • John Stone (Mon Oct 19 2020 - 14:38:45 CDT)
  • Remya Ann (Sun Oct 18 2020 - 05:37:25 CDT)
  • Remya Ann (Sun Oct 18 2020 - 02:36:33 CDT)
  • Ashar Malik (Sat Oct 17 2020 - 22:22:49 CDT)
  • Remya Ann (Sat Oct 17 2020 - 13:46:52 CDT)
• Colour coordinating atoms in a trajectory by Coordination Number
  • Samuel Jobbins (Mon Mar 30 2015 - 11:28:54 CDT)
  • Josh Vermaas (Mon Mar 30 2015 - 11:14:53 CDT)
  • Axel Kohlmeyer (Mon Mar 30 2015 - 10:59:18 CDT)
  • Samuel Jobbins (Mon Mar 30 2015 - 10:13:00 CDT)
  • Axel Kohlmeyer (Thu Mar 26 2015 - 12:08:48 CDT)
  • Josh Vermaas (Thu Mar 26 2015 - 12:12:29 CDT)
  • Samuel Jobbins (Thu Mar 26 2015 - 10:57:51 CDT)
• colour residues
  • Eric H. Lee (Mon Oct 12 2009 - 21:31:18 CDT)
  • Leonardo Trabuco (Mon Oct 12 2009 - 18:56:31 CDT)
  • Axel Kohlmeyer (Mon Oct 12 2009 - 19:05:13 CDT)
  • Eric H. Lee (Mon Oct 12 2009 - 18:26:11 CDT)
  • Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
• coloured surface
  • Ivana (Sat May 23 2020 - 12:51:01 CDT)
  • John Stone (Sat May 23 2020 - 02:09:17 CDT)
  • Ivana (Sun May 03 2020 - 11:49:03 CDT)
• Colouring
  • Justin Gullingsrud (Wed Jun 18 2003 - 09:22:42 CDT)
  • #WONG CHEE HOW# (Wed Jun 18 2003 - 01:02:39 CDT)
• Colouring Atoms according to the centro-symmetric parameter
  • Axel Kohlmeyer (Thu Mar 01 2007 - 13:45:36 CST)
  • Epiphaniou, Nicholas (Thu Mar 01 2007 - 12:59:00 CST)
• Colouring atoms according to their q4 or q6 values
  • Axel Kohlmeyer (Tue Jun 23 2015 - 06:53:10 CDT)
  • Kannan Ridings (Tue Jun 23 2015 - 01:12:31 CDT)
• Colouring atoms individually
  • John Stone (Mon Oct 03 2016 - 15:32:26 CDT)
  • Vermaas, Joshua (Fri Sep 30 2016 - 09:53:41 CDT)
  • Albers, Thomas (Thu Sep 29 2016 - 16:31:24 CDT)
• Colouring atoms named with the same first letter
  • Jennifer Williams (Tue Apr 20 2010 - 10:13:04 CDT)
  • John Stone (Fri Apr 16 2010 - 16:42:22 CDT)
  • Joshua Anderson (Fri Apr 16 2010 - 12:25:47 CDT)
  • Axel Kohlmeyer (Fri Apr 16 2010 - 12:03:24 CDT)
  • Joshua Anderson (Fri Apr 16 2010 - 11:09:23 CDT)
  • Jennifer Williams (Fri Apr 16 2010 - 08:15:07 CDT)
• Colouring by velocity component in VMD
  • Axel Kohlmeyer (Mon Oct 29 2012 - 07:18:10 CDT)
  • Michael Doig (Mon Oct 29 2012 - 05:20:27 CDT)
• Colouring rings in paperchain
  • gargiulo (Wed Feb 27 2013 - 02:52:53 CST)
  • John Stone (Tue Feb 26 2013 - 16:19:28 CST)
  • gargiulo (Wed Feb 06 2013 - 09:04:01 CST)
• colvars module
  • Stefano Guglielmo (Mon Jan 30 2017 - 17:26:38 CST)
  • Stefano Guglielmo (Mon Jan 30 2017 - 16:05:23 CST)
  • Stefano Guglielmo (Mon Jan 30 2017 - 09:06:14 CST)
  • Jérôme Hénin (Mon Jan 30 2017 - 07:13:49 CST)
  • Stefano Guglielmo (Sun Jan 29 2017 - 17:40:53 CST)
• Colvars module doesn't work
  • Vermaas, Joshua (Fri Jan 26 2018 - 17:39:32 CST)
  • Vermaas, Joshua (Fri Jan 26 2018 - 15:14:46 CST)
  • Giacomo Fiorin (Fri Jan 26 2018 - 14:58:35 CST)
  • Michael Morin (Fri Jan 26 2018 - 14:11:29 CST)
• colvars problem - different values in VMD and NAMD
  • Laura Joana (Wed Apr 20 2016 - 09:53:13 CDT)
  • Laura Joana (Tue Apr 19 2016 - 04:17:09 CDT)
  • Laura Joana (Mon Apr 18 2016 - 09:44:06 CDT)
  • Laura Joana (Mon Apr 18 2016 - 09:05:44 CDT)
  • Laura Joana (Mon Apr 18 2016 - 08:31:40 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 08:40:03 CDT)
  • Laura Joana (Mon Apr 18 2016 - 08:24:25 CDT)
  • Laura Joana (Mon Apr 18 2016 - 07:53:44 CDT)
  • Laura Joana (Mon Apr 18 2016 - 07:52:01 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 07:40:59 CDT)
  • Laura Joana (Mon Apr 18 2016 - 07:36:54 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 07:20:25 CDT)
  • Laura Joana (Sat Apr 16 2016 - 07:34:20 CDT)
  • Laura Joana (Sat Apr 16 2016 - 05:16:22 CDT)
  • John Stone (Fri Apr 15 2016 - 12:22:00 CDT)
  • Jérôme Hénin (Fri Apr 15 2016 - 11:50:32 CDT)
  • Philippe Bopp (Fri Apr 15 2016 - 11:29:02 CDT)
  • Jérôme Hénin (Fri Apr 15 2016 - 09:50:05 CDT)
  • Karteek Kumar (Fri Apr 15 2016 - 09:50:19 CDT)
  • Laura Joana (Fri Apr 15 2016 - 09:19:09 CDT)
• Combination of bigdcd.tcl and topotools plugin
  • Sofya Lushchekina (Wed Dec 04 2013 - 10:34:47 CST)
• combine .pdb files to make movie
  • Sarah MohammadiNejad (Fri Jul 19 2013 - 07:53:01 CDT)
  • Axel Kohlmeyer (Fri Jul 19 2013 - 07:25:37 CDT)
  • Sarah MohammadiNejad (Fri Jul 19 2013 - 06:35:57 CDT)
• Combine Drawing Methods - Cartoon and Disulfide Bonds
  • Chang, Christopher (Tue Jun 14 2005 - 18:43:48 CDT)
  • Paul R Brenner (Tue Jun 14 2005 - 17:00:12 CDT)
• combine together two PBD/PSF files
  • Dr. Luis Rosales Leon (Wed Nov 07 2007 - 18:50:50 CST)
  • Alessio Alexiadis (Wed Nov 07 2007 - 07:38:42 CST)
• Combine volmap occupancy maps
  • John Stone (Wed Jul 17 2013 - 09:50:33 CDT)
  • Axel Kohlmeyer (Wed Jul 17 2013 - 02:31:04 CDT)
  • Andrei Tudor (Mon Jul 15 2013 - 14:44:54 CDT)
• combine.tcl
  • Axel Kohlmeyer (Mon Dec 17 2012 - 10:30:47 CST)
  • yp sun (Mon Dec 17 2012 - 08:52:24 CST)
  • John Stone (Wed Nov 22 2006 - 12:12:14 CST)
  • annalisa_at_biotec.tu-dresden.de (Tue Nov 21 2006 - 15:06:50 CST)
• combine.tcl error
  • Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
  • John Stone (Wed Oct 17 2007 - 22:11:59 CDT)
  • Francesco Pietra (Sun Oct 14 2007 - 03:23:23 CDT)
• combine.tcl membrane plugin
  • Axel Kohlmeyer (Thu Nov 15 2007 - 22:47:21 CST)
  • Francesco Pietra (Thu Nov 15 2007 - 09:50:36 CST)
  • Peter Freddolino (Thu Nov 15 2007 - 09:44:00 CST)
  • Axel Kohlmeyer (Thu Nov 15 2007 - 03:33:31 CST)
  • Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
  • Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
  • Francesco Pietra (Wed Nov 14 2007 - 12:05:12 CST)
• Combined "Within" atom selection
  • John Stone (Tue Oct 12 2010 - 14:59:44 CDT)
  • jonathan (Mon Oct 11 2010 - 11:59:08 CDT)
• Combining fragments for parameterization
  • Daniel Fellner (Sat Oct 31 2020 - 03:15:46 CDT)
  • Emma Wu (Fri Oct 30 2020 - 23:47:35 CDT)
  • Daniel Fellner (Thu Oct 15 2020 - 01:05:34 CDT)
  • Emma Wu (Thu Oct 15 2020 - 00:50:30 CDT)
• Combining multiple psf into one for collagen protein
  • SONAL GAHLAWAT (Mon Apr 17 2023 - 11:42:20 CDT)
• Combining PDB/PSF of Protein and CNT
  • Ajasja LjubetiÄ� (Wed Jul 02 2014 - 07:03:26 CDT)
  • Adam Kells (Wed Jul 02 2014 - 04:15:55 CDT)
• command args to MSMS in VMD
  • John Stone (Tue Nov 05 2002 - 10:27:26 CST)
• command for volume slice?
  • John Stone (Wed May 11 2011 - 11:02:12 CDT)
  • Olaf Lenz (Wed May 11 2011 - 09:11:32 CDT)
  • Jennifer Williams (Wed May 11 2011 - 08:16:25 CDT)
• Command line argument
  • Axel Kohlmeyer (Wed Mar 25 2009 - 10:57:22 CDT)
  • Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
• command line dcd to trr?
  • Axel Kohlmeyer (Fri Jul 06 2007 - 08:26:37 CDT)
  • hori koshii (Thu Jul 05 2007 - 20:46:14 CDT)
• Command line for thickness parameter
  • Cun Zhang (Tue Aug 09 2011 - 07:56:27 CDT)
  • Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 06:00:29 CDT)
  • Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 03:46:46 CDT)
• command line options for video in vmd
  • Remya Ann (Mon Aug 24 2020 - 02:05:49 CDT)
• command line rep creation
  • Salomon Turgman Cohen (Wed Apr 17 2013 - 12:43:08 CDT)
  • Martin, Erik W (Wed Apr 17 2013 - 11:14:26 CDT)
• Command line representation
  • Axel Kohlmeyer (Mon Oct 29 2012 - 07:51:16 CDT)
  • Aronica, Pietro (Mon Oct 29 2012 - 06:57:30 CDT)
• Command line troubles
  • Axel Kohlmeyer (Sat Nov 11 2006 - 17:48:00 CST)
  • Pavan Ghatty (Sat Nov 11 2006 - 16:11:46 CST)
• command measure inertia
  • Vermaas, Josh (Sat Feb 26 2022 - 11:57:31 CST)
  • Alessandro Ruda (Sat Feb 26 2022 - 09:59:14 CST)
• Command not found Error
  • PaweÅ‚ KÄ™dzierski (Fri Feb 15 2013 - 02:03:46 CST)
  • Allison Rossetto (Thu Feb 14 2013 - 11:55:58 CST)
  • John Stone (Thu Feb 14 2013 - 11:05:31 CST)
  • Allison Rossetto (Mon Feb 11 2013 - 16:02:50 CST)
• Command to change background to gradient
  • Axel Kohlmeyer (Fri Nov 30 2007 - 06:15:44 CST)
  • TRINH Minh hieu (Fri Nov 30 2007 - 04:55:27 CST)
• Command to save visualization state.
  • John Stone (Wed Mar 21 2018 - 10:27:25 CDT)
  • sperez14_at_us.es (Wed Mar 21 2018 - 05:47:38 CDT)
• Commandline file processed before vmdrc read in
  • Stefan Kuczera (Wed Jan 25 2017 - 07:35:34 CST)
  • Stefan Kuczera (Tue Jan 24 2017 - 09:47:49 CST)
• Commands runs manually but not as a script
  • CHARLES MCCALLUM (Fri Nov 24 2023 - 19:23:05 CST)
  • Diego Gomes (Tue Nov 07 2023 - 09:19:01 CST)
  • Bill McIntyre (Fri Nov 03 2023 - 10:58:11 CDT)
• Compare "measure rgyr" to SAXS
  • Martin, Erik W (Tue Jun 04 2013 - 14:37:28 CDT)
• Comparing distance.tcl/bigdcd.tcl with resid/CA vs index
  • Francesco Pietra (Thu Jun 04 2015 - 12:00:24 CDT)
  • Josh Vermaas (Thu Jun 04 2015 - 10:46:12 CDT)
  • Francesco Pietra (Thu Jun 04 2015 - 09:32:47 CDT)
• Comparing Structures with Multiseq and Qres
  • Anurag Sethi (Wed Apr 16 2014 - 10:41:02 CDT)
  • Anurag Sethi (Mon Apr 07 2014 - 19:37:48 CDT)
  • Donald Karr (Thu Apr 03 2014 - 10:33:55 CDT)
• Compatibility with Orcad (PSpice) ?
  • John Stone (Sun Sep 19 2010 - 19:35:12 CDT)
  • A. M. Carmen Pérez (Thu Sep 16 2010 - 05:06:29 CDT)
• Compilation
  • John Stone (Thu May 25 2006 - 14:35:31 CDT)
  • John Stone (Thu May 25 2006 - 14:31:03 CDT)
  • John Stone (Thu May 25 2006 - 14:24:57 CDT)
  • Axel Kohlmeyer (Thu May 25 2006 - 05:20:42 CDT)
  • angel (Wed May 24 2006 - 17:44:39 CDT)
• Compilation and installation of VMD on Mac OS Catalina
  • fabio trovato (Sun Nov 03 2019 - 05:36:37 CST)
• compilation error
  • John Stone (Fri May 10 2002 - 10:31:05 CDT)
  • Todd J. Furlong (Fri May 10 2002 - 10:13:56 CDT)
  • Tommy Wang (Fri May 10 2002 - 07:52:24 CDT)
• Compilation error: stride_LINUXAMD64', surf_LINUXAMD64, tachyon_LINUXAMD64 : No such file or directory
  • Axel Kohlmeyer (Thu Apr 22 2021 - 15:34:04 CDT)
  • Chintapalli, Sree vamsee (Thu Apr 22 2021 - 14:45:29 CDT)
• compilation from source: first attempt failed
  • Bogdan Costescu (Fri Dec 09 2005 - 10:30:07 CST)
  • John Stone (Fri Dec 09 2005 - 09:46:08 CST)
  • Vlad Cojocaru (Fri Dec 09 2005 - 08:01:34 CST)
• compilation from source: make error message
  • John Stone (Mon Dec 12 2005 - 15:36:49 CST)
  • Cojocaru,Vlad (Mon Dec 12 2005 - 15:06:08 CST)
  • John Stone (Mon Dec 12 2005 - 10:02:59 CST)
  • Bogdan Costescu (Mon Dec 12 2005 - 06:04:24 CST)
  • Vlad Cojocaru (Mon Dec 12 2005 - 03:59:36 CST)
• Compilation issues with tcl.h
  • John Stone (Tue Mar 25 2003 - 22:33:02 CST)
  • Paul Darwen (Tue Mar 25 2003 - 21:36:27 CST)
• compilation of vmd 1.8.7 source
  • John Stone (Tue Jul 20 2010 - 10:17:44 CDT)
  • Ian Stokes-Rees (Tue Jul 20 2010 - 10:07:45 CDT)
  • John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
  • Vlad Cojocaru (Tue Jul 20 2010 - 09:22:15 CDT)
• compilation of vmd from source on armv8 RK3399 processor
  • Pawel Kedzierski (Tue Feb 11 2020 - 06:33:11 CST)
  • Pawel Kedzierski (Fri Feb 07 2020 - 02:19:13 CST)
  • John Stone (Wed Feb 05 2020 - 15:22:41 CST)
  • Pawel Kedzierski (Tue Feb 04 2020 - 03:01:29 CST)
  • Pawel Kedzierski (Sat Feb 01 2020 - 05:06:47 CST)
  • Joey Gehring (Fri Jan 31 2020 - 22:54:40 CST)
• compilation problem using vmd1.8 alpha
  • John Stone (Thu May 30 2002 - 20:11:30 CDT)
  • Tommy Wang (Thu May 30 2002 - 19:52:15 CDT)
• Compilation propblem
  • John Stone (Mon Jun 19 2006 - 13:19:16 CDT)
  • angel (Mon Jun 19 2006 - 12:26:52 CDT)
• compilation with python 2.5 and file permissions from the CVS repository
  • John Stone (Mon Apr 14 2008 - 10:26:18 CDT)
  • Vlad Cojocaru (Mon Apr 14 2008 - 05:43:00 CDT)
  • Axel Kohlmeyer (Mon Apr 14 2008 - 05:16:19 CDT)
  • Vlad Cojocaru (Mon Apr 14 2008 - 05:16:25 CDT)
  • Vlad Cojocaru (Mon Apr 14 2008 - 03:26:35 CDT)
  • Axel Kohlmeyer (Sun Apr 13 2008 - 15:00:12 CDT)
  • John Stone (Sun Apr 13 2008 - 15:29:57 CDT)
  • Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
  • Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
  • Cojocaru,Vlad (Sun Apr 13 2008 - 12:24:52 CDT)
• compilation: forgot to say about Python
  • Vlad Cojocaru (Fri Dec 09 2005 - 08:06:39 CST)
• Compile / Configure VMD with the Oculus Rift DK2
  • Jan Janssen (Thu Nov 03 2016 - 02:42:43 CDT)
• compile a plugin source code
  • dbg (Fri Apr 13 2007 - 06:29:59 CDT)
• compile catdcd.c
  • Sichun Yang (Fri Apr 23 2004 - 19:06:04 CDT)
  • Sichun Yang (Fri Apr 23 2004 - 18:38:56 CDT)
• compile error
  • Axel Kohlmeyer (Tue May 18 2010 - 06:27:22 CDT)
  • Liu Shiyong (Tue May 18 2010 - 04:40:12 CDT)
• Compile from Source Crashes 5/11/04
  • John Stone (Wed May 12 2004 - 18:41:32 CDT)
  • Brian Bennion (Tue May 11 2004 - 16:26:33 CDT)
  • Brian Bennion (Tue May 11 2004 - 11:22:20 CDT)
  • Stewart Dickson (Tue May 11 2004 - 09:51:09 CDT)
• Compile of OpenGL shader vmdsphere failed
  • John Stone (Tue May 02 2006 - 10:26:41 CDT)
  • Marc Petitmermet (Tue May 02 2006 - 05:45:03 CDT)
• compile problem for VMD1.8.6: OpenGLRenderer.C
  • Axel Kohlmeyer (Sat Mar 08 2008 - 20:51:50 CST)
  • Dan Strahs (Sat Mar 08 2008 - 20:17:23 CST)
• Compile VMD
  • saeed (Thu Mar 06 2014 - 06:37:06 CST)
  • John Stone (Wed Mar 05 2014 - 10:33:35 CST)
  • saeed (Wed Mar 05 2014 - 09:52:59 CST)
  • Knut Jørgen Bjuland (Wed Sep 22 2010 - 11:15:13 CDT)
  • Cun Zhang (Thu Sep 16 2010 - 20:25:45 CDT)
  • Axel Kohlmeyer (Wed Sep 15 2010 - 13:09:28 CDT)
  • Knut Jørgen Bjuland (Wed Sep 15 2010 - 11:54:17 CDT)
• compile VMD 1.9 with FLTK 1.3
  • Axel Kohlmeyer (Mon Nov 21 2011 - 08:37:31 CST)
  • Vlad Cojocaru (Mon Nov 21 2011 - 07:45:24 CST)
  • Vlad Cojocaru (Mon Nov 21 2011 - 06:37:19 CST)
• compile vmd for windows 10
  • John Stone (Wed Oct 14 2020 - 08:58:48 CDT)
  • omid gh (Wed Oct 14 2020 - 05:35:42 CDT)
  • John Stone (Tue Oct 13 2020 - 14:36:56 CDT)
  • Axel Kohlmeyer (Tue Sep 22 2020 - 09:07:27 CDT)
  • Raman Preet Singh (Tue Sep 22 2020 - 07:33:20 CDT)
  • omid gh (Tue Sep 22 2020 - 06:43:36 CDT)
• compile VMD on freebsd 4.8
  • brad noyes (Tue Sep 09 2003 - 21:05:44 CDT)
  • John Stone (Tue Sep 09 2003 - 19:43:33 CDT)
  • brad noyes (Tue Sep 09 2003 - 16:43:10 CDT)
  • tscheng_at_ic.sunysb.edu (Fri Jul 25 2003 - 07:56:03 CDT)
  • brad noyes (Thu Jul 24 2003 - 17:54:42 CDT)
  • tscheng_at_ic.sunysb.edu (Thu Jul 24 2003 - 08:00:42 CDT)
  • brad noyes (Wed Jul 23 2003 - 20:59:27 CDT)
  • Tsu-Fan Cheng (Wed Jul 23 2003 - 14:43:26 CDT)
  • John Stone (Wed Jul 23 2003 - 14:27:04 CDT)
  • Tsu-Fan Cheng (Wed Jul 23 2003 - 14:23:12 CDT)
• compile VMD with cuda 6.5.14
  • Vlad Cojocaru (Thu Oct 23 2014 - 05:33:43 CDT)
  • Vlad Cojocaru (Thu Oct 23 2014 - 04:47:31 CDT)
  • John Stone (Wed Oct 22 2014 - 11:28:35 CDT)
  • Vlad Cojocaru (Wed Oct 22 2014 - 09:39:04 CDT)
• compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory
  • Diego Gomes (Wed Jul 31 2024 - 10:19:04 CDT)
  • Chris Taylor (Fri Jul 26 2024 - 22:11:53 CDT)
  • Chris Taylor (Fri Jul 26 2024 - 22:15:58 CDT)
  • Vermaas, Josh (Fri Jul 26 2024 - 10:21:01 CDT)
  • Diego Gomes (Fri Jul 26 2024 - 09:31:43 CDT)
  • Chris Taylor (Fri Jul 26 2024 - 00:22:45 CDT)
• compile windows binary in linux
  • Axel Kohlmeyer (Mon Sep 13 2010 - 15:13:13 CDT)
  • John Stone (Mon Sep 13 2010 - 14:28:01 CDT)
  • CLEMENTS, ROBERT (Mon Sep 13 2010 - 14:17:51 CDT)
• compiled failed
  • Axel Kohlmeyer (Mon Nov 26 2012 - 15:41:09 CST)
  • Albert (Mon Nov 26 2012 - 12:16:28 CST)
• Compiled version for MacOSX with non-standard options
  • John Stone (Wed Apr 23 2008 - 23:45:05 CDT)
  • Marc Baaden (Fri Apr 18 2008 - 14:21:30 CDT)
  • John Stone (Fri Apr 18 2008 - 12:55:49 CDT)
  • Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
  • John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
  • Delalande (Thu Apr 17 2008 - 08:37:14 CDT)
• Compiling 64bit VMD
  • Nima Nouri (Wed Feb 26 2014 - 03:15:31 CST)
• Compiling CATDCD and VMD plugins on AIX5.2
  • Fiona Reid (Thu Oct 20 2005 - 10:44:32 CDT)
  • Fiona Reid (Thu Oct 20 2005 - 04:13:27 CDT)
• Compiling CUDAMarchingCubes.cu build error
  • Chris Taylor (Thu Jul 25 2024 - 23:08:47 CDT)
  • Josh Vermaas (Thu Jul 25 2024 - 08:23:05 CDT)
  • Chris Taylor (Wed Jul 24 2024 - 20:14:04 CDT)
  • Vermaas, Josh (Wed Jul 24 2024 - 09:57:02 CDT)
  • Chris Taylor (Tue Jul 23 2024 - 20:02:18 CDT)
  • Vermaas, Josh (Mon Jul 22 2024 - 20:16:50 CDT)
  • Chris Taylor (Sun Jul 21 2024 - 20:53:43 CDT)
• Compiling Fortran bindings for the VMD molfile plugins
  • John Stone (Thu Mar 03 2011 - 13:28:03 CST)
  • John Stone (Wed Mar 02 2011 - 12:46:57 CST)
  • Susana Tomasio (Wed Mar 02 2011 - 10:14:31 CST)
  • John Stone (Wed Mar 02 2011 - 10:07:35 CST)
  • Susana Tomasio (Wed Mar 02 2011 - 09:40:13 CST)
  • John Stone (Tue Mar 01 2011 - 12:32:51 CST)
  • Axel Kohlmeyer (Tue Mar 01 2011 - 12:33:03 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 11:50:03 CST)
  • Axel Kohlmeyer (Tue Mar 01 2011 - 11:23:36 CST)
  • John Stone (Tue Mar 01 2011 - 11:28:30 CST)
  • John Stone (Tue Mar 01 2011 - 10:54:55 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 10:53:49 CST)
  • John Stone (Tue Mar 01 2011 - 10:38:20 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
  • John Stone (Tue Mar 01 2011 - 10:24:32 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 10:16:18 CST)
• Compiling from source on Mac OS X 10.5
  • John Stone (Thu Jul 17 2008 - 17:04:38 CDT)
  • Axel Kohlmeyer (Fri Jun 27 2008 - 14:23:44 CDT)
  • Axel Kohlmeyer (Fri Jun 27 2008 - 13:54:36 CDT)
  • Marylou Kunkle (Fri Jun 27 2008 - 13:29:37 CDT)
  • Marylou Kunkle (Fri Jun 27 2008 - 11:12:37 CDT)
• Compiling NAMD from SRC: Tungsten@NCSA
  • John Stone (Fri Sep 10 2004 - 20:16:25 CDT)
  • Vani Krishna (Fri Sep 10 2004 - 19:54:55 CDT)
• compiling on LINUXAMD64 problem
  • Axel Kohlmeyer (Sun Apr 17 2011 - 11:16:56 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 09:20:16 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 08:51:28 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 08:34:54 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 08:45:41 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 08:27:05 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 08:16:45 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 00:14:59 CDT)
• Compiling on Windows
  • David Joiner (Wed Mar 30 2011 - 10:04:46 CDT)
  • John Stone (Thu Mar 24 2011 - 21:38:45 CDT)
  • David Joiner (Wed Mar 23 2011 - 11:14:26 CDT)
  • David Joiner (Wed Feb 23 2011 - 20:30:48 CST)
  • John Stone (Wed Feb 23 2011 - 10:31:18 CST)
  • David Joiner (Wed Feb 23 2011 - 10:20:35 CST)
  • David Joiner (Tue Feb 22 2011 - 22:06:24 CST)
  • John Stone (Tue Feb 22 2011 - 22:09:56 CST)
  • David Joiner (Mon Feb 21 2011 - 21:42:48 CST)
  • John Stone (Mon Feb 21 2011 - 21:51:33 CST)
  • John Stone (Mon Feb 21 2011 - 21:28:02 CST)
  • David Joiner (Mon Feb 21 2011 - 21:09:09 CST)
  • David Joiner (Sat Feb 19 2011 - 00:07:25 CST)
  • David Joiner (Fri Feb 18 2011 - 22:10:37 CST)
  • John Stone (Fri Feb 18 2011 - 22:19:44 CST)
  • David Joiner (Fri Feb 18 2011 - 15:29:45 CST)
  • John Stone (Fri Feb 18 2011 - 12:29:42 CST)
  • David Joiner (Fri Feb 18 2011 - 12:17:38 CST)
  • John Stone (Fri Feb 18 2011 - 11:57:33 CST)
  • John Stone (Fri Feb 18 2011 - 11:51:14 CST)
  • Ajasja LjubetiÄ� (Fri Feb 18 2011 - 11:07:59 CST)
  • John Stone (Fri Feb 18 2011 - 10:06:44 CST)
  • Ajasja LjubetiÄ� (Fri Feb 18 2011 - 04:03:41 CST)
  • David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
  • John Stone (Thu Feb 17 2011 - 14:40:24 CST)
  • David Joiner (Thu Feb 17 2011 - 14:12:44 CST)
• Compiling plugins without netcdf
  • Guido Polles (Wed Jun 01 2011 - 12:59:50 CDT)
  • Guido Polles (Wed Jun 01 2011 - 10:09:24 CDT)
  • John Stone (Wed Jun 01 2011 - 10:15:46 CDT)
• Compiling plugins without netcdf support returns an error.
  • Cosseddu, Salvatore (Fri May 13 2011 - 06:41:40 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 19:40:17 CDT)
  • Cosseddu, Salvatore (Thu May 12 2011 - 18:48:11 CDT)
  • John Stone (Thu May 12 2011 - 15:58:12 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
  • Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
  • Cosseddu, Salvatore (Thu May 12 2011 - 13:28:48 CDT)
• Compiling problem
  • John Stone (Mon Jun 19 2006 - 14:46:57 CDT)
  • angel (Mon Jun 19 2006 - 14:23:04 CDT)
  • John Stone (Wed Apr 26 2006 - 15:06:11 CDT)
  • angel (Wed Apr 26 2006 - 14:59:31 CDT)
  • John Stone (Fri Mar 31 2006 - 16:13:07 CST)
  • angel (Fri Mar 31 2006 - 15:57:47 CST)
• compiling problems
  • Justin Gullingsrud (Mon Nov 26 2001 - 13:24:55 CST)
  • B. Bennion (Mon Nov 26 2001 - 11:35:50 CST)
• compiling stopped without any obvious erros
  • Albert (Thu Jan 24 2013 - 10:40:55 CST)
  • Albert (Thu Jan 24 2013 - 01:16:17 CST)
  • John Stone (Wed Jan 23 2013 - 14:13:57 CST)
  • Albert (Wed Jan 23 2013 - 13:00:41 CST)
• Compiling VMD
  • John Stone (Thu Jul 29 2004 - 10:49:14 CDT)
  • Ryan Golhar (Wed Jul 28 2004 - 21:20:12 CDT)
• compiling VMD -- confused failure
  • Cook, Rich (Tue Aug 27 2013 - 14:49:26 CDT)
  • Cook, Rich (Tue Aug 27 2013 - 15:29:47 CDT)
  • John Stone (Tue Aug 27 2013 - 15:08:59 CDT)
  • Axel Kohlmeyer (Tue Aug 27 2013 - 14:20:24 CDT)
  • Cook, Rich (Tue Aug 27 2013 - 13:31:05 CDT)
  • John Stone (Tue Aug 27 2013 - 10:29:49 CDT)
  • Strahs, Dr. Daniel Bernard (Mon Aug 26 2013 - 22:03:56 CDT)
  • Cook, Rich (Mon Aug 26 2013 - 20:15:07 CDT)
• compiling VMD 1.8.3
  • John Stone (Mon May 02 2005 - 09:56:44 CDT)
  • Stefano Piana (Mon May 02 2005 - 05:17:34 CDT)
• Compiling vmd 1.9 plugins
  • John Stone (Wed Oct 26 2011 - 17:03:49 CDT)
  • Andrew Jewett (Wed Oct 26 2011 - 16:44:48 CDT)
  • Matt Fioravante (Wed Oct 26 2011 - 12:55:22 CDT)
• compiling VMD 1.9.2 source with tcl 8.6
  • Axel Kohlmeyer (Tue Apr 07 2015 - 05:57:58 CDT)
  • Vlad Cojocaru (Tue Apr 07 2015 - 05:40:33 CDT)
  • Vlad Cojocaru (Tue Apr 07 2015 - 05:23:35 CDT)
• Compiling VMD 1.9.3 64-bit on MacOS 10.13.6
  • Alex Sha (Mon Nov 26 2018 - 00:28:12 CST)
  • Alex Sha (Fri Nov 23 2018 - 00:48:06 CST)
• compiling VMD 1.9.3 under Ubuntu 22.04LTS: modern C library issues
  • Axel Kohlmeyer (Sat Jul 30 2022 - 16:04:14 CDT)
  • Strahs, Dr. Daniel Bernard (Sat Jul 30 2022 - 14:04:38 CDT)
• compiling VMD 1.9.3 with OSPRay support
  • Axel Kohlmeyer (Tue Jan 10 2017 - 08:54:18 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 08:51:33 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 07:25:10 CST)
  • John Stone (Tue Jan 10 2017 - 08:44:15 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 08:41:35 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 08:32:55 CST)
  • John Stone (Tue Jan 10 2017 - 07:59:38 CST)
• Compiling vmd for ppc linux
  • John Stone (Fri Feb 20 2004 - 16:23:33 CST)
  • apeyser_at_newssun.med.miami.edu (Fri Feb 20 2004 - 13:46:50 CST)
  • apeyser_at_newssun.med.miami.edu (Fri Feb 20 2004 - 13:55:41 CST)
• Compiling VMD for Windows 64bit
  • Nima Nouri (Sun Oct 05 2014 - 11:07:33 CDT)
  • Nima Nouri (Sun Oct 05 2014 - 07:56:08 CDT)
  • Nima Nouri (Sun Oct 05 2014 - 07:46:47 CDT)
  • John Stone (Fri Oct 03 2014 - 15:47:50 CDT)
  • Nima Nouri (Fri Oct 03 2014 - 15:08:15 CDT)
• compiling VMD from CVS 2016 09 21
  • Vlad Cojocaru (Tue Oct 04 2016 - 08:53:03 CDT)
  • Vlad Cojocaru (Tue Oct 04 2016 - 08:33:31 CDT)
  • John Stone (Thu Sep 22 2016 - 16:09:01 CDT)
  • Hannes Loeffler (Wed Sep 21 2016 - 12:05:37 CDT)
  • John Stone (Wed Sep 21 2016 - 11:15:56 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 10:17:28 CDT)
  • John Stone (Wed Sep 21 2016 - 09:53:14 CDT)
  • John Stone (Wed Sep 21 2016 - 09:56:02 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 09:14:48 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 08:26:17 CDT)
  • Axel Kohlmeyer (Wed Sep 21 2016 - 08:10:58 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 07:42:06 CDT)
• Compiling VMD from source
  • John Grime (Thu Oct 10 2013 - 16:29:04 CDT)
• Compiling VMD from source on SDSC Datastar (AIX 5.2)
  • Philip Blood (Fri Mar 02 2007 - 18:14:23 CST)
  • John Stone (Fri Mar 02 2007 - 17:15:22 CST)
  • Philip Blood (Fri Mar 02 2007 - 17:09:25 CST)
• compiling vmd from source--will that solve ied issue?
  • John Stone (Wed Dec 07 2005 - 10:01:13 CST)
  • Vlad Cojocaru (Wed Dec 07 2005 - 09:16:31 CST)
• Compiling VMD on IRIX 6.5 redux
  • steve_at_beefeater.darkorb.net (Wed Oct 15 2003 - 12:15:07 CDT)
  • John Stone (Tue Oct 14 2003 - 15:25:49 CDT)
  • steve_at_beefeater.darkorb.net (Thu Oct 09 2003 - 11:24:13 CDT)
• compiling VMD on mac
  • John Stone (Tue Apr 26 2005 - 17:13:36 CDT)
  • John Stone (Tue Apr 26 2005 - 14:25:13 CDT)
  • Hirsh Nanda (Tue Apr 26 2005 - 14:17:32 CDT)
  • John Stone (Wed Apr 20 2005 - 14:57:42 CDT)
  • Michel Espinoza-Fonseca (Wed Apr 20 2005 - 14:53:05 CDT)
  • William Sheffler (Wed Apr 20 2005 - 14:32:05 CDT)
• Compiling VMD plugins on Windows?
  • John Stone (Tue Jan 12 2010 - 10:51:39 CST)
  • Olaf Lenz (Fri Jan 08 2010 - 09:20:47 CST)
• Compiling VMD under Windows XP
  • Ben Chern (Thu Apr 03 2008 - 07:14:22 CDT)
  • John Stone (Thu Apr 03 2008 - 00:13:12 CDT)
  • Ben Chern (Tue Apr 01 2008 - 20:26:36 CDT)
  • Axel Kohlmeyer (Tue Apr 01 2008 - 06:06:22 CDT)
  • Ben Chern (Tue Apr 01 2008 - 01:33:34 CDT)
  • Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
  • Axel Kohlmeyer (Mon Mar 31 2008 - 21:47:02 CDT)
  • John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
  • Ben Chern (Mon Mar 31 2008 - 04:13:38 CDT)
• compiling VMD with cuda from source
  • John Stone (Sat May 23 2020 - 02:30:44 CDT)
  • Oleksii Zdorevskyi (Mon May 04 2020 - 09:11:25 CDT)
  • Josh Vermaas (Mon Apr 20 2020 - 10:16:47 CDT)
  • John Stone (Mon Apr 13 2020 - 09:55:28 CDT)
  • Oleksii Zdorevskyi (Mon Apr 13 2020 - 09:45:11 CDT)
  • Oleksii Zdorevskyi (Mon Apr 13 2020 - 04:28:00 CDT)
  • Josh Vermaas (Fri Apr 10 2020 - 11:21:31 CDT)
  • Oleksii Zdorevskyi (Fri Apr 10 2020 - 10:28:57 CDT)
• Compiling VMD with full OpenGL
  • John Stone (Thu Aug 10 2006 - 17:08:48 CDT)
  • Marc Baaden (Thu Aug 10 2006 - 16:35:36 CDT)
  • John Stone (Thu Aug 10 2006 - 11:09:35 CDT)
  • Marc Baaden (Thu Aug 10 2006 - 07:21:10 CDT)
• compiling vmd with g++-4.6 on ubuntu
  • Sandeep Gupta (Thu Sep 20 2012 - 23:07:40 CDT)
  • Axel Kohlmeyer (Thu Sep 20 2012 - 11:24:29 CDT)
  • Sandeep Gupta (Wed Sep 19 2012 - 12:37:04 CDT)
  • Caio Silva Souza (Wed Sep 19 2012 - 12:30:53 CDT)
  • John Stone (Wed Sep 19 2012 - 12:06:22 CDT)
  • Sandeep Gupta (Wed Sep 19 2012 - 11:45:46 CDT)
  • John Stone (Wed Sep 19 2012 - 11:08:34 CDT)
  • Sandeep Gupta (Wed Sep 19 2012 - 06:45:55 CDT)
• compiling VMD with gcc 4.7
  • Vlad Cojocaru (Thu Oct 04 2012 - 13:25:24 CDT)
  • lloyd riggs (Thu Oct 04 2012 - 10:49:33 CDT)
  • Axel Kohlmeyer (Thu Oct 04 2012 - 08:30:36 CDT)
  • Vlad Cojocaru (Thu Oct 04 2012 - 08:41:51 CDT)
  • Vlad Cojocaru (Wed Oct 03 2012 - 14:08:55 CDT)
  • John Stone (Wed Oct 03 2012 - 14:03:36 CDT)
  • Vlad Cojocaru (Wed Oct 03 2012 - 09:37:45 CDT)
• Compiling VMD with the TNG plugin
  • Dominic Hayward (Tue Jan 26 2021 - 12:11:11 CST)
  • John Stone (Tue Jan 26 2021 - 08:51:45 CST)
  • Dominic Hayward (Tue Jan 26 2021 - 04:08:29 CST)
  • Vermaas, Josh (Mon Jan 25 2021 - 13:02:19 CST)
  • Dominic Hayward (Mon Jan 25 2021 - 11:46:41 CST)
• Compiling VMD-1.8 as a loadable python module
  • Justin Gullingsrud (Thu Feb 06 2003 - 10:55:14 CST)
  • Lars Bruno Hansen (Thu Feb 06 2003 - 06:15:02 CST)
• compiling vmd...
  • B. Bennion (Tue Jan 28 2003 - 10:09:33 CST)
  • John Stone (Tue Jan 28 2003 - 09:39:36 CST)
  • Lubos Vrbka (Tue Jan 28 2003 - 04:54:00 CST)
• Compiling VMD: Trouble with DispCmds.C
  • Luis Rosales (Tue May 24 2005 - 17:36:32 CDT)
  • John Stone (Mon May 23 2005 - 10:04:27 CDT)
  • Luis Rosales (Fri May 20 2005 - 22:28:18 CDT)
• Compiling without graphics
  • Axel Kohlmeyer (Tue Jun 01 2010 - 21:55:58 CDT)
  • John Stone (Tue Jun 01 2010 - 22:06:55 CDT)
  • Philip Peartree (Tue Jun 01 2010 - 20:31:18 CDT)
• compiling/porting vmd
  • brad noyes (Fri May 23 2003 - 01:30:18 CDT)
  • John Stone (Thu May 22 2003 - 23:03:06 CDT)
  • brad noyes (Thu May 22 2003 - 22:23:25 CDT)
• complete residues within
  • Alberto Perez (Thu Mar 06 2008 - 04:38:02 CST)
  • Olaf Lenz (Thu Mar 06 2008 - 03:28:08 CST)
  • Leandro Martínez (Thu Mar 06 2008 - 03:06:48 CST)
  • jrui_at_ci.uc.pt (Thu Mar 06 2008 - 03:02:28 CST)
  • Leandro Martínez (Thu Mar 06 2008 - 02:20:59 CST)
• complex buried area
  • Josh Vermaas (Wed Apr 03 2013 - 12:58:51 CDT)
  • Felipe Merino (Wed Apr 03 2013 - 11:07:38 CDT)
• compose pdb
  • John Stone (Fri Feb 03 2006 - 12:42:49 CST)
  • Osmany Guirola Cruz (Fri Feb 03 2006 - 12:37:47 CST)
• Compressed files
  • John Stone (Thu Jul 11 2002 - 10:26:13 CDT)
  • Stéphane Teletchéa (Thu Jul 11 2002 - 03:17:41 CDT)
• compressed trajectory support
  • Mgr. Lubos Vrbka (Tue Apr 19 2005 - 01:04:57 CDT)
  • Axel Kohlmeyer (Mon Apr 18 2005 - 12:47:01 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 10:48:02 CDT)
  • Axel Kohlmeyer (Mon Apr 18 2005 - 10:38:14 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 10:08:41 CDT)
  • Bogdan Costescu (Mon Apr 18 2005 - 09:57:14 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 09:46:40 CDT)
  • Bogdan Costescu (Mon Apr 18 2005 - 09:20:00 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 07:13:10 CDT)
• Computational Biophysics Workshop using NAMD and VMD, November 18-22, 2013, Urbana, Illinois, USA
  • David Brandon (Fri Aug 23 2013 - 14:15:11 CDT)
• Computational Electrostatics for Biological Applications (CEBA'13) July 01-03, 2013 - Genova - Italy
  • Walter Rocchia (Wed Mar 27 2013 - 17:49:09 CDT)
• Compute angle between 2 principal axis
  • Revthi Sanker (Tue Jun 17 2014 - 00:57:58 CDT)
• Compute B-factor from MD run
  • Aaron Oakley (Fri Sep 12 2003 - 03:02:42 CDT)
• Compute force between two atoms
  • Axel Kohlmeyer (Tue Feb 26 2008 - 21:42:48 CST)
  • Chen Fei (Tue Feb 26 2008 - 20:28:22 CST)
• Compute the angle between a vector and the largest inertia axis
  • Axel Kohlmeyer (Tue Jan 30 2007 - 11:16:32 CST)
  • Prevost Martine (Tue Jan 30 2007 - 04:15:03 CST)
• Computer for 3D visualization
  • John Stone (Thu Sep 21 2006 - 05:51:23 CDT)
  • Berit Hinnemann (Wed Sep 20 2006 - 04:45:58 CDT)
• Computer hangs on trying to launch VMD CUDA
  • Axel Kohlmeyer (Tue Jul 05 2011 - 15:08:03 CDT)
  • John Stone (Tue Jul 05 2011 - 14:01:24 CDT)
  • Francesco Pietra (Mon Jul 04 2011 - 02:19:02 CDT)
• Computing angles
  • Axel Kohlmeyer (Fri Sep 07 2007 - 17:27:26 CDT)
  • jo hanna (Fri Sep 07 2007 - 17:18:33 CDT)
• Computing atom distances
  • Ashar Malik (Sun Nov 05 2017 - 00:25:41 CDT)
  • Vermaas, Joshua (Sat Nov 04 2017 - 20:30:45 CDT)
  • Windle,Stephen (Sat Nov 04 2017 - 17:05:40 CDT)
  • Chitrak Gupta (Fri Nov 03 2017 - 18:16:55 CDT)
  • Windle,Stephen (Fri Nov 03 2017 - 17:43:44 CDT)
  • Vermaas, Joshua (Fri Nov 03 2017 - 17:32:09 CDT)
  • Windle,Stephen (Fri Nov 03 2017 - 16:57:55 CDT)
  • Vermaas, Joshua (Fri Nov 03 2017 - 16:35:00 CDT)
  • Windle,Stephen (Fri Nov 03 2017 - 16:29:48 CDT)
  • Vermaas, Joshua (Tue Oct 31 2017 - 18:03:12 CDT)
  • Chitrak Gupta (Tue Oct 31 2017 - 17:27:38 CDT)
  • Windle,Stephen (Tue Oct 31 2017 - 15:52:54 CDT)
  • Ashar Malik (Tue Oct 31 2017 - 17:00:25 CDT)
• computing potential using pmepot
  • Abolfazl Bayat (Mon Jun 25 2012 - 11:16:49 CDT)
• Computing the transformation_matrix for best fit alignment of structures
  • LW (Thu Apr 18 2013 - 02:22:48 CDT)
  • John Stone (Thu Apr 18 2013 - 01:22:21 CDT)
  • LW (Wed Apr 17 2013 - 22:54:18 CDT)
• concantenating psf files
  • lloyd riggs (Sun Sep 30 2012 - 13:08:40 CDT)
• Concatenate DCD Files with Different Numbers of Atoms
  • Efthymiou, Christos (Wed Jul 05 2023 - 02:53:00 CDT)
  • Strahs, Dr. Daniel Bernard (Sat Jul 01 2023 - 21:40:55 CDT)
  • Nick Bayhi (Sat Jul 01 2023 - 17:32:29 CDT)
  • Efthymiou, Christos (Sat Jul 01 2023 - 16:04:35 CDT)
• Concatenate Outputs
  • McGuire, Kelly (Sat Nov 10 2018 - 14:52:45 CST)
  • McGuire, Kelly (Fri Nov 09 2018 - 14:12:21 CST)
• concatenate protein and 2 ligand files
  • John Stone (Mon Feb 09 2009 - 15:17:44 CST)
  • Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
• Concatenate translated pdb's in to one pdb file- Writepdb is giving error
  • Mohan maruthi sena (Mon Apr 08 2013 - 06:27:15 CDT)
• concatenate two pdb files?
  • Subbarao Kanchi (Wed Mar 30 2016 - 23:51:00 CDT)
  • Akshay Bhatnagar (Wed Mar 30 2016 - 23:08:34 CDT)
• Concerning protein rotation
  • John Stone (Mon Sep 08 2008 - 11:25:47 CDT)
  • Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
• CONECT in pdb files
  • John Stone (Mon Jul 05 2004 - 14:16:13 CDT)
  • Brian Bennion (Fri Jul 02 2004 - 18:01:58 CDT)
  • Travis DePuy (Fri Jul 02 2004 - 14:45:10 CDT)
• CONECT Records in .pdb file - bonds not getting plotted
  • John Stone (Wed Sep 03 2008 - 14:01:23 CDT)
  • Paul T. Bauman (Wed Sep 03 2008 - 11:53:37 CDT)
  • Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
• conect2psf
  • Andrew Dalke (Wed Jul 24 2002 - 04:51:04 CDT)
  • Eugen Leitl (Wed Jul 24 2002 - 04:14:53 CDT)
  • Andrew Dalke (Tue Jul 23 2002 - 23:35:06 CDT)
• Confidential
  • Ibrahim Dunga (Fri May 14 2004 - 07:37:05 CDT)
• Configuration file
  • John Stone (Tue Mar 06 2007 - 10:02:47 CST)
  • Rita Cassia (Tue Mar 06 2007 - 06:37:47 CST)
  • Ioana Cozmuta (Tue Apr 29 2003 - 19:41:47 CDT)
• configure do nothing (Linux)
  • Juan Alfredo Freites (Wed Mar 31 2004 - 12:04:28 CST)
  • Mike McCallum (Wed Mar 31 2004 - 10:44:25 CST)
  • Arturas (Wed Mar 31 2004 - 09:22:54 CST)
• configure do nothing in Linux (???) - thank you !
  • Arturas (Thu Apr 01 2004 - 03:23:39 CST)
• configure do nothing in Linux(???)
  • Jérôme Hénin (Wed Mar 31 2004 - 11:20:51 CST)
  • John Stone (Wed Mar 31 2004 - 10:20:28 CST)
  • Arturas (Wed Mar 31 2004 - 09:27:36 CST)
• Configure VMD while GROMACS Installation
  • Axel Kohlmeyer (Tue Feb 07 2012 - 05:52:22 CST)
  • Hitesh Patel (Tue Feb 07 2012 - 03:39:30 CST)
• Configuring Tkcon in VMD for Catalina to access history with up arrow
  • John Stone (Fri Jul 24 2020 - 14:40:45 CDT)
  • Chang, Christopher (Fri Jul 24 2020 - 14:31:02 CDT)
  • John Stone (Fri Jul 24 2020 - 13:36:24 CDT)
  • Chang, Christopher (Thu Jul 23 2020 - 17:16:32 CDT)
• configuring vmd w/ browser on OS X
  • John Stone (Mon Aug 11 2003 - 11:22:14 CDT)
  • Charles McCallum (Fri Aug 08 2003 - 21:49:16 CDT)
• conflict between VMD and Cygwin
  • John Stone (Mon Feb 14 2011 - 18:19:52 CST)
  • Li, Liwei (Mon Feb 14 2011 - 18:02:00 CST)
• conflict between VMD and Netbeans IDE on MacOSX
  • John Stone (Tue Jan 12 2010 - 14:13:30 CST)
  • Leonardo Trabuco (Thu Jan 07 2010 - 08:02:37 CST)
  • Wayne Dawson (Thu Jan 07 2010 - 06:44:52 CST)
  • Robert Brunner (Wed Jan 06 2010 - 11:18:11 CST)
  • Wayne Dawson (Tue Jan 05 2010 - 21:16:58 CST)
• Conformation assignment
  • Navid Shervani-Tabar (Wed Sep 16 2020 - 14:01:30 CDT)
• conformational alignment
  • Wen Li (Thu Mar 31 2005 - 12:55:27 CST)
  • John Stone (Thu Mar 31 2005 - 12:50:53 CST)
  • Wen Li (Thu Mar 31 2005 - 12:49:47 CST)
  • John Stone (Thu Mar 31 2005 - 12:40:51 CST)
  • Wen Li (Thu Mar 31 2005 - 12:26:20 CST)
  • Wen Li (Thu Mar 31 2005 - 10:53:10 CST)
  • John Stone (Thu Mar 31 2005 - 10:40:42 CST)
  • Wen Li (Thu Mar 31 2005 - 10:32:51 CST)
  • John Stone (Thu Mar 31 2005 - 10:29:54 CST)
  • Wen Li (Thu Mar 31 2005 - 10:24:18 CST)
  • John Stone (Wed Mar 30 2005 - 15:30:26 CST)
  • Wen Li (Wed Mar 30 2005 - 15:21:26 CST)
• conformations of a linker
  • Boris Steipe (Fri Oct 31 2008 - 16:39:17 CDT)
  • Peter Freddolino (Fri Oct 31 2008 - 14:37:34 CDT)
  • Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
• confusing about the residue number
  • Ashma Khan (Thu Dec 10 2020 - 10:07:56 CST)
  • vermaasj (Thu Dec 10 2020 - 09:47:00 CST)
  • Ashma Khan (Wed Dec 09 2020 - 23:24:36 CST)
  • Roshan Shrestha (Wed Dec 09 2020 - 23:18:50 CST)
  • Ashma Khan (Wed Dec 09 2020 - 22:43:18 CST)
• connect a spring between all the atoms present in pdb structure
  • Axel Kohlmeyer (Sat Aug 04 2012 - 13:20:05 CDT)
  • SONY kaur (Sat Aug 04 2012 - 04:31:42 CDT)
• Connect particular residues with a line
  • Ashar Malik (Sat Sep 01 2018 - 22:39:17 CDT)
  • Raag Saluja (Sat Sep 01 2018 - 12:39:02 CDT)
• Connecting a phantom with NAMD and VMD
  • John Stone (Tue Nov 07 2006 - 16:40:45 CST)
  • preeda (Mon Nov 06 2006 - 00:39:36 CST)
• Connecting new residues to old residues in topology file
  • Peter Freddolino (Wed Jun 20 2018 - 21:10:23 CDT)
  • Nick Palmer (Wed Jun 20 2018 - 13:28:08 CDT)
• Connecting VMD to a supercomputer center
  • SM Bargeen A Turzo (Thu Mar 29 2018 - 14:04:59 CDT)
• connectivity in RBCG file(pdb extension)
  • ANURAG JHA (Tue Sep 27 2011 - 18:46:20 CDT)
• Connectivity lost when loading second pdb
  • MW Van der Kamp, School of Chemistry (Tue Oct 03 2006 - 11:31:59 CDT)
  • Axel Kohlmeyer (Tue Oct 03 2006 - 08:07:39 CDT)
  • MW Van der Kamp, School of Chemistry (Tue Oct 03 2006 - 04:29:20 CDT)
  • John Stone (Tue Oct 03 2006 - 00:38:41 CDT)
  • MW Van der Kamp, School of Chemistry (Mon Oct 02 2006 - 11:06:33 CDT)
• connectivity problem
  • Axel Kohlmeyer (Wed Jan 09 2008 - 10:09:35 CST)
  • rams rams (Wed Jan 09 2008 - 08:57:48 CST)
• Consider fluctuating volume for density
  • Axel Kohlmeyer (Thu May 10 2007 - 09:45:04 CDT)
  • Philipp Schoen1 (Thu May 10 2007 - 05:16:57 CDT)
• Considering special bonds not all of bonds,
  • Ali Alizadeh (Wed Aug 07 2013 - 16:07:29 CDT)
  • Josh Vermaas (Wed Aug 07 2013 - 15:15:45 CDT)
  • Josh Vermaas (Wed Aug 07 2013 - 14:28:46 CDT)
  • Ali Alizadeh (Wed Aug 07 2013 - 15:03:10 CDT)
  • Axel Kohlmeyer (Wed Aug 07 2013 - 13:44:04 CDT)
  • Ali Alizadeh (Wed Aug 07 2013 - 12:42:56 CDT)
  • Axel Kohlmeyer (Wed Aug 07 2013 - 09:10:43 CDT)
  • Ali Alizadeh (Wed Aug 07 2013 - 08:03:40 CDT)
• Consistent size
  • Josh Vermaas (Thu Oct 15 2015 - 11:33:43 CDT)
  • Maxim Belkin (Thu Oct 15 2015 - 09:44:09 CDT)
  • Eric Smoll (Wed Oct 14 2015 - 21:33:58 CDT)
• console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages
  • Pattanayek, Sabuj (Tue Jun 07 2005 - 11:57:52 CDT)
  • Alex Vakhrouchev (Tue Jun 07 2005 - 00:09:22 CDT)
  • Sabuj Pattanayek (Thu Apr 21 2005 - 17:46:59 CDT)
  • John Stone (Thu Apr 21 2005 - 17:37:39 CDT)
  • Sabuj Pattanayek (Thu Apr 21 2005 - 17:32:55 CDT)
  • John Stone (Thu Apr 21 2005 - 17:22:44 CDT)
  • Sabuj Pattanayek (Thu Apr 21 2005 - 17:19:57 CDT)
• Constant pH MD with NAMD
  • Hoang, Oanh Tu (Wed Jul 19 2023 - 08:15:22 CDT)
• constant region selection for animation
  • John Stone (Thu Jun 25 2009 - 10:03:21 CDT)
  • Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
• constant velocity for carbon nanotubes
  • Axel Kohlmeyer (Thu Jul 19 2012 - 02:15:07 CDT)
  • bond.james (Wed Jul 18 2012 - 21:38:48 CDT)
• Constraining two sets of atoms
  • Josh Vermaas (Mon Sep 15 2014 - 19:41:49 CDT)
  • Natnael Doilicho (Mon Sep 15 2014 - 18:21:45 CDT)
• constraints
  • Swarna Patra (Thu Jan 20 2005 - 20:49:49 CST)
• constructing a .tpr
  • Axel Kohlmeyer (Tue Dec 24 2013 - 12:04:09 CST)
  • Rasoul Nasiri (Tue Dec 24 2013 - 11:42:25 CST)
  • Axel Kohlmeyer (Tue Dec 24 2013 - 05:49:49 CST)
  • Axel Kohlmeyer (Tue Dec 24 2013 - 04:29:10 CST)
  • Rasoul Nasiri (Tue Dec 24 2013 - 02:30:03 CST)
• constructing spherical molecule?
  • Josh Vermaas (Tue Apr 05 2016 - 11:05:11 CDT)
  • Olya Kravchenko (Tue Apr 05 2016 - 10:23:46 CDT)
  • Olya Kravchenko (Mon Apr 04 2016 - 15:16:12 CDT)
  • Josh Vermaas (Mon Apr 04 2016 - 17:06:46 CDT)
• consultation about metal_enviroment.tcl
  • Dong Luo (Wed Dec 22 2010 - 09:45:19 CST)
  • ÅÓ´ºÀö (Wed Dec 22 2010 - 03:30:20 CST)
• contact between 2 residues
  • John Stone (Tue May 30 2006 - 14:27:24 CDT)
  • L. Michel Espinoza-Fonseca (Tue May 30 2006 - 14:03:06 CDT)
• contact map
  • Axel Kohlmeyer (Mon Jul 05 2010 - 11:47:31 CDT)
  • leila karami (Mon Jul 05 2010 - 09:46:04 CDT)
  • leila karami (Mon Jul 05 2010 - 09:12:47 CDT)
  • leila karami (Mon Jul 05 2010 - 08:33:23 CDT)
  • Luis Gracia (Wed Jun 01 2005 - 18:13:39 CDT)
  • Anuradha Mittal (Wed Jun 01 2005 - 14:56:06 CDT)
• contact map (over all frames)
  • Peter Freddolino (Fri Apr 13 2007 - 21:25:24 CDT)
  • amit dong (Fri Apr 13 2007 - 15:53:24 CDT)
• contact map definition
  • dimka (Mon Mar 13 2006 - 12:03:18 CST)
  • Vlad Cojocaru (Mon Mar 13 2006 - 11:53:22 CST)
  • John Stone (Mon Mar 13 2006 - 11:34:02 CST)
  • Jindal Shah (Mon Mar 13 2006 - 11:21:20 CST)
• contact map for Protein-DNA interaction
  • Barry Isralewitz (Mon Jul 12 2010 - 13:50:25 CDT)
  • atila petrosian (Mon Jul 12 2010 - 02:19:13 CDT)
  • leila karami (Wed Jul 07 2010 - 03:32:51 CDT)
• contact map in Rainbow scale
  • Vermaas, Joshua (Fri Jan 12 2018 - 13:10:25 CST)
  • Roshan Shrestha (Fri Jan 12 2018 - 11:55:56 CST)
• contact map lig-pro
  • John Stone (Wed Apr 19 2006 - 17:46:14 CDT)
  • andrea spitaleri (Wed Apr 19 2006 - 05:37:23 CDT)
• Contact map using VMD Contact Map Plugin
  • Roshan Shrestha (Tue Dec 19 2017 - 20:49:22 CST)
• contactmap for RNA
  • Samuel Coulbourn Flores 花山 (Wed Jan 28 2009 - 16:44:43 CST)
• Contacts among two sets of atoms
  • Vermaas, Joshua (Tue Jan 03 2017 - 10:54:03 CST)
  • saeed amini (Mon Jan 02 2017 - 10:19:08 CST)
• contacts and pbc
  • Jesper Sørensen (Wed Jul 06 2011 - 03:30:37 CDT)
  • John Stone (Tue Jul 05 2011 - 13:59:28 CDT)
  • Jesper Sørensen (Sun Jul 03 2011 - 11:30:43 CDT)
  • Axel Kohlmeyer (Sun Jul 03 2011 - 11:21:39 CDT)
  • Jesper Sørensen (Sun Jul 03 2011 - 08:39:02 CDT)
• contactvFreq TCL script not running
  • Mi Yang (Wed Oct 20 2021 - 00:57:01 CDT)
• contour plots
  • Alexandre A. Vakhrouchev (Mon Jul 21 2008 - 02:25:51 CDT)
  • Subramanian Vaitheeswaran (Thu Jul 10 2008 - 10:02:58 CDT)
  • Giovanni Bellesia (Thu Jul 10 2008 - 01:09:36 CDT)
  • Peter Freddolino (Thu Jul 10 2008 - 00:27:41 CDT)
  • Aaron.Oakley_at_csiro.au (Wed Jul 09 2008 - 22:50:54 CDT)
• Contour plots for XYZ format
  • Axel Kohlmeyer (Sat Oct 30 2010 - 19:17:46 CDT)
  • Wang Xianqiao (Sat Oct 30 2010 - 19:02:25 CDT)
  • Axel Kohlmeyer (Sat Oct 30 2010 - 10:56:04 CDT)
  • Wang Xianqiao (Fri Oct 29 2010 - 23:47:51 CDT)
• Contribution of selected atoms to surface
  • Peter Freddolino (Fri May 04 2007 - 10:13:41 CDT)
  • Brian Smith (Fri May 04 2007 - 03:12:57 CDT)
• control drawing method
  • Axel Kohlmeyer (Mon Feb 25 2008 - 14:51:57 CST)
  • Myunggi Yi (Mon Feb 25 2008 - 13:26:33 CST)
• Control of aminoacid ionization in VMD
  • Luis Agullo (LAB) (Thu Nov 05 2009 - 02:24:26 CST)
  • L. Michel Espinoza-Fonseca (Tue Nov 03 2009 - 05:24:46 CST)
  • Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
• control the spacing between the dashes in the hydrogen bonding between two atoms
  • Axel Kohlmeyer (Tue Oct 30 2012 - 08:59:22 CDT)
  • mahesh gudem (Tue Oct 30 2012 - 07:48:21 CDT)
• Convergence of the Gram-Charlier expansion
  • John Stone (Wed Oct 10 2012 - 15:05:48 CDT)
  • Ali Khanlarkhani (Wed Sep 26 2012 - 15:24:20 CDT)
  • Ali Khanlarkhani (Wed Sep 26 2012 - 15:25:54 CDT)
  • Ali Khanlarkhani (Wed Sep 26 2012 - 10:36:37 CDT)
• conversion from CHARMM27 psf to charmm36 with psfgen?
  • Edward Lyman (Mon Feb 25 2013 - 08:37:12 CST)
• Conversion from gromacs trr trajectory into charmm trajectory
  • Vermaas, Joshua (Tue Jan 29 2019 - 11:25:50 CST)
  • Roshan Shrestha (Mon Jan 28 2019 - 23:14:21 CST)
• Conversion into POVRay coordinates
  • John Stone (Fri Aug 06 2010 - 09:23:02 CDT)
  • Nicolas Sapay (Fri Aug 06 2010 - 08:41:47 CDT)
  • John Stone (Thu Aug 05 2010 - 17:06:54 CDT)
  • Nicolas Sapay (Wed Aug 04 2010 - 04:01:20 CDT)
• Conversion of DCD trajectories to AMBER ones ?
  • Marek Maly (Mon Jul 05 2010 - 09:07:14 CDT)
  • Axel Kohlmeyer (Mon Jul 05 2010 - 05:54:16 CDT)
  • Marek Maly (Mon Jul 05 2010 - 05:06:40 CDT)
• Conversion of GAMESS Quantum MD trajectory file
  • radak004_at_umn.edu (Mon Apr 26 2010 - 16:38:36 CDT)
  • Axel Kohlmeyer (Mon Apr 26 2010 - 15:01:16 CDT)
  • Diego Javier Alonso de Armiño (Mon Apr 26 2010 - 13:59:49 CDT)
• conversion of gromacs trajectory file (xtc) to amber trajectory file (mdcrd)
  • Axel Kohlmeyer (Sat Dec 25 2010 - 11:20:06 CST)
  • leila karami (Sat Dec 25 2010 - 09:14:57 CST)
• conversion of topology entries from charmm str format to vmd psfgen format
  • Monika Madhavi (Tue Sep 15 2015 - 05:40:06 CDT)
• Conversion of trajectory files
  • Kooser, Ara S (Wed Nov 10 2004 - 10:11:32 CST)
  • Ernesto E. Di Iorio (Wed Nov 10 2004 - 04:23:19 CST)
  • Adrain Koh (Tue Nov 09 2004 - 21:43:52 CST)
• conversion of vmd generated (C36) bilayer to gromac format
  • Miro Astore (Sun Jan 19 2020 - 16:35:54 CST)
  • Yogesh Sharma (Sun Jan 19 2020 - 01:04:27 CST)
• convert .coor to pdb
  • Joshua D. Moore (Mon Sep 26 2011 - 09:12:09 CDT)
  • Zumot, Elia Nabil (Mon Sep 26 2011 - 08:08:59 CDT)
  • Axel Kohlmeyer (Mon Sep 26 2011 - 07:04:11 CDT)
  • matziast_at_med.uth.gr (Mon Sep 26 2011 - 06:08:24 CDT)
• convert .mrc map to .dx format
  • Karol KASZUBA (Sat Mar 04 2017 - 05:49:53 CST)
  • Steven Cohen (Fri Mar 03 2017 - 10:49:47 CST)
  • Ryan McGreevy (Fri Mar 03 2017 - 10:08:58 CST)
  • Karol KASZUBA (Fri Mar 03 2017 - 09:51:29 CST)
• convert AMBER format file to CHARMM format file or NAMD format file
  • Axel Kohlmeyer (Thu Apr 17 2014 - 11:03:49 CDT)
  • Josh Vermaas (Thu Apr 17 2014 - 10:27:43 CDT)
  • Norge Cruz Hernández (Thu Apr 17 2014 - 10:08:29 CDT)
  • Axel Kohlmeyer (Wed Apr 16 2014 - 14:55:58 CDT)
  • Josh Vermaas (Wed Apr 16 2014 - 14:29:44 CDT)
  • Norge Cruz Hernández (Wed Apr 16 2014 - 13:24:26 CDT)
• Convert an ascii matrix to an image
  • Jérôme Hénin (Mon Mar 13 2006 - 15:22:11 CST)
  • Nuno R. L. Ferreira (Mon Mar 13 2006 - 11:47:04 CST)
  • Axel Kohlmeyer (Sat Mar 11 2006 - 16:25:18 CST)
  • John Stone (Mon Mar 13 2006 - 10:18:17 CST)
  • Jérôme Hénin (Mon Mar 13 2006 - 07:33:11 CST)
  • Nicolas Sapay (Mon Mar 13 2006 - 04:34:22 CST)
  • Nuno R. L. Ferreira (Sat Mar 11 2006 - 13:05:10 CST)
• Convert CHARMM psf to X-PLOR
  • Monika Madhavi (Sun Aug 12 2012 - 19:51:20 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 14:48:01 CDT)
  • Monika Madhavi (Fri Aug 10 2012 - 11:50:01 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 10:43:03 CDT)
  • Monika Madhavi (Fri Aug 10 2012 - 10:19:15 CDT)
  • John Stone (Fri Aug 10 2012 - 09:29:08 CDT)
  • Monika Madhavi (Fri Aug 10 2012 - 01:04:08 CDT)
• convert dcd file to xyz
  • Josh Vermaas (Wed Oct 02 2013 - 13:24:13 CDT)
  • Axel Kohlmeyer (Wed Oct 02 2013 - 13:13:18 CDT)
  • John Stone (Wed Oct 02 2013 - 12:48:06 CDT)
  • Huong Vu (Wed Oct 02 2013 - 12:21:04 CDT)
• convert DCD files to GROMACS .XTC format
  • John Stone (Tue Aug 31 2004 - 15:11:09 CDT)
  • Vani Krishna (Sat Aug 28 2004 - 17:43:11 CDT)
• convert dcd to coordinate, each frame, conserving the identity
  • fabrizio.benedetti_at_unil.ch (Fri Aug 10 2012 - 02:23:30 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 03:13:23 CDT)
• convert frames to nano seconds
  • Chitrak Gupta (Thu Aug 17 2017 - 17:13:45 CDT)
  • Ashar Malik (Thu Aug 17 2017 - 09:27:56 CDT)
  • Chitrak Gupta (Thu Aug 17 2017 - 09:15:11 CDT)
  • Chitrak Gupta (Thu Aug 17 2017 - 09:32:19 CDT)
  • Ashar Malik (Thu Aug 17 2017 - 07:58:49 CDT)
  • Saikat Pal (Wed Aug 16 2017 - 08:31:58 CDT)
  • Ashar Malik (Wed Aug 16 2017 - 09:53:19 CDT)
• convert pdb file from angstorm to nm units
  • John Stone (Thu May 09 2013 - 10:35:21 CDT)
  • Nandigana, Vishal Venkata Raghave (Wed May 08 2013 - 12:06:29 CDT)
  • Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 22:47:24 CDT)
  • Josh Vermaas (Tue May 07 2013 - 17:26:52 CDT)
  • Josh Vermaas (Tue May 07 2013 - 15:09:09 CDT)
  • John Stone (Tue May 07 2013 - 14:38:47 CDT)
  • Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 13:55:18 CDT)
• convert PDB file to CRD?
  • John Stone (Mon Nov 14 2005 - 11:47:48 CST)
  • Wei Chen (Mon Nov 14 2005 - 11:13:18 CST)
  • Zhen Qin (Fri Nov 11 2005 - 17:49:21 CST)
• convert pdb format to normal pdb format
  • Bjoern Olausson (Wed Aug 24 2011 - 06:10:45 CDT)
  • hamze rahimi (Wed Aug 24 2011 - 04:48:09 CDT)
• convert pdb to psf
  • Jim Phillips (Tue Sep 30 2003 - 12:48:26 CDT)
  • FOK LO MING (Tue Sep 30 2003 - 03:54:34 CDT)
• convert prmtop to psf
  • Axel Kohlmeyer (Tue May 17 2011 - 05:56:15 CDT)
  • Jorgen Simonsen (Tue May 17 2011 - 04:17:33 CDT)
  • Axel Kohlmeyer (Wed Feb 02 2011 - 15:45:16 CST)
  • Axel Kohlmeyer (Wed Feb 02 2011 - 09:26:32 CST)
  • Wei Huang (Tue Feb 01 2011 - 22:04:07 CST)
  • Axel Kohlmeyer (Tue Feb 01 2011 - 17:41:31 CST)
  • Wei Huang (Tue Feb 01 2011 - 16:22:28 CST)
  • Axel Kohlmeyer (Tue Jun 22 2010 - 14:01:36 CDT)
  • John Stone (Tue Jun 22 2010 - 13:58:14 CDT)
  • Lai zaizhi (Tue Jun 22 2010 - 11:54:56 CDT)
  • Lai zaizhi (Tue Jun 22 2010 - 12:22:16 CDT)
  • John Stone (Tue Jun 22 2010 - 11:27:49 CDT)
  • George Madalin Giambasu (Mon Jun 21 2010 - 18:09:28 CDT)
  • Lai zaizhi (Mon Jun 21 2010 - 17:33:07 CDT)
  • Axel Kohlmeyer (Mon Jun 21 2010 - 17:25:22 CDT)
  • John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
  • Lai zaizhi (Mon Jun 21 2010 - 16:41:37 CDT)
• Convert problem
  • Mike McCallum (Wed Apr 29 2020 - 22:47:43 CDT)
  • mohamed marzouk (Sat Apr 25 2020 - 11:44:09 CDT)
  • mohamed marzouk (Sat Apr 25 2020 - 11:38:23 CDT)
  • Pawel Kedzierski (Sat Apr 25 2020 - 10:45:18 CDT)
  • Giacomo Fiorin (Sat Apr 25 2020 - 09:45:29 CDT)
  • mohamed marzouk (Sat Apr 25 2020 - 03:31:23 CDT)
• convert psf to top with topotools
  • Vermaas, Joshua (Wed Jun 21 2017 - 18:02:59 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 18:21:22 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 16:58:52 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 17:45:11 CDT)
  • Radak, Brian K (Wed Jun 21 2017 - 17:03:23 CDT)
  • Vermaas, Joshua (Wed Jun 21 2017 - 13:30:42 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 13:35:12 CDT)
  • Axel Kohlmeyer (Wed Jun 21 2017 - 13:04:40 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 12:20:43 CDT)
• Convert RNA to DNA
  • Iman Jeddi (Sat Dec 14 2013 - 11:54:12 CST)
• convert tcl to python
  • Peter Freddolino (Thu Mar 01 2007 - 09:28:55 CST)
  • Per Jr. Greisen (Thu Mar 01 2007 - 05:54:18 CST)
• convert THR and SER to the phosphorylated forms
  • L. Michel Espinoza-Fonseca (Wed Oct 22 2008 - 04:01:01 CDT)
  • bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
• Convert trajectory
  • Diego Gomes (Wed May 31 2023 - 09:49:07 CDT)
  • Joel Subach (Thu May 25 2023 - 02:26:17 CDT)
  • GAGANJYOT KAUR BAKSHI (Thu May 25 2023 - 01:40:01 CDT)
  • Joel Subach (Thu May 25 2023 - 01:38:07 CDT)
  • GAGANJYOT KAUR BAKSHI (Wed May 24 2023 - 21:08:06 CDT)
• convert unformatted delphi phi to formatted
  • Jun Cheng (Wed Feb 10 2010 - 10:09:55 CST)
• convertind dcd to xyz file
  • Thomas Bishop (Mon Dec 05 2011 - 08:54:11 CST)
  • Axel Kohlmeyer (Tue Nov 29 2011 - 17:43:05 CST)
  • siladitya mukherjee (Tue Nov 29 2011 - 16:39:22 CST)
• converting
  • John Stone (Wed Dec 04 2002 - 16:16:22 CST)
  • Vlad Cojocaru (Wed Dec 04 2002 - 16:04:06 CST)
• converting .dx volumetric data to 2D isocontour
  • John Stone (Tue Aug 02 2011 - 16:53:16 CDT)
  • Raul Araya (Thu Jul 28 2011 - 12:31:37 CDT)
• Converting .txt trajectory files to VMD compatible format
  • John Stone (Wed Nov 17 2004 - 11:20:27 CST)
  • Adrain Koh (Tue Nov 09 2004 - 21:40:18 CST)
  • John Stone (Fri Nov 05 2004 - 11:25:08 CST)
  • Adrain Koh (Fri Nov 05 2004 - 04:43:40 CST)
• converting a .cif file into a vmd readable format, how?
  • Ryan McGreevy (Thu Oct 23 2014 - 12:45:44 CDT)
  • Jonathan Gough (Thu Oct 23 2014 - 12:52:51 CDT)
  • Ryan McGreevy (Thu Oct 23 2014 - 13:01:11 CDT)
  • Jonathan Gough (Thu Oct 23 2014 - 11:58:07 CDT)
• converting coarse grained POPC membranes to atomistic representation (AMBER, GAFF)
  • Vlad Cojocaru (Thu Aug 18 2011 - 07:06:32 CDT)
• converting Desmond trajectory and energy file to gromacs
  • Axel Kohlmeyer (Tue Jul 24 2012 - 06:22:00 CDT)
  • Nidhi Jatana (Tue Jul 24 2012 - 04:53:48 CDT)
• Converting electron density data from .map to .dx in vmd
  • Faisal, H M Nasrullah (Wed Oct 07 2020 - 09:48:20 CDT)
  • John Stone (Tue Oct 06 2020 - 23:52:59 CDT)
  • Faisal, H M Nasrullah (Tue Oct 06 2020 - 22:07:28 CDT)
  • John Stone (Tue Oct 06 2020 - 20:57:44 CDT)
  • JC Gumbart (Wed Sep 30 2020 - 13:35:30 CDT)
  • Faisal, H M Nasrullah (Wed Sep 30 2020 - 11:16:29 CDT)
  • Faisal, H M Nasrullah (Tue Sep 29 2020 - 08:54:29 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:36:57 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:33:26 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:56:46 CDT)
• Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:31:59 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:58:18 CDT)
• Converting Files with VMD
  • John Stone (Tue Jan 23 2007 - 17:47:54 CST)
  • mr.ibid_at_gmail.com (Sat Jan 20 2007 - 04:33:56 CST)
• Converting graphics to a pdb's coord system
  • Charles Moad (Thu Apr 14 2005 - 20:08:24 CDT)
  • John Stone (Thu Apr 14 2005 - 16:23:19 CDT)
  • Charles Moad (Wed Apr 13 2005 - 18:40:54 CDT)
  • John Stone (Wed Apr 13 2005 - 17:29:33 CDT)
  • Charles Moad (Tue Apr 12 2005 - 08:52:12 CDT)
  • Charles Moad (Sun Apr 10 2005 - 19:13:31 CDT)
• converting NAMD trajectories
  • GAGANJYOT KAUR BAKSHI (Tue Jul 25 2023 - 01:46:59 CDT)
• Converting namd trajectory to desmond trajectory
  • Hasdemir, Hale Siir (Wed Jun 14 2023 - 17:05:39 CDT)
  • GAGANJYOT KAUR BAKSHI (Wed Jun 14 2023 - 14:40:04 CDT)
  • Diego Gomes (Wed Jun 14 2023 - 14:33:50 CDT)
  • Hasdemir, Hale Siir (Tue Jun 13 2023 - 17:00:25 CDT)
  • GAGANJYOT KAUR BAKSHI (Tue Jun 13 2023 - 14:56:58 CDT)
• converting old LAMMPS ASCII dumps
  • Dan Lussier (Tue Aug 24 2010 - 12:59:40 CDT)
  • Axel Kohlmeyer (Tue Aug 24 2010 - 09:48:26 CDT)
  • Dan Lussier (Tue Aug 24 2010 - 09:38:11 CDT)
  • Axel Kohlmeyer (Mon Aug 23 2010 - 20:04:32 CDT)
  • Dan Lussier (Mon Aug 23 2010 - 19:08:01 CDT)
• converting pdb to xtc
  • L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 14:20:04 CST)
  • John Stone (Mon Feb 27 2006 - 11:13:22 CST)
  • Nuno R. L. Ferreira (Mon Feb 27 2006 - 10:50:16 CST)
  • L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 10:17:42 CST)
• Converting tracker coordinates to molecule coordinate for selection
  • Dipesh Bhattarai (Fri Feb 12 2010 - 11:57:03 CST)
  • John Stone (Fri Feb 12 2010 - 11:32:37 CST)
  • Dipesh Bhattarai (Fri Feb 12 2010 - 09:24:58 CST)
  • John Stone (Fri Feb 12 2010 - 00:26:09 CST)
  • Dipesh Bhattarai (Mon Feb 08 2010 - 10:57:03 CST)
• converting trajectory files with catdcd in command line
  • Axel Kohlmeyer (Fri Feb 20 2009 - 08:02:38 CST)
  • Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
• convex hull and VMD
  • John Stone (Mon Sep 28 1998 - 17:05:51 CDT)
  • Andrew Dalke (Mon Sep 28 1998 - 17:31:10 CDT)
• coordinate translation
  • John Stone (Tue Jun 27 2006 - 16:57:41 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Tue Jun 27 2006 - 11:04:28 CDT)
• COORDINATES extraction of molecule's centers of mass
  • John Stone (Wed Mar 28 2012 - 11:40:54 CDT)
  • VladanStefanovic_at_kg.ac.rs (Tue Mar 27 2012 - 01:37:23 CDT)
• coordinates of an atom
  • John Stone (Tue May 02 2006 - 11:22:37 CDT)
  • Axel Kohlmeyer (Tue May 02 2006 - 11:22:22 CDT)
  • John Stone (Tue May 02 2006 - 10:13:23 CDT)
  • Enzo Vitale (Tue May 02 2006 - 09:39:10 CDT)
• coordinates with get command
  • John Stone (Sat Aug 25 2007 - 23:04:51 CDT)
  • Nuno Loureiro Ferreira (Sat Aug 25 2007 - 23:27:28 CDT)
  • Nuno Loureiro Ferreira (Sat Aug 25 2007 - 18:10:02 CDT)
• coordinates: visual and in-file
  • Josh Vermaas (Wed Feb 19 2014 - 00:18:03 CST)
  • Chetan Mahajan (Tue Feb 18 2014 - 19:18:14 CST)
• CoordinateTransformation
  • Jim Phillips (Sun Sep 03 2006 - 21:59:46 CDT)
  • B.D Allen (Sun Sep 03 2006 - 20:38:38 CDT)
  • Neelanjana Sengupta (Sun Sep 03 2006 - 15:33:32 CDT)
  • Neelanjana Sengupta (Sun Sep 03 2006 - 15:34:48 CDT)
  • Neelanjana Sengupta (Sun Sep 03 2006 - 15:29:56 CDT)
• Copying a selection
  • Axel Kohlmeyer (Mon Mar 22 2004 - 12:56:30 CST)
  • Philip Fowler (Mon Mar 22 2004 - 02:42:02 CST)
  • Adam Marcus (Mon Mar 22 2004 - 01:04:29 CST)
• copying parts of an atomselect selection
  • Travis DePuy (Tue May 25 2004 - 07:10:54 CDT)
• Copying the new alpha sources of VMD into the installation directory
  • Faisal, H M Nasrullah (Tue Aug 25 2020 - 19:09:19 CDT)
• COR format and first residue
  • Chang, Christopher (Tue Sep 27 2005 - 18:31:32 CDT)
• COR plugin for SGI
  • Josh Ward (Fri Mar 05 2004 - 08:27:57 CST)
• core API?
  • John Stone (Wed Oct 26 2005 - 14:28:43 CDT)
  • Craig Maloney (Wed Oct 26 2005 - 13:46:38 CDT)
• core dump
  • John Stone (Mon Apr 24 2006 - 03:45:08 CDT)
  • Praveen Madala (Mon Apr 24 2006 - 03:14:15 CDT)
• core dump when launching vmd1.8a21
  • Margaret Cheung (Thu Oct 24 2002 - 21:05:30 CDT)
  • John Stone (Thu Oct 24 2002 - 20:36:16 CDT)
  • Margaret Cheung (Thu Oct 24 2002 - 20:31:28 CDT)
  • B. Bennion (Thu Oct 24 2002 - 20:30:05 CDT)
  • John Stone (Thu Oct 24 2002 - 19:55:21 CDT)
  • Margaret Cheung (Thu Oct 24 2002 - 19:49:42 CDT)
• core when using some features of vmd-xplor
  • John Stone (Thu May 06 2004 - 16:45:02 CDT)
  • Charles_at_Schwieters.org (Thu May 06 2004 - 16:03:01 CDT)
  • Pilar Saiz Vela (Thu May 06 2004 - 13:10:48 CDT)
• correct "origin" in VMD
  • John Stone (Mon Sep 16 2019 - 20:11:43 CDT)
  • Vermaas, Joshua (Mon Sep 16 2019 - 18:17:44 CDT)
  • Michael Morgan (Mon Sep 16 2019 - 16:44:47 CDT)
• Correlated motion
  • Axel Kohlmeyer (Wed Jun 28 2006 - 14:51:52 CDT)
  • Leyla Celik (Wed Jun 28 2006 - 11:19:27 CDT)
• correlation
  • Axel Kohlmeyer (Sun Mar 08 2009 - 10:33:03 CDT)
  • Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
• Correlation Functions
  • Neelanjana Sengupta (Tue Dec 12 2006 - 14:39:13 CST)
  • Juan Diaz (Tue Dec 12 2006 - 14:39:52 CST)
  • Juan Diaz (Tue Dec 12 2006 - 13:29:49 CST)
• Correlation matrix illustration via heating map
  • Maghsoud, Yazdan (Sun Aug 28 2022 - 11:08:11 CDT)
• corrigendum: error when solvating a system
  • L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:51:54 CDT)
• Corrupt cpmd-vmd.pdf File?
  • rossi_at_york.cuny.edu (Mon Aug 20 2007 - 20:03:02 CDT)
  • Axel Kohlmeyer (Thu Aug 09 2007 - 16:39:02 CDT)
  • rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:46:07 CDT)
  • rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:42:54 CDT)
• Could not load .nc file in MAC installed VMD
  • Prathit Chatterjee (Thu Mar 18 2021 - 01:46:47 CDT)
  • Mortimer Hemmit (Wed Mar 17 2021 - 12:45:15 CDT)
  • Prathit Chatterjee (Wed Mar 17 2021 - 03:03:39 CDT)
• Could not locate 'dowser' (Program not found message box)
  • John Stone (Thu Jan 17 2008 - 10:43:25 CST)
  • Stanley, Yemin Shi (Thu Jan 17 2008 - 07:31:22 CST)
• could not make avi file
  • John Stone (Tue Apr 13 2004 - 13:33:33 CDT)
  • Albert Sun (Tue Apr 13 2004 - 10:58:49 CDT)
• could not read file no atoms found error
  • RAHUL SURESH (Thu Jan 23 2020 - 05:17:37 CST)
  • Ashar Malik (Thu Jan 23 2020 - 05:13:57 CST)
  • Adupa Vasista (Thu Jan 23 2020 - 04:51:21 CST)
  • Yogesh Sharma (Thu Jan 23 2020 - 02:56:10 CST)
• Could not read file problem
  • PaweÅ‚ KÄ™dzierski (Fri Jul 23 2021 - 10:55:22 CDT)
  • Chris Neale (Fri Jul 23 2021 - 09:42:54 CDT)
  • Vermaas, Josh (Fri Jul 23 2021 - 08:39:58 CDT)
  • Igor Gordiy (Fri Jul 23 2021 - 04:33:46 CDT)
• could not visualize DCD file downloaded from VMD website
  • Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
  • Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
  • Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
  • Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
• couldn't execute "psfgen": no such file or directory
  • John Stone (Thu Dec 10 2015 - 11:34:05 CST)
  • zeynab hoseyni (Wed Dec 09 2015 - 12:50:37 CST)
  • Axel Kohlmeyer (Mon Dec 07 2015 - 07:03:19 CST)
  • zeynab hoseyni (Sun Dec 06 2015 - 07:46:33 CST)
  • Axel Kohlmeyer (Sun Dec 06 2015 - 07:26:56 CST)
  • zeynab hoseyni (Sun Dec 06 2015 - 07:02:21 CST)
• couldn't fork child process: not enough memory
  • jrui_at_ci.uc.pt (Fri Feb 22 2008 - 08:41:54 CST)
  • Peter Freddolino (Fri Feb 22 2008 - 06:48:23 CST)
  • jrui_at_ci.uc.pt (Fri Feb 22 2008 - 05:13:16 CST)
  • John Stone (Thu Feb 21 2008 - 15:39:30 CST)
  • Axel Kohlmeyer (Thu Feb 21 2008 - 15:28:16 CST)
  • jrui_at_ci.uc.pt (Thu Feb 21 2008 - 13:47:06 CST)
• Couldn't load the trajectory on to vmd
  • Lutz Maibaum (Tue May 12 2015 - 13:40:07 CDT)
  • Seera Suryanarayana (Tue May 12 2015 - 03:34:21 CDT)
• Couldn't locate ppmtompeg
  • Axel Kohlmeyer (Thu Nov 10 2011 - 15:47:31 CST)
  • Magnus Andersson (Thu Nov 10 2011 - 16:03:41 CST)
  • Rabab Toubar (Thu Nov 10 2011 - 14:57:58 CST)
• couldn't open "c:/multiseq-406080740227.start.domain": invalid argument
  • Maurice O'Connell (Thu Feb 21 2008 - 12:30:26 CST)
• Couldn't open required GL library
  • John Stone (Fri Aug 16 2002 - 15:13:30 CDT)
  • John Stone (Fri Aug 16 2002 - 14:40:18 CDT)
  • John Stone (Fri Aug 09 2002 - 15:32:33 CDT)
  • J. Rui Rodrigues (Thu Aug 08 2002 - 18:48:37 CDT)
• Couldn't read internal coordinate table and list index out of range
  • Ruijie Darius Teo (Tue Feb 23 2021 - 20:23:57 CST)
  • Gumbart, JC (Tue Feb 23 2021 - 19:28:33 CST)
  • Ruijie Darius Teo (Tue Feb 23 2021 - 19:24:42 CST)
  • Gumbart, JC (Tue Feb 23 2021 - 19:00:32 CST)
  • Ruijie Darius Teo (Tue Feb 23 2021 - 13:58:49 CST)
• count CLA number from different frames
  • JC Gumbart (Fri Mar 11 2011 - 20:47:02 CST)
  • emiliawu_at_dicp.ac.cn (Sat Mar 12 2011 - 07:16:32 CST)
• count variable number of molecules
  • John Stone (Wed Mar 07 2007 - 16:45:56 CST)
  • Alexandr Isayev (Wed Feb 28 2007 - 14:23:11 CST)
• Count waters inside a specified box
  • Manish (Wed Sep 07 2011 - 09:19:55 CDT)
  • Jérôme Hénin (Wed Sep 07 2011 - 06:18:06 CDT)
  • Manish (Tue Sep 06 2011 - 11:11:40 CDT)
• counting gas molecules inside the nanotube
  • bo liu (Fri Sep 19 2008 - 11:38:19 CDT)
  • John Stone (Thu Sep 18 2008 - 12:29:34 CDT)
  • Alexander A. Vakhrushev (Thu Sep 18 2008 - 12:11:04 CDT)
  • John Stone (Thu Sep 18 2008 - 11:18:43 CDT)
  • mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
• Counting H-bonds from a dcd file
  • Axel Kohlmeyer (Tue Aug 29 2006 - 19:16:19 CDT)
  • Nitin Bhardwaj (Tue Aug 29 2006 - 18:15:56 CDT)
  • Axel Kohlmeyer (Tue Aug 29 2006 - 17:42:56 CDT)
  • Nitin Bhardwaj (Tue Aug 29 2006 - 17:06:21 CDT)
• Counting number of hydrogen bonds in the representation
  • Uday K. Chippada (Wed Sep 15 2004 - 13:21:59 CDT)
  • Justin Gullingsrud (Wed Sep 15 2004 - 07:30:39 CDT)
  • Ahmet Bakan (Wed Sep 15 2004 - 07:44:29 CDT)
  • Ahmet Bakan (Wed Sep 15 2004 - 03:39:56 CDT)
  • Uday K. Chippada (Tue Sep 14 2004 - 16:38:20 CDT)
• Counting number of water molecules
  • Bernardo Sosa Padilla Araujo (Thu Dec 10 2009 - 18:48:20 CST)
  • Andrew Dalke (Wed Dec 09 2009 - 17:20:43 CST)
  • Axel Kohlmeyer (Wed Dec 09 2009 - 17:32:07 CST)
  • Bernardo Sosa Padilla Araujo (Wed Dec 09 2009 - 16:30:13 CST)
• counting selected atoms---selection time series
  • Jérôme Hénin (Thu Sep 01 2005 - 02:05:32 CDT)
  • Axel Kohlmeyer (Thu Sep 01 2005 - 01:16:43 CDT)
  • Daniel Barsky (Wed Aug 31 2005 - 12:57:32 CDT)
• counting specific atom types
  • Axel Kohlmeyer (Tue May 08 2012 - 09:24:20 CDT)
  • Ana Celia Vila Verde (Tue May 08 2012 - 09:31:23 CDT)
  • winardi, erik (Tue May 08 2012 - 08:37:01 CDT)
• Counting the number of ligand molecules around my protein
  • Josh Vermaas (Thu Apr 16 2020 - 11:42:08 CDT)
  • amin sagar (Thu Apr 16 2020 - 11:30:24 CDT)
  • Akash Pandya (Thu Apr 16 2020 - 10:27:16 CDT)
  • Adupa Vasista (Thu Apr 16 2020 - 09:44:21 CDT)
  • Akash Pandya (Thu Apr 16 2020 - 09:22:00 CDT)
  • Adupa Vasista (Thu Apr 16 2020 - 08:24:27 CDT)
  • Akash Pandya (Thu Apr 16 2020 - 07:17:02 CDT)
• Counting water transition through a channel
  • nicolas martin (Thu Mar 19 2015 - 09:29:20 CDT)
  • Adelman, Joshua Lev (Thu Mar 19 2015 - 08:29:51 CDT)
  • nicolas martin (Thu Mar 19 2015 - 03:04:26 CDT)
• covalent atomic radii customization
  • John Stone (Wed Oct 21 2020 - 13:42:10 CDT)
  • fulvio ciriaco (Thu Oct 08 2020 - 14:18:30 CDT)
• covalent bond
  • Alexei Rossokhin (Wed Jul 05 2023 - 09:18:37 CDT)
• covalently bonded atoms
  • Axel Kohlmeyer (Mon Oct 12 2009 - 12:41:31 CDT)
  • politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
• cp: cannot stat `../LINUXAMD64/vmd_LINUXAMD64': No such file or directory
  • Axel Kohlmeyer (Mon Mar 18 2013 - 11:00:26 CDT)
  • §õ¤å¤Z (Mon Mar 18 2013 - 09:16:44 CDT)
• CPK Graphical Representation
  • Jawahar Neelankatan (Fri Oct 20 2006 - 19:05:49 CDT)
  • Alexandr Isayev (Fri Oct 20 2006 - 11:48:40 CDT)
  • Axel Kohlmeyer (Fri Oct 20 2006 - 11:48:23 CDT)
  • Axel Kohlmeyer (Fri Oct 20 2006 - 10:40:46 CDT)
  • Jawahar Neelankatan (Fri Oct 20 2006 - 05:57:20 CDT)
• cpptraj-nastruct + VMD
  • Thomas C. Bishop (Wed May 25 2016 - 18:30:18 CDT)
• CPU comparison
  • Gianluca Interlandi (Fri May 20 2016 - 22:09:16 CDT)
• Crack generation in Grapehene sheet
  • Giacomo Fiorin (Tue Dec 19 2017 - 07:49:40 CST)
  • sumit nagar (Tue Dec 19 2017 - 03:56:32 CST)
• crash on ubuntu linux
  • Sabuj Pattanayek (Sun Sep 04 2005 - 13:32:25 CDT)
  • Jay McAliley (Sat Sep 03 2005 - 11:41:59 CDT)
• crash with 1.9.2 and not with 1.9.1
  • John Stone (Thu Apr 09 2015 - 09:40:36 CDT)
  • andrea spitaleri (Thu Apr 09 2015 - 08:23:58 CDT)
  • Axel Kohlmeyer (Thu Apr 09 2015 - 08:16:24 CDT)
  • andrea spitaleri (Thu Apr 09 2015 - 08:14:50 CDT)
  • Axel Kohlmeyer (Thu Apr 09 2015 - 07:44:43 CDT)
  • andrea spitaleri (Thu Apr 09 2015 - 07:14:52 CDT)
• Crash with molfile plugin when doing "Load data into molecule"
  • Axel Kohlmeyer (Fri Jan 24 2014 - 05:26:53 CST)
  • Daniel Russel (Thu Jan 23 2014 - 23:23:06 CST)
• Crating 3D PDF files
  • John Stone (Mon Apr 17 2017 - 08:46:11 CDT)
  • James Kress (Tue Apr 11 2017 - 13:36:56 CDT)
• CRD problems and CRD to DCD conversion
  • Mark Zottola - Contractor (Wed Nov 13 2002 - 16:04:39 CST)
  • B. Bennion (Wed Nov 13 2002 - 15:48:57 CST)
  • John Stone (Wed Nov 13 2002 - 15:06:39 CST)
  • Mark Zottola - Contractor (Wed Nov 13 2002 - 14:59:33 CST)
• Create a new color category
  • John Stone (Wed Jun 22 2005 - 14:19:38 CDT)
  • John Stone (Tue Jun 21 2005 - 15:52:39 CDT)
  • Dow Hurst DPHURST (Tue Jun 21 2005 - 12:25:52 CDT)
• Create a PSF
  • Peter Freddolino (Fri Sep 21 2007 - 07:27:34 CDT)
  • Peter Freddolino (Fri Sep 21 2007 - 06:57:23 CDT)
  • Èùìáò Åõáããåëéäçò (Fri Sep 21 2007 - 06:12:49 CDT)
  • Andrea.Cristiani_at_pharm.unige.ch (Fri Sep 21 2007 - 04:16:37 CDT)
• create and operate a point in space
  • Axel Kohlmeyer (Wed Oct 09 2013 - 06:29:51 CDT)
  • sunyeping (Wed Oct 09 2013 - 05:15:44 CDT)
• Create atom selection from list of integers
  • Claw Isthelaw (Mon Jun 02 2008 - 13:10:12 CDT)
  • Joaquim Rui Rodrigues (Mon Jun 02 2008 - 12:10:28 CDT)
  • Leonardo Trabuco (Mon Jun 02 2008 - 11:15:58 CDT)
  • Leonardo Trabuco (Mon Jun 02 2008 - 11:51:09 CDT)
  • Axel Kohlmeyer (Mon Jun 02 2008 - 11:08:16 CDT)
  • Claw Isthelaw (Mon Jun 02 2008 - 11:01:49 CDT)
• Create Binding Pocket of Every PDB File In A Directory Using TCL Scripts and Atomselect Command protein and within 4 of resname LIG
  • Ashar Malik (Mon Jul 20 2020 - 16:06:03 CDT)
  • Bassam Haddad (Mon Jul 20 2020 - 13:31:24 CDT)
  • Bassam Haddad (Mon Jul 20 2020 - 12:58:36 CDT)
  • William Howe (Mon Jul 20 2020 - 11:12:54 CDT)
• Create bonds in VMD
  • Giacomo Fiorin (Tue Apr 11 2023 - 16:16:29 CDT)
  • Rajorshi Chattopadhyay (Tue Apr 11 2023 - 15:21:54 CDT)
• create bonds with uniform pairwise cut off radius for XYZ trajectories.
  • Axel Kohlmeyer (Fri Sep 26 2014 - 06:47:40 CDT)
  • Axel Kohlmeyer (Fri Sep 26 2014 - 06:46:27 CDT)
  • khannan krishna (Fri Sep 26 2014 - 06:14:22 CDT)
  • khannan krishna (Fri Sep 26 2014 - 05:05:52 CDT)
  • Axel Kohlmeyer (Fri Sep 26 2014 - 03:59:32 CDT)
  • khannan krishna (Fri Sep 26 2014 - 00:48:04 CDT)
• Create CHARMM COR files with VMD
  • Axel Kohlmeyer (Tue Jul 26 2022 - 12:09:13 CDT)
  • Prathit Chatterjee (Tue Jul 26 2022 - 08:50:27 CDT)
• Create covalent bonds between 2 atoms via Tk console
  • Josh Vermaas (Mon May 25 2020 - 11:19:29 CDT)
  • Hélder Bandarra Tavares (Mon May 25 2020 - 09:29:15 CDT)
• create images in vmd
  • Axel Kohlmeyer (Fri Feb 03 2012 - 06:34:53 CST)
  • oguz gurbulak (Fri Feb 03 2012 - 06:21:28 CST)
  • oguz gurbulak (Fri Feb 03 2012 - 05:34:54 CST)
• create movie from multiple frames
  • Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
• Create multiple tcl interpreter child instances within VMD to run several scripts at once
  • Axel Kohlmeyer (Thu Feb 16 2012 - 12:46:48 CST)
  • Salvatore Mario Cosseddu (Thu Feb 16 2012 - 12:04:17 CST)
  • John Stone (Thu Feb 16 2012 - 11:52:15 CST)
  • Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:49:55 CST)
  • Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:23:15 CST)
  • John Stone (Thu Feb 16 2012 - 11:40:11 CST)
• Create new atoms
  • John Stone (Wed Nov 07 2018 - 14:30:01 CST)
  • Axel Kohlmeyer (Wed Nov 07 2018 - 14:32:13 CST)
  • Michail Lazaratos (Wed Nov 07 2018 - 13:45:21 CST)
• create new colors
  • Justin Gullingsrud (Fri Mar 08 2002 - 11:39:58 CST)
  • Fei Xu (Thu Mar 07 2002 - 10:49:25 CST)
• create new topology file for new molecule
  • _at_huji.ac.il (Tue Jan 09 2007 - 10:06:25 CST)
• create new topology file for new molecule]
  • Peter Freddolino (Wed Jan 10 2007 - 08:51:29 CST)
  • Axel Kohlmeyer (Wed Jan 10 2007 - 08:39:17 CST)
  • _at_huji.ac.il (Wed Jan 10 2007 - 03:01:50 CST)
  • Peter Freddolino (Tue Jan 09 2007 - 11:11:04 CST)
• create psf and dcd from pdb
  • Peter Freddolino (Tue Aug 14 2007 - 10:56:07 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Aug 14 2007 - 10:25:15 CDT)
  • Èùìáò Åõáããåëéäçò (Mon Aug 13 2007 - 16:26:27 CDT)
  • Peter Freddolino (Mon Aug 13 2007 - 17:35:01 CDT)
• create psf file without hydrogens
  • Revthi Sanker (Fri Nov 21 2014 - 03:23:41 CST)
  • Josh Vermaas (Thu Nov 20 2014 - 13:55:24 CST)
  • Revthi Sanker (Thu Nov 20 2014 - 12:26:13 CST)
• Create Straight Peptide Molefacture Protein Builder
  • Miro Astore (Sat Oct 12 2019 - 17:14:12 CDT)
  • Mortimer Hemmit (Sat Oct 12 2019 - 16:31:04 CDT)
• create surface of overlapping VdW volume
  • Dow Hurst (Sat Jun 11 2011 - 11:08:43 CDT)
  • Dow Hurst (Fri Jun 10 2011 - 18:17:50 CDT)
• Creating 3D PDF files
  • James Kress (Wed Apr 19 2017 - 09:06:56 CDT)
• Creating a .tpr file from NAMD files Error
  • Ethan Croitoru (Wed Aug 05 2020 - 13:30:05 CDT)
  • Josh Vermaas (Wed Aug 05 2020 - 13:45:27 CDT)
  • Josh Vermaas (Wed Aug 05 2020 - 11:54:56 CDT)
  • Ethan Croitoru (Wed Aug 05 2020 - 10:23:49 CDT)
• Creating a constraints file(.pdb) from NMR constraints file(.mr)
  • Nick Palmer (Thu May 24 2018 - 15:40:08 CDT)
• Creating a cuboid box to fit in atoms
  • Leandro Martínez (Thu Sep 25 2008 - 14:51:00 CDT)
  • Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
• Creating a demo - updating the OpenGL window
  • John Stone (Mon Jun 20 2005 - 14:40:54 CDT)
  • Palmer, Teresa (Mon Jun 20 2005 - 14:30:22 CDT)
• Creating a fragment of the given protein
  • JC Gumbart (Mon Sep 19 2011 - 01:56:14 CDT)
  • Trung Nguyen Duc (Sun Sep 18 2011 - 11:43:18 CDT)
• creating a modified pdb/psf file
  • Axel Kohlmeyer (Tue Aug 14 2012 - 07:25:42 CDT)
  • Monika Madhavi (Tue Aug 14 2012 - 07:11:33 CDT)
  • Sean T Kigerl (Tue Aug 14 2012 - 00:43:26 CDT)
• Creating a pdb of periodic images of a unit cell
  • Vermaas, Joshua (Wed Nov 21 2018 - 11:43:43 CST)
  • Devanand T (Wed Nov 21 2018 - 00:19:11 CST)
  • Monika Madhavi (Tue Nov 20 2018 - 23:19:09 CST)
• creating a povray file
  • John Stone (Wed Feb 17 2010 - 16:07:16 CST)
  • gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 15:56:34 CST)
  • gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 10:44:02 CST)
  • John Stone (Wed Feb 17 2010 - 10:51:44 CST)
• Creating a Regular Structure
  • Fatemesadat Emami (Wed Jan 22 2014 - 18:03:05 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 18:06:39 CST)
  • Fatemesadat Emami (Wed Jan 22 2014 - 17:59:10 CST)
  • Fatemesadat Emami (Wed Jan 22 2014 - 17:38:31 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 17:48:18 CST)
• Creating a VMD movie from a Tcl script
  • John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
  • Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
  • John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
  • Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
  • Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
  • Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
  • John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
  • Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
  • Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
  • Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
  • John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
  • Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
  • Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
  • John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
  • John Stone (Thu Jul 17 2008 - 21:56:35 CDT)
  • Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
  • John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
  • Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
• creating an index file for POPC in water
  • Fotis Baltoumas (Fri Oct 03 2014 - 15:24:52 CDT)
  • Mihaela Drenscko (Fri Oct 03 2014 - 13:57:31 CDT)
• creating and appending to DCD in VMD
  • Nicholas Musolino (Thu Apr 08 2010 - 17:04:40 CDT)
  • Nicholas Musolino (Thu Apr 08 2010 - 15:50:04 CDT)
  • John Stone (Thu Apr 08 2010 - 16:18:41 CDT)
• Creating and using a tk button
  • Ali Morshedi (Tue Apr 09 2019 - 01:22:22 CDT)
  • Joao Ribeiro (Mon Apr 08 2019 - 07:25:50 CDT)
  • Ali Morshedi (Sun Apr 07 2019 - 03:34:39 CDT)
• Creating AVI movies
  • Bjoern Olausson (Mon May 10 2010 - 08:37:58 CDT)
  • Axel Kohlmeyer (Mon May 10 2010 - 08:21:13 CDT)
  • David Poger (Mon May 10 2010 - 07:28:24 CDT)
• Creating bond between two atoms
  • Nitin Bhardwaj (Tue Oct 25 2005 - 16:09:00 CDT)
  • John Stone (Mon Oct 24 2005 - 17:20:52 CDT)
  • Nitin Bhardwaj (Fri Oct 21 2005 - 13:33:00 CDT)
  • Sergio Anis (Fri Oct 21 2005 - 13:27:36 CDT)
  • John Stone (Fri Oct 21 2005 - 12:32:44 CDT)
  • Nitin Bhardwaj (Fri Oct 21 2005 - 12:05:09 CDT)
• Creating bonds using VMD
  • John Stone (Sun Apr 11 2010 - 23:07:21 CDT)
  • Mihir Tungare (Mon Mar 29 2010 - 16:34:21 CDT)
• Creating boxes of different water models
  • Axel Kohlmeyer (Sun May 24 2015 - 04:06:30 CDT)
  • Monika Madhavi (Sun May 24 2015 - 02:17:21 CDT)
• Creating Carbon Nano-tube psf file..
  • zeynab hoseyni (Sun Feb 28 2016 - 06:32:00 CST)
• creating chiral molecules
  • Ajasja LjubetiÄ� (Thu Jul 28 2011 - 05:09:29 CDT)
  • Peyman Z.Moghadam (Thu Jul 28 2011 - 04:21:16 CDT)
• Creating custom molecule in VMD scripting
  • Joaquim Rui de Castro Rodrigues (Tue Oct 29 2013 - 06:45:08 CDT)
  • Axel Kohlmeyer (Tue Oct 29 2013 - 05:36:28 CDT)
  • Luká¹ Pravda (Tue Oct 29 2013 - 04:40:29 CDT)
• Creating data file for triclinic system
  • Axel Kohlmeyer (Wed Jul 23 2014 - 07:03:17 CDT)
  • Bonakala Satyanarayana (Wed Jul 23 2014 - 01:40:58 CDT)
• Creating Dummy Atoms in VMD Using TCL Script
  • Smith, Harper E. (Fri Oct 27 2023 - 15:40:40 CDT)
  • Kevin Lin (Fri Oct 27 2023 - 15:16:45 CDT)
• creating gif animation with povray
  • John Stone (Mon Feb 05 2007 - 09:56:28 CST)
  • Vlad Cojocaru (Mon Feb 05 2007 - 03:48:54 CST)
  • John Stone (Sat Feb 03 2007 - 00:54:16 CST)
  • Vlad Cojocaru (Fri Feb 02 2007 - 04:09:12 CST)
• creating high quality movie in VMD
  • Shomesankar Bhunia (Mon Nov 11 2013 - 07:04:45 CST)
  • John Stone (Sat Nov 09 2013 - 17:39:20 CST)
  • Shomesankar Bhunia (Sat Nov 09 2013 - 12:57:10 CST)
• Creating length dependent coloured bonds in VMD
  • Axel Kohlmeyer (Tue Mar 30 2010 - 15:12:28 CDT)
  • Willie Maddox (Tue Mar 30 2010 - 14:17:33 CDT)
• creating model helices
  • Ajasja LjubetiÄ� (Mon Jun 27 2011 - 07:10:23 CDT)
  • Neelanjana Sengupta (Mon Jun 27 2011 - 06:31:03 CDT)
• creating movie files
  • John Stone (Fri Aug 12 2005 - 10:58:16 CDT)
  • Jaime Sanchez (Fri Aug 12 2005 - 08:34:15 CDT)
• Creating multiple views from same trajectory file for movie generation
  • Michael Doig (Fri Oct 03 2014 - 05:45:02 CDT)
  • Felipe Merino (Wed Oct 01 2014 - 08:36:35 CDT)
  • John Stone (Wed Oct 01 2014 - 07:43:22 CDT)
  • Michael Doig (Wed Oct 01 2014 - 07:25:04 CDT)
• creating nonstandard solvent
  • Peter Freddolino (Fri Oct 05 2007 - 10:01:12 CDT)
  • Nicolas Belloy (Fri Oct 05 2007 - 09:16:30 CDT)
  • lucie huynh (Wed Oct 03 2007 - 07:53:21 CDT)
  • Peter Freddolino (Wed Oct 03 2007 - 08:19:30 CDT)
  • Leandro Martínez (Wed Oct 03 2007 - 08:35:19 CDT)
  • Peter Freddolino (Wed Oct 03 2007 - 08:23:07 CDT)
• Creating PDB files of binding pockets that lists ligands first within the file
  • Ashar Malik (Tue Feb 02 2021 - 19:22:51 CST)
  • William Howe (Tue Feb 02 2021 - 18:14:55 CST)
• creating periodic images of an atom
  • Mgr. Lubos Vrbka (Mon Jan 23 2006 - 08:22:43 CST)
  • John Stone (Fri Jan 20 2006 - 14:39:57 CST)
  • Mgr. Lubos Vrbka (Thu Jan 19 2006 - 01:58:15 CST)
  • John Stone (Wed Jan 18 2006 - 17:08:27 CST)
  • Mgr. Lubos Vrbka (Wed Jan 18 2006 - 08:08:41 CST)
• creating psf file
  • John Stone (Tue Jul 14 2015 - 10:57:08 CDT)
  • Mai Aamer (Tue Jul 07 2015 - 16:10:29 CDT)
  • John Stone (Fri May 27 2011 - 14:37:59 CDT)
  • seda demirci (Fri May 27 2011 - 10:13:05 CDT)
  • Eduard Schreiner (Sun Sep 19 2010 - 21:39:29 CDT)
  • John Stone (Sun Sep 19 2010 - 20:09:03 CDT)
  • unni kuttan (Mon Aug 30 2010 - 12:14:15 CDT)
• Creating psf file for graphene sheet
  • Monika Madhavi (Thu Aug 02 2012 - 04:10:07 CDT)
• Creating PSF from PDB files
  • Shehan Parmar (Thu Sep 07 2017 - 22:15:34 CDT)
• creating psf from pgn
  • John Stone (Tue Apr 29 2008 - 16:09:24 CDT)
  • S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
• creating psf with trimethoprim
  • Charles Moad (Wed May 11 2005 - 21:38:14 CDT)
• creating scripts
  • Chang, Christopher (Fri Jun 03 2005 - 17:50:51 CDT)
  • Mark A. Hallman (Fri Jun 03 2005 - 16:00:54 CDT)
• creating SiO2 device with Inorganic Builder
  • Marzieh Alishahi (Sat Nov 17 2012 - 02:36:22 CST)
• creating spherical water droplet
  • Justin Gullingsrud (Fri Dec 27 2002 - 09:46:09 CST)
  • Rukman Hertadi (Thu Dec 26 2002 - 19:41:52 CST)
• Creating surfaces with desired lengths- Inorganic Builder
  • Monika Madhavi (Mon Aug 06 2012 - 23:26:37 CDT)
• creating the center of mass pdb file
  • Ashar Malik (Tue Feb 28 2017 - 15:27:07 CST)
  • Mehdi Bagherpour (Tue Feb 28 2017 - 13:22:23 CST)
• creating topology for a unique structure
  • soroush ziaei (Sun Nov 04 2018 - 05:49:31 CST)
• Creating very large solvation boxes
  • Ajasja LjubetiÄ� (Thu Oct 03 2013 - 09:06:37 CDT)
  • John Grime (Thu Oct 03 2013 - 07:36:44 CDT)
  • Josh Vermaas (Wed Oct 02 2013 - 19:47:40 CDT)
  • John Grime (Wed Oct 02 2013 - 16:45:14 CDT)
  • John Grime (Fri Sep 20 2013 - 12:12:45 CDT)
• creating videos where the representation changes throughout
  • John Stone (Thu Feb 19 2009 - 23:45:17 CST)
  • Brian Kidd (Thu Feb 19 2009 - 23:30:20 CST)
• Creating VR-movies with tachyon renderer
  • John Stone (Thu Mar 15 2018 - 00:03:16 CDT)
  • Per Larsson (Thu Mar 08 2018 - 03:49:38 CST)
  • Dallas Warren (Wed Mar 07 2018 - 16:04:53 CST)
  • Dallas Warren (Wed Mar 07 2018 - 16:10:17 CST)
  • Per Larsson (Wed Mar 07 2018 - 14:24:31 CST)
  • Vermaas, Joshua (Wed Mar 07 2018 - 12:20:30 CST)
  • Per Larsson (Wed Mar 07 2018 - 08:09:49 CST)
  • Per Larsson (Wed Mar 07 2018 - 02:09:16 CST)
  • Dallas Warren (Tue Mar 06 2018 - 14:23:07 CST)
  • Vermaas, Joshua (Tue Mar 06 2018 - 11:53:35 CST)
  • Per Larsson (Tue Mar 06 2018 - 06:52:54 CST)
• creation of psf
  • t.shivam_at_iitg.ernet.in (Thu Nov 30 2017 - 22:10:49 CST)
  • Vermaas, Joshua (Thu Nov 30 2017 - 13:15:38 CST)
  • t.shivam_at_iitg.ernet.in (Mon Nov 27 2017 - 02:40:53 CST)
• Creation of SiC NP
  • Francesco Coppola (Fri Oct 08 2021 - 11:37:59 CDT)
• Creation of Thin Amorphous SiO2 using Inorganic Builder-VMD
  • Sina Zarepakzad (Fri Jul 19 2019 - 07:32:39 CDT)
• criteria for detecting hydrogen bonds
  • Michel Espinoza-Fonseca (Sun Apr 17 2005 - 19:41:29 CDT)
  • Amarda Shehu (Sun Apr 17 2005 - 18:14:21 CDT)
• criteria for hydrogen bonds.
  • Kristine Manibog (Tue Apr 23 2013 - 19:39:17 CDT)
• cropping the missing residues from other PDB file
  • sarah k (Mon Jun 13 2011 - 10:19:05 CDT)
  • Joyce Tan (Mon Jun 13 2011 - 09:37:14 CDT)
• Cross correlation
  • John Stone (Thu Dec 05 2019 - 16:44:33 CST)
  • Vermaas, Joshua (Tue Dec 03 2019 - 11:12:45 CST)
  • Paula Mihaljevic-Juric (Tue Dec 03 2019 - 08:17:02 CST)
• cross correlation in VMD
  • Simon Whitehead (Mon Dec 12 2005 - 12:19:30 CST)
• Cross-correlation coefficient calculated MDFF package
  • Ryan McGreevy (Mon Feb 09 2015 - 10:36:55 CST)
  • Kevin C Chan (Mon Feb 09 2015 - 06:47:21 CST)
• Crosseye stereo image rendering
  • John Kerrigan (Tue Feb 01 2005 - 18:20:27 CST)
  • Wang, Yangzhou (Tue Feb 01 2005 - 16:43:24 CST)
  • John Stone (Tue Feb 01 2005 - 15:32:03 CST)
  • Wang, Yangzhou (Tue Feb 01 2005 - 15:06:07 CST)
• crystal eyes vmd
  • John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
  • Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
  • John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
  • John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
  • John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
• Crystal water
  • Axel Kohlmeyer (Thu May 22 2008 - 05:23:24 CDT)
  • INPE (Ingrid Viveka Pettersson) (Thu May 22 2008 - 04:32:59 CDT)
• crystallographic symmetry tool
  • Daniel Barsky (Wed Dec 05 2001 - 19:11:35 CST)
• cube file question
  • Axel Kohlmeyer (Fri Jan 09 2009 - 08:23:16 CST)
  • Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
• cube file: coordinates rotated
  • Axel Kohlmeyer (Thu Feb 22 2007 - 09:07:28 CST)
  • Yaser Khan (Wed Feb 21 2007 - 20:05:32 CST)
• Cube Files - proportion of the electron density
  • Axel Kohlmeyer (Tue Oct 09 2007 - 16:40:25 CDT)
  • John Stone (Tue Oct 09 2007 - 14:38:06 CDT)
  • Jay Shore (Tue Oct 09 2007 - 14:10:35 CDT)
  • Axel Kohlmeyer (Sun Oct 07 2007 - 18:14:00 CDT)
  • Jay Shore (Sun Oct 07 2007 - 15:50:40 CDT)
• CUBIC box of system
  • Axel Kohlmeyer (Thu Jun 03 2004 - 12:44:37 CDT)
  • Ran Friedman (Thu Jun 03 2004 - 14:56:23 CDT)
  • Axel Kohlmeyer (Thu Jun 03 2004 - 07:22:09 CDT)
  • Raghunadha Reddy Burri (Thu Jun 03 2004 - 03:24:54 CDT)
• CUDA 10
  • Jérôme Hénin (Thu Nov 22 2018 - 11:30:53 CST)
  • John Stone (Thu Nov 22 2018 - 09:12:31 CST)
  • Jérôme Hénin (Thu Nov 22 2018 - 06:47:27 CST)
• CUDA acceleration for Tachyon rendering?
  • Eiros Zamora, Juan (Fri Dec 02 2016 - 04:48:37 CST)
  • Vermaas, Joshua (Thu Dec 01 2016 - 15:20:44 CST)
  • John Stone (Thu Dec 01 2016 - 15:06:03 CST)
  • Eiros Zamora, Juan (Thu Dec 01 2016 - 13:41:59 CST)
• Cuda an a cluster ?
  • Christian Wohlschlager (Fri Oct 23 2009 - 00:20:59 CDT)
  • John Stone (Thu Oct 22 2009 - 11:04:45 CDT)
  • Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
• CUDA cores seen by VMD on GT540M
  • PaweÅ‚ KÄ™dzierski (Thu Sep 01 2011 - 08:07:26 CDT)
  • John Stone (Wed Aug 31 2011 - 10:19:39 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 10:17:39 CDT)
  • Pawe³ Kêdzierski (Wed Aug 31 2011 - 09:02:09 CDT)
• CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ?
  • Joshua A. Anderson (Wed Jan 25 2012 - 14:50:27 CST)
  • John Stone (Wed Jan 25 2012 - 09:59:13 CST)
  • Axel Kohlmeyer (Thu Jan 19 2012 - 13:55:04 CST)
  • Joshua A. Anderson (Thu Jan 19 2012 - 14:02:42 CST)
  • John Stone (Thu Jan 19 2012 - 13:07:25 CST)
  • Joshua A. Anderson (Thu Jan 19 2012 - 12:47:21 CST)
  • John Stone (Fri Jan 13 2012 - 14:52:45 CST)
  • John Stone (Thu Jan 12 2012 - 10:48:06 CST)
  • Joshua D. Moore (Wed Jan 11 2012 - 19:09:50 CST)
  • John Stone (Thu Jan 05 2012 - 15:14:17 CST)
  • Joshua D. Moore (Fri Dec 30 2011 - 19:07:05 CST)
  • Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
• CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu
  • Chris Taylor (Mon Apr 17 2023 - 22:40:59 CDT)
  • John Stone (Mon Apr 17 2023 - 11:13:20 CDT)
  • Chris Taylor (Mon Apr 10 2023 - 20:08:42 CDT)
  • John Stone (Mon Apr 10 2023 - 00:58:11 CDT)
  • Chris Taylor (Sun Apr 09 2023 - 22:07:14 CDT)
• CUDA errors for graphics card in Linux
  • John Stone (Wed May 28 2014 - 16:09:48 CDT)
  • Matthew J. Comstock (Wed May 28 2014 - 16:07:29 CDT)
  • John Stone (Wed May 28 2014 - 14:35:00 CDT)
  • John Stone (Wed May 28 2014 - 14:33:45 CDT)
  • Matthew J. Comstock (Wed May 28 2014 - 14:06:23 CDT)
• CUDA issues
  • John Stone (Mon Mar 08 2010 - 11:19:00 CST)
  • Filippo Federici (Fri Mar 05 2010 - 01:38:40 CST)
  • John Stone (Thu Mar 04 2010 - 13:54:49 CST)
  • Axel Kohlmeyer (Thu Mar 04 2010 - 13:16:58 CST)
  • Filippo Federici Canova (Thu Mar 04 2010 - 11:54:09 CST)
  • Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
  • John Stone (Thu Mar 04 2010 - 10:32:06 CST)
  • John Stone (Thu Mar 04 2010 - 08:11:53 CST)
  • Filippo Federici (Thu Mar 04 2010 - 01:18:14 CST)
• CUDA out of memory
  • Ajasja LjubetiÄ� (Mon Mar 15 2010 - 04:41:14 CDT)
  • John Stone (Mon Mar 15 2010 - 10:20:37 CDT)
  • John Stone (Fri Mar 12 2010 - 09:02:19 CST)
  • Ajasja LjubetiÄ� (Fri Mar 12 2010 - 08:22:40 CST)
• CUDA Support
  • John Stone (Tue Aug 18 2009 - 01:18:10 CDT)
  • Christian Wohlschlager (Tue Aug 18 2009 - 01:06:27 CDT)
  • John Stone (Wed Aug 12 2009 - 07:55:30 CDT)
  • Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
• CUDA-NAMD hangs -- check the Northbridge temp!
  • Biff Forbush (Tue Jan 05 2010 - 21:51:51 CST)
• Curious about analytical capabilities of VMD
  • Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
  • Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
  • Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
  • Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
  • Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
  • Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
  • Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
• cursor size/shape in pick mode
  • Mads Nørregaard-Madsen (Fri May 02 2003 - 12:04:45 CDT)
  • John Stone (Thu May 01 2003 - 08:30:57 CDT)
  • Mads Nørregaard-Madsen (Thu May 01 2003 - 03:43:32 CDT)
• custom color on surface plot
  • Axel Kohlmeyer (Thu Apr 10 2014 - 09:57:41 CDT)
  • Beat Meier (Thu Apr 10 2014 - 09:09:05 CDT)
• custom db in Multiseq
  • Elijah Roberts (Tue May 22 2007 - 16:01:53 CDT)
  • John Eargle (Fri May 18 2007 - 14:02:09 CDT)
  • Armen Nalian (Fri May 18 2007 - 12:29:41 CDT)
  • John Eargle (Fri May 18 2007 - 11:32:51 CDT)
  • Armen Nalian (Thu May 17 2007 - 18:48:01 CDT)
• Custom particle shapes
  • John Stone (Sun Mar 07 2021 - 14:55:31 CST)
  • Johannes Haataja (Sun Mar 07 2021 - 08:31:07 CST)
  • Gumbart, JC (Sat Mar 06 2021 - 17:02:07 CST)
  • Johannes Haataja (Sat Mar 06 2021 - 13:58:14 CST)
  • John Stone (Sat Mar 06 2021 - 12:46:29 CST)
  • Johannes Haataja (Sat Mar 06 2021 - 06:27:04 CST)
• Custom residue in mutate psfgen
  • Prof. Eddie (Tue Mar 02 2021 - 07:56:53 CST)
  • Michael Robinson (Tue Mar 02 2021 - 05:53:35 CST)
  • Prof. Eddie (Mon Mar 01 2021 - 14:10:15 CST)
• custom residue ribbon/cartoon representation issue
  • Do Yong Kim (Tue Oct 01 2013 - 10:59:08 CDT)
• Custom selection variable
  • Josh (Fri Aug 11 2023 - 08:32:12 CDT)
  • Bart Bruininks (Tue Aug 08 2023 - 09:12:23 CDT)
• Custom Visualization of Atom Properties Change with Color
  • Nima Nouri (Sun Mar 16 2014 - 16:59:58 CDT)
• Custom VMD script development service for fee
  • Andrew Dalke (Fri Jun 08 2018 - 06:57:14 CDT)
  • Neeraj (Thu Jun 07 2018 - 15:08:32 CDT)
• Custom Water Box
  • Vermaas, Joshua (Fri Aug 12 2016 - 13:43:10 CDT)
  • Vermaas, Joshua (Wed Jul 27 2016 - 15:08:29 CDT)
  • Richard Wood (Wed Jul 27 2016 - 14:17:39 CDT)
  • Amy Rice (Wed Jul 27 2016 - 12:46:51 CDT)
  • Jackson Cavett (Tue Jul 26 2016 - 19:13:32 CDT)
  • James Kress (Mon Jul 25 2016 - 22:00:08 CDT)
  • Jackson Cavett (Mon Jul 25 2016 - 20:34:31 CDT)
• Customized radii
  • Axel Kohlmeyer (Tue May 22 2007 - 12:56:58 CDT)
  • Manali Joshi (Tue May 22 2007 - 13:04:27 CDT)
• Customizing vdw radius
  • John Stone (Tue Feb 17 2004 - 10:32:22 CST)
  • Marcin Krol (Tue Feb 17 2004 - 03:57:21 CST)
• Customizing VMD Sessions
  • John Stone (Thu Apr 14 2005 - 09:46:01 CDT)
  • Axel Kohlmeyer (Thu Apr 14 2005 - 08:45:00 CDT)
  • Adrian Koh (Thu Apr 14 2005 - 06:03:41 CDT)
  • Olaf Lenz (Thu Apr 14 2005 - 05:39:22 CDT)
  • Axel Kohlmeyer (Thu Apr 14 2005 - 05:39:38 CDT)
  • Adrian Koh (Thu Apr 14 2005 - 02:49:19 CDT)
• Cutting a bond
  • Axel Kohlmeyer (Wed May 19 2010 - 14:33:01 CDT)
  • Francesco Pietra (Wed May 19 2010 - 13:52:18 CDT)
• Cutting a sphere with a specified radius along a trajectory
  • Axel Kohlmeyer (Fri Jan 27 2012 - 17:24:23 CST)
  • John Stone (Fri Jan 27 2012 - 17:17:43 CST)
  • Mustafa Tekpinar (Fri Jan 27 2012 - 16:26:29 CST)
• Cutting and replacing in VMD
  • Kalyan Madanapalli (Sat Jun 03 2017 - 16:26:45 CDT)
• cutting short a DMPC bilayer in VMD
  • Jerome Henin (Sat Oct 07 2006 - 11:33:03 CDT)
  • Akshay Patny (Thu Oct 05 2006 - 21:23:43 CDT)
• cvs
  • Christian Wohlschlager (Tue Jul 14 2015 - 01:02:05 CDT)
  • John Stone (Mon Jul 13 2015 - 09:43:24 CDT)
  • Axel Kohlmeyer (Mon Jul 13 2015 - 03:06:18 CDT)
  • Christian Wohlschlager (Mon Jul 13 2015 - 02:08:53 CDT)
• CVS access is back online...
  • John Stone (Fri Aug 06 2004 - 16:08:41 CDT)
  • Jerry Ebalunode (Fri Aug 06 2004 - 06:53:15 CDT)
  • John Stone (Fri Aug 06 2004 - 10:12:15 CDT)
• cvs plugins do not compile because of errors in the sgsmooth.C
  • Cojocaru,Vlad (Tue Mar 31 2009 - 13:40:47 CDT)
  • John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
• CVS root directory not found
  • Jerry Ebalunode (Mon Aug 02 2004 - 10:57:47 CDT)
  • John Stone (Mon Aug 02 2004 - 16:10:27 CDT)
• Cyclic peptide Nanotube
  • Nikhil Maroli (Fri Oct 02 2015 - 08:52:59 CDT)
• Cyclic peptide nanotube psf second mail
  • Tristan Croll (Tue Oct 13 2015 - 02:00:43 CDT)
  • Nikhil Maroli (Tue Oct 13 2015 - 00:42:55 CDT)
• cyclic peptides
  • Alisha \ (Fri Jul 22 2011 - 13:09:55 CDT)
• Cycling between files using the same output file
  • Windle,Stephen (Sun Dec 17 2017 - 13:21:09 CST)
  • Vermaas, Joshua (Fri Dec 15 2017 - 20:03:57 CST)
  • Ashar Malik (Fri Dec 15 2017 - 17:34:44 CST)
  • Windle,Stephen (Fri Dec 15 2017 - 16:39:25 CST)
• cylindrical water
  • Rukman Hertadi (Fri Jan 24 2003 - 04:22:28 CST)
• Cylindrical water box
  • Liu, Zhanwu (Fri Jan 03 2003 - 08:49:53 CST)
• Dangerous bug with pbwithin selection?
  • Norman Geist (Fri Jun 26 2020 - 06:24:02 CDT)
• Dangling Bonds
  • John Stone (Fri Apr 03 2020 - 10:58:36 CDT)
  • Anthony Ruth (Fri Apr 03 2020 - 10:29:06 CDT)
  • Josh Vermaas (Thu Apr 02 2020 - 15:55:08 CDT)
  • Anthony Ruth (Thu Apr 02 2020 - 14:46:33 CDT)
• data analysis script help
  • Axel Kohlmeyer (Tue Sep 17 2013 - 08:18:57 CDT)
  • Martin, Erik W (Mon Sep 16 2013 - 11:51:15 CDT)
• Data fields in vmd
  • Axel Kohlmeyer (Thu Jan 15 2009 - 14:10:26 CST)
  • Cesar Luis Avila (Thu Jan 15 2009 - 13:27:14 CST)
  • Cesar Luis Avila (Thu Jan 15 2009 - 12:33:09 CST)
  • John Stone (Thu Jan 15 2009 - 11:38:22 CST)
  • John Stone (Thu Jan 15 2009 - 10:34:56 CST)
  • Axel Kohlmeyer (Wed Jan 14 2009 - 14:56:10 CST)
  • Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
• data file extensions
  • John Stone (Wed May 24 2006 - 13:04:16 CDT)
  • Kurt Smith (Wed May 24 2006 - 11:41:21 CDT)
• DCD architecture dependence
  • Jason Gans (Mon Dec 08 1997 - 08:58:10 CST)
• DCD Based on a parameter
  • Axel Kohlmeyer (Thu Aug 26 2010 - 11:11:07 CDT)
  • Ajasja LjubetiÄ� (Thu Aug 26 2010 - 10:12:42 CDT)
  • Pat Yee (Thu Aug 26 2010 - 09:01:51 CDT)
• DCD command-line options
  • John Stone (Wed Jun 28 2000 - 11:05:34 CDT)
  • Timm Essigke (Tue Jun 27 2000 - 11:55:16 CDT)
• DCD file
  • Yinglong Miao (Fri Mar 07 2008 - 14:43:37 CST)
  • Alejandro Ortega (Fri Mar 07 2008 - 12:07:23 CST)
• dcd File and bounds
  • Axel Kohlmeyer (Mon Sep 19 2016 - 09:47:15 CDT)
  • Christian Wohlschlager (Mon Sep 19 2016 - 08:00:53 CDT)
• dcd file appears to contain no timesteps
  • John Stone (Tue Jan 04 2005 - 10:18:52 CST)
  • mashaojie163 (Tue Jan 04 2005 - 02:58:38 CST)
• dcd file error
  • John Stone (Wed Aug 29 2007 - 00:08:39 CDT)
  • dimka (Tue Aug 28 2007 - 17:50:52 CDT)
• DCD file format
  • Tatyana Kuznetsova (Fri Sep 16 2005 - 05:58:44 CDT)
  • John Stone (Thu Sep 15 2005 - 11:07:50 CDT)
  • Chang, Christopher (Wed Sep 14 2005 - 14:27:47 CDT)
  • Tatyana Kuznetsova (Wed Sep 14 2005 - 09:09:06 CDT)
• DCD file format?
  • John Stone (Fri Apr 25 2003 - 17:40:04 CDT)
  • John Stone (Fri Apr 25 2003 - 16:02:00 CDT)
  • Changbong Hyeon (Fri Apr 25 2003 - 15:50:23 CDT)
• dcd files generated with catdcd
  • Giovanni (Fri Apr 30 2004 - 04:11:00 CDT)
• DCD for windows
  • John Stone (Mon Mar 12 2007 - 01:15:22 CDT)
  • John Stone (Tue Mar 06 2007 - 16:20:27 CST)
  • lily jin (Tue Mar 06 2007 - 15:25:40 CST)
• dcd format
  • Axel Kohlmeyer (Wed Oct 22 2008 - 15:59:08 CDT)
  • Leandro Martínez (Wed Oct 22 2008 - 14:41:32 CDT)
  • Axel Kohlmeyer (Wed Oct 22 2008 - 14:17:22 CDT)
  • Leandro Martínez (Wed Oct 22 2008 - 13:53:20 CDT)
  • Axel Kohlmeyer (Wed Oct 22 2008 - 12:49:56 CDT)
  • Tibbitt, Jeffrey A. (Wed Oct 22 2008 - 11:56:30 CDT)
  • JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
• dcd header information missing
  • Nichols A. Romero (Sat Mar 31 2007 - 18:11:30 CDT)
  • John Stone (Thu Mar 29 2007 - 11:03:17 CDT)
  • Nichols A. Romero (Thu Mar 29 2007 - 10:21:31 CDT)
• DCD is not detected as protein but single pdbs are?
  • Michael LeVine (Wed Jan 15 2014 - 19:45:48 CST)
• dcd large files, charmm-VMD
  • Kos (Wed May 04 2005 - 11:14:22 CDT)
  • Kos (Tue Apr 26 2005 - 14:31:51 CDT)
  • Axel Kohlmeyer (Fri Apr 22 2005 - 11:53:25 CDT)
  • John Stone (Fri Apr 22 2005 - 11:11:45 CDT)
  • Bogdan Costescu (Fri Apr 22 2005 - 11:08:13 CDT)
  • John Stone (Fri Apr 22 2005 - 11:06:09 CDT)
  • Kos (Fri Apr 22 2005 - 11:00:38 CDT)
  • Marc Q. Ma (Fri Apr 22 2005 - 10:44:25 CDT)
  • Kos (Fri Apr 22 2005 - 10:43:11 CDT)
  • John Stone (Fri Apr 22 2005 - 10:34:41 CDT)
  • John Stone (Fri Apr 22 2005 - 10:33:21 CDT)
  • John Stone (Fri Apr 22 2005 - 10:21:17 CDT)
  • Marc Q. Ma (Fri Apr 22 2005 - 09:15:17 CDT)
  • Bogdan Costescu (Fri Apr 22 2005 - 08:09:11 CDT)
  • Kos (Thu Apr 21 2005 - 20:29:21 CDT)
• DCD Question
  • McGuire, Kelly (Sun Apr 29 2018 - 20:31:18 CDT)
  • Fernando Vallejos-Burgos (Sun Apr 29 2018 - 18:37:16 CDT)
  • McGuire, Kelly (Sun Apr 29 2018 - 16:45:35 CDT)
• dcd reading error
  • John Stone (Sat Jan 03 2004 - 21:35:03 CST)
  • Bogdan Costescu (Sat Jan 03 2004 - 10:07:49 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 13:48:06 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 13:58:44 CST)
  • John Stone (Fri Jan 02 2004 - 14:34:07 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 14:27:06 CST)
  • John Stone (Fri Jan 02 2004 - 13:05:17 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 11:23:08 CST)
• dcd reading routines
  • John Stone (Fri Aug 10 2007 - 13:15:37 CDT)
  • nmichaud_at_jhu.edu (Fri Aug 10 2007 - 13:12:15 CDT)
• dcd to coor files
  • John Stone (Sat May 15 2004 - 14:08:20 CDT)
  • Amit Paliwal (Fri May 14 2004 - 15:18:26 CDT)
• DCD to XYZ conversion)
  • John Stone (Mon Oct 10 2005 - 14:53:09 CDT)
  • Kaihsu Tai (Thu Oct 06 2005 - 05:43:14 CDT)
• dcd tools
  • Chang, Christopher (Tue Sep 13 2005 - 10:20:35 CDT)
  • JC Gumbart (Mon Sep 12 2005 - 21:11:58 CDT)
  • dimka (Mon Sep 12 2005 - 20:34:20 CDT)
• DCD unit cell data
  • Axel Kohlmeyer (Thu Oct 16 2003 - 04:59:29 CDT)
  • Ioana Cozmuta (Wed Oct 15 2003 - 16:40:18 CDT)
  • Erica Smith (Wed Oct 15 2003 - 15:45:51 CDT)
• dcd with fixed atoms
  • John Stone (Thu Mar 18 2004 - 19:31:16 CST)
  • Bogdan Costescu (Wed Mar 17 2004 - 13:05:14 CST)
  • John Stone (Wed Mar 17 2004 - 10:13:00 CST)
  • Luis Gracia (Wed Mar 17 2004 - 00:39:28 CST)
• DCD write/save with a python script
  • David Huggins (Fri Nov 05 2010 - 14:58:18 CDT)
• dealing with large pdb files
  • Morteza Chehel Amirani (Tue Sep 27 2022 - 15:50:47 CDT)
• Dealing with lone pairs in fftk
  • Emma Wu (Sat Jan 30 2021 - 20:31:30 CST)
• debug
  • John Stone (Tue Jul 04 2006 - 22:43:57 CDT)
  • Vivek Sharma (Tue Jul 04 2006 - 01:07:20 CDT)
• debugging tool for atomselect
  • Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
• Decompose Transformation Matrix to Rotations and Translations along XYZ axes
  • Peter Mawanga (Fri Mar 30 2018 - 12:51:59 CDT)
  • Vermaas, Joshua (Fri Mar 23 2018 - 12:24:42 CDT)
  • Ashar Malik (Wed Mar 21 2018 - 13:29:17 CDT)
  • Peter Mawanga (Wed Mar 21 2018 - 11:12:20 CDT)
• Decrease in CC during MDFF
  • Ryan McGreevy (Fri Sep 20 2019 - 07:34:34 CDT)
  • Paula Mihaljevic-Juric (Fri Sep 20 2019 - 04:45:38 CDT)
• default colors
  • MyLinkka (Fri May 29 2009 - 05:15:26 CDT)
  • John Stone (Tue May 26 2009 - 17:03:39 CDT)
  • MyLinkka (Tue May 26 2009 - 04:57:50 CDT)
  • Axel Kohlmeyer (Mon May 25 2009 - 16:10:47 CDT)
  • John Stone (Wed May 20 2009 - 21:11:25 CDT)
  • MyLinkka (Wed May 20 2009 - 11:58:57 CDT)
  • Axel Kohlmeyer (Wed May 20 2009 - 09:38:40 CDT)
  • MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
• default directory
  • Michel Espinoza-Fonseca (Mon Dec 26 2005 - 10:25:01 CST)
  • Li Anbang (Mon Dec 26 2005 - 09:49:39 CST)
• default drawing style
  • Pawel Kedzierski (Fri Mar 18 2016 - 05:44:07 CDT)
  • Parvez Mh (Thu Mar 17 2016 - 18:02:06 CDT)
  • Ajasja LjubetiÄ� (Tue Mar 15 2016 - 08:59:58 CDT)
  • Parvez Mh (Tue Mar 15 2016 - 08:28:27 CDT)
  • Axel Kohlmeyer (Mon Mar 14 2016 - 22:04:59 CDT)
  • Parvez Mh (Mon Mar 14 2016 - 21:15:10 CDT)
  • Pawel Kedzierski (Fri Mar 11 2016 - 02:43:29 CST)
  • Parvez Mh (Fri Mar 11 2016 - 01:02:06 CST)
• Default parameters for image renderers
  • John Stone (Sat Jun 08 2002 - 22:24:24 CDT)
  • Reinhard Klement (Wed Jun 05 2002 - 04:20:15 CDT)
• Default radii and colors
  • John Stone (Fri Jul 16 2004 - 10:12:01 CDT)
  • Olaf Lenz (Fri Jul 16 2004 - 09:21:03 CDT)
• Default representation style in command line
  • Axel Kohlmeyer (Fri Apr 13 2012 - 07:21:39 CDT)
  • Nuno Sousa Cerqueira (Fri Apr 13 2012 - 07:08:18 CDT)
  • Paulo E. Abreu (Fri Apr 13 2012 - 06:10:43 CDT)
• default representations for multiple molecules
  • Bokas George (Thu May 15 2014 - 18:31:47 CDT)
  • Axel Kohlmeyer (Thu May 15 2014 - 18:06:53 CDT)
  • Bennion, Brian (Thu May 15 2014 - 17:48:54 CDT)
  • Josh Vermaas (Thu May 15 2014 - 17:49:51 CDT)
  • Bokas George (Thu May 15 2014 - 17:58:52 CDT)
  • Axel Kohlmeyer (Thu May 15 2014 - 17:30:12 CDT)
  • Bokas George (Thu May 15 2014 - 16:48:54 CDT)
• Default resource file (.vmdrc)
  • John Stone (Mon Sep 13 2004 - 15:59:23 CDT)
  • Gustavo Mercier (Mon Sep 13 2004 - 15:41:02 CDT)
• Default XML format
  • Axel Kohlmeyer (Fri Dec 07 2012 - 14:10:03 CST)
  • Tim Moore (Wed Dec 05 2012 - 09:55:15 CST)
• Define "color Element" through rgb values
  • Roger Nadler (Wed Mar 21 2012 - 12:20:50 CDT)
  • John Stone (Wed Mar 21 2012 - 11:34:24 CDT)
  • Axel Kohlmeyer (Mon Mar 19 2012 - 12:55:31 CDT)
  • Roger Nadler (Mon Mar 19 2012 - 11:47:14 CDT)
• Define bond length
  • John Stone (Mon Dec 16 2013 - 15:17:17 CST)
  • Axel Kohlmeyer (Mon Dec 16 2013 - 12:37:37 CST)
  • Lee, Sa (Mon Dec 16 2013 - 11:41:38 CST)
• define custom colours for posX gradient
  • Yogesh Sharma (Wed Aug 16 2023 - 06:30:49 CDT)
• Define the percentage of zoom
  • M K (Mon Feb 22 2016 - 17:54:14 CST)
  • John Stone (Mon Feb 22 2016 - 09:51:52 CST)
  • M K (Mon Feb 22 2016 - 05:21:36 CST)
• define water cavity using atom selection in graphical representations window
  • Axel Kohlmeyer (Tue Sep 06 2011 - 09:28:45 CDT)
  • Mark Cunningham (Tue Sep 06 2011 - 07:35:23 CDT)
  • Axel Kohlmeyer (Tue Sep 06 2011 - 05:11:00 CDT)
  • Axel Kohlmeyer (Tue Sep 06 2011 - 05:31:23 CDT)
  • Hitesh Patel (Tue Sep 06 2011 - 04:20:35 CDT)
  • Filip Persson (Tue Sep 06 2011 - 03:08:20 CDT)
• Defining a layer for a micelle
  • Vermaas, Joshua (Wed May 15 2019 - 12:12:22 CDT)
  • Nick Palmer (Wed May 15 2019 - 11:08:33 CDT)
  • Giacomo Fiorin (Wed May 15 2019 - 08:47:13 CDT)
  • Vermaas, Joshua (Wed May 15 2019 - 08:25:45 CDT)
  • Alec Zander (Wed May 15 2019 - 08:22:50 CDT)
  • Nick Palmer (Tue May 14 2019 - 21:33:36 CDT)
  • Vermaas, Joshua (Mon May 13 2019 - 13:35:32 CDT)
  • Alec Zander (Mon May 13 2019 - 12:12:42 CDT)
  • Nick Palmer (Mon May 13 2019 - 11:26:22 CDT)
• defining bonds
  • Axel Kohlmeyer (Thu Feb 21 2008 - 15:17:50 CST)
  • Thomas C. Bishop (Thu Feb 21 2008 - 14:47:15 CST)
• Defining Bonds in .xyz file format
  • Axel Kohlmeyer (Wed Feb 16 2005 - 06:09:46 CST)
  • Adrian Koh (Wed Feb 16 2005 - 02:29:09 CST)
• Defining graphics colors
  • John Stone (Mon Oct 25 2004 - 14:33:57 CDT)
  • John Stone (Thu Sep 30 2004 - 14:09:38 CDT)
  • hinsen_at_llb.saclay.cea.fr (Thu Sep 30 2004 - 03:34:26 CDT)
  • John Stone (Wed Sep 29 2004 - 16:12:24 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 16:02:31 CDT)
  • Luis Gracia (Wed Sep 29 2004 - 15:11:24 CDT)
  • John Stone (Wed Sep 29 2004 - 13:05:16 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 11:57:34 CDT)
  • John Stone (Wed Sep 29 2004 - 09:55:59 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 03:45:18 CDT)
  • John Stone (Tue Sep 28 2004 - 12:31:28 CDT)
  • hinsen_at_llb.saclay.cea.fr (Tue Sep 28 2004 - 12:15:05 CDT)
• Defining space coordinates for multiple structures
  • Joaquim Rui de Castro Rodrigues (Tue Dec 08 2015 - 14:17:13 CST)
  • Axel Kohlmeyer (Tue Dec 08 2015 - 13:45:12 CST)
  • Mariano Smoler (Tue Dec 08 2015 - 13:08:15 CST)
• defining/updating atom selection within loop
  • Chitrak Gupta (Fri May 27 2016 - 14:03:47 CDT)
  • Chitrak Gupta (Thu May 26 2016 - 15:31:33 CDT)
  • Josh Vermaas (Thu May 26 2016 - 15:35:18 CDT)
  • Chitrak Gupta (Thu May 26 2016 - 13:11:05 CDT)
  • Josh Vermaas (Thu May 26 2016 - 13:14:36 CDT)
  • Josh Vermaas (Thu May 26 2016 - 06:46:36 CDT)
  • John Stone (Wed May 25 2016 - 21:52:21 CDT)
  • Chitrak Gupta (Wed May 25 2016 - 22:05:21 CDT)
  • Chitrak Gupta (Wed May 25 2016 - 13:07:49 CDT)
• definition of single word "protein" selection
  • John Stone (Wed Feb 27 2013 - 10:28:52 CST)
  • John Stone (Wed Feb 27 2013 - 10:18:49 CST)
  • Bennion, Brian (Wed Feb 27 2013 - 10:22:55 CST)
  • Bennion, Brian (Tue Feb 26 2013 - 17:00:39 CST)
• defintion of alpha helix in vmd?
  • L. Michel Espinoza-Fonseca (Tue Dec 16 2008 - 04:41:47 CST)
  • Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
• delatom "no segment..."
  • Axel Kohlmeyer (Tue Jan 22 2008 - 05:49:32 CST)
  • Lucie Huynh (Tue Jan 22 2008 - 05:10:00 CST)
• delatom usage - no such segment?
  • Jim Phillips (Mon Dec 17 2007 - 11:50:12 CST)
  • Stephen M. Dutz (Sun Dec 09 2007 - 19:05:37 CST)
• delet a frame from dcd file
  • John Stone (Tue Feb 26 2013 - 16:47:17 CST)
  • yp sun (Sat Feb 02 2013 - 19:59:51 CST)
• delete angle type with topo tool
  • Axel Kohlmeyer (Sat May 09 2020 - 16:12:13 CDT)
  • omid gh (Sat May 09 2020 - 11:46:22 CDT)
• Delete atoms from selection
  • Axel Kohlmeyer (Mon Oct 19 2015 - 09:25:03 CDT)
  • Frank Zack (Mon Oct 19 2015 - 08:47:05 CDT)
  • Frank Zack (Mon Oct 19 2015 - 08:34:16 CDT)
• delete bad atom in psfgen
  • 程昌利 (Fri Nov 26 2010 - 05:21:01 CST)
• delete bonds in TIP3P
  • John Stone (Wed Jul 31 2002 - 08:12:28 CDT)
  • Pascal Bonnet (Wed Jul 31 2002 - 06:52:07 CDT)
• delete bonds in TIP3P water model
  • Pascal Bonnet (Sat Jul 27 2002 - 05:51:49 CDT)
• Delete frames in a script
  • Ran Friedman (Wed Jan 31 2007 - 03:33:36 CST)
  • Axel Kohlmeyer (Tue Jan 30 2007 - 11:13:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 11:02:41 CST)
  • L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 11:00:41 CST)
  • L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 10:38:22 CST)
  • Peter Freddolino (Tue Jan 30 2007 - 10:36:01 CST)
  • Ran Friedman (Tue Jan 30 2007 - 10:20:35 CST)
  • Ana Celia Araujo Vila Verde (Tue Jan 30 2007 - 10:08:50 CST)
  • Ran Friedman (Tue Jan 30 2007 - 06:12:14 CST)
• delete of some molecules
  • Axel Kohlmeyer (Sat Dec 15 2012 - 01:10:25 CST)
  • mohammad agha (Fri Dec 14 2012 - 23:42:56 CST)
• Delete overlapping residues
  • Axel Kohlmeyer (Sat Nov 24 2007 - 17:30:22 CST)
  • Francesco Pietra (Sat Nov 24 2007 - 10:50:32 CST)
• Delete redundant bonds in water molecule
  • Axel Kohlmeyer (Wed Aug 12 2015 - 18:27:41 CDT)
  • Xiaohui She (Wed Aug 12 2015 - 14:25:05 CDT)
  • Xiaohui She (Wed Aug 12 2015 - 11:32:31 CDT)
• delete residues from trajectory
  • Schreiner Eduard (Sun Mar 01 2009 - 01:14:53 CST)
  • bo baker (Sat Feb 28 2009 - 23:06:17 CST)
  • bo baker (Sat Feb 28 2009 - 03:44:06 CST)
  • bo baker (Sat Feb 28 2009 - 03:46:20 CST)
• delete segments from dcd file
  • Axel Kohlmeyer (Tue Mar 19 2013 - 02:13:32 CDT)
  • yp sun (Tue Mar 19 2013 - 01:12:22 CDT)
• delete the most recent atomselect?
  • Axel Kohlmeyer (Thu Nov 29 2012 - 15:42:33 CST)
  • Fatemesadat Emami (Thu Nov 29 2012 - 14:21:23 CST)
• Delete the residue and reassign the residue numbers
  • Karteek Kumar (Wed Dec 07 2016 - 01:23:53 CST)
• Delete Volume Maps via Script
  • John Stone (Tue Mar 06 2007 - 14:47:07 CST)
  • Bob Johnson (Wed Feb 28 2007 - 18:36:43 CST)
• Delete water 5 Angstrom away of ligand
  • konda003 . (Fri Feb 17 2017 - 08:34:24 CST)
• delete water molecules
  • Joshua Adelman (Sat Dec 18 2010 - 09:07:59 CST)
  • siddesh southekal (Sat Dec 18 2010 - 08:14:25 CST)
  • Joshua Adelman (Fri Dec 17 2010 - 10:31:41 CST)
  • Ajasja LjubetiÄ� (Fri Dec 17 2010 - 08:29:52 CST)
  • siddesh southekal (Fri Dec 17 2010 - 07:18:17 CST)
• Deleting a given bond type by topo tool
  • Axel Kohlmeyer (Wed Jul 18 2018 - 08:27:37 CDT)
  • Amir Hossein Saeedi Dehaghani (Wed Jul 18 2018 - 07:15:40 CDT)
  • Amir Hossein Saeedi Dehaghani (Tue Jul 17 2018 - 02:58:20 CDT)
• deleting at vmd console
  • John Stone (Thu Feb 15 2007 - 22:39:08 CST)
  • Dallas B. Warren (Thu Feb 15 2007 - 22:23:01 CST)
• Deleting atomselect selections for proper memory management
  • pbrenne1_at_nd.edu (Wed Jan 12 2005 - 13:10:44 CST)
  • Justin Gullingsrud (Wed Jan 12 2005 - 11:08:15 CST)
  • John Stone (Wed Jan 12 2005 - 10:22:00 CST)
  • pbrenne1_at_nd.edu (Wed Jan 12 2005 - 08:56:43 CST)
• Deleting bonds based on length
  • Arneh Babakhani (Fri Jul 27 2007 - 07:58:41 CDT)
  • Olaf Lenz (Fri Jul 27 2007 - 01:28:09 CDT)
  • Arneh Babakhani (Thu Jul 26 2007 - 23:41:11 CDT)
• Deleting frames / molecules does not free up memory!
  • Axel Kohlmeyer (Tue Oct 14 2008 - 11:13:11 CDT)
  • Benjamin Bouvier (Tue Oct 14 2008 - 11:34:44 CDT)
  • Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
• Deleting portions of isosurfaces
  • jimkress_58_at_kressworks.org (Thu May 23 2024 - 18:30:11 CDT)
  • jimkress_58_at_kressworks.org (Sat May 18 2024 - 00:12:45 CDT)
• deleting specific residues or atoms
  • Axel Kohlmeyer (Tue Feb 03 2009 - 10:55:28 CST)
  • maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
• deleting trajectory paths
  • Axel Kohlmeyer (Wed Feb 12 2014 - 20:45:14 CST)
  • Research Jubilant (Wed Feb 12 2014 - 19:31:53 CST)
• Deleting/modifying specific molecule representations
  • John Stone (Fri Jun 18 2010 - 16:20:57 CDT)
  • Ajasja LjubetiÄ� (Wed Jun 02 2010 - 11:53:00 CDT)
  • Bob Johnson (Tue Jun 01 2010 - 11:23:58 CDT)
• Delightful repl1ca w4tches at Prest1ge Repl1cas
  • Kenton Webster (Tue Aug 28 2007 - 09:33:17 CDT)
• Delightsome Cart1er w4tches at Prest1ge Repl1cas
  • Carson Cope (Fri Aug 31 2007 - 13:58:34 CDT)
• Delphi binary phi map problem
  • John Stone (Tue Dec 06 2005 - 17:08:10 CST)
  • Mengjuei Hsieh (Mon Dec 05 2005 - 19:59:12 CST)
  • John Stone (Mon Dec 05 2005 - 16:22:46 CST)
  • Mengjuei Hsieh (Fri Dec 02 2005 - 18:11:30 CST)
  • John Stone (Thu Dec 01 2005 - 17:26:20 CST)
  • Mengjuei Hsieh (Thu Dec 01 2005 - 17:10:03 CST)
• dementi: VMD freezes KDE under Linux Redhat = nVidia problem
  • Raik Grunberg (Mon Nov 05 2001 - 15:04:19 CST)
• Densities for protein and ligand
  • John Stone (Fri Feb 06 2004 - 13:56:17 CST)
  • Jim Nettles (Wed Feb 04 2004 - 11:52:31 CST)
• density
  • Swarna Patra (Sun Apr 10 2005 - 20:25:43 CDT)
• Density distribution plots
  • Axel Kohlmeyer (Fri Oct 10 2008 - 16:26:20 CDT)
  • mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
  • Axel Kohlmeyer (Thu Oct 09 2008 - 14:14:57 CDT)
  • mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
• density of system
  • Axel Kohlmeyer (Sun Jul 21 2013 - 16:08:49 CDT)
  • chin chun (Sun Jul 21 2013 - 14:46:30 CDT)
• Density of water box in solvate 1.5 plugin ~ 0.9 g/cc
  • Jim Parker (Sat Dec 13 2014 - 15:02:17 CST)
  • Jim Parker (Fri Dec 05 2014 - 15:33:06 CST)
  • Richard Wood (Fri Dec 05 2014 - 08:58:47 CST)
  • Jim Parker (Fri Dec 05 2014 - 07:29:22 CST)
• density profile
  • John Stone (Tue Mar 16 2004 - 18:49:27 CST)
  • Justin Gullingsrud (Tue Mar 16 2004 - 16:36:08 CST)
  • Ekta Khurana (Tue Mar 16 2004 - 14:57:36 CST)
• Density Profile in VMD
  • Axel Kohlmeyer (Mon Sep 05 2011 - 08:39:31 CDT)
  • oguz gurbulak (Mon Sep 05 201