VMD-L Mailing List

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About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri Jul 26 2024 - 22:16:03 CDT

• Chris Neale (Thu Jul 07 2022 - 21:25:56 CDT)
• Axel Kohlmeyer (Fri Mar 26 2021 - 14:01:39 CDT)
• John Stone (Thu Dec 31 2020 - 12:58:56 CST)
• Axel Kohlmeyer (Sat Dec 05 2020 - 17:08:10 CST)
• Abhishek TYAGI (Mon Nov 16 2020 - 01:05:52 CST)
• John Stone (Wed Oct 02 2019 - 10:08:43 CDT)
• Vermaas, Joshua (Wed Oct 02 2019 - 09:43:30 CDT)
• Giacomo Fiorin (Wed Oct 02 2019 - 09:26:45 CDT)
• Chitrak Gupta (Wed Oct 02 2019 - 09:24:07 CDT)
• Adupa Vasista (Sun Jul 14 2019 - 04:31:25 CDT)
• Jérôme Hénin (Mon Apr 29 2019 - 11:15:44 CDT)
• Vermaas, Joshua (Mon Apr 29 2019 - 11:15:05 CDT)
• Brian Radak (Mon Aug 27 2018 - 11:04:26 CDT)
• John Stone (Mon Aug 27 2018 - 10:12:44 CDT)
• Ashar Malik (Sun Jul 22 2018 - 05:48:29 CDT)
• John Stone (Fri Jun 22 2018 - 11:09:56 CDT)
• Mohammadjavad Mohammadi (Fri Jun 22 2018 - 10:26:18 CDT)
• John Stone (Thu Jun 21 2018 - 13:19:56 CDT)
• t.shivam_at_iitg.ernet.in (Wed Apr 11 2018 - 04:01:52 CDT)
• t.shivam_at_iitg.ernet.in (Mon Mar 12 2018 - 05:57:21 CDT)
• t.shivam_at_iitg.ernet.in (Fri Mar 09 2018 - 02:04:47 CST)
• Vermaas, Joshua (Mon Jan 08 2018 - 11:58:15 CST)
• Ashar Malik (Sat Jan 06 2018 - 07:04:01 CST)
• Jadzia Dax (Sat Jan 06 2018 - 06:52:54 CST)
• Tim Lo (Fri Dec 29 2017 - 20:38:47 CST)
• Suresh Ghimire (Mon Dec 25 2017 - 22:29:46 CST)
• John Stone (Mon Dec 18 2017 - 10:02:05 CST)
• McCullough, Scott (Sat Jul 22 2017 - 12:14:26 CDT)
• Tim Lo (Fri Jul 21 2017 - 20:29:08 CDT)
• Tim Lo (Fri Jul 21 2017 - 20:19:32 CDT)
• Giacomo Fiorin (Thu Jul 20 2017 - 09:40:20 CDT)
• Ashar Malik (Thu Jul 20 2017 - 03:23:39 CDT)
• Udit Aswal (Thu Apr 06 2017 - 00:54:35 CDT)
• Chitrak Gupta (Wed Apr 05 2017 - 10:43:55 CDT)
• Ajasja LjubetiÄ� (Wed Apr 05 2017 - 10:06:54 CDT)
• John Stone (Fri Dec 16 2016 - 13:56:24 CST)
• Vermaas, Joshua (Fri Dec 16 2016 - 12:47:54 CST)
• Karl Decker (Fri Dec 16 2016 - 11:27:49 CST)
• Karl Decker (Fri Dec 16 2016 - 10:36:42 CST)
• John Stone (Thu Dec 15 2016 - 11:27:01 CST)
• Bennion, Brian (Wed Jun 15 2016 - 18:11:37 CDT)
• Bennion, Brian (Wed Jun 15 2016 - 16:40:08 CDT)
• John Stone (Thu Dec 03 2015 - 12:43:51 CST)
• John Stone (Wed Aug 19 2015 - 14:39:00 CDT)
• Ozan Dernek (Wed Aug 19 2015 - 03:40:08 CDT)
• John Stone (Tue Aug 18 2015 - 10:09:40 CDT)
• Francesco Pietra (Fri May 29 2015 - 12:30:43 CDT)
• Josh Vermaas (Fri May 29 2015 - 10:58:07 CDT)
• Bennion, Brian (Fri May 29 2015 - 10:48:54 CDT)
• Maxim Belkin (Fri Mar 27 2015 - 13:26:01 CDT)
• Ajasja LjubetiÄ� (Fri Mar 27 2015 - 12:38:49 CDT)
• Maxim Belkin (Fri Mar 27 2015 - 11:55:05 CDT)
• Maxim Belkin (Fri Mar 06 2015 - 14:47:05 CST)
• M K (Wed Feb 25 2015 - 21:43:06 CST)
• Josh Vermaas (Mon Feb 23 2015 - 17:15:49 CST)
• Tristan Croll (Mon Feb 23 2015 - 17:43:10 CST)
• Martin, Erik W (Mon Feb 23 2015 - 17:38:36 CST)
• Ashar Malik (Mon Feb 23 2015 - 15:57:27 CST)
• Ashar Malik (Thu Feb 19 2015 - 17:48:43 CST)
• Tristan Croll (Wed Feb 18 2015 - 19:54:09 CST)
• Ashar Malik (Wed Feb 18 2015 - 17:08:05 CST)
• Ashar Malik (Wed Feb 18 2015 - 16:48:31 CST)
• Josh Vermaas (Tue Feb 03 2015 - 09:21:06 CST)
• MannyEful E (Tue Nov 18 2014 - 15:08:14 CST)
• Maxim Belkin (Tue Nov 18 2014 - 13:23:51 CST)
• MannyEful E (Tue Nov 18 2014 - 12:16:41 CST)
• Maxim Belkin (Tue Nov 18 2014 - 12:09:34 CST)
• MannyEful E (Tue Nov 18 2014 - 10:54:06 CST)
• MannyEful E (Tue Nov 18 2014 - 10:15:51 CST)
• Maxim Belkin (Tue Nov 18 2014 - 10:05:44 CST)
• MannyEful E (Tue Nov 18 2014 - 09:14:12 CST)
• Ajasja LjubetiÄ� (Tue Nov 18 2014 - 08:24:59 CST)
• John Stone (Fri May 16 2014 - 11:33:40 CDT)
• John Stone (Fri Dec 20 2013 - 16:01:20 CST)
• Axel Kohlmeyer (Thu Apr 25 2013 - 07:29:54 CDT)
• Jérôme Hénin (Thu Apr 25 2013 - 06:43:38 CDT)
• Axel Kohlmeyer (Thu Apr 25 2013 - 06:40:58 CDT)
• Jérôme Hénin (Thu Apr 25 2013 - 04:29:27 CDT)
• Mayne, Christopher G (Wed Apr 24 2013 - 18:02:10 CDT)
• Jeffrey Potoff (Sun Apr 21 2013 - 13:24:20 CDT)
• Pawel Kedzierski (Sun Apr 21 2013 - 09:44:28 CDT)
• Mert Gür (Tue Nov 27 2012 - 16:13:21 CST)
• Axel Kohlmeyer (Tue Nov 27 2012 - 16:06:29 CST)
• rainy908_at_yahoo.com (Thu Sep 13 2012 - 07:20:27 CDT)
• Axel Kohlmeyer (Thu Aug 02 2012 - 05:11:39 CDT)
• John Stone (Tue Jul 24 2012 - 11:56:10 CDT)
• Axel Kohlmeyer (Tue Jul 24 2012 - 11:10:42 CDT)
• John Stone (Mon Jul 23 2012 - 15:59:09 CDT)
• Axel Kohlmeyer (Mon Jul 23 2012 - 12:46:16 CDT)
• John Stone (Thu Oct 13 2011 - 10:33:26 CDT)
• denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 11:18:01 CDT)
• Axel Kohlmeyer (Mon Jan 03 2011 - 05:04:23 CST)
• Kirby Vandivort (Tue Dec 07 2010 - 11:15:01 CST)
• JC Gumbart (Thu Oct 07 2010 - 23:19:28 CDT)
• Rogan Carr (Sun Sep 12 2010 - 18:19:09 CDT)
• Edelmiro Moman (Sat Aug 21 2010 - 04:03:35 CDT)
• Ajasja LjubetiÄ� (Sat Aug 21 2010 - 02:14:19 CDT)
• John Stone (Fri Aug 20 2010 - 14:05:26 CDT)
• Joshua Adelman (Mon Mar 15 2010 - 19:56:04 CDT)
• JC Gumbart (Wed Mar 10 2010 - 23:26:30 CST)
• JC Gumbart (Wed Mar 10 2010 - 23:00:43 CST)
• Edelmiro Moman (Mon Mar 08 2010 - 14:05:52 CST)
• Olaf Lenz (Tue Jan 05 2010 - 09:12:28 CST)
• Axel Kohlmeyer (Tue Jan 05 2010 - 08:12:16 CST)
• Prathit Chatterjee (Tue Jan 05 2010 - 07:34:39 CST)
• jani sahil (Tue Jan 05 2010 - 00:49:00 CST)
• Prathit Chatterjee (Mon Jan 04 2010 - 23:22:16 CST)
• John Stone (Fri Nov 13 2009 - 08:19:04 CST)
• J. Rui Rodrigues (Fri Nov 13 2009 - 06:13:52 CST)
• John Stone (Thu Sep 10 2009 - 11:10:05 CDT)
• John Stone (Wed Sep 09 2009 - 14:14:08 CDT)
• John Stone (Wed Sep 09 2009 - 14:14:58 CDT)
• Roman Petrenko (Wed Sep 09 2009 - 14:09:35 CDT)
• Axel Kohlmeyer (Tue Apr 14 2009 - 07:25:54 CDT)
• Taufik Al-Sarraj (Mon Mar 16 2009 - 17:01:26 CDT)
• John Stone (Tue Mar 03 2009 - 15:42:19 CST)
• Irene Newhouse (Tue Mar 03 2009 - 15:37:48 CST)
• John Stone (Tue Mar 03 2009 - 14:58:22 CST)
• Irene Newhouse (Tue Mar 03 2009 - 14:55:11 CST)
• John Stone (Fri Feb 27 2009 - 18:03:40 CST)
• Axel Kohlmeyer (Fri Feb 27 2009 - 14:48:42 CST)
• Peter Freddolino (Mon Jan 26 2009 - 06:09:46 CST)
• Peter Freddolino (Tue Nov 11 2008 - 22:33:13 CST)
• Peter Freddolino (Tue Nov 11 2008 - 22:22:28 CST)
• Anirban Ghosh (Tue Nov 11 2008 - 22:27:15 CST)
• Peter Freddolino (Tue Nov 11 2008 - 22:07:42 CST)
• Anirban Ghosh (Tue Nov 11 2008 - 21:59:01 CST)
• Peter Freddolino (Tue Nov 11 2008 - 10:30:47 CST)
• Peter Freddolino (Tue Oct 21 2008 - 07:21:42 CDT)
• Axel Kohlmeyer (Sun Sep 28 2008 - 13:15:18 CDT)
• Kirby Vandivort (Thu Jul 10 2008 - 11:05:33 CDT)
• Abu Naser (Thu Jul 10 2008 - 11:23:19 CDT)
• Peter Freddolino (Mon Jan 28 2008 - 08:56:39 CST)
• Axel Kohlmeyer (Fri May 25 2007 - 11:00:48 CDT)
• Peter Freddolino (Thu May 17 2007 - 11:21:41 CDT)
• Axel Kohlmeyer (Thu May 03 2007 - 17:00:48 CDT)
• morten østergaard jensen (Tue Aug 22 2006 - 10:02:19 CDT)
• Axel Kohlmeyer (Tue Aug 22 2006 - 07:46:27 CDT)
• Peter Freddolino (Tue Aug 22 2006 - 07:36:35 CDT)
• John Stone (Tue Aug 08 2006 - 11:08:08 CDT)
• John Stone (Wed Jun 21 2006 - 13:21:42 CDT)
• snoze pa (Tue Jun 06 2006 - 17:47:34 CDT)
• John Stone (Tue Jun 06 2006 - 12:59:57 CDT)
• John Stone (Wed Mar 01 2006 - 14:56:46 CST)
• John Stone (Fri Oct 14 2005 - 14:46:53 CDT)
• Chang, Christopher (Mon Jul 18 2005 - 16:32:09 CDT)
• Blake Charlebois (Mon Jul 18 2005 - 16:26:56 CDT)
• John Stone (Tue Jun 21 2005 - 17:23:53 CDT)
• Jim Phillips (Thu Apr 07 2005 - 11:10:45 CDT)
• John Stone (Wed Apr 06 2005 - 15:05:52 CDT)
• John Stone (Mon Feb 28 2005 - 12:12:13 CST)
• John Stone (Mon Feb 28 2005 - 10:13:25 CST)
• John Stone (Mon Feb 21 2005 - 12:05:33 CST)
• John Stone (Thu Feb 17 2005 - 16:42:44 CST)
• Brian Bennion (Tue Dec 14 2004 - 12:47:07 CST)
• Charles McCallum (Wed Nov 17 2004 - 22:21:11 CST)
• John Stone (Mon Sep 20 2004 - 13:26:17 CDT)
• John Stone (Mon Jul 05 2004 - 14:31:03 CDT)
• John Stone (Mon Jul 05 2004 - 13:57:46 CDT)
• John Stone (Wed Jun 30 2004 - 17:16:57 CDT)
• John Stone (Sat Apr 24 2004 - 15:41:39 CDT)
• John Stone (Mon Apr 12 2004 - 21:59:15 CDT)
• John Stone (Wed Nov 19 2003 - 10:36:55 CST)
• John Stone (Wed Nov 19 2003 - 10:22:01 CST)
• Eugen Leitl (Wed Nov 19 2003 - 04:13:28 CST)
• John Stone (Thu Nov 06 2003 - 09:26:23 CST)
• ! Obtain degrees from Prestigious non-accredite dUniversities
  • 1(484)993-7152 Marty (Sat Jun 23 2007 - 01:45:28 CDT)
• "'Hands-on" Workshop on Computational Biophysics at Pittsburgh, PA, May 21-25, 2018
  • João Ribeiro (Fri Mar 16 2018 - 15:47:15 CDT)
• "adding polymer to CNT"
  • Giacomo Fiorin (Tue Feb 13 2018 - 09:38:45 CST)
  • Giacomo Fiorin (Fri Feb 02 2018 - 09:21:52 CST)
  • soroush ziaei (Fri Feb 02 2018 - 07:21:00 CST)
• "animate readdel"? (was: multiple automated calls to NAMD)
  • John Stone (Tue Jun 21 2005 - 17:42:11 CDT)
  • nordgren_at_sas.upenn.edu (Wed Jun 15 2005 - 08:15:10 CDT)
  • nordgren_at_sas.upenn.edu (Tue Jun 14 2005 - 03:09:48 CDT)
• "atomsel: set: bad data in 0th element" ffTK
  • Emma Wu (Thu Nov 12 2020 - 18:42:29 CST)
  • Pang, Yui Tik (Thu Nov 12 2020 - 00:07:15 CST)
  • Emma Wu (Thu Oct 22 2020 - 00:25:01 CDT)
• "can not find channel named ...
  • Axel Kohlmeyer (Wed Jul 28 2010 - 06:55:13 CDT)
  • Ajasja LjubetiÄ� (Wed Jul 28 2010 - 05:04:28 CDT)
  • Asmaa Elsheshiny (Wed Jul 28 2010 - 04:14:31 CDT)
• "cartoon" failing to show secondary structure
  • Kenley Barrett (Fri Dec 15 2006 - 11:27:30 CST)
  • John Stone (Fri Dec 15 2006 - 11:13:05 CST)
  • Kenley Barrett (Thu Dec 14 2006 - 18:31:09 CST)
• "cartoon" failing to show secondary structure--more info
  • John Stone (Fri Dec 15 2006 - 14:08:59 CST)
  • Kenley Barrett (Fri Dec 15 2006 - 12:39:54 CST)
• "color by mass" - change default colors
  • Axel Kohlmeyer (Wed Mar 25 2015 - 15:42:32 CDT)
  • Maria Sander (Wed Mar 25 2015 - 15:09:56 CDT)
• "Determine file type" list is far too long...
  • John Stone (Mon May 25 2009 - 23:09:16 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 11:40:33 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 08:52:35 CDT)
  • Rob (Sun May 24 2009 - 04:45:30 CDT)
• "Distributed Cavelib" VMD port
  • John Stone (Fri Sep 12 2003 - 11:15:00 CDT)
  • Romaric David (Fri Sep 12 2003 - 09:01:33 CDT)
• "Draw" different things in different frames
  • Axel Kohlmeyer (Sun Apr 17 2005 - 03:07:11 CDT)
  • Kiniu Wong (Sat Apr 16 2005 - 20:16:02 CDT)
• "Dynamic" gofr
  • Ondrej Kroutil (Wed Nov 12 2014 - 17:52:22 CST)
• "Error: no indices found in file." in carma.indices using NetworkView
  • Nick Bayhi (Fri Jan 07 2022 - 14:19:55 CST)
• "get {x y z}" returns single value
  • Olaf Lenz (Fri Feb 23 2007 - 11:16:30 CST)
  • Axel Kohlmeyer (Fri Feb 23 2007 - 11:10:04 CST)
  • Ivan Degtyarenko (Fri Feb 23 2007 - 10:18:16 CST)
• "graphics top line" and "render POV3"
  • Eric Smoll (Thu Oct 16 2014 - 14:07:32 CDT)
  • John Stone (Thu Oct 16 2014 - 14:11:34 CDT)
  • John Stone (Thu Oct 16 2014 - 14:00:05 CDT)
  • Eric Smoll (Thu Oct 16 2014 - 13:53:04 CDT)
  • John Stone (Thu Oct 16 2014 - 13:19:42 CDT)
  • Eric Smoll (Thu Oct 16 2014 - 13:01:57 CDT)
  • Eric Smoll (Wed Oct 15 2014 - 22:25:37 CDT)
  • John Stone (Wed Oct 15 2014 - 22:03:09 CDT)
  • Eric Smoll (Wed Oct 15 2014 - 21:46:05 CDT)
• "Hands-On" Workshop on Computational Biophysics
  • David Brandon (Tue Mar 08 2005 - 11:54:35 CST)
• "Hands-on" Workshop on Computational Biophysics at Lake Tahoe, August 4-8, 2014
  • David Brandon (Tue Apr 01 2014 - 16:23:08 CDT)
• "Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009
  • TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
• "Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA
  • David Brandon (Tue Dec 21 2010 - 14:38:16 CST)
• "Hands-On" Workshop on Computational Biophysics, November 1-5, 2010 & November 29-December 3, 2010 in Urbana, IL
  • TCBG Workshops (Thu Aug 12 2010 - 17:10:53 CDT)
• "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL
  • João Ribeiro (Mon Jul 17 2017 - 14:45:43 CDT)
  • João Ribeiro (Tue Jun 27 2017 - 13:46:57 CDT)
• "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL, September 10-14, 2018
  • João Ribeiro (Mon Jul 30 2018 - 16:15:45 CDT)
  • João Ribeiro (Wed Feb 07 2018 - 10:46:51 CST)
• "Hands-On" Workshop on QM/MM Simulations at Urbana, IL, April 5-7, 2018
  • João Ribeiro (Tue Feb 27 2018 - 08:08:16 CST)
  • João Ribeiro (Wed Feb 07 2018 - 10:44:57 CST)
• "Jump" in Energy and Volume graphs of my MD
  • John Stone (Thu Mar 31 2016 - 10:32:34 CDT)
  • Daniela Rivas (Wed Mar 30 2016 - 15:01:39 CDT)
• "Lines" representation does not show
  • John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
  • Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
  • John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
  • Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
  • John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
  • Martin Lep¹ík (Wed Sep 23 2009 - 10:49:33 CDT)
• "Lines" representation does not show:remote
  • Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
• "measure bond" vs veclength
  • John Stone (Wed Nov 26 2014 - 23:58:13 CST)
  • John Stone (Wed Nov 26 2014 - 23:45:10 CST)
  • Gianluca Interlandi (Wed Nov 26 2014 - 23:55:47 CST)
  • Gianluca Interlandi (Wed Nov 26 2014 - 18:06:03 CST)
• "measure fit" inaccuracy?
  • John Stone (Fri Jun 11 2004 - 10:16:03 CDT)
  • Justin Gullingsrud (Fri Jun 11 2004 - 10:07:54 CDT)
  • Jérôme Hénin (Fri Jun 11 2004 - 09:34:45 CDT)
  • John Stone (Fri Jun 11 2004 - 09:04:43 CDT)
  • Jérôme Hénin (Fri Jun 11 2004 - 02:48:49 CDT)
• "measure fit" problem
  • Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
  • John Stone (Wed Sep 09 2009 - 13:34:18 CDT)
• "measure symmetry" and SymmetryTools fail to find simple symmetry
  • John Stone (Fri Nov 22 2013 - 14:43:21 CST)
  • FX (Fri Nov 22 2013 - 07:13:43 CST)
  • John Stone (Wed Nov 20 2013 - 19:27:21 CST)
  • FX (Wed Nov 20 2013 - 18:00:44 CST)
  • FX (Sat Nov 16 2013 - 15:58:20 CST)
  • FX (Thu Nov 14 2013 - 10:42:58 CST)
• "mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val"
  • Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
• "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card
  • Low Soo Mei (Thu Jun 25 2009 - 00:41:15 CDT)
  • John Stone (Wed Jun 24 2009 - 22:17:52 CDT)
  • Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
• "non-grid" volumetric data
  • Axel Kohlmeyer (Sat Mar 19 2011 - 17:53:16 CDT)
  • Xiaogang Wang (Sat Mar 19 2011 - 17:15:48 CDT)
  • Axel Kohlmeyer (Sat Mar 19 2011 - 04:32:27 CDT)
  • Xiaogang Wang (Sat Mar 19 2011 - 01:23:32 CDT)
• "Not all atoms have unique coordinates"
  • Nitin Bhardwaj (Fri Jan 05 2007 - 12:31:18 CST)
• "nucleic" selection
  • Andrew Dalke (Wed Nov 12 2003 - 13:29:15 CST)
  • Vlad Cojocaru (Wed Nov 12 2003 - 10:45:47 CST)
  • Vlad Cojocaru (Wed Nov 12 2003 - 09:17:56 CST)
  • Vlad Cojocaru (Wed Nov 12 2003 - 04:55:26 CST)
• "OpenGL Display" and "VMD Main" windows; size and location on launch
  • Mayne, Christopher G (Mon Sep 29 2014 - 09:12:59 CDT)
  • Eric Smoll (Sun Sep 28 2014 - 15:27:09 CDT)
  • Eric Smoll (Sun Sep 28 2014 - 15:06:37 CDT)
  • John Stone (Sun Sep 28 2014 - 15:16:37 CDT)
• "pbcwithin" keyword
  • Axel Kohlmeyer (Thu Feb 19 2009 - 11:00:48 CST)
  • Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
• "Pick item mode" inactive in OSX bundle ?
  • John Stone (Thu Oct 03 2002 - 08:47:32 CDT)
  • Christian Simon (Thu Oct 03 2002 - 07:44:53 CDT)
• "Prepare Parameterization from CGenFF Program Output" in ffTK
  • Hazel, Justin (Mon Jul 09 2018 - 12:59:00 CDT)
  • Hazel, Justin (Mon Jul 09 2018 - 08:09:02 CDT)
  • Ushasi Pramanik 1710228 (Sun Jul 08 2018 - 23:04:00 CDT)
• "same as" failing?
  • Luis Gracia (Mon Oct 25 2004 - 14:45:54 CDT)
  • John Stone (Mon Oct 25 2004 - 13:49:14 CDT)
  • Luis Gracia (Mon Oct 25 2004 - 13:42:37 CDT)
• "Save coordinates..." silently overwrites existing files...
  • Axel Kohlmeyer (Mon Jun 15 2009 - 11:29:10 CDT)
  • Rob (Mon Jun 15 2009 - 10:25:10 CDT)
• "Selection not understood"
  • John Stone (Fri Jul 16 2004 - 13:18:59 CDT)
  • Olaf Lenz (Fri Jul 16 2004 - 09:47:04 CDT)
• "Sorry, this version VMD was compiled with Python support disabled"
  • John Stone (Wed Feb 04 2009 - 16:31:09 CST)
  • Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
• "spiral cylinders" instead of bonds when rendering with Tachyon?
  • Vermaas, Joshua (Thu Mar 23 2017 - 17:32:41 CDT)
  • Brian Radak (Thu Mar 23 2017 - 14:34:16 CDT)
• "tight" selection
  • John Stone (Tue Jun 06 2006 - 13:14:42 CDT)
• "transparent" material not working
  • John Stone (Thu May 02 2013 - 00:49:01 CDT)
  • sollebac (Wed May 01 2013 - 13:19:30 CDT)
  • John Stone (Sun Apr 28 2013 - 15:28:16 CDT)
  • Martin, Erik W (Fri Apr 26 2013 - 15:57:12 CDT)
• "truncate_trajectory" a new plugin
  • Èùìáò Åõáããåëéäçò (Fri Sep 14 2007 - 10:01:23 CDT)
• "Unable to create OpenGL window"
  • Axel Kohlmeyer (Tue Jul 18 2006 - 15:41:35 CDT)
  • César Dp (Tue Jul 18 2006 - 15:20:55 CDT)
• "user add key" feature
  • Eric Smoll (Wed Jan 20 2016 - 18:02:41 CST)
• "which files to make a spatial grid?" => Bug for list command?
  • John Stone (Tue Apr 17 2007 - 13:11:52 CDT)
  • Axel Kohlmeyer (Tue Apr 17 2007 - 07:25:11 CDT)
  • Philipp Schoen1 (Tue Apr 17 2007 - 07:03:46 CDT)
• # of waters limit
  • Justin Gullingsrud (Tue Mar 22 2005 - 18:09:26 CST)
  • dimka (Tue Mar 22 2005 - 15:19:51 CST)
• $64k/yr hpc post-doc@lanl
  • Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 19:05:34 CST)
• %-sign shortcut for mouse->force->atom not working
  • Axel Kohlmeyer (Sun May 06 2012 - 14:01:37 CDT)
  • Christopher Neale (Sun May 06 2012 - 12:21:38 CDT)
• 'Abort file I/O' key not working
  • aneesh cna (Wed Jan 02 2013 - 23:52:45 CST)
  • John Stone (Wed Jan 02 2013 - 14:37:00 CST)
  • aneesh cna (Fri Dec 28 2012 - 04:59:56 CST)
• 'gopython' Tkinter and Numeric Python error
  • John Stone (Wed Jan 30 2008 - 10:29:49 CST)
  • brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
• 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois
  • David Brandon (Thu Nov 17 2011 - 13:53:59 CST)
• 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 17-21, 2011, Bremen, Germany
  • David Brandon (Fri Jul 29 2011 - 14:15:06 CDT)
• 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 22-26, 2012 in Urbana, Illinois
  • David Brandon (Mon Jul 09 2012 - 14:32:25 CDT)
• 'Hands-on' Workshop on Computational Biophysics using VMD, NAMD, and ProDy, June 10-14, 2013 in Pittsburgh, PA
  • David Brandon (Fri Mar 08 2013 - 12:22:27 CST)
• 'percent' symbol syntax in .conf file?
  • John Stone (Tue Jan 14 2014 - 11:08:13 CST)
  • Maxim Belkin (Sat Dec 21 2013 - 18:10:36 CST)
  • Ryan Hoffman (Sat Dec 21 2013 - 09:49:40 CST)
• 'SURF' representation problem
  • John Stone (Sun Apr 08 2007 - 13:47:34 CDT)
  • dimka (Sun Apr 08 2007 - 13:22:11 CDT)
  • John Stone (Thu Mar 29 2007 - 18:26:50 CDT)
  • hl332_at_drexel.edu (Thu Mar 29 2007 - 18:09:43 CDT)
  • John Stone (Thu Mar 29 2007 - 16:10:43 CDT)
  • hl332_at_drexel.edu (Thu Mar 29 2007 - 16:04:02 CDT)
• 'topology' command crashes vmd 1.8 (LINUX)
  • John Stone (Wed Mar 05 2003 - 09:57:56 CST)
  • Patrick Ladam (Wed Mar 05 2003 - 06:22:43 CST)
• 'within' command in VMD
  • Axel Kohlmeyer (Sun May 11 2008 - 13:22:18 CDT)
  • John Stone (Sun May 11 2008 - 13:12:48 CDT)
  • Neelanjana Sengupta (Sun May 11 2008 - 12:35:35 CDT)
  • John Stone (Sun May 11 2008 - 10:54:53 CDT)
  • Axel Kohlmeyer (Sun May 11 2008 - 03:35:53 CDT)
  • Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
• 'wrap' any kind of solvent
  • Jim Phillips (Mon Dec 03 2001 - 11:14:50 CST)
  • Reuter Nathalie (Mon Dec 03 2001 - 03:20:45 CST)
• (); [Fwd: PET force field & topolgy files etc.]
  • Peter Freddolino (Thu Dec 28 2006 - 15:46:31 CST)
  • wolfinbm_at_uci.edu (Wed Dec 27 2006 - 14:23:22 CST)
• (forwarded) cylinder drawing bug in 1.7b1 on NT?
  • John Stone (Fri Jul 20 2001 - 10:20:06 CDT)
• (forwarded) Modifying a Tcl script
  • John Stone (Fri Jul 20 2001 - 10:17:04 CDT)
• (fwd) vmd 1.7b1 sequence window disappeares
  • John Stone (Mon Jul 23 2001 - 09:59:20 CDT)
• (Minnesota Supercomputing Institute Install) VMD 1.9 beta 3 posted for download...
  • nlabello (Tue Mar 08 2011 - 16:00:25 CST)
• (my) problems using molefacture dihedral
  • Peter Freddolino (Sat Apr 02 2011 - 19:05:13 CDT)
  • Francesco Pietra (Sat Apr 02 2011 - 15:36:21 CDT)
• (no subject)
  • Ananya Nayak (Tue Dec 12 2023 - 23:06:48 CST)
  • Alexei Rossokhin (Mon Jul 10 2023 - 07:26:50 CDT)
  • Ivan Franzoni (Tue Dec 20 2022 - 12:01:20 CST)
  • Edivaldo Rodrigues (Thu Jul 07 2022 - 16:12:53 CDT)
  • Huertas, Jan (Wed Jul 06 2022 - 12:04:35 CDT)
  • Kabir Biswas (Mon Apr 05 2021 - 17:45:40 CDT)
  • soumadwip ghosh (Thu Mar 25 2021 - 02:57:21 CDT)
  • soumadwip ghosh (Mon Mar 01 2021 - 03:13:50 CST)
  • K Jan (Thu Jan 07 2021 - 18:18:59 CST)
  • Ashma Khan (Thu Dec 10 2020 - 10:16:13 CST)
  • Arthur Pereira da Fonseca (Sat Dec 05 2020 - 15:31:30 CST)
  • Eashan C (Mon Nov 16 2020 - 00:32:30 CST)
  • Marcos Verissimo Alves (Mon Apr 06 2020 - 12:04:07 CDT)
  • anupama sharma (Wed Oct 02 2019 - 07:53:27 CDT)
  • Nirmitee Mulgaonkar (Sat Jul 13 2019 - 21:45:50 CDT)
  • Steven De Volder (Mon Apr 29 2019 - 08:57:40 CDT)
  • CMP (Mon Aug 27 2018 - 05:45:29 CDT)
  • abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:16:07 CDT)
  • abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:00:41 CDT)
  • Mohammadi, Mohammadjavad (Wed Jun 20 2018 - 20:12:40 CDT)
  • shyam sharma (Sun Jun 17 2018 - 03:24:35 CDT)
  • shyam sharma (Sat Jun 09 2018 - 12:14:07 CDT)
  • Ashar Malik (Tue Apr 10 2018 - 18:51:32 CDT)
  • JOHN FLANAGAN (Tue Apr 10 2018 - 16:36:48 CDT)
  • shyam sharma (Fri Mar 09 2018 - 01:15:48 CST)
  • shyam sharma (Thu Mar 08 2018 - 06:29:59 CST)
  • Suresh Ghimire (Sat Jan 06 2018 - 06:06:46 CST)
  • Suresh Ghimire (Sat Jan 06 2018 - 05:49:07 CST)
  • Suresh Ghimire (Sun Dec 31 2017 - 21:52:35 CST)
  • Suresh Ghimire (Sun Dec 17 2017 - 06:57:45 CST)
  • Siddharth Girdhar (Thu Jul 20 2017 - 01:42:01 CDT)
  • sesha surya vara prasad reddy karri (Mon Jul 17 2017 - 01:16:48 CDT)
  • sesha surya vara prasad reddy karri (Mon Jul 17 2017 - 01:10:17 CDT)
  • udit0000_at_gmail.com (Wed Apr 05 2017 - 09:36:00 CDT)
  • udit0000_at_gmail.com (Tue Apr 04 2017 - 23:33:52 CDT)
  • Udit Aswal (Fri Mar 31 2017 - 01:37:54 CDT)
  • MARIA JOSE ALIAGA GOSALVEZ (Tue Feb 14 2017 - 14:02:28 CST)
  • Karl Decker (Thu Dec 15 2016 - 11:13:26 CST)
  • Denilson F. Oliveira (Fri Dec 02 2016 - 05:51:38 CST)
  • Eric Smoll (Wed Jun 15 2016 - 15:41:27 CDT)
  • Abhijit Ghosh (Thu Dec 03 2015 - 12:35:43 CST)
  • Ozan Dernek (Tue Aug 18 2015 - 09:31:29 CDT)
  • Francesco Pietra (Fri May 29 2015 - 09:35:57 CDT)
  • Jevgenij Raskatov (Fri Mar 27 2015 - 11:43:31 CDT)
  • Jevgenij Raskatov (Fri Mar 06 2015 - 14:26:49 CST)
  • Jevgenij Raskatov (Fri Mar 06 2015 - 14:01:48 CST)
  • Jevgenij Raskatov (Wed Feb 25 2015 - 21:07:32 CST)
  • Jevgenij Raskatov (Mon Feb 23 2015 - 10:27:01 CST)
  • Jevgenij Raskatov (Thu Feb 19 2015 - 16:31:31 CST)
  • Jevgenij Raskatov (Wed Feb 18 2015 - 16:11:18 CST)
  • Jevgenij Raskatov (Sat Feb 07 2015 - 19:45:14 CST)
  • Jevgenij Raskatov (Mon Feb 02 2015 - 20:15:45 CST)
  • MannyEful E (Tue Nov 18 2014 - 07:40:29 CST)
  • Rangeen Othman (Fri Oct 24 2014 - 06:39:03 CDT)
  • Mahesh Chandrasekhar Gandikota (Wed May 14 2014 - 09:59:40 CDT)
  • Ed Robertson (Tue May 13 2014 - 04:48:54 CDT)
  • Arham Amouie (Wed Feb 12 2014 - 13:22:40 CST)
  • jeevan gc (Mon Dec 16 2013 - 17:00:04 CST)
  • Ignacio Irurzun (Wed Sep 11 2013 - 13:50:22 CDT)
  • Thomas Schmidt (Wed Jun 12 2013 - 15:37:37 CDT)
  • Lorenzo Gontrani (Wed Apr 24 2013 - 16:51:59 CDT)
  • Rob (Sun Apr 21 2013 - 06:10:17 CDT)
  • Ganesh Shahane (Sun Apr 21 2013 - 02:10:12 CDT)
  • Jessica Padden (Thu Mar 07 2013 - 13:05:49 CST)
  • Mustafa Tekpinar (Tue Nov 27 2012 - 15:00:55 CST)
  • Gert Peters (Sun Nov 18 2012 - 12:50:32 CST)
  • ragesh c (Tue Sep 18 2012 - 12:22:58 CDT)
  • rainy908_at_yahoo.com (Wed Sep 12 2012 - 23:43:19 CDT)
  • rainy908_at_yahoo.com (Wed Sep 12 2012 - 14:05:37 CDT)
  • Dudo (Wed Sep 12 2012 - 13:17:08 CDT)
  • rainy908 (Wed Sep 12 2012 - 11:55:53 CDT)
  • rainy908_at_yahoo.com (Tue Sep 11 2012 - 23:53:20 CDT)
  • Leandro Martínez (Wed Aug 22 2012 - 11:04:55 CDT)
  • Axel Kohlmeyer (Wed Aug 22 2012 - 06:17:50 CDT)
  • ragesh c (Wed Aug 22 2012 - 05:18:37 CDT)
  • DUCHER Roland (Thu Aug 02 2012 - 04:09:33 CDT)
  • Monika Madhavi (Tue Jul 24 2012 - 10:20:54 CDT)
  • Monika Madhavi (Tue Jul 24 2012 - 07:53:40 CDT)
  • Monika Madhavi (Mon Jul 23 2012 - 13:51:19 CDT)
  • Monika Madhavi (Mon Jul 23 2012 - 09:04:15 CDT)
  • Francesco Pietra (Sun Jun 10 2012 - 12:45:22 CDT)
  • Marc Charendoff (Thu May 31 2012 - 12:09:44 CDT)
  • rainy908_at_yahoo.com (Thu Apr 12 2012 - 20:54:30 CDT)
  • rainy908_at_yahoo.com (Fri Mar 23 2012 - 07:55:48 CDT)
  • rainy908_at_yahoo.com (Thu Mar 22 2012 - 17:42:38 CDT)
  • rainy908_at_yahoo.com (Thu Mar 22 2012 - 15:06:33 CDT)
  • vaneeta bala (Fri Jan 20 2012 - 01:11:06 CST)
  • hanif mahboobi (Tue Nov 22 2011 - 21:55:31 CST)
  • hanif mahboobi (Tue Nov 22 2011 - 18:19:50 CST)
  • niaz poorgholami (Fri Nov 11 2011 - 22:02:25 CST)
  • denilson_at_dqi.ufla.br (Thu Oct 06 2011 - 15:12:44 CDT)
  • denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 08:56:08 CDT)
  • Sibel Cakan (Mon Jan 03 2011 - 04:15:23 CST)
  • Diehl, Alex (NIH/NCI) [V] (Tue Dec 07 2010 - 14:06:41 CST)
  • Olimpia Popko (Tue Dec 07 2010 - 05:08:50 CST)
  • Kei Sit (Thu Oct 07 2010 - 21:03:31 CDT)
  • Axel Kohlmeyer (Sun Sep 12 2010 - 12:33:25 CDT)
  • ³Ì²ýÀû (Sun Sep 12 2010 - 11:12:01 CDT)
  • Janani.S (Fri Aug 20 2010 - 22:39:10 CDT)
  • yan zhang (Fri Aug 20 2010 - 03:54:47 CDT)
  • Irene Newhouse (Mon Mar 29 2010 - 15:12:41 CDT)
  • Roshan Tasgaonkar (Mon Mar 15 2010 - 18:07:34 CDT)
  • Roshan Tasgaonkar (Wed Mar 10 2010 - 22:55:31 CST)
  • Roshan Tasgaonkar (Mon Mar 08 2010 - 12:21:08 CST)
  • Francesco Pietra (Fri Nov 13 2009 - 03:23:21 CST)
  • Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
  • zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
  • Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
  • Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
  • Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
  • Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
  • Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
  • gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
  • Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
  • Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
  • JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
  • studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
  • Abu Naser (Thu Jul 10 2008 - 10:43:17 CDT)
  • paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
  • politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
  • mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
  • Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
  • Syed Tarique Moin (Mon Nov 26 2007 - 06:25:08 CST)
  • ZT Yew (Wed Oct 17 2007 - 18:26:24 CDT)
  • AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:06:23 CDT)
  • Lechuga, Javier (Fri May 25 2007 - 08:10:27 CDT)
  • Lechuga, Javier (Thu May 17 2007 - 09:40:07 CDT)
  • lanhua (Thu May 03 2007 - 16:30:24 CDT)
  • Stephen M. Dutz (Wed Feb 21 2007 - 15:40:45 CST)
  • Prevost Martine (Thu Jan 25 2007 - 04:41:37 CST)
  • Lechuga, Javier (Tue Aug 22 2006 - 06:12:20 CDT)
  • Hai-Jun Su (Tue Aug 08 2006 - 10:30:27 CDT)
  • Hai-Jun Su (Wed Jun 21 2006 - 12:22:29 CDT)
  • John Stone (Tue Jun 13 2006 - 11:47:30 CDT)
  • Zara Sands (Mon Jun 12 2006 - 06:36:34 CDT)
  • Sam Ansari (Tue Jun 06 2006 - 06:13:16 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:41:21 CDT)
  • Naser, Md Abu (Wed Mar 01 2006 - 14:17:10 CST)
  • Naser, Md Abu (Fri Oct 14 2005 - 14:12:44 CDT)
  • Yifat Brill (Tue Sep 27 2005 - 07:03:33 CDT)
  • Demetrios Braddock (Thu Sep 15 2005 - 18:40:47 CDT)
  • Sale, Kenneth L (Mon Jul 18 2005 - 14:48:01 CDT)
  • Simon Whitehead (Tue Jun 14 2005 - 05:34:53 CDT)
  • ËïÍ¢ (Wed Apr 06 2005 - 08:58:13 CDT)
  • matteo.pennestri_at_virgilio.it (Thu Feb 24 2005 - 09:11:19 CST)
  • matteo.pennestri_at_virgilio.it (Wed Feb 23 2005 - 04:44:47 CST)
  • James Stevens (Fri Feb 18 2005 - 14:24:19 CST)
  • Francis Reyes (Thu Feb 17 2005 - 16:33:15 CST)
  • dtp3+_at_pitt.edu (Mon Jan 03 2005 - 14:33:55 CST)
  • Eunice Ramirez Melendez (Mon Dec 13 2004 - 19:20:55 CST)
  • Paul Whitford (Wed Nov 17 2004 - 19:01:11 CST)
  • mdcooper (Mon Sep 20 2004 - 13:14:02 CDT)
  • Karunesh Arora (Thu Jul 29 2004 - 10:09:40 CDT)
  • ying xiong (Thu Jul 01 2004 - 05:57:28 CDT)
  • Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:28:42 CDT)
  • Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:08:09 CDT)
  • Heshe Peshkin (Tue Jun 29 2004 - 14:58:01 CDT)
  • Andrew Watts (Fri Apr 23 2004 - 15:26:37 CDT)
  • Yang Yang (Fri Apr 16 2004 - 21:59:41 CDT)
  • Yang Yang (Thu Apr 15 2004 - 13:19:11 CDT)
  • Ajith Gunaratne (Sun Apr 11 2004 - 23:36:05 CDT)
  • Jerry Ebalunode (Fri Mar 05 2004 - 23:09:07 CST)
  • B $B6Q (Mon Feb 16 2004 - 19:44:43 CST)
  • Ioana Cozmuta (Mon Dec 08 2003 - 18:10:49 CST)
  • Alexandre Vakhrouchev (Wed Nov 19 2003 - 02:11:14 CST)
  • Dongsheng Zhang (Tue Nov 18 2003 - 17:24:20 CST)
  • Alexandre Vakhrouchev (Thu Nov 06 2003 - 06:43:18 CST)
  • J. Rui Rodrigues (Fri Oct 17 2003 - 11:46:41 CDT)
  • Tsu-Fan Cheng (Wed Sep 17 2003 - 22:02:23 CDT)
  • Gemma Kinsella (Tue Jun 24 2003 - 10:11:04 CDT)
  • Gemma Kinsella (Tue Jun 24 2003 - 10:07:26 CDT)
  • Dongsheng Zhang (Wed May 21 2003 - 23:13:52 CDT)
  • silvya (Thu Apr 10 2003 - 17:55:11 CDT)
  • Markus Laub (Mon Mar 31 2003 - 06:31:44 CST)
  • chandran karunakaran (Thu Mar 20 2003 - 13:56:44 CST)
  • chandran karunakaran (Thu Mar 20 2003 - 13:55:13 CST)
  • César Filipe Barbosa Ribeiro (Sun Dec 02 2001 - 13:50:44 CST)
  • prachi singh (Mon Jun 05 2000 - 08:26:51 CDT)
• (Semi-)transparent windows on installation on a virtual server
  • John Stone (Thu Nov 18 2021 - 14:30:25 CST)
  • Per Larsson (Thu Nov 18 2021 - 14:21:04 CST)
  • Per Larsson (Wed Nov 10 2021 - 02:07:52 CST)
  • John Stone (Tue Nov 09 2021 - 15:36:18 CST)
  • Per Larsson (Tue Nov 09 2021 - 14:33:47 CST)
• (UNCLASSIFIED)
  • John Stone (Fri Jan 04 2008 - 13:29:49 CST)
  • Paul, Kristian (Cont, ARL/WMRD) (Fri Jan 04 2008 - 13:22:28 CST)
  • Balu, Radhakrishnan (Cont, ARL/WMRD) (Tue Nov 27 2007 - 09:18:18 CST)
• (xterm: Command not found) error
  • John Stone (Wed Apr 12 2006 - 14:29:07 CDT)
  • Jorge Hernandez Fernandez (Wed Apr 12 2006 - 14:14:58 CDT)
• -fpascal-strings flag when compiling with TDCONNEXION option
  • John Stone (Wed Jan 13 2016 - 13:29:06 CST)
  • Tristan Croll (Wed Jan 13 2016 - 13:31:47 CST)
  • Tristan Croll (Wed Jan 06 2016 - 01:58:40 CST)
  • Tristan Croll (Wed Jan 06 2016 - 01:50:30 CST)
• -restrict option in measure sasa
  • Chitrak Gupta (Fri Sep 18 2015 - 11:51:03 CDT)
  • Josh Vermaas (Thu Sep 17 2015 - 09:27:36 CDT)
  • Chitrak Gupta (Wed Sep 16 2015 - 12:42:26 CDT)
• -samples flag of measure sasa
  • John Stone (Fri Jun 18 2010 - 14:22:19 CDT)
  • Edward Lyman (Fri Jun 18 2010 - 14:15:10 CDT)
  • John Stone (Fri Jun 18 2010 - 13:10:08 CDT)
  • Edward Lyman (Thu Jun 17 2010 - 11:47:34 CDT)
• .car or .xyz output
  • John Stone (Fri Aug 05 2011 - 16:15:47 CDT)
  • winardi, erik (Wed Aug 03 2011 - 19:39:47 CDT)
• .COOR TO PDB FILE
  • Babban Mia (Sat Aug 13 2011 - 01:11:48 CDT)
• .cshrc error prevents VMD working on OSX10.3.3??? or something else???
  • John Stone (Tue Mar 23 2004 - 10:54:22 CST)
  • Dr. Daniel James White PhD (Tue Mar 23 2004 - 03:36:59 CST)
• .grd and .srf
  • vivek sharma (Mon Sep 19 2005 - 00:09:52 CDT)
  • John Stone (Fri Sep 16 2005 - 16:37:21 CDT)
  • John Stone (Fri Sep 16 2005 - 16:08:13 CDT)
  • John Stone (Fri Sep 16 2005 - 10:25:47 CDT)
  • vivek sharma (Fri Sep 16 2005 - 01:52:45 CDT)
• .gro files written with python script not displayed until strange modification
  • Vermaas, Joshua (Thu Feb 02 2017 - 16:40:25 CST)
  • Benjamin Joseph Coscia (Thu Feb 02 2017 - 14:51:44 CST)
• .gro format to .pqr format
  • Axel Kohlmeyer (Wed Jun 01 2011 - 10:52:24 CDT)
  • Mona Habibi (Wed Jun 01 2011 - 10:17:20 CDT)
• .js file format for point cloud data
  • Vermaas, Joshua (Thu May 17 2018 - 12:14:24 CDT)
  • TRINH Minh Hieu (Wed May 16 2018 - 20:35:56 CDT)
• .mdcrd to .trr conversion problem
  • Norman Geist (Wed Aug 05 2015 - 05:12:02 CDT)
  • Ajasja LjubetiÄ� (Wed Aug 05 2015 - 03:35:46 CDT)
  • Vishal Nemaysh (Wed Aug 05 2015 - 02:00:59 CDT)
• .obj Oddity
  • Darrell Kuykendall (Thu Jul 24 2014 - 13:57:16 CDT)
  • John Stone (Thu Jul 24 2014 - 10:19:22 CDT)
  • Darrell Kuykendall (Thu Jul 24 2014 - 10:00:20 CDT)
  • John Stone (Thu Jul 24 2014 - 09:37:08 CDT)
  • Darrell Kuykendall (Wed Jul 23 2014 - 15:30:19 CDT)
• .pdb file from XMD
  • John Stone (Thu Nov 02 2006 - 10:45:49 CST)
  • Alexandr Isayev (Thu Nov 02 2006 - 09:18:20 CST)
  • 04215287d_at_polyu.edu.hk (Thu Nov 02 2006 - 08:39:44 CST)
• .pdbqt file type
  • John Stone (Thu Mar 17 2011 - 09:56:08 CDT)
  • Francesco Pietra (Thu Mar 17 2011 - 02:38:19 CDT)
  • Francesco Pietra (Wed Mar 16 2011 - 12:15:51 CDT)
• .psf and .params files for IMD
  • John Stone (Thu Dec 11 2003 - 10:15:30 CST)
  • Harit Jani (Wed Dec 10 2003 - 19:08:02 CST)
• .psf for porphyrin
  • javier.vallejos_at_correo.usach.cl (Sat Oct 21 2006 - 18:11:19 CDT)
• .trr files slow to load
  • Axel Kohlmeyer (Mon May 07 2012 - 12:55:52 CDT)
  • John Stone (Mon May 07 2012 - 12:40:13 CDT)
  • patrick wintrode (Mon May 07 2012 - 12:00:19 CDT)
• .VMD state file does not load properly
  • Axel Kohlmeyer (Wed Aug 28 2013 - 11:09:28 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 11:03:01 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 07:30:07 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2013 - 07:45:20 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 04:58:32 CDT)
  • Hamed Mortazavi (Wed Aug 28 2013 - 03:43:30 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2013 - 04:52:20 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2013 - 05:05:07 CDT)
• .vmdrc
  • John Stone (Thu Jun 22 2006 - 15:17:31 CDT)
  • Brian Kidd (Wed Jun 21 2006 - 18:26:48 CDT)
• .vmdrc file
  • Monoj Mon Kalita (Mon Jun 16 2014 - 10:06:57 CDT)
• .xsf triclinic cell contents
  • Axel Kohlmeyer (Fri Nov 19 2010 - 14:49:31 CST)
  • Axel Kohlmeyer (Thu Nov 18 2010 - 15:41:28 CST)
  • Erin L. (Thu Nov 18 2010 - 14:23:06 CST)
• .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools?
  • Olaf Lenz (Thu Jul 16 2009 - 01:14:37 CDT)
  • John Stone (Wed Jul 15 2009 - 14:32:57 CDT)
  • Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
• .xyz bond
  • Axel Kohlmeyer (Mon Feb 20 2012 - 06:07:02 CST)
  • winardi, erik (Mon Feb 20 2012 - 05:15:05 CST)
• .XYZ File format
  • Ramesh K. Sistla (Mon Jun 23 2003 - 06:10:30 CDT)
  • Shantipriya Tenneti (Fri Jun 20 2003 - 18:04:42 CDT)
• .XYZ File format (DL_POLY conversion)
  • John Stone (Mon Jun 23 2003 - 09:37:34 CDT)
• .xyz file, namelist index too large error
  • John Stone (Thu Jun 07 2007 - 11:11:43 CDT)
  • Axel Kohlmeyer (Wed Jun 06 2007 - 19:00:56 CDT)
  • Erkan Tuzel (Wed Jun 06 2007 - 19:39:48 CDT)
• .xyz to .dcd using catdcd
  • John Stone (Fri Apr 20 2007 - 15:36:36 CDT)
  • John Stone (Tue Apr 17 2007 - 12:48:12 CDT)
  • Ekta Khurana (Mon Apr 16 2007 - 21:31:42 CDT)
  • Peter Freddolino (Mon Apr 16 2007 - 21:31:32 CDT)
  • Axel Kohlmeyer (Mon Apr 16 2007 - 19:51:35 CDT)
  • Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
  • Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
  • Ekta Khurana (Fri Apr 13 2007 - 16:08:51 CDT)
• /usr/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libOpenGL.so.0:
  • John Stone (Mon Jan 11 2021 - 16:42:59 CST)
  • Mi Yang (Mon Jan 04 2021 - 08:40:42 CST)
• 0ne of a kind repl1cas
  • Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
• 1-Nanotube Zigzag and 2-saving coordinates problem
  • srikasi.qut_at_gmail.com (Tue Feb 07 2023 - 00:00:41 CST)
• 1.3b2
  • robert austin (Sun Mar 21 1999 - 16:31:34 CST)
  • John Stone (Wed Mar 03 1999 - 12:23:29 CST)
  • Keith Refson (Wed Mar 03 1999 - 11:51:13 CST)
• 1.6.1 hotkey problem
  • Justin Gullingsrud (Wed May 02 2001 - 15:18:40 CDT)
  • Ben Cornett (Wed May 02 2001 - 13:05:47 CDT)
• 1.8.2beta
  • Mike McCallum (Tue Nov 25 2003 - 16:38:38 CST)
• 1.8.3
  • John Stone (Fri Jul 30 2004 - 14:33:35 CDT)
  • Daniel B. Faken (Fri Jul 30 2004 - 09:36:52 CDT)
• 1.8.5: VASP plugin not correct
  • Axel Kohlmeyer (Tue Sep 26 2006 - 09:33:45 CDT)
  • John Stone (Mon Sep 25 2006 - 21:23:42 CDT)
  • Rob (Mon Sep 25 2006 - 17:57:22 CDT)
  • Rob (Mon Sep 25 2006 - 17:55:02 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2006 - 11:44:23 CDT)
  • Rob (Mon Sep 25 2006 - 11:17:10 CDT)
  • John Stone (Mon Sep 25 2006 - 09:18:08 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2006 - 08:45:26 CDT)
  • John Stone (Mon Sep 25 2006 - 07:48:33 CDT)
  • Rob (Mon Sep 25 2006 - 07:33:43 CDT)
  • John Stone (Mon Sep 25 2006 - 06:23:48 CDT)
  • Rob (Mon Sep 25 2006 - 05:45:15 CDT)
  • John Stone (Fri Sep 22 2006 - 12:36:44 CDT)
  • Rob (Thu Sep 21 2006 - 22:15:06 CDT)
• 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL)
  • John Stone (Sun Apr 08 2007 - 11:26:33 CDT)
  • Charles Cleveland (Sun Apr 08 2007 - 08:05:00 CDT)
• 1.9.2 beta2 doesn't pop up window
  • Albert (Thu Dec 25 2014 - 05:34:25 CST)
• 1.9.3 Version
  • John Stone (Fri Aug 28 2015 - 01:23:04 CDT)
  • Christian Wohlschlager (Thu Aug 27 2015 - 08:22:51 CDT)
• 1.9.4 beta version of VMD
  • John Stone (Mon Aug 27 2018 - 11:35:47 CDT)
  • John Stone (Mon Aug 27 2018 - 09:55:17 CDT)
  • ABEL Stephane (Sun Aug 26 2018 - 10:12:23 CDT)
  • Giacomo Fiorin (Sun Aug 26 2018 - 09:32:31 CDT)
  • ABEL Stephane (Sun Aug 26 2018 - 07:43:43 CDT)
• 1.9.4_a43 mixes g++ and gcc during building and ignores LDFLAGS
  • Francisco Ramos (Thu Sep 17 2020 - 06:26:43 CDT)
• 1.9.4_a43 parallel build issues with high -j
  • John Stone (Wed Sep 16 2020 - 13:38:35 CDT)
  • Giacomo Fiorin (Wed Sep 16 2020 - 12:55:38 CDT)
  • John Stone (Wed Sep 16 2020 - 11:44:29 CDT)
  • Francisco Ramos (Wed Sep 16 2020 - 06:32:59 CDT)
• 1.9.4_a43: chemical2vmd should use /tmp instead of /usr/tmp
  • Francisco Ramos (Thu Sep 17 2020 - 06:33:30 CDT)
• 1.9.4a43-Catalina-Rev6 TkConsole Up Arrow History
  • John Stone (Mon Jul 13 2020 - 13:36:59 CDT)
  • Karl Lundquist (Mon Jul 13 2020 - 11:32:18 CDT)
  • FX (Mon Jul 13 2020 - 11:03:01 CDT)
  • Mortimer Hemmit (Mon Jul 13 2020 - 10:04:19 CDT)
  • Mortimer Hemmit (Fri Jul 03 2020 - 20:11:22 CDT)
• 1.9.4a50 - unable to open DCDs win64
  • Jason Smith (Fri Dec 18 2020 - 12:01:59 CST)
  • John Stone (Fri Dec 18 2020 - 10:22:58 CST)
  • John Stone (Fri Dec 18 2020 - 10:10:27 CST)
  • Giacomo Fiorin (Fri Dec 18 2020 - 09:51:52 CST)
  • Jérôme Hénin (Fri Dec 18 2020 - 08:45:13 CST)
  • Jason Smith (Thu Dec 17 2020 - 21:11:57 CST)
  • John Stone (Thu Dec 17 2020 - 22:49:39 CST)
  • John Stone (Thu Dec 17 2020 - 09:43:05 CST)
  • John Stone (Wed Dec 16 2020 - 20:32:27 CST)
  • Jason Smith (Wed Dec 16 2020 - 19:35:18 CST)
• 100% of CPU usage
  • John Stone (Wed Sep 07 2005 - 22:22:16 CDT)
  • John Stone (Thu Aug 11 2005 - 09:46:14 CDT)
  • griadi_at_utalca.cl (Wed Aug 10 2005 - 18:46:46 CDT)
• 15% off on two watches
  • Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
• 1999 VMD User Survey Report
  • John Stone (Mon May 24 1999 - 15:21:56 CDT)
• 1CA2 autoionization
  • Ernesto Aleksei Delgado Hurtado (Tue Feb 19 2019 - 12:17:23 CST)
  • 김민재 (Tue Feb 19 2019 - 08:44:29 CST)
• 2 Issues in VMD 1.9 beta3
  • Axel Kohlmeyer (Fri Mar 11 2011 - 08:14:02 CST)
  • hanif mahboobi (Fri Mar 11 2011 - 06:10:30 CST)
• 2 more quick questions
  • John Stone (Wed Jan 22 2003 - 18:18:30 CST)
  • phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 17:53:54 CST)
• 2 questions
  • Justin Gullingsrud (Wed Jan 09 2002 - 11:23:07 CST)
  • Sanjeev B.S. (Mon Jan 07 2002 - 02:43:18 CST)
• 2 questions about "measure sasa"
  • John Stone (Thu Mar 04 2010 - 10:50:11 CST)
  • Edward Lyman (Fri Feb 26 2010 - 13:44:59 CST)
  • Edward Lyman (Thu Feb 25 2010 - 17:05:37 CST)
  • John Stone (Thu Feb 25 2010 - 17:00:31 CST)
  • Edward Lyman (Wed Feb 17 2010 - 14:40:53 CST)
• 2-Dimensional map of a lipid molecule around the protein
  • Giacomo Fiorin (Mon Mar 26 2018 - 09:01:18 CDT)
  • Chris Neale (Thu Mar 22 2018 - 10:31:06 CDT)
  • Giacomo Fiorin (Thu Mar 22 2018 - 10:04:10 CDT)
  • Giacomo Fiorin (Wed Mar 21 2018 - 09:06:36 CDT)
  • Shashank Ranjan Srivastava (Wed Mar 21 2018 - 01:16:55 CDT)
• 20 colors for 20 amino acids!
  • John Stone (Wed Jan 22 2003 - 10:13:30 CST)
  • Dr Nick (Fri Jan 17 2003 - 11:23:28 CST)
• 2000 VMD Survey Report is up
  • John Stone (Mon Nov 13 2000 - 18:08:44 CST)
• 2006 VMD user survey in progress
  • John Stone (Wed Aug 02 2006 - 18:05:13 CDT)
• 2011 VMD User Survey results are posted...
  • John Stone (Tue Sep 13 2011 - 15:26:21 CDT)
• 2016 ISQBP Meeting: early registration / abstract submission deadline approaching
  • Vlad Cojocaru (Thu Mar 17 2016 - 03:48:59 CDT)
• 2D Contour plot
  • ban arn (Wed Apr 06 2011 - 05:06:09 CDT)
• 2D projection
  • Paul Grayson (Fri Jul 26 2002 - 10:11:58 CDT)
  • John Stone (Fri Jul 26 2002 - 09:40:38 CDT)
  • Stéphane Teletchéa (Thu Jul 25 2002 - 08:12:15 CDT)
• 2D RMSD matrix plot
  • ban arn (Fri Jul 30 2010 - 05:52:02 CDT)
• 2D rmsd matrix plot for C-alpha atoms
  • ban arn (Wed Jul 28 2010 - 07:55:33 CDT)
  • Leonardo Trabuco (Wed Jul 28 2010 - 07:50:53 CDT)
  • ban arn (Wed Jul 28 2010 - 08:01:54 CDT)
  • Leonardo Trabuco (Wed Jul 28 2010 - 07:59:08 CDT)
  • ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
  • Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
  • ban arn (Wed Jul 28 2010 - 05:50:21 CDT)
• 2D rmsd plot for C-alpha atoms
  • ban arn (Tue Jul 27 2010 - 10:55:48 CDT)
  • Leonardo Trabuco (Tue Jul 27 2010 - 11:07:03 CDT)
• 3 simple questions from a newbie
  • Justin Gullingsrud (Mon Jul 23 2001 - 12:34:16 CDT)
  • Alexey Kozlenkov (Mon Jul 23 2001 - 07:01:43 CDT)
• 3-d printing of vmd scenes
  • Hurt, Darrell (NIH/NIAID) [E] (Wed May 28 2014 - 15:04:24 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Wed May 28 2014 - 15:11:38 CDT)
  • John Stone (Wed May 28 2014 - 14:31:10 CDT)
  • Bennion, Brian (Wed May 28 2014 - 11:53:36 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Mon May 19 2014 - 09:49:56 CDT)
  • John Stone (Fri May 16 2014 - 14:11:06 CDT)
  • Bennion, Brian (Fri May 16 2014 - 12:49:05 CDT)
• 3-d visualization
  • John Stone (Wed May 28 2003 - 12:29:25 CDT)
• 32bit memory problems on Mac OS
  • John Stone (Thu Mar 28 2019 - 21:39:03 CDT)
  • Tom Bartl (Thu Mar 28 2019 - 12:11:05 CDT)
  • Tom Bartl (Mon Mar 18 2019 - 09:50:54 CDT)
  • John Stone (Sun Mar 17 2019 - 19:14:31 CDT)
  • Tom Bartl (Sat Mar 16 2019 - 14:10:48 CDT)
• 3D Connexion - Space Navigator (OSX drivers)
  • John Stone (Wed Mar 03 2010 - 10:34:03 CST)
  • Tibbitt, Jeffrey A. (Tue Mar 02 2010 - 20:24:34 CST)
• 3D density in the specific part of the simulation box
  • Axel Kohlmeyer (Tue May 01 2012 - 07:34:55 CDT)
  • fariba taghavi (Tue May 01 2012 - 00:48:35 CDT)
• 3D glasses with LCD
  • John Stone (Wed Jan 20 2010 - 10:08:24 CST)
  • Nicolas Floquet (Wed Jan 20 2010 - 06:52:16 CST)
• 3D Glasses with LCD for VMD
  • Nicolas Floquet (Wed Jan 20 2010 - 06:46:11 CST)
• 3D Graphics
  • John Stone (Wed Nov 26 2008 - 11:16:18 CST)
  • Jesper Soerensen (Tue Nov 25 2008 - 09:41:12 CST)
  • John Stone (Mon Nov 24 2008 - 10:40:21 CST)
  • Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
• 3D grid data to 2D contour?
  • John Stone (Tue Feb 20 2007 - 02:04:57 CST)
  • Ivan Degtyarenko (Thu Feb 15 2007 - 15:04:05 CST)
• 3D hardware
  • Rubner, Oliver (Wed Oct 17 2018 - 03:52:54 CDT)
• 3d pdf
  • John Stone (Tue Jul 09 2013 - 13:43:25 CDT)
  • Roberto Gaspari (Sun Jun 30 2013 - 14:47:25 CDT)
• 3D pdf problem
  • Michael K. Gilson (Mon Aug 31 2009 - 16:22:55 CDT)
  • John Stone (Mon Aug 31 2009 - 14:50:33 CDT)
  • Michael K. Gilson (Mon Aug 31 2009 - 14:36:49 CDT)
  • John Stone (Mon Aug 31 2009 - 11:51:01 CDT)
  • Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
• 3D printing
  • John Stone (Fri Dec 06 2002 - 16:17:24 CST)
• 3D projection of vmd window
  • John Stone (Mon Nov 28 2016 - 00:07:15 CST)
  • Cyril Bauvais (Thu Nov 24 2016 - 04:08:16 CST)
  • Cyril Bauvais (Thu Nov 03 2016 - 18:18:50 CDT)
• 3D projectors compatible with VMD.
  • John Stone (Wed Aug 08 2012 - 09:49:41 CDT)
  • Diego Gomes (Tue Aug 07 2012 - 20:43:23 CDT)
• 3D protein visualization
  • Ignacio Fernández Galván (Tue Nov 09 2010 - 03:05:03 CST)
  • Joseph Bylund (Mon Nov 08 2010 - 18:39:42 CST)
  • quantrum75 (Mon Nov 08 2010 - 17:31:55 CST)
  • John Stone (Mon Nov 08 2010 - 16:33:55 CST)
  • John Stone (Mon Nov 08 2010 - 16:31:45 CST)
  • Deepangi Pandit (Mon Nov 08 2010 - 15:59:08 CST)
  • Ajasja LjubetiÄ� (Mon Nov 08 2010 - 15:10:33 CST)
  • Axel Kohlmeyer (Mon Nov 08 2010 - 13:22:50 CST)
  • quantrum75 (Mon Nov 08 2010 - 12:37:50 CST)
• 3d space navigator and MacosX-vmd
  • Passerone, Daniele (Wed Jul 11 2012 - 09:41:45 CDT)
  • John Stone (Wed Jul 11 2012 - 09:22:59 CDT)
  • Passerone, Daniele (Wed Jul 11 2012 - 04:25:37 CDT)
  • John Stone (Tue Jul 10 2012 - 10:04:52 CDT)
  • Passerone, Daniele (Fri Jul 06 2012 - 07:01:20 CDT)
  • Passerone, Daniele (Mon Jul 02 2012 - 22:08:28 CDT)
• 3D Stereo : Windows 7, nVIDIA GEFORCE
  • Dipesh Bhattarai (Wed Jan 20 2010 - 16:17:33 CST)
  • Jacob Story (Wed Jan 20 2010 - 11:08:38 CST)
  • Deepangi Pandit (Wed Jan 20 2010 - 09:39:38 CST)
  • John Stone (Wed Jan 20 2010 - 10:05:14 CST)
  • John Stone (Tue Jan 19 2010 - 17:57:23 CST)
  • Deepangi Pandit (Tue Jan 19 2010 - 17:32:04 CST)
• 3D texture mapping
  • Nicola De Mitri (Thu Jan 23 2014 - 04:07:49 CST)
• 3D visualization
  • John Stone (Thu Dec 20 2001 - 14:16:33 CST)
  • John Stone (Thu Dec 20 2001 - 14:09:12 CST)
  • Stephen Koch (Thu Dec 20 2001 - 13:39:17 CST)
• 3D visualization options on Linux boxes
  • John Stone (Thu Jul 05 2012 - 11:39:49 CDT)
  • Vikas Varshney (Thu Jul 05 2012 - 09:35:17 CDT)
  • John Stone (Tue Jul 03 2012 - 12:01:10 CDT)
  • Vikas Varshney (Tue Jul 03 2012 - 12:33:27 CDT)
  • Vikas Varshney (Tue Jul 03 2012 - 11:37:48 CDT)
• 3d visualization setup
  • Anthony Cruz-Balberdy (Sat Feb 23 2019 - 08:35:24 CST)
  • Jordi Bujons (Thu Feb 21 2019 - 10:02:31 CST)
  • Anthony Cruz-Balberdy (Thu Feb 21 2019 - 08:00:02 CST)
  • Anthony Cruz-Balberdy (Sat Feb 16 2019 - 13:47:29 CST)
• 3d visualization VMD / NVIDIA / Linux
  • John Stone (Thu Dec 29 2022 - 11:51:40 CST)
  • Vlad Cojocaru (Wed Nov 02 2022 - 05:26:47 CDT)
• 3d viz?
  • Dave Schall (Mon Aug 29 2011 - 14:45:17 CDT)
  • Dave Schall (Mon Aug 29 2011 - 13:53:05 CDT)
  • Axel Kohlmeyer (Mon Aug 29 2011 - 10:37:24 CDT)
  • Dave Schall (Mon Aug 29 2011 - 09:28:34 CDT)
• 3D-Connexion Space Navigator for Macosx
  • Passerone, Daniele (Fri Jan 04 2013 - 00:47:42 CST)
  • John Stone (Sat Dec 01 2012 - 23:50:34 CST)
  • Passerone, Daniele (Wed Nov 21 2012 - 04:35:43 CST)
• 3D/stereo hardware recommendations wanted!!!
  • John Stone (Fri Jan 14 2005 - 11:29:36 CST)
  • Mads Nørregaard-Madsen (Fri Jan 14 2005 - 05:09:54 CST)
  • Bogdan Costescu (Fri Jan 14 2005 - 04:51:45 CST)
  • Thomas Hedegaard Pedersen (Fri Jan 14 2005 - 02:41:13 CST)
• 3dconnexion spacemouse pro and vmd on fedora 21
  • John Stone (Thu Aug 06 2015 - 13:15:23 CDT)
  • Bennion, Brian (Thu Aug 06 2015 - 12:15:13 CDT)
  • Bennion, Brian (Thu Aug 06 2015 - 11:36:17 CDT)
  • John Stone (Thu Aug 06 2015 - 11:44:00 CDT)
  • John Stone (Thu Aug 06 2015 - 00:32:59 CDT)
  • Bennion, Brian (Wed Aug 05 2015 - 15:02:54 CDT)
• 3Dconnexion SpaceNavigator (OS X)
  • John Stone (Fri May 27 2011 - 14:54:34 CDT)
  • Hans Martin Senn (Wed May 25 2011 - 11:37:51 CDT)
• 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X
  • John Stone (Wed Jul 30 2008 - 10:38:41 CDT)
  • Benjamin Bouvier (Wed Jul 30 2008 - 10:36:17 CDT)
  • John Stone (Wed Jul 30 2008 - 10:25:53 CDT)
  • Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
• 3Dconnexion SpaceTraveler works
  • Eugen Leitl (Fri Jul 14 2006 - 03:43:21 CDT)
  • John Stone (Thu Jul 06 2006 - 13:21:22 CDT)
  • Eugen Leitl (Wed Jul 05 2006 - 08:21:00 CDT)
  • Eugen Leitl (Wed Jul 05 2006 - 07:54:46 CDT)
• 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st)
  • 3D SIG (Fri Apr 15 2011 - 14:38:03 CDT)
• 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st).
  • 3D SIG (Wed Mar 23 2011 - 06:15:19 CDT)
• 3rd party tools- vmd
  • Axel Kohlmeyer (Tue Nov 06 2012 - 13:42:13 CST)
  • Ban Arn (Tue Nov 06 2012 - 11:46:59 CST)
• 4x4 trafo matrices to get "homo-two-protein-complex"
  • Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
  • Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
  • Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
  • Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
  • Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
  • Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
  • Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
• 64 bit NAMD on AIX and CatDCD
  • John Stone (Mon Jan 23 2006 - 13:21:14 CST)
  • Joshua D. Moore (Sat Jan 21 2006 - 13:22:11 CST)
• 64 bit windows VMD
  • John Stone (Tue Jul 28 2015 - 11:36:22 CDT)
  • Ajasja LjubetiÄ� (Mon Jul 27 2015 - 15:22:07 CDT)
  • Hart, David Blaine (Mon Jul 27 2015 - 11:16:11 CDT)
  • Sam Wallace (Mon Jul 27 2015 - 03:06:40 CDT)
• 6DOF controllers
  • John Stone (Sat Jan 08 2000 - 21:23:23 CST)
  • Eugene Leitl (Sat Jan 08 2000 - 20:42:01 CST)
• 780Ti and NAMD2
  • David Hardy (Wed Aug 30 2017 - 10:21:40 CDT)
  • jrhau lung (Wed Aug 30 2017 - 06:14:54 CDT)
• 7th Industrial Fluid Properties Simulation Challenge
  • Joshua D. Moore (Wed May 23 2012 - 11:22:23 CDT)
• 99 Toyotas as low as 2% over invoice
  • accutone_at_atlsky.com (Sat Sep 05 1998 - 19:10:53 CDT)
• : about complexing protein and ligand!
  • Axel Kohlmeyer (Mon Jan 12 2009 - 08:54:21 CST)
  • Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
• << Centering/aligning several molecules >>
  • I. Camps (Fri Dec 30 2022 - 14:43:28 CST)
  • Vermaas, Josh (Fri Dec 30 2022 - 11:00:34 CST)
  • Giacomo Fiorin (Thu Dec 29 2022 - 14:24:54 CST)
  • John Stone (Thu Dec 29 2022 - 13:54:56 CST)
  • I. Camps (Thu Dec 29 2022 - 13:26:04 CST)
• << Different values of RMSD >>
  • I. Camps (Sat Aug 31 2019 - 21:32:53 CDT)
  • Vermaas, Joshua (Thu Aug 29 2019 - 20:25:40 CDT)
  • Vermaas, Joshua (Thu Aug 29 2019 - 17:39:58 CDT)
  • I. Camps (Thu Aug 29 2019 - 12:39:09 CDT)
• << Hbonds distances >>
  • Diego Gomes (Mon Jan 08 2024 - 11:00:08 CST)
  • I. Camps (Fri Jan 05 2024 - 14:06:06 CST)
• << Loading trajectory file in Windows fails >>
  • I. Camps (Thu Aug 29 2019 - 12:40:22 CDT)
  • Vermaas, Joshua (Wed Aug 28 2019 - 10:09:27 CDT)
  • Axel Kohlmeyer (Wed Aug 28 2019 - 09:08:53 CDT)
  • I. Camps (Wed Aug 28 2019 - 07:39:34 CDT)
• << memory issue? >>
  • Axel Kohlmeyer (Wed Mar 30 2022 - 21:05:09 CDT)
  • I. Camps (Wed Mar 30 2022 - 20:04:47 CDT)
• << multiple atom selection >>
  • I. Camps (Sat Jul 23 2022 - 16:48:32 CDT)
  • Axel Kohlmeyer (Sat Jul 23 2022 - 13:02:47 CDT)
  • Axel Kohlmeyer (Sat Jul 23 2022 - 13:03:27 CDT)
  • Zachary SMITH (Sat Jul 23 2022 - 12:20:13 CDT)
  • Ashar Malik (Sat Jul 23 2022 - 12:14:54 CDT)
  • I. Camps (Sat Jul 23 2022 - 11:13:55 CDT)
• << thresholds for drawing bonds >>
  • Axel Kohlmeyer (Tue Dec 27 2022 - 16:12:10 CST)
  • I. Camps (Tue Dec 27 2022 - 14:54:19 CST)
  • John Stone (Tue Dec 27 2022 - 10:10:24 CST)
  • I. Camps (Wed Dec 21 2022 - 13:49:48 CST)
• <<cionize on macOS error>>
  • Ropón-Palacios G. (Mon Sep 25 2023 - 17:23:40 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 17:32:31 CDT)
  • Hasdemir, Hale Siir (Mon Sep 25 2023 - 17:20:19 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2023 - 17:14:53 CDT)
  • Diego Gomes (Mon Sep 25 2023 - 17:13:46 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 16:24:51 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2023 - 16:04:06 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 15:59:39 CDT)
  • Axel Kohlmeyer (Mon Sep 25 2023 - 15:49:35 CDT)
  • Ropón-Palacios G. (Mon Sep 25 2023 - 14:52:05 CDT)
  • Castro Martinez, Camila (Mon Sep 25 2023 - 01:49:52 CDT)
  • ROPÓN-PALACIOS G. G. (Sun Sep 24 2023 - 06:57:26 CDT)
• <<measure command>>
  • ROPÓN-PALACIOS G. G. (Sat Sep 23 2023 - 09:16:15 CDT)
  • Diego Gomes (Fri Sep 22 2023 - 11:07:32 CDT)
  • Ropón-Palacios G. (Thu Sep 21 2023 - 16:21:11 CDT)
• <please insert a decent subject here next time, thanks>
  • Axel Kohlmeyer (Mon Mar 09 2009 - 12:08:49 CDT)
• ??startup.command?? can??t be opened because CoreServicesUIAgent is not allowed to open documents in Terminal.
  • Maxim Belkin (Mon Apr 06 2015 - 13:29:18 CDT)
  • 苗家远 (Wed Apr 01 2015 - 15:13:24 CDT)
  • John Stone (Mon Mar 30 2015 - 17:08:23 CDT)
• ?Filesize limit exceeded (core dumped)? with VMD on Linux
  • John Stone (Thu May 26 2022 - 11:47:37 CDT)
• [AMBER] Viewing with VMD bonds set by the "bond" command
  • Francesco Pietra (Fri Mar 09 2012 - 01:39:17 CST)
  • Francesco Pietra (Thu Mar 08 2012 - 12:27:58 CST)
  • Francesco Pietra (Thu Mar 08 2012 - 03:48:48 CST)
• [apbs-users] Missing library on mac
  • Fateme Sadat Emami (Wed May 07 2014 - 14:45:22 CDT)
• [bigdcd.tcl] How to stream output to file
  • Justin Gullingsrud (Thu Mar 03 2005 - 10:33:45 CST)
  • Sascha Tayefeh (Thu Mar 03 2005 - 04:20:38 CST)
• [carlos.simmerling@gmail.com: ACS awards application announcements]
  • John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
• [carlos.simmerling@gmail.com: ACS awards]
  • John Stone (Mon Mar 03 2008 - 20:11:56 CST)
• [Contribute] transparent MacOS X icon for VMD
  • John Stone (Mon Aug 19 2002 - 11:47:21 CDT)
  • MengJuei Hsieh (Fri Aug 16 2002 - 20:54:41 CDT)
  • John Stone (Thu Aug 15 2002 - 17:08:44 CDT)
  • MengJuei Hsieh (Wed Aug 14 2002 - 19:15:49 CDT)
• [EXT] placing graphics objects at fixed locations on the display
  • Goedde, Chris (Tue Oct 06 2020 - 15:32:23 CDT)
• [EXT] Question for Installing Plugin for VMD on Mac
  • Goedde, Chris (Mon Oct 07 2019 - 10:07:46 CDT)
• [EXT] VMD for Mac stopped working after updating to Catalina
  • fabio trovato (Thu Nov 07 2019 - 03:07:59 CST)
  • John Stone (Wed Nov 06 2019 - 23:42:17 CST)
  • Goedde, Chris (Mon Nov 04 2019 - 09:50:29 CST)
• [Fwd: pdb from trajectory] some clarification
  • Peter Freddolino (Wed Jan 24 2007 - 07:55:05 CST)
  • _at_huji.ac.il (Wed Jan 24 2007 - 04:37:40 CST)
  • John Stone (Tue Jan 23 2007 - 13:45:07 CST)
  • Peter Freddolino (Tue Jan 23 2007 - 10:10:59 CST)
  • _at_huji.ac.il (Tue Jan 23 2007 - 09:41:49 CST)
• [Fwd: problems with manipulating control switches on VMS main menu]
  • Axel Kohlmeyer (Fri Oct 31 2008 - 18:05:46 CDT)
  • Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
• [Help] cross-sections
  • Axel Kohlmeyer (Sun Apr 04 2010 - 05:27:44 CDT)
  • Jervis Chu (Sat Apr 03 2010 - 23:18:54 CDT)
• [jfavre@cscs.ch: SC'15 Scientific Visualization Showcase]
  • John Stone (Mon Jul 20 2015 - 15:35:53 CDT)
• [jrodgers78@gmail.com: outputing secondary structure from timeline]
  • Barry Isralewitz (Mon Jan 23 2006 - 15:16:42 CST)
• [lammps-users] Initial configurations / topology for LAMMPS
  • Anna (Thu Jul 14 2011 - 17:17:56 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2011 - 15:29:08 CDT)
• [lammps-users] LAMMPS to VMD: lmp2vmd tool
  • Axel Kohlmeyer (Sat Jun 13 2009 - 17:00:27 CDT)
  • Chetan Mahajan (Wed Jun 10 2009 - 10:00:30 CDT)
  • Axel Kohlmeyer (Wed Jun 10 2009 - 08:36:44 CDT)
  • Chetan Mahajan (Tue Jun 09 2009 - 13:08:16 CDT)
  • Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
• [lammps-users] MDAnalysis (slightly OT)
  • Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
• [lammps-users] NPT/ Missing bonds / atoms & atom overlap
  • Georgia Tsagkaropoulou (Wed Dec 09 2015 - 11:19:25 CST)
• [lammps-users] Regarding rdf from VMD extensions+lammps
  • Axel Kohlmeyer (Tue Apr 29 2014 - 13:37:43 CDT)
• [lammps-users] using topotools to view lammps output
  • Axel Kohlmeyer (Wed Jun 01 2011 - 08:48:04 CDT)
• [linux-elitists] ATI Radeon support (fwd from deejoe@raccoon.com)
  • Eugen Leitl (Tue Dec 14 2004 - 03:33:02 CST)
• [MMTK] Visualization to an image file (fwd from hinsen@cnrs-orleans.fr)
  • Eugen Leitl (Mon Jul 12 2004 - 08:36:58 CDT)
• [OT] pdb files with lots of residues
  • Justin Gullingsrud (Thu Jan 30 2003 - 09:45:07 CST)
  • Jim Phillips (Thu Jan 30 2003 - 09:21:37 CST)
  • gianluca santarossa (Thu Jan 30 2003 - 09:10:23 CST)
• [patch] Autodetection of formats supported by openbabel
  • FX (Mon Nov 24 2008 - 17:05:26 CST)
  • John Stone (Mon Nov 24 2008 - 10:22:47 CST)
  • FX (Thu Nov 20 2008 - 05:07:17 CST)
• [patch] potential CUDA acceleration - load-balancing on different CUDA devices
  • John Stone (Wed Jan 28 2009 - 08:21:58 CST)
  • Martin Aumüller (Wed Jan 28 2009 - 06:35:19 CST)
• [phenixbb] secondary structure presentation in VMD
  • CPMAS Chen (Tue Jan 23 2018 - 11:38:16 CST)
  • CPMAS Chen (Tue Jan 23 2018 - 11:01:48 CST)
  • John Stone (Tue Jan 23 2018 - 11:12:12 CST)
  • John Stone (Mon Jan 22 2018 - 16:03:48 CST)
  • CPMAS Chen (Mon Jan 22 2018 - 15:58:44 CST)
• [philippebopp@yahoo.com: PME calculations]
  • Jim Phillips (Fri Nov 08 2013 - 12:47:05 CST)
• [PyMOL] 3D on linux (fwd)
  • Eugen Leitl (Thu Jan 30 2003 - 09:40:15 CST)
• [PyMOL] enable direct rendering DRI on fedora core 2
  • Jack Howarth (Fri Jun 11 2004 - 07:22:35 CDT)
• [PyMOL] NVidia [7174] Drivers & Nuccyl
  • Sabuj Pattanayek (Fri Apr 01 2005 - 14:24:34 CST)
• [PyMOL] nVidia Driver 7664 for Linux
  • John Stone (Thu Jun 02 2005 - 15:12:06 CDT)
  • sabuj pattanayek (Thu Jun 02 2005 - 13:57:54 CDT)
• [PyMOL] pymol crashes with new [7167] nvidia driver
  • John Stone (Tue Mar 29 2005 - 12:52:55 CST)
  • Sabuj Pattanayek (Tue Mar 29 2005 - 11:55:03 CST)
  • John Stone (Tue Mar 29 2005 - 11:31:14 CST)
  • Sabuj Pattanayek (Tue Mar 29 2005 - 11:11:54 CST)
  • John Stone (Mon Mar 28 2005 - 09:10:09 CST)
  • Sabuj Pattanayek (Sat Mar 26 2005 - 16:45:31 CST)
  • Sabuj Pattanayek (Sat Mar 26 2005 - 16:42:42 CST)
• [request] Best practices for rendering frames and making movies
  • John Stone (Wed Feb 22 2012 - 11:12:27 CST)
  • Axel Kohlmeyer (Tue Feb 21 2012 - 18:29:19 CST)
  • Diego Enry Barreto Gomes (Tue Feb 21 2012 - 17:22:56 CST)
• [selection problem] When I choose all not 'solvent', one residue is gone?v1.8.3
  • Stanley Lan (Fri Oct 28 2005 - 11:47:06 CDT)
• [Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides]
  • Jim Phillips (Wed Feb 15 2012 - 10:24:11 CST)
• [Tech] Colors in VMD
  • Andrew Dalke (Fri Jan 24 1997 - 15:24:38 CST)
  • Chris Upton (Fri Jan 24 1997 - 11:55:13 CST)
  • Andrew Dalke (Fri Jan 24 1997 - 11:44:45 CST)
• [Tech] Customizing VMD: hot keys and popup menus
  • Andrew Dalke (Fri Jan 31 1997 - 12:10:02 CST)
• [topotool] writelammpsdata : custom order for atom types
  • Yann Claveau (Wed May 12 2021 - 08:29:46 CDT)
  • Axel Kohlmeyer (Wed May 12 2021 - 08:20:02 CDT)
  • Yann Claveau (Wed May 12 2021 - 08:12:59 CDT)
  • Axel Kohlmeyer (Wed May 12 2021 - 04:30:22 CDT)
  • Yann Claveau (Wed May 12 2021 - 04:37:01 CDT)
  • Yann Claveau (Wed May 12 2021 - 03:37:29 CDT)
• [topotools]writelammpsdata
  • John Stone (Fri Jul 02 2021 - 11:33:19 CDT)
  • Axel Kohlmeyer (Fri Jun 18 2021 - 08:52:30 CDT)
  • Axel Kohlmeyer (Fri Jun 18 2021 - 07:58:55 CDT)
  • 冯艺漩 (Fri Jun 18 2021 - 07:04:46 CDT)
• [VMD TECH] Tracing VMD Variables (Part II)
  • Alexander Balaeff (Thu May 01 1997 - 16:29:52 CDT)
  • Jeff Ulrich (Wed Apr 30 1997 - 17:42:04 CDT)
• [vmd-l] Graduate assistanship in Bioinformatics at NCSA
  • Gloria Rendon (Wed Mar 28 2007 - 17:45:25 CDT)
• [VMD-NAMD] Question about Dipole of DNA / Dipole Moment Watcher Plugin
  • The Cromicus Productions (Sun Mar 25 2018 - 20:31:45 CDT)
  • Brian Radak (Fri Mar 23 2018 - 10:59:05 CDT)
  • The Cromicus Productions (Thu Mar 22 2018 - 18:17:30 CDT)
• [VMD] Cannot find "cionize" plugin
  • The Cromicus Productions (Mon Aug 13 2018 - 00:03:23 CDT)
  • JC Gumbart (Sun Aug 12 2018 - 10:44:49 CDT)
  • The Cromicus Productions (Fri Aug 10 2018 - 02:35:45 CDT)
  • The Cromicus Productions (Fri Aug 10 2018 - 02:07:11 CDT)
• [vmd] K3b bug?
  • christopher (Sat Jan 27 2007 - 09:15:58 CST)
  • Peter Freddolino (Sat Jan 27 2007 - 08:26:32 CST)
  • Peter Freddolino (Sat Jan 27 2007 - 07:59:55 CST)
  • christopher (Sat Jan 27 2007 - 07:12:57 CST)
• [vmd] max number of molecules on mac
  • John Stone (Tue Jan 17 2006 - 10:06:26 CST)
  • James Rustad (Tue Jan 17 2006 - 09:55:22 CST)
  • Axel Kohlmeyer (Tue Jan 17 2006 - 06:32:23 CST)
  • James Rustad (Mon Jan 16 2006 - 22:27:30 CST)
• [VMD] Measure distance between two selections
  • John Stone (Wed May 31 2017 - 16:34:50 CDT)
  • The Cromicus Productions (Sat May 13 2017 - 17:33:14 CDT)
• [VMD] Obtaining phonon spectrum of DNA
  • The Cromicus Productions (Sat Dec 17 2016 - 00:00:44 CST)
• [VMD] Power-spectrum calculation
  • The Cromicus Productions (Tue Dec 27 2016 - 03:12:38 CST)
• [vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle]
  • Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
• [VMDTECH] Drawing Methods, Part I
  • Andrew Dalke (Fri Mar 07 1997 - 16:22:57 CST)
• [VMDTECH] Drawing Methods, Part II
  • Andrew Dalke (Fri Mar 14 1997 - 16:40:47 CST)
• [VMDTECH] Hingefind
  • Willy Wriggers (Wed Jun 11 1997 - 16:57:22 CDT)
  • Sergei Izrailev (Wed Jun 11 1997 - 16:45:17 CDT)
• [VMDTECH] Making Movies
  • Andrew Dalke (Fri Feb 14 1997 - 12:56:27 CST)
• [VMDTECH] Morphing
  • Andrew Dalke (Fri Mar 28 1997 - 12:14:17 CST)
• [VMDTECH] RMSD and best-fit alignments
  • Andrew Dalke (Fri Feb 07 1997 - 14:37:24 CST)
• [VMDTECH] Schedule Change
  • Andrew Dalke (Fri Apr 18 1997 - 18:07:35 CDT)
• [VMDTECH] Secondary Structure
  • Andrew Dalke (Fri Feb 28 1997 - 16:38:21 CST)
• [VMDTECH] Small things
  • Andrew Dalke (Fri Feb 21 1997 - 13:02:34 CST)
• [VMDTECH] Smoothing Animations
  • Andrew Dalke (Sun Apr 13 1997 - 01:28:43 CDT)
• [VMDTECH] Tracing Atom Picks
  • Andrew Dalke (Fri Apr 04 1997 - 18:27:57 CST)
• [VMDTECH] VMD 1.2b1 is now available
  • Andrew Dalke (Tue Mar 25 1997 - 03:03:32 CST)
  • Andrew Dalke (Tue Mar 25 1997 - 02:09:57 CST)
• [VMDTECH] Working with colors
  • Sergei Izrailev (Tue Jul 01 1997 - 20:21:43 CDT)
• a air box
  • Peter Freddolino (Thu May 10 2007 - 10:25:46 CDT)
  • Axel Kohlmeyer (Thu May 10 2007 - 09:22:45 CDT)
  • SMAHANE CHALABI (Thu May 10 2007 - 08:38:15 CDT)
• a basic question on binding energy
  • Ф¸»¹ó (Mon Sep 03 2012 - 08:51:01 CDT)
• A box of amino acids
  • Richard Wood (Mon Nov 24 2014 - 12:48:33 CST)
  • Ajasja LjubetiÄ� (Mon Nov 24 2014 - 10:54:04 CST)
  • Axel Kohlmeyer (Mon Nov 24 2014 - 10:40:31 CST)
  • Kevin C Chan (Mon Nov 24 2014 - 10:08:52 CST)
• A bug about "trans" command
  • John Stone (Wed Sep 21 2011 - 11:06:17 CDT)
  • KM Tu (Fri Sep 16 2011 - 10:33:49 CDT)
• a common list problem
  • John Stone (Fri May 02 2008 - 10:39:04 CDT)
  • Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
• a detail about PSFGENv1.4
  • Jim Phillips (Wed Feb 02 2011 - 22:45:23 CST)
  • Seth Tanner (Wed Feb 02 2011 - 12:49:37 CST)
• a display problem
  • John Stone (Thu Mar 09 2006 - 10:33:27 CST)
  • lily jin (Thu Mar 09 2006 - 10:22:57 CST)
• A error of " transforming dcd into pdb "
  • Axel Kohlmeyer (Tue Aug 29 2006 - 11:55:49 CDT)
  • John Stone (Tue Aug 29 2006 - 11:51:00 CDT)
  • wang (Tue Aug 29 2006 - 03:02:10 CDT)
  • Leonardo Trabuco (Tue Aug 29 2006 - 10:48:36 CDT)
  • Eduard Schreiner (Tue Aug 29 2006 - 04:46:24 CDT)
  • dimka (Tue Aug 29 2006 - 02:41:47 CDT)
  • dimka (Tue Aug 29 2006 - 02:37:14 CDT)
  • Leonardo Trabuco (Tue Aug 29 2006 - 02:02:52 CDT)
  • wang (Tue Aug 29 2006 - 01:27:52 CDT)
• a few questions about VMD
  • John Stone (Fri Sep 22 2000 - 16:34:17 CDT)
  • Eric Hu (Fri Sep 22 2000 - 16:31:06 CDT)
  • John Stone (Wed Sep 20 2000 - 19:55:26 CDT)
  • Eric Hu (Wed Sep 20 2000 - 17:49:07 CDT)
• a few questions on uninstall, labels, rasmol,seq window
  • John Stone (Fri Apr 11 2003 - 14:49:49 CDT)
  • Y U Sasidhar (Fri Apr 11 2003 - 00:07:51 CDT)
• a file for commands of console
  • Nima Nouri (Sat Jul 30 2011 - 11:56:58 CDT)
  • Ajasja LjubetiÄ� (Sat Jul 30 2011 - 09:40:23 CDT)
  • JhonY. I. (Sat Jul 30 2011 - 08:55:14 CDT)
• A fill for "bodies" build out of surfacs
  • John Stone (Mon May 07 2018 - 16:49:44 CDT)
  • John Stone (Mon May 07 2018 - 14:40:52 CDT)
  • Daniel Möller (Mon May 07 2018 - 05:12:40 CDT)
• a gas box
  • Axel Kohlmeyer (Tue May 15 2007 - 08:22:16 CDT)
  • SMAHANE CHALABI (Tue May 15 2007 - 06:10:05 CDT)
• a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64)
  • Andrew Jewett (Mon Jan 10 2011 - 22:27:39 CST)
  • Andrew Jewett (Mon Jan 10 2011 - 19:56:23 CST)
• a name quesiton
  • lily jin (Fri Apr 07 2006 - 11:19:41 CDT)
• A nanosphere with mass
  • Shubham Mishra (Mon Feb 01 2016 - 12:19:37 CST)
  • Ashar Malik (Mon Feb 01 2016 - 05:30:30 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 04:32:50 CST)
  • Ashar Malik (Mon Feb 01 2016 - 03:51:35 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 02:24:21 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 02:25:09 CST)
  • Ana Celia Vila Verde (Mon Feb 01 2016 - 01:55:14 CST)
  • Axel Kohlmeyer (Mon Feb 01 2016 - 01:47:00 CST)
  • Shubham Mishra (Mon Feb 01 2016 - 01:29:43 CST)
• A patch for OFF import and a question about representation of surfaces
  • John Stone (Tue Jul 12 2011 - 13:22:54 CDT)
  • FX (Sat Jul 02 2011 - 05:08:08 CDT)
• A problem about atomselect command in a script
  • Axel Kohlmeyer (Tue Dec 04 2012 - 02:32:54 CST)
  • Z.Y.Qiu (Mon Dec 03 2012 - 22:53:30 CST)
• a problem about multiplot
  • Jérôme Hénin (Thu Jan 27 2011 - 04:04:55 CST)
  • superdirac (Wed Jan 26 2011 - 21:43:38 CST)
  • superdirac (Wed Jan 26 2011 - 21:09:38 CST)
  • John Stone (Wed Jan 26 2011 - 20:19:47 CST)
  • superdirac (Wed Jan 26 2011 - 20:01:18 CST)
• a problem in visualizing dump files with vmd
  • Axel Kohlmeyer (Tue Feb 23 2010 - 05:44:27 CST)
  • Robabeh Moosavi (Tue Feb 23 2010 - 05:43:46 CST)
• A problem on PBC
  • Axel Kohlmeyer (Thu Jul 16 2009 - 11:56:57 CDT)
  • yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
• a problem on Red Hat Enterprise Linux 5
  • Seungho Choe (Mon Jan 05 2009 - 11:25:16 CST)
  • John Stone (Mon Jan 05 2009 - 16:13:40 CST)
  • Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
• A problem on SASA measure
  • John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
  • yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
• a problem using python in vmd
  • Kristina Woods (Thu Aug 25 2005 - 10:56:15 CDT)
• a problem with installation (to generate the Makefile )
  • Axel Kohlmeyer (Tue Aug 07 2007 - 08:15:36 CDT)
  • John Stone (Mon Aug 06 2007 - 23:56:38 CDT)
  • Panichakorn Jaiyong (Mon Aug 06 2007 - 23:52:26 CDT)
• A query about the deletion of Hydrogen and re-adding them by psfgen
  • Ashar Malik (Tue Dec 09 2014 - 19:44:20 CST)
  • Kshatresh Dutta Dubey (Tue Dec 09 2014 - 17:23:07 CST)
  • Ashar Malik (Tue Dec 09 2014 - 16:50:08 CST)
  • Kshatresh Dutta Dubey (Tue Dec 09 2014 - 09:39:10 CST)
• a question
  • Vlad Cojocaru (Fri Jan 30 2004 - 07:29:38 CST)
  • John Stone (Tue Feb 06 2001 - 09:55:21 CST)
  • cojocaru vlad (Mon Feb 05 2001 - 10:24:40 CST)
• a question about "measure fit"
  • John Stone (Fri Jun 23 2006 - 11:13:26 CDT)
  • dwang_at_cs.kent.edu (Thu Jun 22 2006 - 20:36:59 CDT)
• A question about atomic symbol and cell-border width using VMD
  • Hamza Bouafia (Tue Apr 13 2021 - 18:29:03 CDT)
• a question about dcd files
  • Ana Celia Vila Verde (Thu Feb 02 2006 - 08:32:35 CST)
  • John Stone (Wed Feb 01 2006 - 14:29:15 CST)
  • Ana Celia Vila Verde (Wed Feb 01 2006 - 13:53:39 CST)
• a question about force field toolkit
  • Mayne, Christopher G (Wed Oct 04 2017 - 01:33:51 CDT)
  • JC Gumbart (Tue Oct 03 2017 - 17:25:20 CDT)
  • James Kress (Tue Oct 03 2017 - 16:48:11 CDT)
  • John Stone (Tue Oct 03 2017 - 13:20:16 CDT)
  • Albert (Tue Oct 03 2017 - 12:47:03 CDT)
• a question about g(r)
  • Ana Celia Vila Verde (Thu Mar 03 2016 - 09:30:18 CST)
  • Richard Wood (Thu Mar 03 2016 - 09:35:00 CST)
  • Richard Wood (Thu Mar 03 2016 - 09:04:07 CST)
• a question about get the coordinates in vector form
  • Axel Kohlmeyer (Fri Apr 15 2005 - 16:19:25 CDT)
  • Eugen Leitl (Fri Apr 15 2005 - 15:45:24 CDT)
  • M SH (Fri Apr 15 2005 - 13:31:45 CDT)
• a question about paratool
  • Jan Saam (Thu Feb 22 2007 - 18:43:57 CST)
  • Javaria Ahmad (Tue Feb 20 2007 - 06:35:52 CST)
• a question about ribbon representation
  • John Stone (Wed Apr 12 2006 - 16:04:05 CDT)
  • yzhou_at_chem.umn.edu (Wed Apr 12 2006 - 15:07:27 CDT)
• A question about the namd energy plugin of VMD
  • Axel Kohlmeyer (Sun Oct 26 2008 - 13:12:06 CDT)
  • wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
• A question about the plugin of salt bridge plugin
  • Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
• a question in using PSFGEN
  • Jim Phillips (Tue Apr 27 2004 - 11:04:31 CDT)
  • Yang Yang (Mon Apr 26 2004 - 21:55:45 CDT)
• a question regarding the signalproc package
  • Axel Kohlmeyer (Tue Jul 14 2015 - 11:45:56 CDT)
  • John Stone (Tue Jul 14 2015 - 10:20:04 CDT)
  • Ana Celia Vila Verde (Thu Jul 09 2015 - 10:34:08 CDT)
• A question with dipwatch.tcl script in VMD
  • John Stone (Mon Aug 19 2013 - 10:45:40 CDT)
  • Ganesh Kamath (Sat Aug 17 2013 - 20:32:42 CDT)
  • Boris Steipe (Sat Aug 17 2013 - 16:58:12 CDT)
  • Ganesh Kamath (Sat Aug 17 2013 - 14:10:52 CDT)
• a script for angular distribution
  • David Wedner (Wed Jan 26 2011 - 11:41:51 CST)
  • David Wedner (Wed Jan 26 2011 - 10:44:34 CST)
• a script to count the frames in which some water molecules interact with selected protein atoms
  • Bennion, Brian (Tue Dec 30 2014 - 10:25:41 CST)
  • sunyeping (Tue Dec 30 2014 - 00:39:04 CST)
• a small bug in solvate 1.3
  • John Stone (Thu May 14 2009 - 20:45:17 CDT)
  • Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
• a suggestion and query on command usage
  • John Stone (Tue Jul 05 2005 - 10:06:10 CDT)
  • Eduard Schreiner (Sat Jul 02 2005 - 10:01:53 CDT)
  • cbala_at_igib.res.in (Fri Jul 01 2005 - 08:08:57 CDT)
• A very minor question on the MacOS X native bundle version
  • MengJuei Hsieh (Wed Nov 27 2002 - 01:28:08 CST)
  • John Stone (Sun Nov 24 2002 - 20:43:06 CST)
  • MengJuei Hsieh (Fri Nov 22 2002 - 19:53:57 CST)
• A vmd bug 1.8a28
  • Stéphane Teletchéa (Thu Oct 31 2002 - 08:01:34 CST)
• a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ?
  • Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
• A VMD script to emulate the Matlab "jet" colorscale
  • John Stone (Wed Dec 09 2009 - 11:48:11 CST)
  • John Stone (Tue Dec 08 2009 - 16:49:40 CST)
• a water box containing only the absorbent heads of
  • Axel Kohlmeyer (Thu May 03 2007 - 07:44:05 CDT)
  • SMAHANE CHALABI (Thu May 03 2007 - 03:11:45 CDT)
• a way to create a nice image
  • Axel Kohlmeyer (Sun Feb 22 2009 - 11:16:17 CST)
  • politr_at_huji.ac.il (Sun Feb 22 2009 - 10:52:01 CST)
  • politr_at_huji.ac.il (Sun Feb 22 2009 - 10:51:35 CST)
  • Axel Kohlmeyer (Sat Feb 21 2009 - 11:03:44 CST)
  • politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
• ABF Calculations Question 1
  • McGuire, Kelly (Fri May 25 2018 - 19:22:03 CDT)
  • Brian Radak (Fri May 25 2018 - 12:40:32 CDT)
  • McGuire, Kelly (Fri May 25 2018 - 10:30:48 CDT)
  • Giacomo Fiorin (Fri May 25 2018 - 08:09:32 CDT)
  • Jérôme Hénin (Fri May 25 2018 - 07:43:40 CDT)
  • McGuire, Kelly (Thu May 24 2018 - 12:10:34 CDT)
• ABF lowerboundary upperboundary
  • McGuire, Kelly (Tue May 29 2018 - 13:54:39 CDT)
• ABF Question
  • McGuire, Kelly (Sat May 26 2018 - 13:44:20 CDT)
• ABF tutorial: Methane-Hydration water going -> Water in gas phase?
  • Maximilian Ebert (Sat May 04 2013 - 08:32:23 CDT)
  • JC Gumbart (Sat May 04 2013 - 08:36:41 CDT)
  • JC Gumbart (Sat May 04 2013 - 00:29:25 CDT)
  • Maximilian Ebert (Fri May 03 2013 - 21:13:38 CDT)
  • Maximilian Ebert (Fri May 03 2013 - 20:49:33 CDT)
• abinit plugin for VMD not yet tried?
  • Axel Kohlmeyer (Mon May 25 2009 - 10:05:30 CDT)
  • Rob (Mon May 25 2009 - 02:04:57 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 08:38:11 CDT)
  • Rob (Sun May 24 2009 - 04:31:17 CDT)
  • Axel Kohlmeyer (Fri May 22 2009 - 10:05:14 CDT)
  • Rob (Fri May 22 2009 - 02:08:15 CDT)
• ABINIT plugin ready for testing: can read GEO and DEN files.
  • Axel Kohlmeyer (Thu Jun 18 2009 - 11:13:59 CDT)
  • John Stone (Thu Jun 18 2009 - 09:59:46 CDT)
  • Rob (Thu Jun 18 2009 - 02:27:08 CDT)
  • Axel Kohlmeyer (Wed Jun 17 2009 - 12:01:30 CDT)
  • John Stone (Wed Jun 17 2009 - 11:33:20 CDT)
  • Rob (Wed Jun 17 2009 - 10:59:23 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2009 - 22:59:20 CDT)
  • Rob (Tue Jun 16 2009 - 21:23:22 CDT)
  • John Stone (Tue Jun 16 2009 - 21:33:31 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2009 - 07:31:03 CDT)
  • Rob (Tue Jun 16 2009 - 03:27:28 CDT)
  • Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
  • John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
  • Rob (Mon Jun 15 2009 - 01:32:28 CDT)
• abnormal water surface after nvt and npt for POPC membrane
  • pxq ÅÓÑ©ÇÛ (Tue Oct 27 2009 - 19:57:58 CDT)
• about ".cpmd" format
  • Axel Kohlmeyer (Fri Jun 04 2010 - 00:50:48 CDT)
  • Liu (Thu Jun 03 2010 - 22:31:58 CDT)
• About "Visualization and Analysis of CPMD data with VMD" tutorial
  • Joshua Adelman (Thu Dec 10 2009 - 05:29:17 CST)
  • Aurum Bai (Thu Dec 10 2009 - 02:29:22 CST)
• about adding ions to an ion channel pore
  • Axel Kohlmeyer (Fri Apr 01 2005 - 01:46:50 CST)
  • Xiaoqing Wang (Thu Mar 31 2005 - 20:59:36 CST)
• about analysis plugin
  • John Stone (Thu Jul 12 2012 - 10:29:05 CDT)
  • oguz gurbulak (Fri Jul 06 2012 - 01:39:08 CDT)
  • Axel Kohlmeyer (Wed Jul 04 2012 - 11:09:07 CDT)
  • oguz gurbulak (Wed Jul 04 2012 - 09:40:30 CDT)
• About Atom Index Order
  • Axel Kohlmeyer (Thu Aug 12 2010 - 18:20:52 CDT)
  • Cun Zhang (Thu Aug 12 2010 - 04:58:57 CDT)
  • Axel Kohlmeyer (Thu Aug 12 2010 - 04:52:38 CDT)
  • Cun Zhang (Thu Aug 12 2010 - 03:52:10 CDT)
  • Axel Kohlmeyer (Wed Aug 11 2010 - 22:01:11 CDT)
  • Cun Zhang (Wed Aug 11 2010 - 20:59:08 CDT)
• about atomselect command
  • Marzieh Alishahi (Mon Dec 24 2012 - 11:32:49 CST)
  • Caio S. Souza (Mon Dec 24 2012 - 11:17:24 CST)
  • Marzieh Alishahi (Mon Dec 24 2012 - 09:13:08 CST)
• about average structure
  • Jan Saam (Sun Mar 21 2004 - 05:16:00 CST)
• about CHARMM electrostaic potential
  • ivana adamovic (Mon Feb 05 2007 - 11:56:35 CST)
  • John Stone (Mon Feb 05 2007 - 11:03:04 CST)
  • ivana adamovic (Mon Feb 05 2007 - 09:46:47 CST)
• About CHARMM electrostaic potential map
  • ivana adamovic (Wed Jan 31 2007 - 14:30:11 CST)
  • John Stone (Wed Jan 31 2007 - 13:37:30 CST)
  • ivana adamovic (Wed Jan 31 2007 - 09:26:19 CST)
• about CHARMM electrostatic potential
  • ivana adamovic (Mon Feb 05 2007 - 14:54:15 CST)
  • John Stone (Mon Feb 05 2007 - 14:47:51 CST)
  • ivana adamovic (Mon Feb 05 2007 - 14:44:51 CST)
• About Cluster Plug-in
  • John Stone (Tue Feb 05 2008 - 09:45:23 CST)
  • OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
• about command measure dipole
  • Axel Kohlmeyer (Wed Feb 24 2010 - 13:22:51 CST)
  • matziast_at_med.uth.gr (Wed Feb 24 2010 - 12:37:49 CST)
• about command readpdb?
  • John Stone (Mon Nov 24 2003 - 14:14:21 CST)
  • Li Qiang (Mon Nov 24 2003 - 09:12:11 CST)
• about docking with VMD
  • Nuno Sousa Cerqueira (Wed Jul 20 2011 - 10:32:41 CDT)
  • Cristina Rodríguez (Tue Jul 19 2011 - 17:34:25 CDT)
  • Hui WEI (Tue Jul 19 2011 - 16:37:36 CDT)
• About drawing bonds.
  • John Stone (Wed Apr 24 2002 - 10:11:10 CDT)
  • Luca UvA (Wed Apr 24 2002 - 08:07:32 CDT)
• about dynamical change color of atoms
  • John Stone (Thu Apr 01 2004 - 12:57:33 CST)
  • Emmanouil_Bambakopoulos (Thu Apr 01 2004 - 09:35:40 CST)
• About FFTP with transition metal complexes
  • JC Gumbart (Wed Feb 29 2012 - 20:36:18 CST)
  • Francesco Pietra (Wed Feb 29 2012 - 05:52:03 CST)
  • JC Gumbart (Sat Feb 18 2012 - 16:39:55 CST)
  • Mayne, Christopher G (Sat Feb 18 2012 - 15:39:58 CST)
  • Francesco Pietra (Sat Feb 18 2012 - 00:23:01 CST)
• about frame
  • John Stone (Tue Jan 20 2004 - 10:50:37 CST)
  • moggces_at_rx.mc.ntu.edu.tw (Mon Jan 19 2004 - 20:17:40 CST)
• about gamess plugin
  • John Stone (Thu Sep 29 2005 - 10:59:51 CDT)
  • mashaojienuaa (Thu Sep 29 2005 - 01:40:50 CDT)
  • John Stone (Mon Jun 06 2005 - 12:49:20 CDT)
  • mashaojie163 (Thu Jun 02 2005 - 20:50:59 CDT)
• about graphics accelaration
  • John Stone (Wed May 15 2002 - 11:21:56 CDT)
  • Stéphane Teletchéa (Wed May 15 2002 - 10:47:04 CDT)
  • Stéphane Teletchéa (Mon Apr 15 2002 - 03:22:03 CDT)
  • John Stone (Fri Apr 12 2002 - 12:27:41 CDT)
  • Emanuel Vamvakopoulos (Fri Apr 12 2002 - 11:36:49 CDT)
• About Hydrogen bond calculation
  • ÖÜÎIJý (Thu Nov 13 2008 - 03:20:03 CST)
• about inorganic builder and define variable
  • hamid mosaddeghi (Fri Jan 18 2013 - 04:53:21 CST)
  • Axel Kohlmeyer (Fri Jan 18 2013 - 04:27:40 CST)
  • hamid mosaddeghi (Fri Jan 18 2013 - 03:16:37 CST)
  • Marzieh Alishahi (Fri Jan 18 2013 - 00:51:15 CST)
  • hamid mosaddeghi (Thu Jan 17 2013 - 16:19:23 CST)
• About loading multiple XYZ trajectories
  • Giacomo Fiorin (Wed Apr 18 2018 - 12:18:02 CDT)
  • Gulce Kalyoncu (Wed Apr 18 2018 - 10:51:04 CDT)
• about maximum number of atoms
  • Brian Bennion (Wed Aug 02 2006 - 17:55:28 CDT)
  • John Stone (Wed Aug 02 2006 - 17:25:32 CDT)
  • L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 17:04:07 CDT)
  • John Stone (Wed Aug 02 2006 - 16:53:53 CDT)
  • L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 16:41:16 CDT)
  • John Stone (Wed Aug 02 2006 - 15:39:50 CDT)
  • L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 15:25:41 CDT)
• About mdffi cc
  • John Stone (Thu Aug 06 2015 - 16:29:32 CDT)
  • Ryan McGreevy (Thu Aug 06 2015 - 16:22:17 CDT)
  • Kevin C Chan (Thu Aug 06 2015 - 01:12:27 CDT)
• about measure dihedral angle
  • cong chen (Thu May 08 2008 - 20:53:08 CDT)
• about measuring volume of the binding site
  • John Stone (Sun Feb 15 2009 - 12:59:15 CST)
  • Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
• about new vmd on windows
  • mashaojie163 (Tue Oct 11 2005 - 04:11:24 CDT)
• About occupancy volume maps
  • Axel Kohlmeyer (Thu Jun 19 2008 - 05:20:24 CDT)
  • Ignacio Fernández Galván (Thu Jun 19 2008 - 02:43:11 CDT)
  • John Stone (Thu Jun 19 2008 - 00:38:25 CDT)
  • Ignacio Fernández Galván (Fri Jun 13 2008 - 05:40:17 CDT)
• About open file .pdbqt in VMD software
  • John Stone (Mon Dec 19 2011 - 17:29:30 CST)
• About openning a file to write in callback function
  • Axel Kohlmeyer (Mon Apr 23 2007 - 14:00:35 CDT)
  • preeda (Mon Apr 23 2007 - 12:07:59 CDT)
• about opls-aam ff for small molecules
  • Francesco Pietra (Wed Oct 07 2015 - 16:16:15 CDT)
• about parameter "wrapAll"
  • ×ÞÑ©Çç (Wed Aug 16 2006 - 02:57:26 CDT)
• about paratool
  • Axel Kohlmeyer (Thu Jun 03 2010 - 04:59:08 CDT)
  • Francesco Pietra (Thu Jun 03 2010 - 02:50:05 CDT)
  • Axel Kohlmeyer (Wed Jan 27 2010 - 04:48:11 CST)
  • Caio Veloso (Tue Jan 26 2010 - 11:21:13 CST)
  • saam (Tue Mar 11 2008 - 11:56:45 CDT)
  • laura (Wed Mar 05 2008 - 02:33:41 CST)
  • Francesco Pietra (Wed May 23 2007 - 09:38:40 CDT)
• About PLUMED with NAMD VMD
  • andrea spitaleri (Thu Feb 28 2013 - 02:46:34 CST)
  • John Stone (Wed Feb 27 2013 - 10:10:48 CST)
  • Francesco Pietra (Wed Feb 27 2013 - 02:16:28 CST)
• About psf file
  • Axel Kohlmeyer (Wed Jun 29 2011 - 08:31:02 CDT)
  • safron saif (Wed Jun 29 2011 - 04:02:57 CDT)
• about psf file generation
  • Axel Kohlmeyer (Tue Aug 02 2011 - 07:43:29 CDT)
  • sajad falsafi (Tue Aug 02 2011 - 02:12:54 CDT)
  • safron saif (Mon Aug 01 2011 - 07:22:08 CDT)
• about psfgen patch
  • Jérôme Hénin (Thu Sep 23 2010 - 11:58:38 CDT)
  • Zhang, Jiong (MU-Student) (Thu Sep 23 2010 - 09:20:39 CDT)
• about resid
  • moggces (Thu Nov 20 2003 - 11:16:17 CST)
  • Justin Gullingsrud (Thu Nov 20 2003 - 12:16:35 CST)
• about shape order parameter
  • Emmanuel Vamvakopoulos (Sat May 24 2003 - 07:12:07 CDT)
• About snapshot rendering in VMD-1.9.2
  • Remya Ann (Wed Jul 13 2016 - 02:09:17 CDT)
  • John Stone (Wed Jul 13 2016 - 01:19:05 CDT)
  • Remya Ann (Tue Jul 12 2016 - 12:22:08 CDT)
• about superimposing by VMD
  • John Stone (Fri May 09 2003 - 10:46:46 CDT)
  • Hu, Xiaohua (Wed May 07 2003 - 13:36:47 CDT)
• About Tcl command
  • zhjjvmd (Sun Apr 06 2008 - 01:17:54 CDT)
  • Axel Kohlmeyer (Sun Apr 06 2008 - 00:58:40 CDT)
  • zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
• about tcl program and run tcl script in namd
  • Justin Gullingsrud (Sat Apr 16 2005 - 16:42:52 CDT)
  • Gino (Sat Apr 16 2005 - 01:31:23 CDT)
• About the criterion of H bond
  • Axel Kohlmeyer (Sat Jan 02 2010 - 03:33:38 CST)
  • yongle (Sat Jan 02 2010 - 02:23:18 CST)
• about the diffusion & msd plugin
  • Mayne, Christopher G (Mon Mar 30 2015 - 09:30:13 CDT)
  • M K (Mon Mar 30 2015 - 01:57:12 CDT)
• about the psfgen of vmd
  • John Stone (Tue Mar 21 2006 - 10:37:14 CST)
  • Shulin Zhuang (Tue Mar 21 2006 - 08:46:28 CST)
• About the syntax in Autopsf - Add Patch for PRES PLIG
  • Francesco Pietra (Sun Oct 30 2011 - 10:34:43 CDT)
  • Francesco Pietra (Sun Oct 30 2011 - 03:28:27 CDT)
• about the wrap and unwrap by pbc plugin
  • Kong, Ren (Tue Aug 06 2013 - 11:06:41 CDT)
• about TkConsole
  • cong chen (Wed Apr 08 2009 - 07:27:52 CDT)
  • Axel Kohlmeyer (Tue Apr 07 2009 - 21:32:40 CDT)
  • cong chen (Tue Apr 07 2009 - 20:04:45 CDT)
  • Axel Kohlmeyer (Tue Apr 07 2009 - 12:58:48 CDT)
  • cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
• About using trace
  • John Stone (Fri Apr 20 2007 - 12:02:14 CDT)
  • preeda (Fri Apr 20 2007 - 10:04:09 CDT)
• about viewing charge density
  • John Stone (Sun Apr 02 2006 - 14:37:46 CDT)
  • jun (Sun Apr 02 2006 - 14:00:58 CDT)
• about visualization in VMD
  • Axel Kohlmeyer (Thu Feb 21 2013 - 06:41:45 CST)
  • hamid mosaddeghi (Thu Feb 21 2013 - 05:32:12 CST)
• about vmd
  • John Stone (Wed Dec 29 2004 - 18:07:49 CST)
  • yoongho (Wed Dec 29 2004 - 06:58:51 CST)
• About VMD compile in win32
  • John Stone (Wed Mar 08 2006 - 11:18:25 CST)
  • mustapha.hamdi_at_ensi-bourges.fr (Wed Mar 08 2006 - 12:04:29 CST)
• about vmd solvation plugin
  • David Li (Wed Jun 09 2010 - 05:33:10 CDT)
  • Axel Kohlmeyer (Wed Jun 09 2010 - 07:11:11 CDT)
  • Axel Kohlmeyer (Sat Jun 05 2010 - 19:32:54 CDT)
  • David Li (Sat Jun 05 2010 - 18:31:36 CDT)
• about writepdb
  • cong chen (Mon May 05 2008 - 00:08:53 CDT)
  • JC Gumbart (Mon May 05 2008 - 00:18:00 CDT)
• absolute C.O.M motion calculation script: help
  • John Stone (Fri May 18 2007 - 16:54:42 CDT)
  • hl332_at_drexel.edu (Wed May 16 2007 - 11:06:45 CDT)
• Absolute ruler or position limits of the current view
  • John Stone (Wed Dec 01 2021 - 00:55:03 CST)
  • Philip Loche (Thu Nov 25 2021 - 07:50:20 CST)
• Absolute scaling? "Scale to #" does this?
  • Dallas Warren (Thu Oct 17 2019 - 04:12:08 CDT)
  • Dallas Warren (Mon Oct 07 2019 - 15:28:34 CDT)
• abuot avpos
  • John Stone (Wed Feb 23 2011 - 13:02:12 CST)
  • emiliawu_at_dicp.ac.cn (Thu Feb 24 2011 - 00:57:00 CST)
• Accelerated MD (aMD)
  • Ramin Ekhteiari (Sat Jul 26 2014 - 06:06:25 CDT)
• Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU
  • John Stone (Tue Jun 02 2009 - 10:25:36 CDT)
  • Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
• Access to bond information inside a VMD plugin...
  • Axel Kohlmeyer (Mon Oct 09 2006 - 12:14:55 CDT)
  • Miller, Patrick (Mon Oct 09 2006 - 11:19:54 CDT)
• access to molfile plugin source code
  • Peter Schmidtke (Sat Apr 22 2017 - 17:44:42 CDT)
  • Peter Schmidtke (Sat Apr 22 2017 - 16:20:52 CDT)
• Access to Python libraries from Mandrake8.1
  • Justin Gullingsrud (Sun Mar 03 2002 - 03:16:34 CST)
  • John Stone (Thu Feb 28 2002 - 09:59:42 CST)
  • jen ramus (Wed Feb 27 2002 - 19:08:08 CST)
• Accessible volume around an atom
  • John Stone (Thu Aug 28 2014 - 13:22:56 CDT)
  • Dudo (Thu Aug 28 2014 - 04:55:01 CDT)
  • Ebert Maximilian (Wed Aug 27 2014 - 13:22:29 CDT)
• accessing bonds angles dihedrals etc lists after PSF file is read into VMD
  • Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
  • John Stone (Mon Jan 26 2009 - 15:42:17 CST)
  • Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
  • Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
  • Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
  • John Stone (Thu Jan 22 2009 - 11:33:21 CST)
  • Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
• Accessing Mapped Drive Files on iMac
  • Barry Isralewitz (Fri May 12 2017 - 14:11:13 CDT)
  • Barry Isralewitz (Fri May 12 2017 - 12:01:17 CDT)
• Accessing tachyon optix from commandline and dat file generation
  • John Stone (Tue Apr 04 2017 - 15:30:20 CDT)
  • Andrea Spitaleri (Tue Apr 04 2017 - 05:04:45 CDT)
  • John Stone (Mon Apr 03 2017 - 09:45:35 CDT)
  • Amit Gupta (Mon Apr 03 2017 - 04:16:44 CDT)
  • Andrea Spitaleri (Mon Apr 03 2017 - 02:36:37 CDT)
  • Amit Gupta (Mon Apr 03 2017 - 01:41:09 CDT)
• Accessing TCL through Python interface
  • Daniel B. Faken (Sat May 14 2005 - 15:09:35 CDT)
• accessing values for selection keywords
  • Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
  • Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
• accessing VMD help
  • Robert Campbell (Fri Oct 31 2003 - 09:51:53 CST)
  • Brian Bennion (Fri Oct 31 2003 - 10:14:42 CST)
  • John Robert Kitchin (Fri Oct 31 2003 - 09:22:10 CST)
  • Fernandez-Alonso, F (Felix) (Fri Oct 31 2003 - 07:42:15 CST)
• ACE and NH2
  • ÁèáíÜóéïò Óôáõñáêïýäçò (Tue Jul 03 2007 - 16:37:43 CDT)
  • Peter Freddolino (Tue Jul 03 2007 - 16:46:26 CDT)
• Acetone as solvent
  • Jonasz Sowada (Sat Dec 31 2016 - 17:34:33 CST)
• Acetylation AutoPSF
  • Peter Freddolino (Mon Aug 26 2019 - 19:26:17 CDT)
  • Ernesto Aleksei Delgado Hurtado (Mon Aug 26 2019 - 17:54:26 CDT)
  • Reinke.Patrick_at_mh-hannover.de (Mon Aug 26 2019 - 10:13:01 CDT)
• ACS award information, Oct 15 deadline]
  • John Stone (Tue Aug 24 2010 - 09:48:02 CDT)
• ACS COMP awards announcement
  • John Stone (Wed Sep 06 2017 - 14:27:41 CDT)
• ACS COMP Division awards for Fall 2015 National Meeting in Boston
  • Carlos Simmerling (Thu Feb 05 2015 - 10:55:09 CST)
• ACS COMP Division student and junior faculty awards for Fall 2014 meeting in San Francisco
  • Carlos Simmerling (Tue Feb 18 2014 - 15:30:45 CST)
• ACS COMP division travel awards
  • John Stone (Fri Aug 07 2015 - 11:35:14 CDT)
• ACS COMP Division travel awards for Spring 2015 National Meeting in Denver
  • Carlos Simmerling (Fri Sep 12 2014 - 09:42:32 CDT)
• ACTC Triangle Consolidation
  • John Stone (Fri Dec 12 2003 - 14:32:00 CST)
  • Tyler Luchko (Fri Dec 12 2003 - 12:24:06 CST)
  • John Stone (Fri Dec 12 2003 - 10:06:50 CST)
  • Tyler Luchko (Thu Dec 11 2003 - 16:37:33 CST)
• Action halted on error in ffTK: The following output QM was not recognized
  • JC Gumbart (Tue Jun 09 2020 - 20:12:50 CDT)
  • Valentin Gogonea (Tue Jun 09 2020 - 20:05:05 CDT)
  • JC Gumbart (Tue Jun 09 2020 - 18:03:55 CDT)
  • JC Gumbart (Tue Jun 09 2020 - 12:27:22 CDT)
  • Valentin Gogonea (Mon Jun 08 2020 - 18:16:55 CDT)
• Activation energy
  • Alexis Salas (Thu Aug 19 2004 - 13:33:36 CDT)
• actual simulation time for a frame
  • Axel Kohlmeyer (Thu Sep 11 2014 - 08:38:34 CDT)
  • Dominik Bottländer (Tue Sep 09 2014 - 12:18:57 CDT)
  • Axel Kohlmeyer (Mon Sep 08 2014 - 12:45:34 CDT)
  • Dominik Bottländer (Mon Sep 08 2014 - 12:07:12 CDT)
  • John Stone (Mon Sep 08 2014 - 10:08:18 CDT)
  • Dominik Bottländer (Sat Sep 06 2014 - 01:36:43 CDT)
  • John Stone (Thu Sep 04 2014 - 11:10:30 CDT)
  • Axel Kohlmeyer (Thu Sep 04 2014 - 10:51:44 CDT)
  • Dominik Bottländer (Thu Sep 04 2014 - 10:12:22 CDT)
• acylated and amidated parameters.
  • Bennion, Brian (Wed Nov 14 2012 - 11:52:05 CST)
• AD:Family Reunion T Shirts & More
  • hifiber7_at_compuserve.com (Sat Feb 19 2000 - 11:12:59 CST)
  • hifiber7_at_compuserve.com (Sat Feb 12 2000 - 02:20:20 CST)
• Adaptive real time selection and coloring in default display
  • John Stone (Fri Jun 28 2019 - 11:12:44 CDT)
  • Vermaas, Joshua (Thu Jun 27 2019 - 17:54:01 CDT)
  • Vermaas, Joshua (Thu Jun 27 2019 - 12:04:01 CDT)
  • Giacomo Fiorin (Thu Jun 27 2019 - 11:03:11 CDT)
  • Bart Bruininks (Thu Jun 27 2019 - 10:05:11 CDT)
• Add a gap in my simulation
  • Axel Kohlmeyer (Thu Sep 05 2013 - 13:38:51 CDT)
  • Axel Kohlmeyer (Thu Sep 05 2013 - 14:42:28 CDT)
  • Ali Alizadeh (Thu Sep 05 2013 - 14:41:00 CDT)
  • Ali Alizadeh (Thu Sep 05 2013 - 11:40:46 CDT)
  • Ali Alizadeh (Thu Sep 05 2013 - 11:36:54 CDT)
• add a new color
  • John Stone (Mon Feb 23 2004 - 11:07:41 CST)
  • Vlad Cojocaru (Sun Feb 22 2004 - 12:51:11 CST)
• add a new file to vmd1.8.3 on linux(FC4)
  • John Stone (Tue Nov 01 2005 - 15:09:30 CST)
  • baogen duan (Sun Oct 30 2005 - 21:50:22 CST)
• add a new file type to VMD on linux(FC4)
  • John Stone (Fri Oct 28 2005 - 10:24:32 CDT)
  • John Stone (Fri Oct 28 2005 - 09:55:51 CDT)
  • baogen duan (Thu Oct 27 2005 - 22:32:59 CDT)
• add a new representation style to VMD
  • John Stone (Tue Feb 03 2009 - 09:02:27 CST)
  • Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
• Add a surface to a pdb file
  • Taufik Al-Sarraj (Wed May 05 2010 - 18:53:30 CDT)
  • John Stone (Mon Mar 08 2010 - 14:32:10 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 13:47:43 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 10:05:36 CST)
  • John Stone (Mon Mar 08 2010 - 10:04:00 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
  • John Stone (Mon Mar 08 2010 - 09:25:27 CST)
  • Fatemesadat Emami (Mon Mar 08 2010 - 08:59:14 CST)
• Add bond across boundaries
  • Passerone, Daniele (Tue May 06 2014 - 09:58:19 CDT)
  • Axel Kohlmeyer (Tue May 06 2014 - 10:06:39 CDT)
  • Axel Kohlmeyer (Tue May 06 2014 - 09:15:13 CDT)
  • Passerone, Daniele (Tue May 06 2014 - 08:25:54 CDT)
• Add H-atoms to Pdb file for NMR
  • John Stone (Tue Apr 20 2004 - 15:06:59 CDT)
  • chandran karunakaran (Tue Apr 20 2004 - 11:22:32 CDT)
• add Mg2+
  • Peter Freddolino (Fri Dec 21 2007 - 11:09:10 CST)
  • Lixia Jin Day (Fri Dec 21 2007 - 10:52:42 CST)
  • John Stone (Wed Dec 19 2007 - 15:37:16 CST)
  • Lixia Jin Day (Wed Dec 19 2007 - 15:27:04 CST)
  • John Stone (Wed Dec 19 2007 - 14:09:30 CST)
  • Lixia Jin Day (Thu Dec 13 2007 - 11:19:06 CST)
• add new color index do VMD
  • Vermaas, Joshua (Wed Nov 20 2019 - 09:47:04 CST)
  • Nuno Cerqueira (Tue Nov 19 2019 - 10:54:52 CST)
• Add solvation box tool
  • Dong Luo (Thu Jun 09 2011 - 09:46:33 CDT)
• Add specific h-bonds
  • Jason Smith (Thu Aug 12 2021 - 10:47:28 CDT)
  • Dawid das (Thu Aug 12 2021 - 08:59:35 CDT)
• Add Topology and Parameters in QwikMD
  • Efthymiou, Christos (Tue Aug 30 2022 - 10:09:37 CDT)
• Add transparent plane to molecular
  • Rob (Tue Jan 30 2007 - 09:05:36 CST)
• Add transparent plane to molecular structure
  • Axel Kohlmeyer (Tue Jan 30 2007 - 11:04:27 CST)
  • Rob (Tue Jan 30 2007 - 03:12:21 CST)
  • Axel Kohlmeyer (Mon Jan 29 2007 - 21:31:50 CST)
  • Rob (Mon Jan 29 2007 - 20:57:38 CST)
• Add user output to DCD trajectories
  • Nima Nouri (Thu Jul 21 2011 - 18:41:05 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2011 - 09:23:45 CDT)
  • Nima Nouri (Thu Jul 14 2011 - 05:18:29 CDT)
• add water on the top of protein border
  • Xiaoqing Wang (Wed Apr 06 2005 - 09:20:24 CDT)
• Add-H for crystallization water only
  • Francesco Pietra (Wed May 09 2012 - 15:08:09 CDT)
• Add/Remove Bonds
  • John Stone (Thu Jun 24 2010 - 16:47:36 CDT)
  • Rabab Toubar (Thu Jun 24 2010 - 12:27:20 CDT)
• add/remove bonds between different types of atoms
  • John Stone (Tue Jan 06 2015 - 13:27:50 CST)
  • Ashar Malik (Mon Jan 05 2015 - 08:27:03 CST)
  • DanLiu (Mon Jan 05 2015 - 05:20:07 CST)
• Addforces
  • Sourav Pal (Mon Jul 17 2017 - 01:11:55 CDT)
• adding 3rdparty plugins in VMD-1.9.1
  • John Stone (Wed Oct 10 2012 - 11:14:27 CDT)
  • Ban Arn (Fri Oct 05 2012 - 07:00:11 CDT)
• Adding a hydrogen through the command line and Molefacture
  • Peter Freddolino (Thu May 24 2018 - 21:57:32 CDT)
  • David Stevens (Thu May 24 2018 - 11:58:39 CDT)
• Adding a keyword to mol addfile
  • Tristan Croll (Thu Jan 30 2014 - 15:07:21 CST)
  • Maxim Belkin (Thu Jan 30 2014 - 09:58:25 CST)
  • Joaquim Rui de Castro Rodrigues (Thu Jan 30 2014 - 08:23:09 CST)
  • Tristan Croll (Wed Jan 29 2014 - 22:39:41 CST)
• Adding a logo to a screenshot
  • John Stone (Fri May 20 2005 - 15:28:47 CDT)
  • Palmer, Teresa (Fri May 20 2005 - 15:12:55 CDT)
• adding a metal ion
  • Joyce Tan (Tue Sep 21 2010 - 20:39:43 CDT)
• adding a representation for a selection which is varying from frame to frame in a trajectory
  • Lena Simine (Thu Apr 21 2016 - 02:19:24 CDT)
• Adding a three letter residue name to VMD's protein recognition
  • John Stone (Fri Nov 11 2011 - 12:24:10 CST)
  • J. Nathan Scott (Thu Oct 27 2011 - 13:13:09 CDT)
• Adding a Water Box
  • Axel Kohlmeyer (Mon Feb 23 2009 - 19:00:55 CST)
  • Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
• adding additional atoms to psf and dcd
  • Vlad Cojocaru (Mon Feb 23 2015 - 04:15:44 CST)
  • Josh Vermaas (Sat Feb 21 2015 - 14:29:49 CST)
  • Vlad Cojocaru (Sat Feb 21 2015 - 03:59:33 CST)
• Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection)
  • Sam Wallace (Sun Nov 13 2011 - 04:58:37 CST)
  • John Stone (Fri Nov 11 2011 - 10:06:58 CST)
  • Sam Wallace (Wed Nov 09 2011 - 16:38:39 CST)
• Adding an atom to the existing pdb
  • Axel Kohlmeyer (Wed May 19 2010 - 06:36:59 CDT)
  • Narasimhan LOGANATHAN (Wed May 19 2010 - 05:18:22 CDT)
• Adding an Implicit Solvation Compatible with below ffTK suggested Methods INQUIRY
  • Joel Subach (Sat May 11 2024 - 10:49:03 CDT)
  • Joel Subach (Wed May 08 2024 - 14:06:02 CDT)
  • Joel Subach (Tue May 07 2024 - 13:26:58 CDT)
• Adding Atoms in Colors Menu
  • Justin Gullingsrud (Fri Apr 02 2004 - 10:18:01 CST)
  • Alexandre Suman de Araujo (Fri Apr 02 2004 - 03:33:52 CST)
• adding atoms to empty molecules
  • Thomas Evangelidis (Tue Jun 02 2009 - 15:57:56 CDT)
  • Axel Kohlmeyer (Tue Jun 02 2009 - 09:22:43 CDT)
  • Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
• adding atomselections?
  • Fatemesadat Emami (Sat May 08 2010 - 22:15:43 CDT)
  • Nicholas Musolino (Sat May 08 2010 - 20:10:24 CDT)
  • Axel Kohlmeyer (Sat May 08 2010 - 19:34:30 CDT)
  • Fatemesadat Emami (Sat May 08 2010 - 19:42:24 CDT)
  • Fatemesadat Emami (Sat May 08 2010 - 18:28:48 CDT)
• Adding bonds between many metal atoms
  • Qiang Fu (Mon Feb 28 2011 - 03:41:34 CST)
  • Axel Kohlmeyer (Fri Feb 25 2011 - 10:33:27 CST)
  • Qiang Fu (Fri Feb 25 2011 - 09:48:45 CST)
• adding bonds between segments
  • Justin Gullingsrud (Thu Feb 19 2004 - 12:28:52 CST)
  • Streiff, John H. (Tue Feb 17 2004 - 14:20:24 CST)
• Adding bonds in a script
  • Ignacio Fernández Galván (Thu Sep 28 2006 - 04:08:08 CDT)
• adding bonds with the mouse and writing psf
  • Axel Kohlmeyer (Fri May 15 2009 - 10:28:59 CDT)
  • John Stone (Thu May 14 2009 - 20:59:20 CDT)
  • Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
• Adding cadmium into protein
  • John Stone (Wed Oct 20 2010 - 10:23:25 CDT)
  • Joyce Tan (Wed Oct 20 2010 - 01:55:36 CDT)
• Adding color scale bar on the screen
  • John Stone (Thu Apr 14 2005 - 20:36:53 CDT)
  • Jay Lee (Thu Apr 14 2005 - 18:50:22 CDT)
• adding free Fe(II) ions?
  • Olya Kravchenko (Mon Apr 25 2016 - 14:25:32 CDT)
  • Ashar Malik (Thu Apr 21 2016 - 05:07:04 CDT)
  • Olya Kravchenko (Wed Apr 20 2016 - 15:01:39 CDT)
• Adding groups
  • Tim Lo (Wed Apr 08 2015 - 09:34:22 CDT)
  • Neelanjana Sengupta (Wed Apr 08 2015 - 09:01:41 CDT)
• adding hydrogen atoms
  • Peter Freddolino (Tue May 02 2006 - 13:00:10 CDT)
  • Naser, Md Abu (Tue May 02 2006 - 09:20:34 CDT)
• Adding hydrogens breaks "protein" atomselection and bonds
  • Josh Vermaas (Wed Mar 16 2016 - 09:29:31 CDT)
  • Axel Kohlmeyer (Wed Mar 16 2016 - 09:20:30 CDT)
  • Peter Freddolino (Wed Mar 16 2016 - 09:23:48 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 09:27:00 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 09:25:33 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 09:01:22 CDT)
  • Peter Freddolino (Wed Mar 16 2016 - 08:55:12 CDT)
  • Stefan Doerr (Wed Mar 16 2016 - 06:25:01 CDT)
• Adding Hydroxide Ions to the simulation box
  • Brian Radak (Wed Mar 21 2018 - 09:15:30 CDT)
  • Aman Jindal (Wed Mar 21 2018 - 00:56:31 CDT)
  • Francesco Pietra (Tue Mar 20 2018 - 10:55:21 CDT)
  • Brian Radak (Tue Mar 20 2018 - 09:42:54 CDT)
  • Aman Jindal (Tue Mar 20 2018 - 01:56:10 CDT)
• Adding labels, etc.
  • Justin Gullingsrud (Sun Jul 14 2002 - 12:25:20 CDT)
  • Sanjeev B.S. (Sun Jul 14 2002 - 05:40:26 CDT)
• adding lipid bilayers
  • Goutham (Fri Mar 06 2009 - 08:38:25 CST)
  • Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
  • Goutham (Fri Mar 06 2009 - 00:46:47 CST)
• Adding missing residues
  • Joyce Tan (Thu Jun 09 2011 - 01:50:05 CDT)
• Adding missing residues to a protein
  • sriteja mantha (Wed Feb 02 2011 - 23:40:47 CST)
• adding modified residue into psf file from pdb
  • Bennion, Brian (Mon Jan 13 2020 - 17:20:32 CST)
• adding new atoms to a molecule from a script
  • Eduard Schreiner (Thu Oct 05 2006 - 08:20:54 CDT)
  • Enzo Vitale (Thu Oct 05 2006 - 05:20:55 CDT)
• Adding New Color Definitions to Color Form
  • John Stone (Tue Jan 24 2006 - 10:11:21 CST)
  • Adrian Koh (Tue Jan 24 2006 - 03:08:48 CST)
• adding new colors
  • Leonhard Henkes (Thu Mar 13 2014 - 09:21:57 CDT)
• Adding other online PDB data bases to VMD
  • John Stone (Tue Jul 20 2010 - 10:52:25 CDT)
  • Axel Kohlmeyer (Fri Jul 16 2010 - 19:58:22 CDT)
  • Ian Stokes-Rees (Fri Jul 16 2010 - 18:46:31 CDT)
• Adding oxygen molecules
  • Kiana Jahani (Thu Jul 15 2021 - 04:12:50 CDT)
• adding patches via autopsf
  • Bennion, Brian (Wed Mar 21 2012 - 11:34:47 CDT)
• adding residue at start or end
  • Peter Freddolino (Tue Jun 19 2007 - 12:41:10 CDT)
  • Zhenwei Lu (Tue Jun 19 2007 - 10:58:30 CDT)
• Adding residues to dowser
  • John Stone (Mon Oct 03 2016 - 15:42:23 CDT)
  • nikolaev_at_spbau.ru (Thu Sep 29 2016 - 16:32:10 CDT)
• Adding Salt to a system
  • Ioana Cozmuta (Wed Jun 22 2005 - 20:59:47 CDT)
  • Thomas C. Bishop (Thu May 19 2005 - 10:09:26 CDT)
• adding selections
  • Axel Kohlmeyer (Fri Oct 20 2006 - 14:03:56 CDT)
  • Myunggi Yi (Fri Oct 20 2006 - 13:04:21 CDT)
• Adding Single Residues to a Protein
  • John Stone (Tue Jul 20 2010 - 14:59:19 CDT)
  • Anwaar Al-Zireeni (Thu Jul 15 2010 - 18:34:56 CDT)
• adding solvation box
  • Ashar Malik (Thu Dec 11 2014 - 15:05:14 CST)
  • Kshatresh Dutta Dubey (Thu Dec 11 2014 - 09:53:24 CST)
• Adding Topology+Parameter For Small Molecule in QwikMD
  • Efthymiou, Christos (Tue Aug 09 2022 - 08:09:41 CDT)
• Adding two separate pdb files: Lipid Bilayer's with Protein's
  • Axel Kohlmeyer (Wed May 20 2009 - 16:34:45 CDT)
  • Lalit (Wed May 20 2009 - 13:36:56 CDT)
  • David Tanner (Tue May 19 2009 - 11:00:30 CDT)
  • Lalit (Mon May 18 2009 - 18:07:34 CDT)
• adding urea to a protein-water system
  • L. Michel Espinoza-Fonseca (Mon Jul 30 2007 - 05:05:46 CDT)
• adding water box
  • John Stone (Tue May 18 2010 - 12:36:24 CDT)
  • Hao Sun (Mon May 17 2010 - 19:09:57 CDT)
  • Hao Sun (Mon May 17 2010 - 19:09:36 CDT)
• Adding water in protein
  • Axel Kohlmeyer (Mon Sep 19 2011 - 07:01:15 CDT)
  • madhumita das (Mon Sep 19 2011 - 06:01:15 CDT)
• adding waters only in top of lipid
  • Justin Gullingsrud (Thu Feb 19 2004 - 12:30:36 CST)
  • Satyavani Vemparala (Tue Feb 17 2004 - 12:15:55 CST)
• addition on CHARMM electrostatic pot.
  • ivana adamovic (Fri Feb 02 2007 - 09:11:44 CST)
  • John Stone (Thu Feb 01 2007 - 17:27:36 CST)
  • ivana adamovic (Thu Feb 01 2007 - 13:42:08 CST)
• Adjacent surface?
  • John Stone (Mon Aug 22 2005 - 11:05:33 CDT)
  • Brian Bennion (Thu Aug 18 2005 - 14:24:07 CDT)
  • paul d jones (Thu Aug 18 2005 - 07:54:31 CDT)
• Adjusting perspective
  • John Stone (Mon May 28 2007 - 15:57:51 CDT)
  • Cesar Luis Avila (Thu May 24 2007 - 11:33:40 CDT)
• Adjusting R/S configuration
  • Peter Freddolino (Sat Aug 11 2007 - 08:43:09 CDT)
  • Francesco Pietra (Sat Aug 11 2007 - 02:21:47 CDT)
• Adsorption and diffusion
  • Axel Kohlmeyer (Tue Dec 14 2010 - 04:21:44 CST)
  • candy deck (Tue Dec 14 2010 - 03:38:53 CST)
• Adsorption VMD Tcl script error
  • Axel Kohlmeyer (Wed Feb 29 2012 - 16:56:31 CST)
  • Ajasja LjubetiÄ� (Wed Feb 29 2012 - 16:09:59 CST)
  • John Stone (Wed Feb 29 2012 - 14:05:21 CST)
  • vladanstefanovic_at_kg.ac.rs (Wed Feb 29 2012 - 13:51:58 CST)
• advanced python console
  • Axel Kohlmeyer (Tue Sep 04 2007 - 09:18:34 CDT)
  • Gianluca Santarossa (Tue Sep 04 2007 - 09:17:45 CDT)
• advanced selections (or explicit pair list) for measure gofr ?
  • Axel Kohlmeyer (Fri Oct 24 2008 - 10:31:13 CDT)
  • Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
• Advantages of new RTX/Turing NVidia cards?
  • Pawel Kedzierski (Thu Oct 11 2018 - 06:13:47 CDT)
  • John Stone (Wed Oct 10 2018 - 10:21:13 CDT)
  • Pawel Kedzierski (Wed Oct 10 2018 - 03:55:13 CDT)
• advice for a PCI video card on redhat
  • John Stone (Wed May 28 2003 - 15:49:07 CDT)
• Affordable 3D stereo.
  • John Stone (Wed Jan 31 2018 - 11:17:54 CST)
  • sperez14_at_us.es (Tue Jan 30 2018 - 06:12:02 CST)
• again :resid of water that is H bonded
  • nahren manuel (Mon Aug 25 2008 - 21:55:40 CDT)
• again about average strutcure
  • li (Tue Mar 18 2008 - 17:31:26 CDT)
• Aggregation analysis
  • John Stone (Wed Aug 29 2007 - 00:21:48 CDT)
  • zhenlong li (Thu Aug 23 2007 - 10:07:49 CDT)
• Alascan plugin error
  • Brandon Havranek (Fri Aug 13 2021 - 23:23:25 CDT)
• Alascan, psfgen errors
  • Matthew Kenney (Thu Aug 02 2018 - 17:19:16 CDT)
• alchemical transformations
  • Chiara Cardelli (Tue Apr 22 2014 - 04:19:29 CDT)
  • Axel Kohlmeyer (Mon Apr 21 2014 - 11:18:16 CDT)
  • Josh Vermaas (Mon Apr 21 2014 - 10:24:57 CDT)
  • Chiara Cardelli (Mon Apr 21 2014 - 04:21:58 CDT)
  • Fotis Baltoumas (Mon Apr 21 2014 - 03:36:26 CDT)
  • Chiara Cardelli (Sun Apr 20 2014 - 13:19:41 CDT)
• algorithm for command *within*
  • Thomas Evangelidis (Fri Jul 17 2009 - 03:30:45 CDT)
  • BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
  • John Stone (Thu Jul 16 2009 - 11:32:50 CDT)
• algorithm for finding center of mass of the side chains in the protein
  • Ramya Gamini (Fri Aug 29 2008 - 14:28:15 CDT)
  • aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
• Algorithm for RMSD and alignment
  • Ignacio Fernández Galván (Tue Oct 26 2010 - 11:47:18 CDT)
• Alias histidine residue
  • Roman Petrenko (Sat Sep 13 2008 - 22:04:46 CDT)
  • Roman Petrenko (Sat Sep 13 2008 - 22:07:46 CDT)
  • Axel Kohlmeyer (Sat Sep 13 2008 - 09:09:31 CDT)
  • Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
• Align a PORTION of several structures
  • Shirley Li (Fri Oct 15 2004 - 09:33:00 CDT)
  • Justin Gullingsrud (Thu Oct 14 2004 - 09:54:45 CDT)
  • Shirley Li (Wed Oct 13 2004 - 18:05:01 CDT)
• Align a trajectory
  • Axel Kohlmeyer (Thu Mar 19 2015 - 10:08:57 CDT)
  • Ryan McGreevy (Thu Mar 19 2015 - 10:29:00 CDT)
  • Kevin C Chan (Thu Mar 19 2015 - 07:35:06 CDT)
• align and superimpose crd structures.
  • Margaret Shun Cheung (Wed Jun 21 2006 - 17:16:41 CDT)
  • John Stone (Wed Jun 21 2006 - 17:03:38 CDT)
  • Margaret Shun Cheung (Wed Jun 21 2006 - 17:02:10 CDT)
  • Margaret Shun Cheung (Wed Jun 21 2006 - 13:47:56 CDT)
  • John Stone (Wed Jun 21 2006 - 13:34:48 CDT)
  • John Stone (Wed Jun 21 2006 - 13:32:33 CDT)
  • Margaret Shun Cheung (Wed Jun 21 2006 - 09:12:37 CDT)
• align axes
  • Toni Giorgino (Thu Jun 23 2011 - 14:50:14 CDT)
  • Axel Kohlmeyer (Thu Jun 23 2011 - 13:42:44 CDT)
  • Adrian Roitberg (Wed Jun 22 2011 - 14:17:50 CDT)
• align electron density map onto simulated structure (with different center)
  • John Stone (Tue Apr 17 2012 - 00:13:31 CDT)
  • Magnus Andersson (Sun Apr 15 2012 - 18:42:21 CDT)
• Align membrane
  • Ale Gomez (Fri Oct 16 2009 - 19:18:41 CDT)
  • Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
  • Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
• Align mistake
  • John Stone (Tue May 19 2009 - 20:32:52 CDT)
  • Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
• align molecules using "anchor" atoms
  • Xing (Tue Sep 15 2015 - 22:10:11 CDT)
  • Axel Kohlmeyer (Tue Sep 15 2015 - 15:41:30 CDT)
  • Xing (Tue Sep 15 2015 - 12:08:03 CDT)
  • John Stone (Tue Sep 15 2015 - 10:58:02 CDT)
  • Xing (Tue Sep 15 2015 - 10:34:25 CDT)
• Align only translation not rotation
  • Ajasja LjubetiÄ� (Tue Sep 15 2015 - 03:20:41 CDT)
  • Simon Dürr (Mon Sep 14 2015 - 10:16:08 CDT)
• Align protein with different number of aminoacid
  • Luis Gracia (Thu Feb 10 2005 - 22:35:16 CST)
  • Eduard Schreiner (Fri Feb 11 2005 - 04:42:24 CST)
  • matteo.pennestri_at_virgilio.it (Thu Feb 10 2005 - 16:42:50 CST)
• Align specific residues of two structures
  • Ivan Gregoretti (Fri Mar 28 2014 - 16:57:16 CDT)
  • Hailin Huang (Fri Mar 28 2014 - 15:37:37 CDT)
• align two molecules with index
  • Zhenyu Lu (Thu Apr 28 2005 - 17:42:23 CDT)
• Aligning a dcd file of a protein consisting two chains
  • Vermaas, Joshua (Tue Aug 09 2016 - 11:42:07 CDT)
  • Vermaas, Joshua (Thu Aug 04 2016 - 11:06:56 CDT)
  • kim, stephanie S. (Thu Aug 04 2016 - 09:02:38 CDT)
  • Vermaas, Joshua (Wed Aug 03 2016 - 13:24:32 CDT)
  • kim, stephanie S. (Wed Aug 03 2016 - 11:31:37 CDT)
• Aligning Desmond Trajectories again
  • Irene Newhouse (Mon Mar 15 2010 - 15:05:46 CDT)
• aligning molecules with different number of atoms
  • Leandro Martínez (Mon Feb 12 2007 - 12:39:29 CST)
  • Leonardo Trabuco (Mon Feb 12 2007 - 12:05:28 CST)
  • John Stone (Mon Feb 12 2007 - 12:01:58 CST)
  • JC Gumbart (Mon Feb 12 2007 - 11:58:12 CST)
  • namd vmd (Mon Feb 12 2007 - 11:53:49 CST)
• aligning molecules with modes from ProDy
  • L. Signorile (Thu Oct 13 2016 - 06:32:24 CDT)
• aligning multiple trajectories to a single .pdb file
  • andrew ritchie (Wed May 18 2011 - 13:30:54 CDT)
• Aligning of ions and DNA
  • angad sharma (Sun Jan 08 2023 - 03:00:11 CST)
• aligning one molecule
  • Himanshu Khandelia (Wed Feb 14 2007 - 17:30:18 CST)
  • s.schweizer_at_dkfz-heidelberg.de (Wed Feb 14 2007 - 08:47:41 CST)
• Aligning portions of proteins
  • Anjela Manandhar (Sun Mar 01 2015 - 20:06:02 CST)
• aligning protein based on one helix of protein
  • John Stone (Wed Oct 31 2007 - 17:25:50 CDT)
  • maria goranovic (Wed Oct 31 2007 - 13:14:12 CDT)
  • maria goranovic (Wed Oct 31 2007 - 08:48:29 CDT)
• Aligning structures
  • Marcos Sotomayor (Fri Mar 10 2006 - 10:19:43 CST)
  • Richard Wood (Thu Mar 09 2006 - 21:20:45 CST)
• aligning trajectories
  • maria goranovic (Tue Nov 24 2009 - 04:22:54 CST)
• Aligning two proteins of varying atom numbers
  • ban arn (Sun May 22 2011 - 16:25:11 CDT)
  • Gianluca Interlandi (Fri May 20 2011 - 11:26:25 CDT)
  • ban arn (Fri May 20 2011 - 09:04:53 CDT)
  • ban arn (Fri May 20 2011 - 06:37:47 CDT)
  • Axel Kohlmeyer (Fri May 20 2011 - 05:47:18 CDT)
  • ban arn (Fri May 20 2011 - 04:23:12 CDT)
  • Eduard Schreiner (Thu May 19 2011 - 12:07:00 CDT)
  • ban arn (Thu May 19 2011 - 11:37:40 CDT)
  • Joseph Bylund (Thu May 19 2011 - 11:31:52 CDT)
  • Axel Kohlmeyer (Thu May 19 2011 - 11:17:37 CDT)
  • ban arn (Thu May 19 2011 - 10:43:10 CDT)
• aligning- on top of the bilayer
  • lara lara (Wed Oct 06 2010 - 00:11:00 CDT)
• alignment
  • Axel Kohlmeyer (Fri Jun 19 2009 - 10:56:09 CDT)
  • Alison Grinthal (Fri Jun 19 2009 - 09:45:28 CDT)
  • Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
  • Giovanni Bellesia (Mon Nov 05 2007 - 12:10:58 CST)
  • Zhaochuan Shen (Mon Nov 05 2007 - 11:41:52 CST)
  • John Stone (Sun Nov 04 2007 - 13:53:06 CST)
  • John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
  • Zhaochuan Shen (Thu Nov 01 2007 - 16:52:12 CDT)
• Alignment and RMSD calculation
  • Tran, Tran (Tue Oct 04 2016 - 11:12:15 CDT)
  • John Stone (Mon Oct 03 2016 - 16:02:47 CDT)
  • Ashar Malik (Tue Sep 27 2016 - 21:46:17 CDT)
  • Tran, Tran (Tue Sep 27 2016 - 20:18:31 CDT)
• alignment and rmsd fit
  • John Stone (Fri Nov 08 2002 - 17:00:06 CST)
  • Marcela Madrid (Fri Nov 08 2002 - 16:16:38 CST)
• Alignment issues
  • Ashar Malik (Wed Jan 24 2018 - 08:02:02 CST)
  • Heather Carson (Wed Jan 24 2018 - 07:18:44 CST)
• alignment of two the same structures
  • Tristan Croll (Tue Dec 08 2015 - 00:59:06 CST)
  • Marta Wisniewska (Fri Dec 04 2015 - 11:45:39 CST)
• alignment problem
  • Markus K. Dahlgren (Mon Oct 10 2011 - 10:29:40 CDT)
• alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction?
  • maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
• Alignment Python
  • Per Jr. Greisen (Fri Aug 11 2006 - 05:19:15 CDT)
• Alignment with RMSD trajectory tool
  • Ashar Malik (Tue May 29 2018 - 21:00:08 CDT)
  • Gulce Kalyoncu (Tue May 29 2018 - 20:42:15 CDT)
• aligntool
  • Barry Isralewitz (Thu Feb 13 2003 - 19:33:38 CST)
  • Ioana Cozmuta (Thu Feb 13 2003 - 17:43:44 CST)
• aligntool docs?...
  • John Stone (Tue Jan 21 2003 - 15:36:56 CST)
  • Joshua Speidel (Tue Jan 21 2003 - 15:03:36 CST)
• All that I never took the time to ask about VMD ...
  • John Stone (Fri Sep 06 2002 - 14:51:50 CDT)
  • Marc Baaden (Sat Aug 31 2002 - 07:14:29 CDT)
• all within selection
  • Guanglei Cui (Thu Aug 11 2005 - 12:32:32 CDT)
  • John Stone (Thu Aug 11 2005 - 11:56:29 CDT)
  • Guanglei Cui (Thu Aug 11 2005 - 10:55:39 CDT)
• allowing negative 'resid' numbers in selection strings
  • Vlad Cojocaru (Fri Jan 08 2010 - 09:10:02 CST)
  • Axel Kohlmeyer (Fri Jan 08 2010 - 08:49:01 CST)
  • Vlad Cojocaru (Fri Jan 08 2010 - 07:56:16 CST)
• Alpha to beta conversion
  • Giacomo Fiorin (Wed May 15 2019 - 08:45:46 CDT)
  • Kalyanashis Jana (Wed May 15 2019 - 04:17:08 CDT)
• alpha-quartz with hydrogen bond
  • Suu Kyi, Myat Noe (Tue May 29 2018 - 10:46:49 CDT)
• Alpha-RMSD
  • Jevgenij Raskatov (Thu May 28 2015 - 17:31:48 CDT)
  • Barry Isralewitz (Thu May 28 2015 - 17:29:54 CDT)
  • Ashar Malik (Thu May 28 2015 - 17:16:23 CDT)
  • Ashar Malik (Thu May 28 2015 - 17:14:24 CDT)
  • Ashar Malik (Wed May 27 2015 - 21:54:20 CDT)
  • Jevgenij Raskatov (Wed May 27 2015 - 20:25:27 CDT)
• alter crosshair appearance
  • Barry Isralewitz (Fri Jun 22 2018 - 13:18:31 CDT)
  • John Stone (Fri Jun 22 2018 - 03:15:09 CDT)
  • Daniel Strahs (Thu May 24 2018 - 12:48:30 CDT)
• Altering Definition of Molecular Coloring Method
  • Axel Kohlmeyer (Tue Aug 01 2006 - 07:29:44 CDT)
  • Adrian Koh (Mon Jul 31 2006 - 23:18:19 CDT)
  • Peter Freddolino (Mon Jul 31 2006 - 09:05:16 CDT)
  • Adrian Koh (Mon Jul 31 2006 - 05:08:56 CDT)
• Altering extrabonds force constant during MD
  • Bryan Roessler (Tue Apr 15 2014 - 09:52:18 CDT)
  • Axel Kohlmeyer (Mon Apr 14 2014 - 16:56:59 CDT)
  • Bryan Roessler (Mon Apr 14 2014 - 16:11:28 CDT)
• Altering water sphere and charmm type
  • shgnwgn_at_eden.rutgers.edu (Mon Jul 25 2005 - 10:50:50 CDT)
• alternative display mode of HBonds
  • John Stone (Tue Apr 04 2006 - 14:46:46 CDT)
  • Jean Richelle (Tue Apr 04 2006 - 09:51:18 CDT)
• AMBER (old ?) nucleic acids names not recognised
  • Teletchéa Stéphane (Fri Nov 21 2003 - 03:57:04 CST)
• Amber calculated structure(PDB) visualization in pymol vs chimera vs vmd
  • V. Kumar (Wed Dec 02 2015 - 17:16:46 CST)
• AMBER coordinates with periodic box
  • John Stone (Wed Jul 20 2011 - 13:41:23 CDT)
  • Guenegou, Guillaume [ORDFR] (Tue Jul 19 2011 - 08:18:44 CDT)
• amber generated netcdf trajectories
  • John Stone (Tue Apr 07 2020 - 13:23:14 CDT)
  • Vlad Cojocaru (Tue Apr 07 2020 - 13:11:39 CDT)
  • Vlad Cojocaru (Mon Jan 06 2020 - 14:45:40 CST)
  • John Stone (Mon Jan 06 2020 - 14:20:06 CST)
  • John Stone (Thu Dec 19 2019 - 08:22:10 CST)
  • Luthaf (Thu Dec 19 2019 - 07:09:50 CST)
  • Vlad Cojocaru (Thu Dec 19 2019 - 03:46:08 CST)
  • John Stone (Wed Dec 18 2019 - 10:19:26 CST)
  • Vlad Cojocaru (Wed Dec 18 2019 - 07:25:11 CST)
• AMBER parmfiles
  • John Stone (Mon Mar 17 2003 - 10:06:11 CST)
  • Patrick Ladam (Mon Mar 17 2003 - 05:24:31 CST)
• Amber patches for Auto PSF generator
  • Peter Freddolino (Wed Jun 27 2007 - 12:04:09 CDT)
  • Bob Johnson (Wed Jun 27 2007 - 11:55:44 CDT)
• AMBER pbsa electrostatic potential map
  • John Stone (Tue Apr 19 2005 - 21:16:05 CDT)
  • Mengjuei Hsieh (Tue Apr 19 2005 - 18:05:49 CDT)
  • John Stone (Tue Apr 19 2005 - 16:11:51 CDT)
  • John Stone (Tue Apr 19 2005 - 10:22:21 CDT)
  • Alexander Spaar (Tue Apr 19 2005 - 03:58:55 CDT)
  • John Stone (Mon Apr 18 2005 - 10:13:39 CDT)
  • Mengjuei Hsieh (Fri Apr 15 2005 - 20:09:09 CDT)
• Amber periodic images
  • John Stone (Thu Apr 29 2004 - 13:52:17 CDT)
  • John Stone (Thu Apr 29 2004 - 13:49:52 CDT)
  • Jim Shepherd (Thu Apr 29 2004 - 13:41:23 CDT)
  • John Stone (Thu Apr 29 2004 - 10:56:26 CDT)
  • Xiang, Tian-Xiang (Wed Apr 28 2004 - 10:25:09 CDT)
• AMBER prmtop and traj to pqr - radii error
  • Jesper Soerensen (Mon Oct 17 2011 - 18:58:53 CDT)
• Amber prmtop/inpcrd files
  • John Stone (Thu Aug 28 2003 - 15:46:52 CDT)
  • John Stone (Thu Jul 31 2003 - 18:01:25 CDT)
  • Teletchéa Stéphane (Thu Jul 31 2003 - 15:44:32 CDT)
  • caldwell_at_heimdal.compchem.ucsf.edu (Thu Jul 31 2003 - 14:22:12 CDT)
  • Teletchéa Stéphane (Thu Jul 31 2003 - 12:49:27 CDT)
  • John Stone (Thu Jul 31 2003 - 11:44:38 CDT)
  • Anshul Shah (Mon Jul 28 2003 - 17:17:29 CDT)
  • Anshul Shah (Mon Jul 28 2003 - 15:45:05 CDT)
• Amber rst7 not loading
  • Sophia Hirakis (Wed Jun 20 2018 - 20:25:28 CDT)
• amber traj to pqr - radii error
  • John Stone (Thu Oct 13 2011 - 10:25:45 CDT)
  • Jesper Soerensen (Mon Oct 10 2011 - 15:41:54 CDT)
  • Axel Kohlmeyer (Mon Oct 10 2011 - 13:40:51 CDT)
  • Jesper Soerensen (Mon Oct 10 2011 - 12:42:30 CDT)
• amber trajectory
  • John Stone (Wed Jun 18 2003 - 09:55:39 CDT)
  • Oscar Moran (Wed Jun 18 2003 - 03:17:58 CDT)
  • John Stone (Tue Dec 17 2002 - 23:44:51 CST)
  • Ioana Cozmuta (Tue Dec 17 2002 - 23:15:55 CST)
• Amber trajectory loading
  • John Stone (Wed Apr 21 2004 - 13:22:49 CDT)
  • Xiang, Tian-Xiang (Wed Apr 21 2004 - 10:03:48 CDT)
• AMBER trajectory visualization
  • John Stone (Sun Dec 04 2016 - 21:25:34 CST)
  • James Kress (Sun Dec 04 2016 - 20:40:39 CST)
  • John Stone (Sat Dec 03 2016 - 22:48:02 CST)
  • James Kress (Sat Dec 03 2016 - 20:33:16 CST)
• Amber visualization problem
  • John Stone (Thu Feb 02 2017 - 23:53:12 CST)
  • Hannes Loeffler (Wed Feb 01 2017 - 03:09:52 CST)
  • Radak, Brian K (Tue Jan 31 2017 - 14:05:37 CST)
  • Albert (Tue Jan 31 2017 - 10:09:50 CST)
• AMBER6 format
  • MengJuei Hsieh (Tue Nov 19 2002 - 16:02:55 CST)
  • John Stone (Mon Nov 18 2002 - 00:20:19 CST)
  • MengJuei Hsieh (Mon Nov 04 2002 - 17:22:44 CST)
  • John Stone (Mon Nov 04 2002 - 14:56:12 CST)
  • MengJuei Hsieh (Mon Nov 04 2002 - 14:39:52 CST)
• AMBER9 netcdf trajectory loading
  • John Stone (Wed Jul 26 2006 - 13:27:37 CDT)
  • Fabian Boes (Fri Jul 21 2006 - 08:00:30 CDT)
• Ambient occlusion / Electrostatic surfaces
  • John Stone (Thu Dec 31 2020 - 13:44:41 CST)
  • John Stone (Fri Nov 20 2020 - 14:19:24 CST)
  • John Stone (Fri Nov 20 2020 - 12:58:14 CST)
  • Lothar Esser (Fri Nov 20 2020 - 12:30:57 CST)
• Ambient/direct light missing after adding Glow lights to a tachyon scene with glow_lights.tcl
  • Oliver Grant (Fri Oct 19 2018 - 10:07:41 CDT)
  • John Stone (Fri Oct 19 2018 - 08:37:46 CDT)
  • Oliver Grant (Fri Oct 19 2018 - 06:04:37 CDT)
• AMD vs. nvidia support
  • Axel Kohlmeyer (Thu Dec 12 2013 - 04:32:46 CST)
  • Bogdan Costescu (Thu Dec 12 2013 - 04:16:48 CST)
  • Axel Kohlmeyer (Thu Dec 12 2013 - 00:04:44 CST)
  • Bennion, Brian (Wed Dec 11 2013 - 12:50:36 CST)
  • Jérôme Hénin (Wed Dec 11 2013 - 11:31:12 CST)
• AMD64 vmd installation problems
  • John Stone (Wed May 31 2006 - 10:38:54 CDT)
  • simon whitehead (Wed May 31 2006 - 04:41:36 CDT)
• amd64/nvidiaFX1100/linux crash
  • David A. Horita (Tue Oct 05 2004 - 17:19:49 CDT)
  • John Stone (Tue Oct 05 2004 - 16:50:30 CDT)
  • David A. Horita (Tue Oct 05 2004 - 16:00:07 CDT)
• amidated C-terminus and pyroglutamate
  • Han Choe (Sat Jan 31 2004 - 04:01:05 CST)
• Amide peptide capping group lost in VMD
  • Neena Susan Eappen (Sat May 11 2019 - 09:05:49 CDT)
  • Neena Susan Eappen (Wed May 01 2019 - 16:54:29 CDT)
• amino acid mutation plugin
  • geetha9999_at_aol.com (Thu Feb 11 2010 - 13:37:08 CST)
• aminoacid mutation
  • Jim Phillips (Tue Oct 28 2003 - 11:08:05 CST)
  • Justin Gullingsrud (Tue Oct 28 2003 - 10:55:42 CST)
  • Brian Bennion (Tue Oct 28 2003 - 10:22:38 CST)
  • Y U Sasidhar (Mon Oct 27 2003 - 22:25:00 CST)
  • Ioana Cozmuta (Mon Oct 27 2003 - 18:23:58 CST)
• Aminoacid selection
  • Mert Gür (Sun Mar 24 2013 - 17:54:42 CDT)
  • Juan Antonio Raygoza Garay (Sun Mar 24 2013 - 16:51:02 CDT)
• ammonium sulfate ions in system
  • Bennion, Brian (Fri Aug 15 2014 - 15:51:52 CDT)
• Amorphous Structure code or builder
  • Rawan Al Nsour (Thu Feb 28 2013 - 14:47:14 CST)
• Amorphous Structure code or builder for non-programmer
  • Rawan Al Nsour (Mon Mar 18 2013 - 15:20:05 CDT)
• An APBS problem
  • John Stone (Fri Jan 27 2006 - 13:56:03 CST)
  • Zhiyong Zhang (Thu Jan 26 2006 - 20:38:15 CST)
• an arrow for a dipole
  • John Stone (Wed Jan 28 2004 - 18:26:45 CST)
  • Marcelo A. Carignano (Wed Jan 28 2004 - 13:30:41 CST)
• an continuous increased pattern for RMSD curve after long run
  • Vermaas, Joshua (Fri Oct 06 2017 - 10:58:48 CDT)
  • Vermaas, Joshua (Thu Oct 05 2017 - 11:47:11 CDT)
  • Vermaas, Joshua (Tue Oct 03 2017 - 14:49:16 CDT)
  • fatehi_at_eng.uk.ac.ir (Tue Oct 03 2017 - 13:08:44 CDT)
  • John Stone (Tue Oct 03 2017 - 13:20:57 CDT)
• an inconsistance between psf file and coor file after equilibration
  • John Stone (Tue May 24 2005 - 11:12:22 CDT)
  • Baoqiang Cao (Sun May 22 2005 - 22:28:16 CDT)
• an old question
  • John Stone (Wed Apr 11 2012 - 13:57:49 CDT)
  • PAUL NEWMAN (Tue Apr 10 2012 - 16:22:09 CDT)
  • Albert (Tue Apr 10 2012 - 14:23:16 CDT)
  • Albert (Tue Apr 10 2012 - 00:08:23 CDT)
  • John Stone (Tue Apr 10 2012 - 14:11:51 CDT)
  • John Stone (Mon Apr 09 2012 - 23:49:11 CDT)
  • Albert (Mon Apr 09 2012 - 23:36:16 CDT)
  • John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
  • Albert (Sat Apr 07 2012 - 00:28:29 CDT)
• an old...old..old..question
  • Axel Kohlmeyer (Mon Jan 29 2007 - 18:33:14 CST)
  • Tsu-Fan Cheng (Mon Jan 29 2007 - 16:24:16 CST)
• An remark on PoV output
  • dstrahs_at_pace.edu (Mon May 14 2007 - 17:52:17 CDT)
  • John Stone (Mon May 14 2007 - 12:57:26 CDT)
  • Szymon Zietkiewicz (Sat May 12 2007 - 06:45:01 CDT)
• Anaglyph rendering problem
  • Ajasja LjubetiÄ� (Mon Sep 13 2010 - 08:55:39 CDT)
  • John Stone (Mon Sep 13 2010 - 08:43:16 CDT)
  • Ajasja LjubetiÄ� (Mon Sep 13 2010 - 03:50:27 CDT)
• Anaglyph stereo with other colors
  • Luis M. Sánchez (Fri May 04 2012 - 09:45:34 CDT)
  • John Stone (Mon Apr 23 2012 - 15:49:37 CDT)
  • John Stone (Mon Apr 23 2012 - 15:40:19 CDT)
  • Luis M. Sánchez (Sat Apr 21 2012 - 16:56:32 CDT)
  • flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
  • John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
  • Luis M. Sánchez (Fri Apr 20 2012 - 08:09:19 CDT)
• analysing big trajectories
  • Oliver Beckstein (Wed Nov 21 2007 - 19:13:32 CST)
  • Thomas Evangelidis (Tue Nov 20 2007 - 18:09:26 CST)
  • John Stone (Tue Nov 20 2007 - 16:26:34 CST)
  • John Stone (Tue Nov 20 2007 - 14:41:35 CST)
  • Oliver Beckstein (Tue Nov 20 2007 - 14:28:45 CST)
• analysing big trajectories (fwd)
  • Oliver Beckstein (Wed Nov 21 2007 - 19:05:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:39:03 CST)
  • John Stone (Tue Nov 20 2007 - 18:32:23 CST)
  • L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:03:25 CST)
  • John Stone (Tue Nov 20 2007 - 17:30:59 CST)
• Analysis
  • Anthony Cruz (Thu Mar 23 2006 - 14:01:45 CST)
  • John Stone (Thu Mar 23 2006 - 10:12:01 CST)
  • Anthony Cruz (Thu Mar 23 2006 - 10:20:13 CST)
  • Anthony Cruz (Mon Mar 20 2006 - 12:33:53 CST)
  • John Stone (Wed Mar 08 2006 - 10:55:49 CST)
  • Anthony Cruz (Wed Mar 08 2006 - 13:37:21 CST)
• Analysis of DLG filles
  • Jeff Saxon (Sat Nov 07 2020 - 03:55:58 CST)
  • Josh Vermaas (Fri Nov 06 2020 - 20:10:53 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 10:53:32 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 09:52:57 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 07:40:58 CST)
  • Paolo Conflitti (Fri Nov 06 2020 - 07:26:01 CST)
  • Jeff Saxon (Fri Nov 06 2020 - 06:27:51 CST)
  • Paolo Conflitti (Fri Nov 06 2020 - 03:00:43 CST)
  • Jeff Saxon (Thu Nov 05 2020 - 16:44:03 CST)
  • Josh Vermaas (Thu Nov 05 2020 - 14:24:19 CST)
  • John Stone (Thu Nov 05 2020 - 10:49:39 CST)
  • Jeff Saxon (Thu Nov 05 2020 - 10:45:19 CST)
• analysis of energy with water excluded from dcd file
  • John Stone (Sun May 23 2004 - 15:46:26 CDT)
  • li (Mon May 17 2004 - 01:28:40 CDT)
• analysis script causes vmd to crash
  • Axel Kohlmeyer (Thu Feb 02 2006 - 22:03:15 CST)
  • Eliud Oloo (Thu Feb 02 2006 - 19:26:35 CST)
• analysis scripts: VMD text /batch mode
  • Justin Gullingsrud (Tue Aug 10 2004 - 13:31:01 CDT)
  • John Stone (Tue Aug 10 2004 - 13:03:22 CDT)
  • Vani Krishna (Tue Aug 10 2004 - 11:46:12 CDT)
• Analyzing a 10ns simulation on Mac aborts
  • John Stone (Thu Dec 29 2011 - 22:49:32 CST)
  • Peter C. Lai (Wed Dec 07 2011 - 01:47:12 CST)
  • Anthony Rey (Tue Dec 06 2011 - 23:25:17 CST)
• analyzing amino acids forming pore constrictions in a channel protein
  • Bassam Haddad (Tue Jun 02 2020 - 12:33:03 CDT)
  • Bassam Haddad (Tue Jun 02 2020 - 11:44:55 CDT)
  • Yogesh Sharma (Tue Jun 02 2020 - 04:46:41 CDT)
• ANALYZING DESMOND OUTPUT IN VMD
  • Axel Kohlmeyer (Sun Mar 20 2011 - 15:49:12 CDT)
  • shome sankar bhunia (Sun Mar 20 2011 - 03:55:58 CDT)
• analyzing gromacs trajectories with VMD
  • Axel Kohlmeyer (Sat Jun 07 2014 - 05:36:12 CDT)
  • sunyeping (Sat Jun 07 2014 - 04:47:59 CDT)
• analyzing gromacs trajectory (.trr) with VMD
  • Axel Kohlmeyer (Tue Mar 09 2010 - 04:47:13 CST)
  • politr_at_huji.ac.il (Tue Mar 09 2010 - 03:48:24 CST)
• Analyzing pdb files remotely with VMD installed locally
  • Jindal Shah (Wed Sep 07 2005 - 20:09:32 CDT)
  • John Stone (Wed Sep 07 2005 - 16:14:26 CDT)
  • Jindal Shah (Wed Sep 07 2005 - 11:54:00 CDT)
  • Michel Espinoza-Fonseca (Wed Sep 07 2005 - 11:48:02 CDT)
  • John Stone (Wed Sep 07 2005 - 11:33:09 CDT)
  • Jindal Shah (Wed Sep 07 2005 - 11:25:50 CDT)
• Analyzing results of simulation done by gromacs
  • Ashar Malik (Sat Jan 14 2017 - 06:15:12 CST)
  • maria khan (Sat Jan 14 2017 - 04:32:11 CST)
  • John Stone (Fri Jan 13 2017 - 23:28:26 CST)
  • Ashar Malik (Fri Jan 13 2017 - 16:41:27 CST)
  • maria khan (Fri Jan 13 2017 - 15:44:31 CST)
• Andres Morales sent you a little gift
  • Andres Morales (Sun Apr 11 2010 - 20:33:52 CDT)
• Android support
  • John Stone (Sun Mar 06 2011 - 15:44:09 CST)
  • John Stone (Sun Mar 06 2011 - 15:28:46 CST)
  • John Stone (Sun Mar 06 2011 - 13:39:44 CST)
  • Dow Hurst (Sun Mar 06 2011 - 13:55:02 CST)
  • Axel Kohlmeyer (Sun Mar 06 2011 - 12:38:38 CST)
  • Dow Hurst (Sun Mar 06 2011 - 11:24:15 CST)
• Angle between a vector and a plane
  • Diego Gomes (Thu Sep 21 2023 - 12:50:19 CDT)
  • Castro Martinez, Camila (Wed Sep 20 2023 - 08:42:24 CDT)
  • Vermaas, Josh (Wed Sep 20 2023 - 08:06:25 CDT)
  • Vermaas, Josh (Wed Sep 20 2023 - 06:54:23 CDT)
  • Ashar Malik (Wed Sep 20 2023 - 04:13:25 CDT)
  • Castro Martinez, Camila (Wed Sep 20 2023 - 02:53:52 CDT)
• Angle between molecular dipole and nanotube axis.
  • Yogesh Sharma (Mon Nov 29 2021 - 12:51:18 CST)
  • John Stone (Tue Nov 09 2021 - 16:14:49 CST)
  • Yogesh Sharma (Mon Nov 08 2021 - 03:19:45 CST)
• angle between protein domains:
  • PARMINDER MANKOO (Tue Jun 26 2007 - 15:46:02 CDT)
• angle between two domains connected at a hinge
  • sajad falsafi (Fri Jul 15 2011 - 11:51:28 CDT)
  • maria goranovic (Fri Jul 15 2011 - 08:35:52 CDT)
• angle between two vectors
  • Luis Gracia (Wed Jan 12 2005 - 12:31:58 CST)
  • John Stone (Tue Jan 11 2005 - 19:05:43 CST)
  • Ekta Khurana (Tue Jan 11 2005 - 18:56:54 CST)
• angle calculation trajectory
  • sajad falsafi (Wed Oct 19 2011 - 01:11:39 CDT)
  • Axel Kohlmeyer (Tue Oct 18 2011 - 13:22:15 CDT)
  • Peyman Z.Moghadam (Tue Oct 18 2011 - 12:28:16 CDT)
• Angle Cutoff variable for Hydrogen Bonds
  • Josh Vermaas (Thu Aug 18 2022 - 08:29:35 CDT)
  • David Carrasco de Busturia (Thu Aug 18 2022 - 05:41:30 CDT)
• Angle parameters
  • Hideyuki Miyatake (Sat Dec 11 2021 - 22:59:50 CST)
• angles
  • John Stone (Thu Jul 29 2004 - 10:53:38 CDT)
  • pinisetty dinesh (Wed Jul 28 2004 - 21:11:12 CDT)
• Angles and dihedral generation
  • Cesar Luis Avila (Tue Sep 05 2006 - 08:15:18 CDT)
  • Jim Phillips (Mon Sep 04 2006 - 16:44:44 CDT)
  • Cesar Luis Avila (Mon Sep 04 2006 - 10:00:35 CDT)
  • Jim Phillips (Sat Sep 02 2006 - 15:25:12 CDT)
  • Cesar Luis Avila (Fri Sep 01 2006 - 20:02:36 CDT)
• ANGLES and DIHEDRALS ... location in VMD code?
  • Javier Goicochea (Mon Feb 02 2009 - 08:33:15 CST)
  • John Stone (Fri Jan 16 2009 - 09:31:01 CST)
  • Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
• angles and dihedrals in .psf file
  • Axel Kohlmeyer (Thu May 21 2009 - 11:28:15 CDT)
  • KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
• Angles between two groups of atoms
  • Enzo Claudino (Wed Feb 03 2021 - 12:19:00 CST)
• Angles generated by AutoPSF?
  • Smith, Harper E. (Mon May 17 2021 - 14:57:28 CDT)
  • Pawel Kedzierski (Mon May 17 2021 - 14:50:37 CDT)
  • Vermaas, Josh (Mon May 17 2021 - 14:23:20 CDT)
  • Smith, Harper E. (Mon May 17 2021 - 12:15:15 CDT)
• Angles in psf file
  • KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
• Angular energy term
  • Giacomo Fiorin (Thu Mar 05 2020 - 12:23:00 CST)
  • Paula Mihaljevic-Juric (Thu Mar 05 2020 - 08:06:15 CST)
• Animate data
  • Nguyen Hoang Phuong (Fri Apr 26 2002 - 12:31:38 CDT)
• animate delete
  • John Stone (Fri Jul 11 2003 - 10:20:11 CDT)
  • Hannes Loeffler (Fri Jul 11 2003 - 01:37:45 CDT)
• animate error handling
  • John Stone (Fri Dec 09 2005 - 09:50:32 CST)
  • Jérôme Hénin (Fri Dec 09 2005 - 05:04:52 CST)
• Animate Molekul
  • Maxim Belkin (Tue Apr 05 2016 - 10:24:47 CDT)
  • Christian Wohlschlager (Tue Apr 05 2016 - 08:12:17 CDT)
• animate read and write
  • A D (Wed Apr 22 2009 - 15:36:00 CDT)
  • John Stone (Wed Apr 22 2009 - 15:42:24 CDT)
• animate read command
  • Jim Pfaendtner (Tue Feb 05 2008 - 13:55:29 CST)
  • John Stone (Tue Feb 05 2008 - 14:16:00 CST)
• Animate the "beta" field
  • John Stone (Mon Jun 21 2004 - 14:17:38 CDT)
  • emmanuel.levy1_at_free.fr (Sat May 29 2004 - 14:05:16 CDT)
• animate transparency
  • Axel Kohlmeyer (Fri Jan 06 2006 - 07:07:43 CST)
  • Yu Chen (Thu Jan 05 2006 - 15:07:37 CST)
• animate with varying atom numbers
  • Axel Kohlmeyer (Sat Jun 10 2006 - 04:55:47 CDT)
  • Rene (Fri Jun 09 2006 - 12:53:59 CDT)
• animate write of a selection in Linux version of VMD
  • Pawel Weronski (Wed Jan 31 2007 - 16:24:02 CST)
  • John Stone (Wed Jan 31 2007 - 16:10:46 CST)
  • Pawel Weronski (Wed Jan 31 2007 - 15:54:25 CST)
• animated colors, trajectories, etc..
  • John Stone (Tue Feb 19 2002 - 18:41:02 CST)
• animated gif
  • Peter Freddolino (Mon Oct 20 2008 - 07:01:18 CDT)
  • Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
• animated gif option in VMD for Windows.
  • John Stone (Thu Aug 24 2006 - 15:00:01 CDT)
  • Axel Kohlmeyer (Thu Aug 24 2006 - 14:45:53 CDT)
  • Ravinder Abrol (Thu Aug 24 2006 - 14:14:58 CDT)
• animating an iso-surface
  • Axel Kohlmeyer (Wed May 26 2004 - 15:48:49 CDT)
  • Randall Hall (Wed May 26 2004 - 13:18:03 CDT)
• animating drawn objects
  • John Stone (Thu Apr 01 2004 - 13:26:17 CST)
  • Vlad Cojocaru (Thu Apr 01 2004 - 10:20:56 CST)
• Animating Trajectories/NAMD Output files
  • Barry Isralewitz (Wed May 08 2002 - 11:37:05 CDT)
  • Storr, Mark (Wed May 08 2002 - 11:16:23 CDT)
  • Barry Isralewitz (Wed May 08 2002 - 11:01:26 CDT)
  • Barry Isralewitz (Tue May 07 2002 - 22:15:21 CDT)
  • Storr, Mark (Tue May 07 2002 - 13:06:43 CDT)
• Animation
  • John Stone (Wed Apr 10 2002 - 09:18:24 CDT)
  • Paul Hubbard (Tue Apr 09 2002 - 15:09:40 CDT)
  • Justin Gullingsrud (Tue Apr 09 2002 - 14:36:36 CDT)
  • John Stone (Tue Apr 09 2002 - 14:24:36 CDT)
  • Paul Hubbard (Tue Apr 09 2002 - 14:12:49 CDT)
  • Simon Hogg (Wed Aug 30 2000 - 19:13:17 CDT)
  • John Stone (Wed Aug 30 2000 - 13:00:24 CDT)
  • B. Bennion (Wed Aug 30 2000 - 11:47:25 CDT)
  • John Stone (Wed Aug 30 2000 - 11:06:03 CDT)
  • spezia_at_caspur.it (Tue Aug 29 2000 - 09:26:07 CDT)
• animation and reps
  • Aitor Gonzalez (Mon Apr 09 2001 - 08:17:52 CDT)
  • Justin Gullingsrud (Wed Apr 04 2001 - 14:15:19 CDT)
  • John Stone (Sat Mar 31 2001 - 11:02:23 CST)
  • B. Bennion (Sat Mar 31 2001 - 01:40:43 CST)
• animation from files with different numbers of atoms
  • Justin Gullingsrud (Sat Jun 22 2002 - 17:07:56 CDT)
  • Jennifer Young (Sat Jun 22 2002 - 16:21:01 CDT)
• animation of an atom diffusion inside a bulk crystal
  • Axel Kohlmeyer (Fri Feb 01 2008 - 05:01:33 CST)
  • massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
• animation question
  • #WONG CHEE HOW# (Fri Mar 28 2003 - 00:10:24 CST)
  • John Stone (Thu Mar 27 2003 - 22:51:57 CST)
  • Randall Hall (Thu Mar 27 2003 - 12:37:35 CST)
• animation with PDBs
  • John Stone (Thu Nov 07 2002 - 10:33:26 CST)
  • Ross J. Toedte (Thu Nov 07 2002 - 10:10:09 CST)
• animation with variable number/names of atoms
  • Axel Kohlmeyer (Tue May 04 2010 - 07:40:37 CDT)
  • Maxim Paliy. (Mon May 03 2010 - 19:05:44 CDT)
  • Axel Kohlmeyer (Mon May 03 2010 - 16:47:05 CDT)
  • John Stone (Mon May 03 2010 - 14:46:34 CDT)
  • Maxim Paliy. (Mon May 03 2010 - 09:10:58 CDT)
• Animations using VMD:
  • Vikas Varshney (Tue Aug 06 2013 - 06:41:35 CDT)
  • Axel Kohlmeyer (Tue Aug 06 2013 - 06:02:42 CDT)
  • Sumit Kumar (Mon Aug 05 2013 - 19:00:03 CDT)
• animations with molecular surfaces
  • John Stone (Mon Jun 24 2002 - 14:17:12 CDT)
  • Will Sheffler (Sat Jun 22 2002 - 02:32:12 CDT)
• ANN: BioCoRE now includes remote job submission
  • biocore_at_ks.uiuc.edu (Fri Mar 30 2001 - 13:26:32 CST)
• Announce VMD 1.9 released
  • John Stone (Mon Mar 14 2011 - 16:49:37 CDT)
• Announce: CPMD VMD visualization tutorial
  • Axel Kohlmeyer (Thu Dec 18 2003 - 13:25:56 CST)
• Announce: JMV version 0.7 is available!
  • John Stone (Fri Nov 02 2001 - 15:30:28 CST)
  • John Stone (Tue Oct 30 2001 - 16:15:33 CST)
• Announce: MDTools update
  • John Stone (Thu Nov 30 2000 - 14:51:44 CST)
• Announce: New VMD Images and Movies tutorial posted online...
  • John Stone (Wed Jan 31 2007 - 00:23:46 CST)
• Announce: new vmdmovie script available...
  • John Stone (Mon Apr 08 2002 - 22:23:01 CDT)
• Announce: Struc. Bio. Software DB updates
  • John Stone (Thu Dec 06 2001 - 11:21:57 CST)
• Announce: Structural Biology Software Database
  • John Stone (Thu Jan 04 2001 - 14:04:34 CST)
• Announce: Updated VMD 1.8 plugins available
  • John Stone (Fri Feb 14 2003 - 16:47:39 CST)
• Announce: VMD 1.4 beta 1
  • John Stone (Mon Oct 04 1999 - 17:07:49 CDT)
• Announce: VMD 1.4 beta 2
  • John Stone (Tue Nov 09 1999 - 15:19:35 CST)
• Announce: VMD 1.4 beta 3
  • John Stone (Thu Nov 18 1999 - 16:08:16 CST)
• Announce: VMD 1.4 beta 4
  • John Stone (Wed Dec 22 1999 - 16:40:53 CST)
• Announce: VMD 1.6 Released
  • John Stone (Fri Dec 22 2000 - 17:17:04 CST)
• Announce: VMD 1.6.1 Released!
  • John Stone (Tue Apr 24 2001 - 10:03:39 CDT)
• Announce: VMD 1.6.1a2 is available
  • John Stone (Mon Mar 05 2001 - 15:17:19 CST)
• Announce: VMD 1.6.1a3 is available
  • John Stone (Mon Mar 12 2001 - 17:46:34 CST)
• Announce: VMD 1.6a1 is available
  • Kim Branson (Sun Aug 27 2000 - 23:13:24 CDT)
  • John Stone (Thu Aug 24 2000 - 18:43:53 CDT)
• Announce: VMD 1.6a2 is available
  • John Stone (Thu Sep 14 2000 - 02:38:08 CDT)
• Announce: VMD 1.6a3 is available
  • John Stone (Fri Oct 06 2000 - 14:37:27 CDT)
• Announce: VMD 1.6a4 is available
  • John Stone (Tue Nov 21 2000 - 00:19:42 CST)
• Announce: VMD 1.7 Released!!
  • John Stone (Thu Aug 02 2001 - 14:26:09 CDT)
• Announce: VMD 1.7.1 released!
  • John Stone (Sun Dec 23 2001 - 22:53:26 CST)
• Announce: VMD 1.7.1b1 test version is available...
  • John Stone (Sat Dec 22 2001 - 21:56:00 CST)
  • John Stone (Wed Dec 05 2001 - 21:14:37 CST)
• Announce: VMD 1.7.2 (Windows-only GUI update) is available
  • John Stone (Wed Feb 06 2002 - 19:07:55 CST)
• Announce: VMD 1.7b1 is available!
  • John Stone (Tue Jul 10 2001 - 18:15:45 CDT)
• Announce: VMD 1.7b2 is available!
  • John Stone (Wed Jul 25 2001 - 10:12:11 CDT)
• Announce: VMD 1.8 is available!
  • John Stone (Mon Dec 09 2002 - 15:22:28 CST)
• Announce: VMD 1.8.1 released!!
  • John Stone (Sun Jun 15 2003 - 23:37:12 CDT)
  • MengJuei Hsieh (Sun Jun 15 2003 - 22:47:23 CDT)
  • John Stone (Sun Jun 15 2003 - 15:38:19 CDT)
• Announce: VMD 1.8.2 released!!
  • John Stone (Fri Dec 05 2003 - 14:53:13 CST)
• Announce: VMD 1.8.3 released!!
  • John Stone (Wed Feb 16 2005 - 00:09:04 CST)
• Announce: VMD 1.8.4 Released!!
  • John Stone (Mon Apr 17 2006 - 11:37:34 CDT)
• Announce: VMD 1.8.5 Released!
  • John Stone (Fri Aug 25 2006 - 23:51:22 CDT)
• Announce: VMD 1.8.6 Released!
  • John Stone (Sun Apr 08 2007 - 00:51:52 CDT)
• Announce: VMD 1.8.7 released
  • John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
• Announce: VMD 1.9.1 released
  • John Stone (Sat Feb 04 2012 - 14:25:58 CST)
• Announce: VMD at Super Computing 99
  • Kirby Vandivort (Thu Nov 11 1999 - 16:32:51 CST)
• Announce: VMD Users Image Gallery
  • John Stone (Thu Feb 22 2001 - 13:43:31 CST)
• Announce: ZoomSeq -- sequence browser for VMD
  • Barry Isralewitz (Thu Dec 28 2000 - 14:54:20 CST)
• Announcement about Faraday Discussion on Molecular Simulation and Visualization - call for abstracts deadline 22 July 2013
  • Marc Baaden (Tue Jul 02 2013 - 15:00:02 CDT)
• ANNOUNCEMENT: BioCoRe
  • Robert Brunner (Fri Mar 03 2000 - 10:22:28 CST)
• Announcement: call for abstracts (**extended deadline**): SC15 workshop "Producing High-Performance and Sustainable Software for Molecular Simulation"
  • Arno Proeme (Mon Oct 05 2015 - 19:33:18 CDT)
• Announcement: Hands-On Workshop On Computational Biophysics
  • Danielle Chandler (Wed Jan 07 2015 - 12:30:34 CST)
  • Danielle Chandler (Wed Dec 17 2014 - 10:24:49 CST)
  • Danielle Chandler (Tue Oct 07 2014 - 11:30:00 CDT)
  • Danielle Chandler (Wed Aug 27 2014 - 13:04:56 CDT)
  • Danielle Chandler (Tue Aug 12 2014 - 09:30:56 CDT)
• Announcement: QM/MM Workshop
  • Axel Kohlmeyer (Thu Apr 19 2007 - 09:14:50 CDT)
• Announcement: User defined movie animation
  • Emmanuel, Alaina (Fri Nov 28 2014 - 10:58:51 CST)
  • Norman Geist (Fri Nov 28 2014 - 01:04:06 CST)
• Announcement: Workshop on Simulation Based Drug Discovery (San Diego, CA, Sept 21-25, 2015)
  • Lela Vukovic (Fri Jun 12 2015 - 21:06:22 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Berkeley, CA, Aug 3-7, 2015)
  • Lela Vukovic (Wed May 20 2015 - 00:06:46 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Lake Tahoe, CA, Aug 3-7, 2015)
  • Lela Vukovic (Tue Mar 24 2015 - 15:51:28 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Odense, Denmark, Oct 12-16, 2015)
  • Lela Vukovic (Wed May 06 2015 - 01:39:55 CDT)
• Announcement: ‘Hands On’ Workshop on Computational Biophysics (Pittsburgh, PA, June 1-5, 2015)
  • Lela Vukovic (Wed Mar 04 2015 - 13:08:28 CST)
• Announcing MDSalon!
  • Jim Phillips (Tue Nov 21 2000 - 15:15:21 CST)
• annoying bug in 1.9.2
  • Axel Kohlmeyer (Mon Jun 15 2015 - 08:07:38 CDT)
  • Maxim Paliy (Mon Jun 15 2015 - 07:43:35 CDT)
• Another feature request for vmd 1.8
  • John Stone (Wed Oct 30 2002 - 10:41:11 CST)
  • David Chalmers (Mon Oct 28 2002 - 20:02:15 CST)
• another tachyon problem
  • John Stone (Wed Jan 23 2013 - 12:10:08 CST)
  • John Stone (Wed Jan 23 2013 - 11:40:49 CST)
  • Albert (Wed Jan 23 2013 - 11:41:52 CST)
  • Albert (Wed Jan 23 2013 - 11:15:04 CST)
• Another thought related to drawing dipole moment vectors
  • Bogdan Costescu (Sun May 27 2012 - 07:10:12 CDT)
  • Axel Kohlmeyer (Sat May 26 2012 - 16:22:55 CDT)
  • Andrew DeYoung (Sat May 26 2012 - 16:14:52 CDT)
  • Wang Yi (Sat May 26 2012 - 14:27:25 CDT)
  • Andrew DeYoung (Sat May 26 2012 - 12:27:53 CDT)
• another trivial question regarding the key setting.
  • Justin Gullingsrud (Mon Mar 25 2002 - 10:26:37 CST)
  • John Stone (Mon Mar 25 2002 - 09:07:14 CST)
  • Margaret Cheung (Mon Mar 25 2002 - 06:28:09 CST)
• antechamber for Windows
  • John Stone (Fri May 27 2011 - 15:16:20 CDT)
  • Keith Battle (Fri May 20 2011 - 12:48:21 CDT)
• antialiasing
  • Axel Kohlmeyer (Wed Sep 13 2006 - 14:10:30 CDT)
  • John Stone (Wed Sep 13 2006 - 14:07:44 CDT)
  • Wen Li (Wed Sep 13 2006 - 14:00:02 CDT)
  • Axel Kohlmeyer (Wed Sep 13 2006 - 13:56:38 CDT)
  • Wen Li (Wed Sep 13 2006 - 13:36:53 CDT)
• Antialiasing ?
  • Stéphane Teletchéa (Thu Oct 24 2002 - 02:16:35 CDT)
  • John Stone (Wed Oct 23 2002 - 10:07:15 CDT)
  • Marc Baaden (Wed Oct 23 2002 - 08:45:22 CDT)
• antialiasing problem
  • Eamon Caddigan (Thu Nov 20 2003 - 15:15:00 CST)
  • ailong (Thu Nov 20 2003 - 12:54:22 CST)
• Antw: Stereo Mode User Defined
  • Christian Wohlschlager (Wed Nov 05 2014 - 02:08:34 CST)
• any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0
  • John Stone (Wed Feb 11 2004 - 20:02:26 CST)
  • John Stone (Wed Feb 11 2004 - 18:33:51 CST)
  • Dallas Warren (Wed Feb 11 2004 - 17:14:28 CST)
  • chris.harwell_at_pharma.novartis.com (Wed Feb 11 2004 - 16:16:46 CST)
• Any interest in VMD supporting mirror reflections w/ ray tracing?
  • John Stone (Fri Nov 28 2014 - 17:30:44 CST)
  • Maxim Belkin (Thu Nov 27 2014 - 21:27:45 CST)
  • John Stone (Wed Nov 26 2014 - 13:49:51 CST)
• Any Mac (Intel) users still running 10.4.x???
  • John Stone (Mon Apr 06 2009 - 11:34:31 CDT)
  • John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
• Any methods for real stereo viewing with Mac and OsX
  • Peter Engelhardt (Sat Nov 06 2004 - 16:51:32 CST)
  • John Stone (Sat Nov 06 2004 - 12:41:30 CST)
  • Peter Engelhardt (Sat Nov 06 2004 - 13:19:33 CST)
• Any TCL script to identify specific MD water molecules with their respective IDs, forming hbond with certain residues in every frame
  • Alvea Tasneem (Wed Feb 02 2022 - 11:48:23 CST)
• Any tutorial/manual for Dowser for membrane protein modeling
  • JC Gumbart (Wed Aug 19 2020 - 10:04:21 CDT)
  • Giacomo Fiorin (Wed Aug 19 2020 - 07:32:14 CDT)
  • JC Gumbart (Wed Aug 19 2020 - 06:37:40 CDT)
  • Faisal, H M Nasrullah (Tue Aug 18 2020 - 12:14:05 CDT)
• Any way for comparing two structures??
  • Luis Gracia (Tue May 31 2005 - 14:07:45 CDT)
  • Blake Charlebois (Tue May 31 2005 - 10:50:32 CDT)
  • Dmitry Osolodkin (Tue May 31 2005 - 09:11:07 CDT)
  • Dmitry Osolodkin (Tue May 31 2005 - 08:58:29 CDT)
• Any way to output contact map data
  • Luis Gracia (Wed Mar 21 2007 - 11:12:32 CDT)
  • Guo Zhi (Wed Mar 21 2007 - 03:32:37 CDT)
  • John Stone (Wed Mar 21 2007 - 01:42:15 CDT)
  • Guo Zhi (Tue Mar 20 2007 - 09:18:03 CDT)
• any way to rotate and translate with mouse without changing modes?
  • John Stone (Mon Jun 30 2014 - 22:31:31 CDT)
  • John Stone (Wed Jun 25 2014 - 11:33:15 CDT)
  • Carlos Simmerling (Wed Jun 25 2014 - 11:42:32 CDT)
  • Josh Vermaas (Wed Jun 25 2014 - 10:49:48 CDT)
  • Carlos Simmerling (Wed Jun 25 2014 - 09:30:48 CDT)
  • Ajasja LjubetiÄ� (Tue Jun 24 2014 - 15:37:39 CDT)
  • Carlos Simmerling (Tue Jun 24 2014 - 13:17:52 CDT)
• anybody interested in running VMD in parallel (without recompiling)?
  • Axel Kohlmeyer (Wed May 30 2012 - 19:40:45 CDT)
• Anyone Completed ffTK Calc Bonded Tab using ORCA gbw instead of Gaussian chk?
  • Joel Subach (Thu Feb 22 2024 - 03:08:29 CST)
  • Joel Subach (Tue Feb 20 2024 - 05:43:11 CST)
  • Joel Subach (Tue Feb 20 2024 - 02:01:03 CST)
  • PaweÅ‚ KÄ™dzierski (Tue Feb 20 2024 - 01:32:05 CST)
  • Joel Subach (Mon Feb 19 2024 - 14:08:30 CST)
• Anyone have catdcd-4.0 for BlueGene?
  • Axel Kohlmeyer (Mon Jan 08 2007 - 16:36:38 CST)
  • John Stone (Mon Jan 08 2007 - 15:41:10 CST)
  • Joshua D. Moore (Mon Jan 08 2007 - 15:34:09 CST)
• Anyone have cyclic structures I can use for testing?
  • John Stone (Tue Feb 20 2007 - 01:28:29 CST)
• Anyone using ATI X1600?
  • Christoph Weber (Mon Jul 17 2006 - 16:18:00 CDT)
  • John Stone (Mon Jul 17 2006 - 11:17:25 CDT)
  • Christoph Weber (Fri Jul 14 2006 - 18:35:35 CDT)
  • John Stone (Thu Jul 13 2006 - 10:42:38 CDT)
  • Yu Zhou (Thu Jul 13 2006 - 07:39:59 CDT)
• APBS automation with VMD
  • John Stone (Thu Sep 20 2012 - 15:57:24 CDT)
  • Martin, Erik W (Fri Sep 07 2012 - 09:41:54 CDT)
• APBS data visualization
  • Vlad Cojocaru (Tue Jan 25 2005 - 13:08:23 CST)
• APBS dx colors depend on order of molec files loaded???
  • John Stone (Thu Oct 18 2007 - 15:08:21 CDT)
  • Chari, Ravi (Thu Oct 18 2007 - 14:52:48 CDT)
• apbs electrostatics
  • John Stone (Wed Sep 17 2008 - 21:42:28 CDT)
  • James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
• APBS electrostatics: Output file missing or unreadable.
  • Ahmet yýldýrým (Wed Nov 06 2013 - 05:57:40 CST)
• APBS error
  • Vlad Cojocaru (Thu Feb 17 2005 - 08:24:07 CST)
  • Armen Nalian (Wed Feb 16 2005 - 18:58:54 CST)
• APBS error : Cannot read output file
  • Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
  • John Stone (Tue Jun 02 2009 - 09:55:51 CDT)
• APBS for small molecules
  • jcorradi_at_criba.edu.ar (Tue May 15 2012 - 13:31:15 CDT)
  • George Tzotzos (Tue May 15 2012 - 11:01:03 CDT)
  • Axel Kohlmeyer (Tue May 15 2012 - 09:22:02 CDT)
  • jcorradi_at_criba.edu.ar (Tue May 15 2012 - 08:28:28 CDT)
  • Axel Kohlmeyer (Tue May 15 2012 - 00:41:56 CDT)
  • jcorradi_at_criba.edu.ar (Sun May 13 2012 - 22:00:08 CDT)
• APBS installation problem
  • Axel Kohlmeyer (Wed Jun 22 2011 - 13:17:30 CDT)
  • Sangita Kachhap (Wed Jun 22 2011 - 12:44:34 CDT)
  • Sangita Kachhap (Wed Jun 22 2011 - 11:23:19 CDT)
• APBS location in vmdrc ?
  • Sabine Reisser (Mon Sep 24 2012 - 09:14:11 CDT)
  • John Stone (Thu Sep 20 2012 - 14:35:24 CDT)
  • Sabine Reisser (Mon Sep 17 2012 - 10:51:52 CDT)
• APBS Output file missing or unreadable
  • Ahmet yýldýrým (Fri Nov 08 2013 - 14:31:42 CST)
  • John Stone (Fri Nov 08 2013 - 14:47:25 CST)
  • Gmail2 (Thu Nov 07 2013 - 21:31:32 CST)
  • Ahmet yýldýrým (Thu Nov 07 2013 - 07:33:26 CST)
  • Ahmet yýldýrým (Thu Nov 07 2013 - 03:11:40 CST)
  • John Stone (Wed Nov 06 2013 - 10:31:14 CST)
  • Ahmet yýldýrým (Wed Nov 06 2013 - 07:05:09 CST)
• APBS plugin
  • Sladjana Maric (Thu Jun 03 2010 - 11:50:33 CDT)
  • John Stone (Thu Jun 03 2010 - 11:37:06 CDT)
  • Sladjana Maric (Thu May 27 2010 - 18:16:15 CDT)
  • Nathan C. Rockwell (Thu Dec 08 2005 - 15:17:48 CST)
  • John Stone (Thu Dec 08 2005 - 11:16:19 CST)
  • Anthony Cruz (Thu Dec 08 2005 - 14:07:37 CST)
  • John Stone (Thu Dec 08 2005 - 10:14:01 CST)
  • Mamoru Yamanishi (Wed Dec 07 2005 - 21:48:56 CST)
  • John Stone (Wed Dec 07 2005 - 17:08:21 CST)
  • Mamoru Yamanishi (Wed Dec 07 2005 - 14:18:48 CST)
  • Anthony Cruz (Wed Dec 07 2005 - 14:06:06 CST)
  • John Stone (Tue Jan 25 2005 - 11:22:53 CST)
  • Vlad Cojocaru (Tue Jan 25 2005 - 09:36:11 CST)
• APBS plugin - lib error
  • John Stone (Thu May 22 2014 - 19:24:31 CDT)
  • Fateme Sadat Emami (Tue May 06 2014 - 20:59:58 CDT)
• APBS Plugin for VMD
  • Eamon Caddigan (Mon Feb 23 2004 - 14:14:33 CST)
• APBS plugin requires molecule renaming after drag and drop loading of .pqr file
  • John Stone (Fri Jul 27 2012 - 11:34:13 CDT)
  • Christopher Neale (Thu Jul 26 2012 - 21:03:35 CDT)
• APBS plugin, created file pot-PE0.dx
  • John Stone (Fri May 27 2011 - 14:43:04 CDT)
  • Ricardo Oliveira dos Santos Soares (Tue May 24 2011 - 13:39:56 CDT)
  • John Stone (Mon May 23 2011 - 15:12:51 CDT)
  • Ricardo Oliveira dos Santos Soares (Mon May 23 2011 - 14:55:00 CDT)
• APBS tutorial link broken
  • Irene Newhouse (Thu Jan 14 2010 - 17:01:14 CST)
  • John Stone (Thu Jan 14 2010 - 17:11:56 CST)
• apbs with vmd, no output
  • John Stone (Thu Jun 02 2011 - 09:44:03 CDT)
  • John Stone (Tue May 10 2011 - 15:09:39 CDT)
  • Asmaa Elsheshiny (Tue May 10 2011 - 12:14:08 CDT)
• APBS: ELEC values
  • John Stone (Thu Aug 28 2014 - 16:42:54 CDT)
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 16:35:56 CDT)
• APBS: uncharged molecule
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 16:13:29 CDT)
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 15:32:57 CDT)
  • John Stone (Thu Aug 28 2014 - 15:40:44 CDT)
  • John Stone (Thu Aug 28 2014 - 15:31:34 CDT)
  • Jean-Patrick Francoia (Thu Aug 28 2014 - 15:00:58 CDT)
• apocynin/1k4u
  • Ajasja LjubetiÄ� (Tue Dec 07 2010 - 10:31:25 CST)
  • John Stone (Tue Dec 07 2010 - 09:23:57 CST)
  • vani panguluri (Mon Dec 06 2010 - 13:50:06 CST)
• Apologies
  • Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
  • Adrain Koh (Wed Nov 10 2004 - 04:12:55 CST)
• Apologizes for "How to select some sugar atoms"
  • Jean Richelle (Fri Apr 21 2006 - 00:23:40 CDT)
• APPCRASH when loading a big trajectory file (.dcd) into VMD
  • James Kress (Tue Sep 01 2015 - 21:35:54 CDT)
  • Axel Kohlmeyer (Tue Sep 01 2015 - 20:18:06 CDT)
  • Ern Seang Ong (Tue Sep 01 2015 - 17:49:45 CDT)
• append glow lights to a VMD/Tachyon scene
  • Axel Kohlmeyer (Fri Feb 17 2012 - 08:11:53 CST)
  • Filip Persson (Fri Feb 17 2012 - 03:11:53 CST)
• append pdb
  • Axel Kohlmeyer (Sun May 16 2010 - 11:00:52 CDT)
  • politr_at_huji.ac.il (Sun May 16 2010 - 09:48:19 CDT)
• Appending to DCD file with "animate write"
  • Chang, Christopher (Wed Nov 16 2005 - 17:05:41 CST)
  • John Stone (Wed Nov 16 2005 - 15:01:02 CST)
  • Chang, Christopher (Wed Nov 16 2005 - 13:42:36 CST)
  • Chang, Christopher (Wed Nov 16 2005 - 13:11:30 CST)
• Apple hardware configuration
  • John Stone (Thu Mar 03 2005 - 15:46:17 CST)
  • John Stone (Mon Feb 28 2005 - 10:48:25 CST)
  • fabrizio cleri (Sat Feb 26 2005 - 02:32:42 CST)
  • fabrizio cleri (Fri Feb 25 2005 - 05:29:24 CST)
• Apple VMD not showing gro file properly
  • John Stone (Fri Feb 13 2004 - 10:52:02 CST)
  • Justin Gullingsrud (Fri Feb 13 2004 - 09:50:21 CST)
  • Jim Nettles (Thu Feb 12 2004 - 23:25:20 CST)
  • John Stone (Thu Feb 12 2004 - 17:22:02 CST)
  • John Stone (Tue Feb 10 2004 - 09:56:58 CST)
  • barrett (Tue Feb 10 2004 - 07:56:50 CST)
• Application Error message during dihedral optimization using FFTK
  • Him Bandhu Upadhyay (Fri Oct 19 2012 - 08:48:47 CDT)
  • Mayne, Christopher G (Fri Oct 19 2012 - 07:34:49 CDT)
  • Him Bandhu Upadhyay (Thu Oct 18 2012 - 21:53:45 CDT)
• Application Error while use of Auto PSF Builder
  • Axel Kohlmeyer (Sun Feb 20 2011 - 09:42:19 CST)
  • Sebastian Wilhelm (Sun Feb 20 2011 - 07:54:35 CST)
• Apply for ACS Comp travel awards for Spring 2017 meeting in San Francisco
  • John Stone (Wed Sep 28 2016 - 11:16:51 CDT)
• applying 6dof input forces
  • wmsmith (Mon Jul 11 2005 - 12:03:52 CDT)
  • wmsmith (Tue Jul 05 2005 - 17:10:09 CDT)
  • Charles Moad (Tue Jul 05 2005 - 16:13:02 CDT)
• Applying forces in VMD
  • John Stone (Thu Oct 16 2014 - 15:36:15 CDT)
  • George Patargias (Thu Oct 16 2014 - 04:06:22 CDT)
• applying forces on a protein in VMD
  • John Stone (Wed Dec 05 2007 - 00:58:14 CST)
  • Peter Schellenberg (Tue Dec 04 2007 - 02:05:58 CST)
• April promo on w4tches
  • Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
• aquire coordinates from the points of the solvent representation
  • John Stone (Sat Nov 21 2009 - 01:01:15 CST)
  • Axel Kohlmeyer (Fri Nov 20 2009 - 13:23:11 CST)
  • Nuno Sousa Cerqueira (Thu Nov 19 2009 - 13:53:40 CST)
• Arbitrary values of isosurface
  • John Stone (Thu Oct 22 2009 - 17:10:14 CDT)
  • Axel Kohlmeyer (Mon Oct 19 2009 - 08:58:17 CDT)
  • aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
• Archived Spam in the VMD-L Mailing List
  • John Stone (Tue Aug 14 2007 - 10:13:27 CDT)
  • Audrey Salazar (Tue Aug 14 2007 - 10:00:30 CDT)
  • John Stone (Tue Aug 14 2007 - 10:07:37 CDT)
• area of protein cross sections
  • dimka (Mon Aug 15 2005 - 14:29:38 CDT)
• area per lipid
  • Andrés Morales (Thu Oct 20 2011 - 01:12:14 CDT)
  • snoze pa (Thu Feb 24 2011 - 12:35:30 CST)
  • Saladino, Alex (Thu Aug 26 2004 - 11:00:55 CDT)
• Area per lipid for tubular micellae
  • Nuno Sousa Cerqueira (Thu Aug 01 2013 - 18:29:57 CDT)
  • Jeffrey Potoff (Thu Aug 01 2013 - 11:26:58 CDT)
  • Vita Duka (Thu Aug 01 2013 - 08:10:10 CDT)
• ARM
  • John Stone (Sat Dec 15 2018 - 14:46:08 CST)
  • Joey Gehring (Thu Dec 13 2018 - 10:29:58 CST)
• Ask the Cluster Expert
  • Nick I (Tue Oct 25 2005 - 11:45:59 CDT)
• Ask VMD scripts
  • Nuno Sousa Cerqueira (Wed May 21 2014 - 03:17:07 CDT)
  • Vy Phan (Tue May 20 2014 - 22:52:08 CDT)
• Asking VMD to show bonds between periodic images
  • reza vatan (Thu Mar 03 2016 - 00:40:07 CST)
• Aspen Center for Physics 2013 Workshop
  • MARK PLUMMER (Tue May 22 2012 - 14:58:42 CDT)
• Assertion failure OS X 10.14
  • Per Larsson (Thu Dec 13 2018 - 03:11:53 CST)
• Assign active site
  • Nada Afiva (Mon Apr 20 2020 - 17:36:38 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 17:16:33 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 16:38:05 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 08:54:41 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 07:55:37 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 08:29:54 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 07:31:45 CDT)
  • Ashar Malik (Mon Apr 20 2020 - 04:35:30 CDT)
  • Nada Afiva (Mon Apr 20 2020 - 03:16:57 CDT)
  • Ashar Malik (Sun Apr 19 2020 - 20:31:17 CDT)
  • Nada Afiva (Sun Apr 19 2020 - 18:54:38 CDT)
  • Ashar Malik (Sun Apr 19 2020 - 18:00:28 CDT)
  • Nada Afiva (Sun Apr 19 2020 - 17:50:51 CDT)
  • Ashar Malik (Sun Apr 19 2020 - 17:20:40 CDT)
  • Nada Afiva (Sun Apr 19 2020 - 16:50:17 CDT)
• assign bond color based on bond type
  • John Stone (Wed Oct 21 2015 - 14:58:10 CDT)
  • Zhang, Tao (Wed Oct 21 2015 - 14:54:11 CDT)
  • John Stone (Wed Oct 21 2015 - 14:49:36 CDT)
  • Zhang, Tao (Wed Oct 21 2015 - 10:53:26 CDT)
• Assign velocities so I can color by velocity
  • Joshua D. Moore (Mon Dec 19 2011 - 20:54:02 CST)
  • Axel Kohlmeyer (Mon Dec 19 2011 - 12:32:34 CST)
  • Axel Kohlmeyer (Mon Dec 19 2011 - 12:05:45 CST)
  • Joshua D. Moore (Mon Dec 19 2011 - 12:26:57 CST)
  • Alexander Balaeff (Mon Dec 19 2011 - 11:37:36 CST)
  • Joshua D. Moore (Mon Dec 19 2011 - 10:48:36 CST)
• Assigning Color Codes for stress/force in .xyz trajectory files
  • Peter Freddolino (Fri Feb 09 2007 - 10:48:49 CST)
  • Peter Freddolino (Fri Feb 09 2007 - 07:57:09 CST)
  • John Stone (Fri Feb 09 2007 - 02:56:59 CST)
  • Adrian Koh (Fri Feb 09 2007 - 00:08:26 CST)
• Assigning colors to atom names
  • Lutz Maibaum (Mon Apr 13 2015 - 19:09:18 CDT)
• Assigning different temperatures in the same simulaiton
  • Jhonatam Cordeiro Rodrigues (Mon Mar 31 2014 - 08:25:06 CDT)
• assigning segment id or a unique identity in lammps data file
  • SHIVAM TIWARI (Thu Jan 04 2024 - 02:26:56 CST)
  • Axel Kohlmeyer (Wed Jan 03 2024 - 12:58:48 CST)
  • SHIVAM TIWARI (Wed Jan 03 2024 - 11:27:38 CST)
• assigning variable names using a for loop
  • Olaf Lenz (Thu Mar 29 2007 - 04:38:08 CDT)
  • namd vmd (Thu Mar 29 2007 - 03:21:45 CDT)
• assigning variables for representations
  • John Stone (Thu Sep 05 2002 - 13:53:27 CDT)
  • Vlad Cojocaru (Wed Sep 04 2002 - 07:10:40 CDT)
• assignment of "measure contacts" output to tcl variables
  • Vlad Cojocaru (Tue Apr 17 2007 - 09:50:49 CDT)
  • Vlad Cojocaru (Tue Apr 17 2007 - 07:25:19 CDT)
• Associating .crd file extension with COR Plugin
  • Axel Kohlmeyer (Wed Sep 28 2011 - 08:51:38 CDT)
  • Jernej Zidar (Tue Sep 27 2011 - 22:34:53 CDT)
  • Vadim Patsalo (Tue Sep 27 2011 - 21:08:31 CDT)
• Associating .crd file extension with COR Plugin.
  • Vadim Patsalo (Tue Sep 27 2011 - 16:58:50 CDT)
• Asymmetric concentration gradient
  • Georcki Ropon (Tue Aug 24 2021 - 13:05:05 CDT)
  • Alec Zander (Tue Aug 24 2021 - 13:01:21 CDT)
  • Jason Smith (Tue Aug 24 2021 - 12:11:09 CDT)
  • Ropon-Palacios G. (Mon Aug 23 2021 - 21:08:19 CDT)
• Asymmetric water molecule
  • Jérôme Hénin (Wed Nov 03 2010 - 05:03:40 CDT)
  • Stefan Franzen (Wed Nov 03 2010 - 02:11:22 CDT)
• athlon64 version of vmd
  • John Stone (Fri Mar 05 2004 - 17:39:47 CST)
  • Brian Bennion (Fri Mar 05 2004 - 16:30:57 CST)
  • Jerry Ebalunode (Fri Mar 05 2004 - 13:08:52 CST)
• ATI 3.7.6 driver bugs (and VMD..)
  • John Stone (Wed May 05 2004 - 16:46:01 CDT)
• ATI crashes, use of setenv VMD_EXCL_GL_EXTENSIONS
  • Dr. Peter Schellenberg (Mon Jun 06 2005 - 02:28:21 CDT)
• ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520???
  • John Stone (Wed Aug 25 2004 - 09:23:09 CDT)
  • Dr. Daniel James White PhD (Wed Aug 25 2004 - 03:44:24 CDT)
• ati interlace mode
  • Osmany guirola Cruz (Sat May 20 2006 - 14:52:25 CDT)
  • John Stone (Fri May 19 2006 - 11:45:48 CDT)
  • Sabuj Pattanayek (Thu May 18 2006 - 20:54:06 CDT)
  • John Stone (Thu May 18 2006 - 18:32:03 CDT)
  • Sabuj Pattanayek (Wed May 17 2006 - 16:44:11 CDT)
  • Osmany guirola Cruz (Wed May 17 2006 - 13:45:54 CDT)
  • John Stone (Wed May 17 2006 - 13:07:24 CDT)
  • Osmany guirola Cruz (Tue May 16 2006 - 14:13:55 CDT)
  • John Stone (Tue May 16 2006 - 10:47:03 CDT)
  • Osmany guirola Cruz (Tue May 16 2006 - 07:33:00 CDT)
  • Sabuj Pattanayek (Mon May 15 2006 - 17:00:20 CDT)
  • Osmany guirola Cruz (Mon May 15 2006 - 10:03:44 CDT)
  • John Stone (Mon May 15 2006 - 12:01:50 CDT)
  • Osmany guirola Cruz (Fri May 12 2006 - 12:12:42 CDT)
• ATI radeon 8500 and Linux quad buffered stereo
  • Dr. Daniel James White PhD (Tue Sep 02 2003 - 03:09:28 CDT)
• ati radeon 9200
  • Osmany Guirola Cruz (Thu Dec 22 2005 - 14:58:33 CST)
  • John Stone (Thu Dec 22 2005 - 10:18:17 CST)
  • Osmany Guirola Cruz (Thu Dec 22 2005 - 10:00:07 CST)
• ATI radeon x300
  • John Stone (Fri Apr 01 2005 - 14:06:16 CST)
  • jerry xu (Fri Apr 01 2005 - 12:42:59 CST)
• atom coloring
  • Laurence F. Wood (Tue Mar 12 2002 - 16:39:37 CST)
  • Paul Grayson (Tue Mar 12 2002 - 14:33:29 CST)
  • Dominik Horinek (Mon Mar 11 2002 - 17:59:30 CST)
• Atom distances from trajotory
  • bo baker (Sat Feb 14 2009 - 17:16:27 CST)
  • Peter Freddolino (Sat Feb 14 2009 - 08:01:53 CST)
  • Peter Freddolino (Fri Feb 13 2009 - 09:33:01 CST)
  • bo baker (Thu Feb 12 2009 - 23:50:21 CST)
  • Peter Freddolino (Thu Feb 12 2009 - 07:40:14 CST)
  • bo baker (Thu Feb 12 2009 - 03:27:20 CST)
• atom fitting in non-PDB order
  • James Melville (Mon Feb 07 2005 - 21:27:47 CST)
• Atom ID Change
  • Axel Kohlmeyer (Mon Apr 11 2016 - 13:12:20 CDT)
  • ahmed sengab (Mon Apr 11 2016 - 12:45:41 CDT)
• Atom ID/Color change with timesteps
  • Axel Kohlmeyer (Thu May 12 2011 - 16:21:21 CDT)
  • Adkins, Laura R (Thu May 12 2011 - 16:04:26 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 13:54:23 CDT)
  • Axel Kohlmeyer (Wed May 11 2011 - 19:58:38 CDT)
  • Adkins, Laura R (Wed May 11 2011 - 19:17:05 CDT)
• atom index number
  • Axel Kohlmeyer (Thu Sep 27 2007 - 02:42:42 CDT)
  • Naser, Md Abu (Thu Sep 27 2007 - 01:28:29 CDT)
• atom index starting at 0
  • John Stone (Thu Aug 11 2005 - 16:19:57 CDT)
  • John Stone (Mon Jan 10 2005 - 18:38:51 CST)
  • Andrew Dalke (Fri Jan 07 2005 - 17:36:50 CST)
  • John Stone (Fri Jan 07 2005 - 16:10:41 CST)
  • pl (Fri Jan 07 2005 - 09:47:00 CST)
• atom indices from x y z coordinates
  • Axel Kohlmeyer (Wed Jul 03 2013 - 03:56:14 CDT)
  • Gurunath Katagi (Wed Jul 03 2013 - 03:00:15 CDT)
• Atom label offset
  • Dimitrova, Maria (Mon Dec 19 2016 - 03:12:14 CST)
• ATOM LPH
  • Aleksei (Tue Apr 14 2020 - 15:19:45 CDT)
  • Francesco Pietra (Tue Apr 14 2020 - 12:57:04 CDT)
• Atom movement within a range of Z value
  • muniyamuthu.raviprasad_at_ndsu.edu (Tue May 11 2010 - 14:47:15 CDT)
• atom name can not exceed four characters in pdb and psf?
  • Axel Kohlmeyer (Mon Jun 29 2009 - 22:32:22 CDT)
  • accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
• Atom name label
  • John Stone (Wed Mar 08 2006 - 09:42:02 CST)
  • FyD (Wed Mar 08 2006 - 04:26:17 CST)
• Atom names aliased after psfgen
  • Stefan Doerr (Thu Jul 07 2016 - 05:22:17 CDT)
  • Stefan Doerr (Thu Jul 07 2016 - 05:19:47 CDT)
  • Kevin C Chan (Thu Jul 07 2016 - 04:51:42 CDT)
• Atom names, RES-IDS...!!!
  • JC Gumbart (Mon Jun 04 2007 - 18:18:45 CDT)
  • Raul Araya (Fri Jun 01 2007 - 23:55:33 CDT)
• ATOM or HETATM record
  • Joseph E. Curtis (Fri Jan 07 2005 - 16:46:16 CST)
• Atom order in VMD
  • Maxim Belkin (Sat Mar 14 2015 - 19:21:08 CDT)
  • Arjun Sharma (Sat Mar 14 2015 - 17:50:42 CDT)
• atom position update for reference atom list
  • John Stone (Mon Jun 18 2007 - 16:43:13 CDT)
  • Philipp Schoen1 (Wed Jun 13 2007 - 08:28:30 CDT)
• Atom renumbering in DCD file
  • Chang, Christopher (Tue Aug 09 2005 - 14:15:03 CDT)
  • Justin Gullingsrud (Tue Aug 09 2005 - 13:30:08 CDT)
  • John Stone (Mon Aug 08 2005 - 19:08:03 CDT)
  • Chang, Christopher (Mon Aug 08 2005 - 18:48:33 CDT)
• atom selection
  • Axel Kohlmeyer (Mon Sep 21 2009 - 14:22:08 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 14:02:49 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 13:57:29 CDT)
  • Eric H. Lee (Sun Jun 07 2009 - 23:46:39 CDT)
  • Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
  • Joaquim Rui Rodrigues (Wed Dec 03 2008 - 11:44:55 CST)
  • Leonardo Trabuco (Wed Dec 03 2008 - 11:10:53 CST)
  • aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
• Atom Selection & List Generation
  • Josh Vermaas (Thu Jun 20 2013 - 16:13:25 CDT)
  • Alex Richards (Wed Jun 19 2013 - 16:49:40 CDT)
  • Josh Vermaas (Wed Jun 19 2013 - 15:29:41 CDT)
  • Alex Richards (Tue Jun 18 2013 - 15:31:54 CDT)
  • Josh Vermaas (Mon Jun 17 2013 - 18:37:43 CDT)
  • Alex Richards (Mon Jun 17 2013 - 16:32:12 CDT)
• Atom Selection based on angular criterion
  • Ashar Malik (Thu Sep 01 2016 - 07:02:34 CDT)
  • Sangkha Borah (Thu Sep 01 2016 - 03:10:37 CDT)
• Atom selection based on arbitrary columns in the pdb file
  • Peter Freddolino (Sat Aug 05 2006 - 15:17:21 CDT)
  • Axel Kohlmeyer (Sat Aug 05 2006 - 12:05:51 CDT)
  • Shatadal Ghosh (Sat Aug 05 2006 - 11:04:57 CDT)
• Atom selection based on center of sphere
  • Peter (Wed Mar 27 2024 - 16:14:08 CDT)
  • Joaquim Rui de Castro Rodrigues (Wed Mar 27 2024 - 06:23:54 CDT)
  • Peter (Wed Mar 27 2024 - 01:29:46 CDT)
  • Peter (Tue Mar 26 2024 - 17:04:45 CDT)
• Atom Selection for RDF
  • Axel Kohlmeyer (Sat May 22 2010 - 12:46:48 CDT)
  • Amir Hajiahmadi Farmahini (Sat May 22 2010 - 12:15:36 CDT)
  • Amir Hajiahmadi Farmahini (Sat May 22 2010 - 09:19:18 CDT)
  • Axel Kohlmeyer (Sat May 22 2010 - 10:25:06 CDT)
• atom selection from multiple molecules
  • Axel Kohlmeyer (Mon Sep 02 2013 - 11:13:31 CDT)
  • Oliver Schillinger (Mon Sep 02 2013 - 10:17:06 CDT)
• atom selection in cv module of VMD
  • Jérôme Hénin (Tue Jan 17 2017 - 07:17:02 CST)
  • Bin Sun (Sun Jan 15 2017 - 18:36:22 CST)
• atom selection in vmd
  • Alex Liu (Mon Nov 22 2010 - 16:16:45 CST)
  • Ignacio Fernández Galván (Wed Nov 17 2010 - 12:30:59 CST)
  • Ajasja LjubetiÄ� (Wed Nov 17 2010 - 10:25:55 CST)
  • Axel Kohlmeyer (Wed Nov 17 2010 - 09:56:35 CST)
  • Alex Liu (Wed Nov 17 2010 - 08:49:55 CST)
• Atom Selection Rectangle
  • Josh Vermaas (Wed Sep 24 2014 - 15:50:37 CDT)
  • Parker de Waal (Wed Sep 24 2014 - 14:45:42 CDT)
  • Parker de Waal (Wed Sep 24 2014 - 13:49:27 CDT)
  • John Stone (Wed Sep 24 2014 - 13:56:29 CDT)
  • John Stone (Tue Sep 23 2014 - 22:02:31 CDT)
  • Parker de Waal (Tue Sep 23 2014 - 21:49:32 CDT)
  • John Stone (Tue Sep 23 2014 - 21:00:29 CDT)
  • Parker de Waal (Tue Sep 23 2014 - 20:27:08 CDT)
• Atom selection to identify residues that clash
  • Jacob Durrant (Tue Feb 25 2014 - 23:49:38 CST)
  • Josh Vermaas (Tue Feb 25 2014 - 21:44:09 CST)
  • Josh Vermaas (Sat Feb 22 2014 - 17:49:43 CST)
  • Mike Makowski (Sat Feb 22 2014 - 00:05:19 CST)
  • Jacob Durrant (Fri Feb 21 2014 - 21:56:32 CST)
• Atom selection with asterisk atom name
  • Vermaas, Josh (Fri May 28 2021 - 14:03:41 CDT)
  • Nathan Kern (Fri May 28 2021 - 11:49:41 CDT)
  • Nathan Kern (Fri May 28 2021 - 11:48:44 CDT)
  • Vermaas, Josh (Fri May 28 2021 - 10:49:25 CDT)
  • Vermaas, Josh (Wed May 26 2021 - 10:57:06 CDT)
  • Saikat Pal (Wed May 26 2021 - 02:00:59 CDT)
• Atom selections for measure - index sorting
  • Axel Kohlmeyer (Thu Dec 15 2016 - 10:24:15 CST)
  • Brian Radak (Thu Dec 15 2016 - 09:33:06 CST)
  • Ajasja LjubetiÄ� (Thu Dec 15 2016 - 02:31:16 CST)
  • Brian Radak (Wed Dec 14 2016 - 15:49:03 CST)
• Atom Selections in QwikMD
  • João Ribeiro (Thu Jun 21 2018 - 10:03:44 CDT)
  • João Ribeiro (Wed Jun 20 2018 - 17:06:36 CDT)
  • SM Bargeen A Turzo (Wed Jun 20 2018 - 14:28:03 CDT)
• atom serial number
  • Peter Freddolino (Sun Jul 01 2007 - 13:40:52 CDT)
  • Francesco Pietra (Sun Jul 01 2007 - 02:33:20 CDT)
• Atom serial numbers in array format
  • Axel Kohlmeyer (Thu Feb 21 2013 - 06:38:45 CST)
  • Marzieh Alishahi (Thu Feb 21 2013 - 05:30:58 CST)
  • Axel Kohlmeyer (Thu Feb 21 2013 - 04:43:08 CST)
  • Marzieh Alishahi (Thu Feb 21 2013 - 03:26:33 CST)
• Atom sorting according to resid
  • andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
  • Axel Kohlmeyer (Wed Oct 21 2009 - 11:21:58 CDT)
• atom type
  • bo liu (Fri Oct 03 2008 - 06:51:22 CDT)
  • Rudra Banerjee (Thu Oct 02 2008 - 22:57:47 CDT)
  • Axel Kohlmeyer (Thu Oct 02 2008 - 13:16:47 CDT)
  • Rudra Banerjee (Thu Oct 02 2008 - 12:14:25 CDT)
  • Boris Steipe (Wed Oct 01 2008 - 11:37:48 CDT)
  • Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
• Atom type information is not incremented after merging two molecules.
  • Manoj Dhiman (Fri Feb 23 2018 - 09:22:18 CST)
  • Axel Kohlmeyer (Fri Feb 23 2018 - 04:02:27 CST)
  • Manoj Dhiman (Fri Feb 23 2018 - 03:34:16 CST)
• atom types depend on PSF/PDB reading order
  • Vermaas, Joshua (Thu Dec 20 2018 - 08:42:52 CST)
  • Gumbart, JC (Wed Dec 19 2018 - 18:46:23 CST)
• Atom typing
  • Justin Gullingsrud (Tue Mar 30 2004 - 14:59:54 CST)
  • Kooser, Ara S (Tue Mar 30 2004 - 12:24:30 CST)
• atom velocity arrows
  • John Stone (Wed Mar 12 2003 - 15:24:31 CST)
  • John Stone (Wed Mar 12 2003 - 13:45:21 CST)
• ATOM VELOCITY HIGH ERROR in Coarse grained Simulation
  • Rabeta Yeasmin (Fri Mar 30 2018 - 10:19:32 CDT)
  • Axel Kohlmeyer (Fri Mar 30 2018 - 09:41:50 CDT)
  • RAKESH (Fri Mar 30 2018 - 08:39:40 CDT)
• Atomic bond counting wuth VMD
  • Josh Vermaas (Fri Jun 19 2020 - 15:47:22 CDT)
  • Josh Vermaas (Fri Jun 19 2020 - 08:55:59 CDT)
  • Otakandza Glenn (Fri Jun 19 2020 - 06:11:03 CDT)
• Atomic trajectory to COM trajectory,
  • Maxim Belkin (Wed Feb 05 2014 - 14:30:37 CST)
  • Ali Alizadeh (Wed Feb 05 2014 - 14:20:17 CST)
  • Maxim Belkin (Wed Feb 05 2014 - 10:53:15 CST)
  • Ali Alizadeh (Wed Feb 05 2014 - 05:31:39 CST)
  • Maxim Belkin (Tue Feb 04 2014 - 16:00:03 CST)
  • Ali Alizadeh (Tue Feb 04 2014 - 15:21:03 CST)
  • Axel Kohlmeyer (Wed Dec 11 2013 - 23:53:59 CST)
  • Ali Alizadeh (Wed Dec 11 2013 - 17:29:26 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 13:13:49 CST)
  • Axel Kohlmeyer (Mon Dec 09 2013 - 13:09:22 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 12:43:57 CST)
  • Axel Kohlmeyer (Mon Dec 09 2013 - 10:21:08 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 10:26:49 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 09:55:58 CST)
  • Axel Kohlmeyer (Mon Dec 09 2013 - 08:32:15 CST)
  • Ali Alizadeh (Mon Dec 09 2013 - 07:09:30 CST)
• AtomLexer/lex.yy.c error
  • John Stone (Fri Sep 26 2003 - 13:59:38 CDT)
  • John Stone (Thu Sep 25 2003 - 16:35:22 CDT)
  • Jeroen Akershoek (Wed Sep 17 2003 - 01:44:46 CDT)
  • John Stone (Tue Sep 16 2003 - 12:06:33 CDT)
  • Brian Bennion (Tue Sep 16 2003 - 10:37:28 CDT)
  • Jeroen Akershoek (Tue Sep 16 2003 - 10:28:20 CDT)
  • Brian Bennion (Tue Sep 16 2003 - 10:06:33 CDT)
  • Jeroen Akershoek (Tue Sep 16 2003 - 05:38:11 CDT)
• atoms deleted in patch try to come back
  • Irene Newhouse (Sun Jul 15 2007 - 18:42:26 CDT)
  • Irene Newhouse (Sun Jul 15 2007 - 18:37:46 CDT)
  • Peter Freddolino (Sun Jul 15 2007 - 17:36:04 CDT)
  • JC Gumbart (Sun Jul 15 2007 - 02:02:18 CDT)
  • Irene Newhouse (Sun Jul 15 2007 - 01:01:48 CDT)
• Atoms dropped on running AutoPSF
  • Ashar Malik (Fri Mar 24 2023 - 19:38:09 CDT)
  • Priyanshu Gupta (Fri Mar 24 2023 - 12:52:46 CDT)
• atoms filter?
  • John Stone (Thu May 16 2002 - 10:09:07 CDT)
  • Wuwei Liang (Thu May 16 2002 - 13:03:35 CDT)
• Atoms in rings
  • John Stone (Fri Oct 27 2017 - 14:30:14 CDT)
  • John Stone (Fri Oct 27 2017 - 12:54:31 CDT)
  • Vermaas, Joshua (Fri Oct 27 2017 - 11:44:43 CDT)
  • MD Simulation (Fri Oct 27 2017 - 09:31:41 CDT)
• atoms inside a Nanotube, Deleting
  • Nima Soltani (Sun Jun 07 2020 - 22:49:58 CDT)
• Atoms moving too fast
  • João Ribeiro (Thu May 25 2017 - 08:37:59 CDT)
  • Ashar Malik (Wed May 24 2017 - 20:49:05 CDT)
  • Pratik Narain Srivastava (Wed May 24 2017 - 14:36:45 CDT)
• Atoms numbers in VMD
  • Leandro Martínez (Thu Sep 25 2008 - 14:56:01 CDT)
  • Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
• Atoms on top of each in wrapped trajectory
  • Alex Hummels (Thu Aug 15 2019 - 16:18:57 CDT)
  • Jérôme Hénin (Thu Aug 15 2019 - 16:06:53 CDT)
  • Vermaas, Joshua (Thu Aug 15 2019 - 15:56:09 CDT)
  • Alex Hummels (Thu Aug 15 2019 - 14:42:02 CDT)
• Atoms poorly guessed after applying a patch in Psfgen
  • Josh Vermaas (Fri Mar 29 2024 - 11:58:43 CDT)
  • Josh Vermaas (Fri Mar 29 2024 - 09:47:58 CDT)
  • Kyle Billings (Thu Mar 28 2024 - 15:15:23 CDT)
  • Vermaas, Josh (Wed Mar 27 2024 - 09:51:49 CDT)
  • Josh Vermaas (Mon Mar 25 2024 - 15:01:52 CDT)
  • Kyle Billings (Mon Mar 25 2024 - 12:28:59 CDT)
• atoms selection
  • Jérôme Hénin (Mon Feb 21 2011 - 08:18:04 CST)
  • Axel Kohlmeyer (Sun Feb 20 2011 - 12:18:56 CST)
  • Iman Salehinia (Sat Feb 19 2011 - 16:33:27 CST)
• atoms selection/special characters
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:06:47 CST)
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:06:18 CST)
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:03:29 CST)
  • mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:04:07 CST)
  • Fatemesadat Emami (Fri Dec 20 2013 - 20:52:32 CST)
  • Axel Kohlmeyer (Fri Nov 29 2013 - 20:43:33 CST)
  • Axel Kohlmeyer (Fri Nov 29 2013 - 19:17:08 CST)
  • Fatemesadat Emami (Fri Nov 29 2013 - 18:13:17 CST)
• atoms with changing colors
  • Simone Melchionna (Thu Mar 20 2008 - 16:50:50 CDT)
  • John Stone (Thu Mar 20 2008 - 17:03:47 CDT)
  • Axel Kohlmeyer (Thu Mar 20 2008 - 17:05:53 CDT)
• atoms within a radius cutoff and a percentage cutoff of a trajectory
  • Aravinda Munasinghe (Sun Jun 23 2019 - 11:48:15 CDT)
  • Amendra Fernando Hewa Dewage (Fri Jun 21 2019 - 15:27:01 CDT)
• atomsel : setbonds: Need one bondlist for each selected atom
  • leila karami (Wed Feb 01 2017 - 01:44:26 CST)
• AtomSel and Graphics
  • Justin Gullingsrud (Sat Feb 23 2002 - 16:53:21 CST)
  • John Stone (Fri Feb 22 2002 - 16:07:07 CST)
  • Fei Xu (Fri Feb 22 2002 - 11:26:51 CST)
• AtomSel with object index (Python scripting)
  • John Stone (Fri Feb 10 2006 - 13:26:44 CST)
  • ziemys_at_ecr6.ohio-state.edu (Fri Feb 10 2006 - 13:04:07 CST)
• atomsel: writepdb failed for vmd 1.8.6
  • John Stone (Tue Jun 19 2007 - 17:21:01 CDT)
  • Margaret S. Cheung (Tue Jun 19 2007 - 16:16:24 CDT)
• atomselect
  • Axel Kohlmeyer (Thu Apr 17 2008 - 11:07:27 CDT)
  • Jian Zou (Thu Apr 17 2008 - 09:06:48 CDT)
  • cong chen (Wed Apr 16 2008 - 19:58:18 CDT)
  • Axel Kohlmeyer (Tue Jul 10 2007 - 08:49:38 CDT)
  • Eduard Schreiner (Tue Jul 10 2007 - 09:23:23 CDT)
  • Olaf Lenz (Tue Jul 10 2007 - 06:41:49 CDT)
  • sally cii (Tue Jul 10 2007 - 06:05:51 CDT)
  • Olaf Lenz (Tue Jul 10 2007 - 05:43:26 CDT)
  • sally cii (Tue Jul 10 2007 - 05:41:42 CDT)
  • Olaf Lenz (Tue Jul 10 2007 - 03:52:46 CDT)
  • sally cii (Tue Jul 10 2007 - 03:03:23 CDT)
  • Justin Gullingsrud (Tue Mar 18 2003 - 16:52:12 CST)
  • Justin Gullingsrud (Tue Mar 18 2003 - 16:19:36 CST)
  • B. Bennion (Tue Mar 18 2003 - 16:03:05 CST)
• atomselect across two different molids
  • Ravinder Abrol (Thu Mar 27 2014 - 15:15:42 CDT)
• atomselect and macro
  • Molybdos Kirkimpolakis (Mon Oct 17 2011 - 00:11:05 CDT)
  • Axel Kohlmeyer (Sat Oct 15 2011 - 17:33:49 CDT)
  • Molybdos Kirkimpolakis (Sat Oct 15 2011 - 15:34:59 CDT)
• atomselect counting
  • Bryan Roessler (Thu Feb 02 2012 - 13:20:38 CST)
  • Peter C. Lai (Wed Jan 25 2012 - 16:51:49 CST)
  • Axel Kohlmeyer (Wed Jan 25 2012 - 14:46:05 CST)
  • jeela keel (Wed Jan 25 2012 - 13:48:18 CST)
  • jeela keel (Wed Jan 25 2012 - 08:39:47 CST)
  • Axel Kohlmeyer (Wed Jan 25 2012 - 09:12:16 CST)
• Atomselect entire water molecule using pbwithin
  • Josh Vermaas (Fri Nov 11 2022 - 16:46:51 CST)
  • Huang, Caleb (Fri Nov 11 2022 - 14:51:53 CST)
• atomselect for interacting hydroxyl groups
  • Ashar Malik (Tue Aug 16 2022 - 12:53:49 CDT)
  • Vermaas, Josh (Tue Aug 16 2022 - 12:53:40 CDT)
  • Huang, Caleb (Tue Aug 16 2022 - 11:36:40 CDT)
• Atomselect in loops
  • Lubos Vrbka (Fri Nov 24 2006 - 07:46:14 CST)
  • Alexandre A. Vakhrouchev (Fri Nov 24 2006 - 03:50:34 CST)
• Atomselect in NAMD GUI
  • Peter Freddolino (Thu Feb 12 2009 - 06:21:11 CST)
  • bo baker (Wed Feb 11 2009 - 16:01:37 CST)
  • John Stone (Mon Feb 09 2009 - 00:06:46 CST)
  • bo baker (Sun Feb 08 2009 - 16:17:15 CST)
  • bo baker (Thu Feb 05 2009 - 05:02:45 CST)
• atomselect moveby: non-numeric in vector
  • Adupa Vasista (Tue Feb 18 2020 - 11:43:16 CST)
  • Jérôme Hénin (Tue Feb 18 2020 - 11:34:37 CST)
  • Goedde, Chris (Tue Feb 18 2020 - 11:28:35 CST)
  • Adupa Vasista (Tue Feb 18 2020 - 11:29:49 CST)
  • Adupa Vasista (Tue Feb 18 2020 - 10:59:21 CST)
  • Joaquim Rui de Castro Rodrigues (Tue Feb 18 2020 - 10:46:13 CST)
  • Adupa Vasista (Tue Feb 18 2020 - 09:32:22 CST)
• Atomselect on several molecules
  • Veronika Brazdova (Mon Feb 05 2007 - 10:11:23 CST)
  • Axel Kohlmeyer (Fri Feb 02 2007 - 13:36:13 CST)
  • Veronika Brazdova (Fri Feb 02 2007 - 12:57:25 CST)
  • Axel Kohlmeyer (Fri Feb 02 2007 - 11:19:06 CST)
  • Veronika Brazdova (Fri Feb 02 2007 - 10:04:22 CST)
• atomselect one liner
  • Axel Kohlmeyer (Sat Jul 20 2019 - 03:22:13 CDT)
  • Philippe Bopp (Sat Jul 20 2019 - 02:22:12 CDT)
• atomselect protein
  • Adrian Kaats (Thu Mar 20 2008 - 16:39:54 CDT)
  • John Stone (Thu Mar 20 2008 - 16:48:27 CDT)
• atomselect within
  • Wagener, M. (Markus) (Fri Feb 27 2004 - 04:39:48 CST)
  • John Stone (Wed Feb 25 2004 - 13:28:37 CST)
  • Wagener, M. (Markus) (Wed Feb 25 2004 - 08:23:37 CST)
• atomselect within a loop
  • Josh Vermaas (Mon Mar 18 2013 - 13:29:23 CDT)
  • Yohann Morille (Mon Mar 18 2013 - 06:17:15 CDT)
• atomselect: cannot parse selection text:
  • Viviane Corrêa (Fri Feb 07 2020 - 07:31:56 CST)
  • Giacomo Fiorin (Fri Feb 07 2020 - 06:17:21 CST)
  • Gianfranco Abrusci (Fri Feb 07 2020 - 05:40:54 CST)
  • Viviane Corrêa (Fri Feb 07 2020 - 03:37:47 CST)
  • John Stone (Thu Feb 06 2020 - 11:40:21 CST)
  • Viviane Corrêa (Thu Feb 06 2020 - 11:31:06 CST)
  • John Stone (Thu Feb 06 2020 - 11:21:21 CST)
  • Viviane Corrêa (Thu Feb 06 2020 - 11:13:25 CST)
• atomselect: cannot parse selection text: index
  • Monika Madhavi (Thu Jan 28 2016 - 23:11:57 CST)
• atomselection
  • Luis Rosales (Wed Jun 20 2007 - 10:14:56 CDT)
  • Kevser Göçmen Topal (Wed Jun 20 2007 - 02:27:50 CDT)
• atomselection by wildcard and distance exclusion
  • Bennion, Brian (Tue Jan 13 2015 - 12:23:11 CST)
  • Richard Wood (Tue Jan 13 2015 - 11:05:22 CST)
  • Axel Kohlmeyer (Tue Jan 13 2015 - 10:54:08 CST)
  • Bennion, Brian (Tue Jan 13 2015 - 10:04:52 CST)
  • John Stone (Tue Jan 13 2015 - 10:18:15 CST)
  • Norman Geist (Tue Jan 13 2015 - 01:27:02 CST)
  • John Stone (Mon Jan 12 2015 - 23:42:15 CST)
  • Bennion, Brian (Mon Jan 12 2015 - 23:12:58 CST)
  • John Stone (Mon Jan 12 2015 - 23:25:20 CST)
  • Bennion, Brian (Mon Jan 12 2015 - 18:57:52 CST)
• Atomselection for negative values
  • Chang, Christopher (Wed Jul 19 2006 - 17:46:15 CDT)
  • John Stone (Wed Jul 19 2006 - 17:03:14 CDT)
  • Chang, Christopher (Wed Jul 19 2006 - 16:18:39 CDT)
• Atomselection in NAMDENERGY
  • Axel Kohlmeyer (Fri Mar 02 2007 - 08:31:54 CST)
  • Jawahar Neelankatan (Fri Mar 02 2007 - 08:09:27 CST)
• atomselection in order
  • Myunggi Yi (Thu Aug 30 2007 - 08:49:25 CDT)
  • John Stone (Wed Aug 29 2007 - 00:11:02 CDT)
  • Myunggi Yi (Tue Aug 28 2007 - 16:35:49 CDT)
  • Leonardo Trabuco (Tue Aug 28 2007 - 10:12:10 CDT)
  • Myunggi Yi (Tue Aug 28 2007 - 09:22:35 CDT)
  • Myunggi Yi (Tue Aug 28 2007 - 08:29:03 CDT)
  • John Stone (Mon Aug 27 2007 - 14:57:12 CDT)
  • Thomas C. Bishop (Mon Aug 27 2007 - 09:34:15 CDT)
  • Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
  • Myunggi Yi (Thu Aug 23 2007 - 22:19:35 CDT)
• atomselection near periodic boundaries
  • Amir (Mon Feb 19 2024 - 12:49:35 CST)
  • Axel Kohlmeyer (Mon Feb 19 2024 - 06:55:01 CST)
  • SHIVAM TIWARI (Mon Feb 19 2024 - 00:41:43 CST)
  • Amir (Sun Feb 18 2024 - 14:54:49 CST)
• Atomselection problem
  • John Stone (Fri Feb 24 2006 - 17:07:48 CST)
  • Manali Joshi (Fri Feb 24 2006 - 16:54:12 CST)
• atomselection question
  • Peter Freddolino (Tue May 22 2007 - 19:29:53 CDT)
  • Brian Kidd (Tue May 22 2007 - 18:55:55 CDT)
• Atomselection with the position selected conditions inside the loop is not working properly
  • fan li (Thu Aug 16 2018 - 12:18:18 CDT)
  • Ashar Malik (Thu Aug 16 2018 - 11:22:21 CDT)
  • fan li (Thu Aug 16 2018 - 10:24:54 CDT)
  • Giacomo Fiorin (Thu Aug 16 2018 - 09:09:27 CDT)
  • Ashar Malik (Thu Aug 16 2018 - 08:43:50 CDT)
  • João Ribeiro (Thu Aug 16 2018 - 08:23:51 CDT)
  • Axel Kohlmeyer (Thu Aug 16 2018 - 08:14:03 CDT)
  • fan li (Thu Aug 16 2018 - 08:05:38 CDT)
  • Ashar Malik (Thu Aug 16 2018 - 06:50:38 CDT)
  • fan li (Thu Aug 16 2018 - 05:47:22 CDT)
• atomselection: number of residues
  • Axel Kohlmeyer (Sun Feb 11 2007 - 13:41:08 CST)
  • JC Gumbart (Sun Feb 11 2007 - 12:16:11 CST)
  • Peter Freddolino (Sun Feb 11 2007 - 12:11:09 CST)
  • Leonardo Trabuco (Sun Feb 11 2007 - 11:59:23 CST)
  • namd vmd (Sun Feb 11 2007 - 06:35:17 CST)
• attaching an arbitrary surface molecule to a nanopore
  • Sean T Kigerl (Tue Jul 24 2012 - 14:25:06 CDT)
• Attaching NBD label to residues mutated to cysteine in VMD
  • Satyaki Chatterjee (Sat Jul 08 2017 - 11:41:45 CDT)
• attachment file size limit for the mailing list
  • John Stone (Fri Mar 26 2021 - 00:12:37 CDT)
  • SHIVAM TIWARI (Thu Mar 25 2021 - 00:19:00 CDT)
• attempting to source a script
  • Tim Isgro (Thu Feb 12 2004 - 13:58:28 CST)
  • Andrew Dalke (Thu Feb 12 2004 - 08:41:46 CST)
  • John Stone (Wed Feb 11 2004 - 18:39:41 CST)
  • Oliver Beckstein (Wed Feb 11 2004 - 18:05:24 CST)
  • Tim Isgro (Wed Feb 11 2004 - 18:50:04 CST)
  • Brian Bennion (Wed Feb 11 2004 - 16:49:41 CST)
  • Kristy L. Mardis (Wed Feb 11 2004 - 15:51:17 CST)
• Attractive or repulsive with Namd Energy?
  • Maxim Belkin (Mon Nov 30 2015 - 10:49:43 CST)
  • Axel Kohlmeyer (Wed Nov 25 2015 - 11:35:39 CST)
  • sunyeping (Tue Nov 24 2015 - 22:55:06 CST)
  • Maxim Belkin (Tue Nov 24 2015 - 09:48:38 CST)
  • Maxim Belkin (Mon Nov 23 2015 - 13:11:33 CST)
  • Jérôme Hénin (Mon Nov 23 2015 - 03:33:30 CST)
  • sunyeping (Sun Nov 22 2015 - 20:15:06 CST)
• Authentication error VMD-xplor
  • Robert Dagil (Fri Mar 18 2011 - 07:46:07 CDT)
• Auto Bead Display Size using topotools
  • Axel Kohlmeyer (Mon Apr 02 2012 - 15:59:06 CDT)
  • Phelan Jr, Frederick R. Dr. (Mon Apr 02 2012 - 14:50:47 CDT)
• Auto IMD
  • Jordi Cohen (Mon Jan 24 2005 - 14:27:49 CST)
  • Luis Rosales (Mon Jan 24 2005 - 14:12:45 CST)
• auto ionise error
  • Ajasja LjubetiÄ� (Tue Jul 09 2013 - 14:25:25 CDT)
  • John Stone (Tue Jul 09 2013 - 13:40:47 CDT)
  • Revthi Sanker (Sat Jun 29 2013 - 07:53:03 CDT)
• auto none /psfgen
  • Jim Phillips (Thu Jun 30 2005 - 10:40:34 CDT)
  • vivek sharma (Wed Jun 29 2005 - 07:31:23 CDT)
• Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7
  • Peter Freddolino (Mon May 10 2021 - 11:03:17 CDT)
  • John Stone (Mon May 10 2021 - 10:49:16 CDT)
  • Peter Freddolino (Mon May 10 2021 - 08:14:12 CDT)
  • John Stone (Mon May 10 2021 - 01:01:05 CDT)
  • Peter Freddolino (Sun May 09 2021 - 19:17:26 CDT)
  • Patrick Osmer (Sun May 09 2021 - 14:29:00 CDT)
• Autobond Criterion
  • Axel Kohlmeyer (Fri Sep 06 2013 - 05:09:23 CDT)
  • Oliver Stenning (Fri Sep 06 2013 - 03:52:40 CDT)
• AutoHotkey script for managing VMD windows
  • Ajasja LjubetiÄ� (Fri Apr 09 2010 - 07:56:42 CDT)
• Autoi::sod2pot problem in "Modeling Nanopores for Sequencing DNA" tutorial
  • Basheer Subei (Fri Aug 15 2014 - 14:07:12 CDT)
  • Maxim Belkin (Fri Aug 15 2014 - 13:54:08 CDT)
  • Basheer Subei (Fri Aug 15 2014 - 13:45:20 CDT)
• AutoIMD
  • John Stone (Fri Oct 15 2004 - 16:36:38 CDT)
  • Luis Rosales (Wed Oct 06 2004 - 02:50:02 CDT)
• AutoIMD and fixedatoms
  • Jordi Cohen (Tue Feb 01 2005 - 12:32:38 CST)
  • Luis Rosales (Mon Jan 31 2005 - 21:47:12 CST)
• autoimd error
  • Jordi Cohen (Wed Jun 15 2005 - 13:13:25 CDT)
  • Anna Modzelewska (Wed Jun 15 2005 - 09:35:01 CDT)
• AutoIMD on VMD 1.8.3
  • John Stone (Thu Mar 03 2005 - 10:42:24 CST)
  • Luis Rosales (Wed Mar 02 2005 - 20:24:46 CST)
• AutoIMD on vmd 1.8.6 IRIX....
  • John Stone (Mon May 14 2007 - 12:52:34 CDT)
  • Luis Rosales (Fri May 11 2007 - 19:48:16 CDT)
• autoimd on windows
  • Anna Modzelewska (Wed Jun 22 2005 - 11:51:22 CDT)
  • Anna Modzelewska (Wed Jun 22 2005 - 05:29:52 CDT)
  • John Stone (Tue Jun 21 2005 - 15:43:11 CDT)
  • Anna Modzelewska (Mon Jun 20 2005 - 06:40:29 CDT)
• AutoIMD with Periodic Boundary Conditions
  • Robert Johnson (Tue Jun 18 2013 - 11:43:13 CDT)
• autoionization error in VMD
  • Ajasja LjubetiÄ� (Fri Jul 12 2013 - 04:53:34 CDT)
  • melis.yildirim_at_boun.edu.tr (Fri Jul 12 2013 - 03:21:25 CDT)
• autoionize
  • Jacopo Sgrignani (Wed Sep 07 2011 - 09:00:02 CDT)
  • Lei Guo (Fri Dec 05 2003 - 17:36:26 CST)
• autoionize "error procesing bonds"
  • John Stone (Wed Mar 22 2006 - 16:58:16 CST)
  • George M Giambasu (Mon Mar 20 2006 - 16:50:28 CST)
• Autoionize / SODIUM
  • Blake Charlebois (Mon Jan 24 2005 - 17:04:58 CST)
  • John Stone (Fri Jan 21 2005 - 17:30:29 CST)
  • Blake Charlebois (Sun Jan 16 2005 - 12:14:04 CST)
• autoionize adds too many ions
  • Goldsmith, Jacob (Wed Jul 20 2011 - 12:10:28 CDT)
  • Leonardo Trabuco (Wed Jul 20 2011 - 10:30:02 CDT)
  • JC Gumbart (Wed Jul 20 2011 - 10:20:35 CDT)
  • Leonardo Trabuco (Wed Jul 20 2011 - 09:41:03 CDT)
  • Edward Lyman (Fri Jul 15 2011 - 14:34:48 CDT)
• autoionize behaviour on big systems
  • John Stone (Mon Aug 28 2006 - 01:21:49 CDT)
  • L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 01:12:18 CDT)
  • John Stone (Mon Aug 28 2006 - 00:59:33 CDT)
  • L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 00:44:24 CDT)
• Autoionize does not neutralize the system
  • Parisa Akhski (Wed Jul 07 2010 - 10:04:12 CDT)
  • Axel Kohlmeyer (Tue Jul 06 2010 - 16:01:03 CDT)
  • John Stone (Tue Jul 06 2010 - 15:39:48 CDT)
  • Parisa Akhski (Tue Jul 06 2010 - 14:36:20 CDT)
  • John Stone (Tue Jul 06 2010 - 10:42:58 CDT)
  • John Stone (Tue Jul 06 2010 - 10:16:43 CDT)
  • Axel Kohlmeyer (Tue Jul 06 2010 - 09:49:19 CDT)
  • Parisa Akhski (Tue Jul 06 2010 - 09:16:20 CDT)
• autoionize error in vmd
  • Tristan Croll (Sat Jul 27 2013 - 15:27:25 CDT)
  • Rajan Vatassery (Fri Jul 26 2013 - 12:55:36 CDT)
  • Revthi Sanker (Fri Jul 26 2013 - 09:53:30 CDT)
  • Jiawei Xu (Fri Jan 11 2013 - 14:50:26 CST)
  • Rajan Vatassery (Fri Jan 11 2013 - 14:44:39 CST)
  • Jiawei Xu (Fri Jan 11 2013 - 14:22:13 CST)
  • Rajan Vatassery (Fri Jan 11 2013 - 14:05:47 CST)
  • Jiawei Xu (Fri Jan 11 2013 - 11:28:46 CST)
  • Shaherin Basith (Fri Jan 11 2013 - 02:06:22 CST)
• autoionize not neutralizing the system
  • Giacomo Fiorin (Mon Aug 07 2017 - 07:18:28 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 23:14:38 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 23:07:36 CDT)
  • Ashar Malik (Sun Aug 06 2017 - 22:41:58 CDT)
  • Axel Kohlmeyer (Sun Aug 06 2017 - 22:26:32 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 21:30:32 CDT)
  • Albers, Thomas (Sun Aug 06 2017 - 12:26:58 CDT)
  • Ashar Malik (Sun Aug 06 2017 - 11:11:45 CDT)
  • Roshan Shrestha (Sun Aug 06 2017 - 11:50:49 CDT)
  • Chitrak Gupta (Sun Aug 06 2017 - 11:50:54 CDT)
  • Giacomo Fiorin (Sun Aug 06 2017 - 10:46:37 CDT)
  • t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 09:51:29 CDT)
• Autoionize plugin
  • Rabab Toubar (Wed Nov 19 2008 - 10:07:33 CST)
  • bo liu (Wed Nov 19 2008 - 08:42:58 CST)
  • JC Gumbart (Wed Nov 19 2008 - 00:23:56 CST)
  • Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
• autoionize plugin parsing error (vmd 1.9.3 )
  • Steven(Yuhang) Wang (Fri Jan 06 2017 - 11:12:14 CST)
  • Jim Phillips (Fri Jan 06 2017 - 10:53:40 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 22:41:02 CST)
  • Peter Freddolino (Wed Jan 04 2017 - 21:23:48 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 20:20:33 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 20:10:38 CST)
  • Peter Freddolino (Wed Jan 04 2017 - 20:11:44 CST)
  • Steven(Yuhang) Wang (Wed Jan 04 2017 - 20:08:33 CST)
  • Peter Freddolino (Wed Jan 04 2017 - 20:01:57 CST)
  • Wang, Steven (Wed Jan 04 2017 - 16:57:19 CST)
• Autoionize plugin problem
  • John Stone (Thu Dec 16 2004 - 11:30:21 CST)
  • Gaurav Sharma (Tue Dec 14 2004 - 12:52:03 CST)
• autoionize plugin..
  • hl332_at_drexel.edu (Mon Jul 10 2006 - 11:38:16 CDT)
• Autoionize question for DNA molecule
  • Parisa Akhski (Fri Sep 17 2010 - 16:11:50 CDT)
  • Peter Freddolino (Tue Sep 14 2010 - 18:55:35 CDT)
  • Parisa Akhski (Tue Sep 14 2010 - 17:45:52 CDT)
  • Eduard Schreiner (Mon Jul 12 2010 - 11:08:02 CDT)
  • Parisa Akhski (Mon Jul 12 2010 - 10:10:11 CDT)
• autoionize script
  • amodzelewska_at_dns.iimcb.gov.pl (Sun May 16 2004 - 13:21:58 CDT)
• Autoionize with non water solvent
  • Georcki Ropon (Sat Nov 20 2021 - 13:35:42 CST)
  • Nathan Kern (Sat Nov 20 2021 - 13:16:21 CST)
  • Francesco Pietra (Sat Nov 20 2021 - 09:11:49 CST)
• autoionize with polyatomic ions
  • Bennion, Brian (Mon Aug 18 2014 - 16:06:29 CDT)
• automate pdb processing
  • Martin, Erik W (Thu Apr 17 2014 - 16:32:13 CDT)
• Automate QwikMD?
  • João Ribeiro KS (Tue Dec 20 2016 - 17:19:22 CST)
  • Vermaas, Joshua (Tue Dec 20 2016 - 16:43:39 CST)
  • Danny Xu (Tue Dec 20 2016 - 15:23:28 CST)
• automated loading
  • Myunggi Yi (Mon Sep 21 2009 - 11:53:53 CDT)
  • Axel Kohlmeyer (Mon Sep 21 2009 - 11:18:17 CDT)
  • John Stone (Mon Sep 21 2009 - 11:17:21 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
  • Myunggi Yi (Mon Sep 21 2009 - 11:01:19 CDT)
• automatic extraction of RMSD values of the heavy atoms of residues from NAMD output?
  • Andras Borosy (Tue Aug 05 2014 - 03:10:51 CDT)
• Automatic loading of mol2 files
  • Peter Freddolino (Wed May 23 2007 - 10:52:12 CDT)
  • FyD (Wed May 23 2007 - 10:42:17 CDT)
• automatic PSF builder
  • Axel Kohlmeyer (Mon Dec 13 2010 - 04:03:50 CST)
  • leila karami (Mon Dec 13 2010 - 02:22:19 CST)
  • Francesco Oteri (Sun Dec 12 2010 - 10:00:52 CST)
  • leila karami (Sun Dec 12 2010 - 08:25:03 CST)
• Automatic PSF Builder Help
  • Peter Freddolino (Mon Aug 06 2007 - 15:59:17 CDT)
  • Audrey Salazar (Mon Aug 06 2007 - 14:47:08 CDT)
  • Audrey Salazar (Mon Aug 06 2007 - 14:27:52 CDT)
  • Peter Freddolino (Mon Aug 06 2007 - 12:45:09 CDT)
  • Axel Kohlmeyer (Mon Aug 06 2007 - 11:29:16 CDT)
  • Peter Freddolino (Mon Aug 06 2007 - 11:46:46 CDT)
  • Audrey Salazar (Mon Aug 06 2007 - 11:16:12 CDT)
• Automatically shutting down VMD after NAMD terminates IMD connection
  • Claw Isthelaw (Sun May 20 2007 - 16:20:30 CDT)
  • John Stone (Sun May 20 2007 - 13:13:04 CDT)
  • Claw Isthelaw (Sat May 19 2007 - 13:23:42 CDT)
• Automatically zoom so that the protein fill the display
  • Emmanuel Levy (Mon Mar 10 2008 - 15:03:40 CDT)
  • John Stone (Mon Mar 10 2008 - 14:17:27 CDT)
  • John Stone (Mon Mar 10 2008 - 14:36:02 CDT)
  • Axel Kohlmeyer (Mon Mar 10 2008 - 13:50:50 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 14:28:30 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 14:30:51 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 13:21:46 CDT)
• automating graphic representations
  • Axel Kohlmeyer (Fri Aug 24 2007 - 13:08:44 CDT)
  • Jim Pfaendtner (Fri Aug 24 2007 - 13:55:00 CDT)
  • Axel Kohlmeyer (Wed Aug 22 2007 - 13:33:03 CDT)
  • John Stone (Wed Aug 22 2007 - 13:44:19 CDT)
  • Jim Pfaendtner (Wed Aug 22 2007 - 13:37:41 CDT)
• Automating VMD
  • Ashar Malik (Thu May 03 2018 - 17:40:36 CDT)
  • Oscar Bastidas (Thu May 03 2018 - 16:51:01 CDT)
• Automation of Analysis from QwikMD and Loading Trajectory Without Water in QwikMD
  • Diego Gomes (Wed Sep 07 2022 - 16:43:28 CDT)
  • Efthymiou, Christos (Thu Sep 01 2022 - 08:48:31 CDT)
• autopfs: unknown atom type error when processing ATP
  • Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
  • Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
  • Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
  • Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
  • Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
  • Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
  • Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
• autopsf
  • Prof. Eddie (Fri Jun 14 2013 - 11:23:39 CDT)
  • Josh Vermaas (Tue Jun 04 2013 - 11:55:58 CDT)
  • Prof. Eddie (Tue Jun 04 2013 - 07:11:31 CDT)
  • Prof. Eddie (Wed May 29 2013 - 08:56:48 CDT)
  • Josh Vermaas (Wed May 29 2013 - 07:52:53 CDT)
  • Prof. Eddie (Tue May 28 2013 - 16:27:32 CDT)
  • Jiawei Xu (Tue May 28 2013 - 15:45:46 CDT)
  • Prof. Eddie (Tue May 28 2013 - 14:43:16 CDT)
  • Donovan B.T. (Fri Apr 20 2012 - 04:29:53 CDT)
  • Peter Freddolino (Fri Jul 20 2007 - 13:59:56 CDT)
  • snoze pa (Fri Jul 20 2007 - 12:42:18 CDT)
  • lily jin (Thu Mar 15 2007 - 17:35:56 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 17:13:38 CDT)
  • Peter Freddolino (Thu Mar 15 2007 - 17:13:00 CDT)
  • lily jin (Thu Mar 15 2007 - 17:02:37 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 16:41:55 CDT)
  • lily jin (Thu Mar 15 2007 - 16:33:48 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 15:56:59 CDT)
  • Peter Freddolino (Thu Mar 15 2007 - 15:29:05 CDT)
  • lily jin (Thu Mar 15 2007 - 15:23:32 CDT)
• Autopsf CGenFF input
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 10:16:30 CDT)
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 09:47:20 CDT)
  • Peter Freddolino (Tue Jul 17 2018 - 09:52:42 CDT)
  • Peter Freddolino (Tue Jul 17 2018 - 09:37:37 CDT)
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 08:56:10 CDT)
  • Peter Freddolino (Tue Jul 17 2018 - 08:00:32 CDT)
  • Stamatia Zavitsanou (Tue Jul 17 2018 - 03:59:29 CDT)
• AutoPSF charge generation
  • Peter Freddolino (Sat Jul 06 2019 - 21:00:48 CDT)
  • Adupa Vasista (Sat Jul 06 2019 - 04:28:55 CDT)
• AutoPSF deleting residues
  • Peter Freddolino (Tue Jun 15 2010 - 20:33:02 CDT)
  • Kelly Leung (Tue Jun 15 2010 - 10:35:38 CDT)
• Autopsf error
  • Amir Zeb (Mon Jul 05 2021 - 21:48:42 CDT)
  • Peter Freddolino (Thu Nov 08 2018 - 11:29:36 CST)
  • FRANCESCO TORRICELLA (Thu Nov 08 2018 - 08:58:57 CST)
  • Tristan Croll (Thu Jul 31 2014 - 20:27:43 CDT)
  • Moumita Saharay (Wed Jul 30 2014 - 06:06:53 CDT)
  • Kukol, Andreas (Wed Jul 30 2014 - 05:12:20 CDT)
• AutoPSF error vecsub
  • Francesco Pietra (Mon Feb 03 2020 - 03:32:49 CST)
  • Peter Freddolino (Sun Feb 02 2020 - 11:19:46 CST)
  • Francesco Pietra (Sun Feb 02 2020 - 09:53:28 CST)
  • Peter Freddolino (Sun Feb 02 2020 - 08:04:37 CST)
  • Francesco Pietra (Sat Feb 01 2020 - 14:59:02 CST)
• AutoPSF error with glycana (end of segment error)
  • Steinar Halldorsson (Thu Oct 25 2018 - 07:25:24 CDT)
  • Rune Thomas Kidmose (Tue Oct 23 2018 - 10:21:44 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 16:22:32 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 11:46:39 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 10:05:01 CDT)
  • Steinar Halldorsson (Mon Oct 22 2018 - 10:16:32 CDT)
  • Steinar Halldorsson (Mon Oct 22 2018 - 08:58:12 CDT)
• autopsf error: failed on end of segment
  • Francesco Pietra (Tue Dec 21 2010 - 11:49:14 CST)
• AutoPSF errors
  • Peter Freddolino (Tue Jun 22 2010 - 20:16:06 CDT)
  • Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
  • Emily Chen (Mon Jun 21 2010 - 14:06:19 CDT)
• autopsf errors in vmd1.8.5
  • Peter Freddolino (Mon Oct 30 2006 - 12:18:43 CST)
  • Brian Bennion (Mon Oct 30 2006 - 12:09:54 CST)
• Autopsf Failed on end of segment
  • Francesco Pietra (Tue Nov 03 2020 - 12:52:28 CST)
  • Peter Freddolino (Tue Nov 03 2020 - 11:07:14 CST)
  • Francesco Pietra (Tue Nov 03 2020 - 06:55:01 CST)
• AutoPSF formatted PDB: wrong residue order
  • Bryan Roessler (Fri Feb 02 2018 - 14:04:43 CST)
  • Pawel Kedzierski (Fri Feb 02 2018 - 05:45:47 CST)
  • Bryan Roessler (Fri Feb 02 2018 - 04:09:33 CST)
• autopsf from console
  • Peter Freddolino (Thu Jul 17 2008 - 12:52:33 CDT)
  • brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
• autopsf generator need at least one atom error
  • John Stone (Sun Jan 24 2010 - 13:51:27 CST)
  • Ronald Salesky (Sun Jan 24 2010 - 12:29:12 CST)
• autopsf needs at least one atom error
  • John Stone (Sun Jan 24 2010 - 14:18:22 CST)
  • Ronald Salesky (Sun Jan 24 2010 - 14:09:57 CST)
  • Peter Freddolino (Sun Jan 24 2010 - 13:55:07 CST)
  • Ronald Salesky (Sun Jan 24 2010 - 12:43:51 CST)
• Autopsf Not Generating Atom Numbers Beyond 99999
  • Stefan Lyne Oliver (Wed Mar 01 2023 - 13:41:26 CST)
• Autopsf problem
  • Kevin Chan (Tue Sep 15 2015 - 21:30:24 CDT)
  • Kevin Chan (Tue Sep 15 2015 - 21:24:16 CDT)
  • Josh Vermaas (Tue Sep 15 2015 - 09:48:02 CDT)
  • Kevin C Chan (Tue Sep 15 2015 - 08:53:57 CDT)
• autopsf question
  • McGuire, Kelly (Sat Feb 05 2022 - 19:22:13 CST)
  • Peter Freddolino (Sat Feb 05 2022 - 18:27:49 CST)
  • McGuire, Kelly (Sat Feb 05 2022 - 16:33:09 CST)
• autoPSF with a POPC membrane
  • Peter Freddolino (Tue May 08 2007 - 18:19:12 CDT)
  • Peter Freddolino (Mon May 07 2007 - 20:40:47 CDT)
  • Stephen M. Dutz (Mon May 07 2007 - 19:37:25 CDT)
• autopsf with many modifiers
  • Francesco Pietra (Sat Sep 11 2021 - 09:21:24 CDT)
• autopsf-patches C++ error 'expected integer but got "" ""'
  • Peter Freddolino (Thu Feb 24 2011 - 21:28:18 CST)
  • John Stone (Wed Feb 23 2011 - 16:54:55 CST)
  • Francesco Pietra (Wed Feb 23 2011 - 15:03:16 CST)
  • Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
  • John Stone (Wed Feb 23 2011 - 10:34:09 CST)
  • John Stone (Wed Feb 23 2011 - 10:47:31 CST)
  • Francesco Pietra (Wed Feb 23 2011 - 10:21:11 CST)
• autopsf: can't read "logfilename"
  • John Stone (Thu Mar 29 2012 - 10:44:28 CDT)
  • Francesco Pietra (Sat Mar 24 2012 - 11:46:15 CDT)
• autopsfgen looking for wrong angle
  • Francesco Pietra (Thu Nov 18 2021 - 02:21:33 CST)
• Autopsfgen verbose error output?
  • Peter Freddolino (Wed May 01 2019 - 21:26:03 CDT)
  • Francesco Pietra (Wed May 01 2019 - 16:56:22 CDT)
  • Peter Freddolino (Wed May 01 2019 - 14:54:52 CDT)
  • Francesco Pietra (Wed May 01 2019 - 13:24:31 CDT)
• autostereograms in VMD?
  • John Stone (Mon Jul 05 2004 - 13:52:38 CDT)
  • Karsten Suhre (Fri Jul 02 2004 - 02:42:11 CDT)
• Average angle between the lipid dipole vector and the bilayer normal.
  • Andrés Morales (Wed Apr 11 2012 - 16:43:01 CDT)
  • John Stone (Wed Apr 11 2012 - 14:06:52 CDT)
  • Andrés Morales (Mon Apr 09 2012 - 12:55:17 CDT)
  • Andrés Morales (Mon Apr 09 2012 - 12:45:44 CDT)
• average area per lipid
  • Stephen Dutz (Mon Mar 03 2008 - 16:06:44 CST)
  • Stephen Dutz (Mon Mar 03 2008 - 11:14:11 CST)
• Average coordinates
  • Axel Kohlmeyer (Thu Jun 24 2004 - 23:48:36 CDT)
  • Ahmet Bakan (Thu Jun 24 2004 - 13:51:12 CDT)
• average pdb from dcd file
  • sajad falsafi (Thu Oct 27 2011 - 11:40:38 CDT)
  • Bjoern Olausson (Thu Oct 27 2011 - 09:54:06 CDT)
  • hamze rahimi (Thu Oct 27 2011 - 07:39:53 CDT)
• Average pocket size?
  • Thomas Evangelidis (Wed Apr 18 2012 - 13:51:11 CDT)
  • patrick wintrode (Wed Apr 18 2012 - 11:45:04 CDT)
• Average position of atom set
  • Leonardo Trabuco (Tue Nov 04 2008 - 20:11:01 CST)
  • Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
• average radius of cavity over many frames from hole
  • maria goranovic (Wed Jul 06 2011 - 02:28:49 CDT)
• Average strcuture
  • Andres Morales N (Tue May 19 2009 - 10:21:28 CDT)
  • jen hsin (Tue May 19 2009 - 09:08:41 CDT)
  • Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
• Average structure
  • Ashar Malik (Wed Mar 21 2018 - 02:55:20 CDT)
  • Williams Miranda (Wed Mar 21 2018 - 01:37:13 CDT)
  • Peter Freddolino (Thu Mar 15 2007 - 14:39:21 CDT)
  • Per Jr. Greisen (Thu Mar 15 2007 - 14:14:20 CDT)
  • Eduard Schreiner (Tue Feb 13 2007 - 06:52:21 CST)
  • dimka (Mon Feb 12 2007 - 13:42:33 CST)
• Average structure and NamdEnergy
  • John Stone (Thu Sep 17 2009 - 11:35:58 CDT)
  • Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
  • Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
• Average Structure and RMSD
  • John Stone (Wed Jun 21 2006 - 13:29:44 CDT)
  • griadi_at_utalca.cl (Wed Jun 21 2006 - 11:28:33 CDT)
• average structure generation from trajectory
  • Axel Kohlmeyer (Thu Apr 11 2013 - 03:16:30 CDT)
  • Sindrila Dutta Banik (Thu Apr 11 2013 - 02:00:10 CDT)
• average structure script
  • Toni Giorgino (Fri Nov 25 2011 - 11:21:28 CST)
  • Ajasja LjubetiÄ� (Fri Nov 25 2011 - 11:09:59 CST)
  • flavio seixas (Fri Nov 25 2011 - 09:52:40 CST)
• Average structure using multiple frame trajectory
  • Ashar Malik (Thu May 25 2017 - 06:07:34 CDT)
  • Shashank Ranjan Srivastava (Thu May 25 2017 - 05:24:07 CDT)
• average structure/solute and solvent
  • Alex Liu (Wed Nov 24 2010 - 10:19:28 CST)
  • Alex Liu (Tue Nov 23 2010 - 09:21:31 CST)
• average z-coordinate of a selection
  • Nitin Bhardwaj (Tue Dec 19 2006 - 11:08:42 CST)
  • Nitin Bhardwaj (Tue Dec 19 2006 - 10:54:29 CST)
• averaged structure
  • Axel Kohlmeyer (Tue Aug 12 2014 - 14:18:33 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 12:47:56 CDT)
  • Irene Newhouse (Tue Aug 12 2014 - 12:45:19 CDT)
  • Axel Kohlmeyer (Tue Aug 12 2014 - 12:35:25 CDT)
  • Cesar Millan (Tue Aug 12 2014 - 12:15:11 CDT)
  • Ajasja LjubetiÄ� (Tue Aug 12 2014 - 12:21:28 CDT)
  • John Stone (Tue Aug 12 2014 - 12:05:15 CDT)
  • Josh Vermaas (Tue Aug 12 2014 - 11:49:12 CDT)
  • John Stone (Tue Aug 12 2014 - 11:54:34 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 12:01:02 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 11:42:05 CDT)
  • Josh Vermaas (Tue Aug 12 2014 - 09:36:49 CDT)
  • John Stone (Tue Aug 12 2014 - 10:05:56 CDT)
  • Natal Kanaan (Tue Aug 12 2014 - 06:30:30 CDT)
• Averaging volmaps
  • Cesar Luis Avila (Thu Sep 06 2007 - 10:11:36 CDT)
• Avoid atom indices reassignment
  • Liel Sapir (Wed Dec 15 2021 - 03:04:01 CST)
  • Jérôme Hénin (Mon Dec 13 2021 - 09:42:33 CST)
  • Liel Sapir (Mon Dec 13 2021 - 08:46:42 CST)
• Avoid vmd closing with script
  • Guenegou, Guillaume [ORDFR] (Tue Jul 26 2011 - 01:54:44 CDT)
  • Axel Kohlmeyer (Mon Jul 25 2011 - 09:31:45 CDT)
  • Guenegou, Guillaume [ORDFR] (Mon Jul 25 2011 - 08:31:01 CDT)
• avoiding distance based bond search when reading a PDB file
  • John Stone (Thu Nov 14 2002 - 15:25:53 CST)
  • Christophe Guilbert (Thu Nov 14 2002 - 14:31:17 CST)
• AVX512 support on Linux.
  • Josh Vermaas (Thu Nov 19 2020 - 11:15:29 CST)
  • John Stone (Thu Nov 19 2020 - 11:04:31 CST)
  • Zhu Liang (Thu Nov 19 2020 - 10:33:42 CST)
• AW: "OpenGL Display" and "VMD Main" windows; size and location on launch
  • Norman Geist (Mon Sep 29 2014 - 00:49:34 CDT)
• AW: A fill for "bodies" build out of surfacs
  • Daniel Möller (Mon May 07 2018 - 16:31:37 CDT)
• AW: Accessible volume around an atom
  • Norman Geist (Thu Aug 28 2014 - 03:41:21 CDT)
• AW: Affordable 3D stereo.
  • Norman Geist (Wed Jan 31 2018 - 01:08:09 CST)
• AW: Align only translation not rotation
  • Norman Geist (Tue Sep 15 2015 - 01:40:02 CDT)
• AW: Align specific residues of two structures
  • Norman Geist (Mon Mar 31 2014 - 00:35:37 CDT)
• AW: Animate Molekul
  • Norman Geist (Tue Apr 05 2016 - 09:53:28 CDT)
• AW: Antw: AW: Oculus Rift DK2
  • Christian Wohlschlager (Wed Dec 10 2014 - 04:49:00 CST)
  • Norman Geist (Mon Dec 01 2014 - 03:15:36 CST)
• AW: Any interest in VMD supporting mirror reflections w/ ray tracing?
  • Daniel Möller (Fri Nov 28 2014 - 06:53:01 CST)
  • Norman Geist (Thu Nov 27 2014 - 10:31:26 CST)
• AW: Assigning different temperatures in the same simulaiton
  • Norman Geist (Tue Apr 01 2014 - 00:21:03 CDT)
  • Norman Geist (Tue Apr 01 2014 - 00:07:02 CDT)
• AW: Average structure
  • Norman Geist (Wed Mar 21 2018 - 04:02:14 CDT)
• AW: AW: AW: How to smooth atom labels in a MD trajectory?
  • sunyeping (Mon Aug 22 2016 - 09:12:01 CDT)
  • Norman Geist (Mon Aug 22 2016 - 08:32:34 CDT)
  • Norman Geist (Mon Aug 22 2016 - 08:42:30 CDT)
• AW: AW: AW: VMD warnings
  • Norman Geist (Mon Oct 27 2014 - 03:05:14 CDT)
• AW: AW: AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • Norman Geist (Wed Dec 11 2013 - 01:06:44 CST)
• AW: AW: hydrogen bond criteria
  • Hamid (Fri Dec 06 2013 - 13:42:53 CST)
  • Norman Geist (Fri Dec 06 2013 - 01:14:33 CST)
• AW: AW: namd-l: FATAL ERROR: seek failed while writing DCD file: No such file or directory
  • John Stone (Fri Dec 19 2014 - 12:10:47 CST)
  • Norman Geist (Fri Dec 19 2014 - 02:45:26 CST)
• AW: AW: Simplest file format that includes atom color?
  • Philippe Bopp (Thu Feb 13 2014 - 06:34:59 CST)
  • Norman Geist (Thu Feb 13 2014 - 03:28:18 CST)
• AW: AW: The quality of movie made by VMD
  • andrea spitaleri (Thu Jan 22 2015 - 04:40:35 CST)
  • Norman Geist (Wed Jan 21 2015 - 09:18:17 CST)
• AW: AW: VMD warnings
  • Norman Geist (Fri Oct 24 2014 - 13:01:27 CDT)
• AW: AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • John Stone (Wed Dec 11 2013 - 01:10:51 CST)
  • Norman Geist (Tue Dec 10 2013 - 00:57:37 CST)
• AW: AW: why vmd cannot load the dcd trajectory?
  • Norman Geist (Tue Jan 10 2017 - 03:18:54 CST)
• AW: BUG(s): vmd-1.9.2b
  • Norman Geist (Thu Oct 30 2014 - 09:25:36 CDT)
• AW: BUG? Hbond rep brakes RowInterleaved Stereo VMD 1.9.2a35
  • Norman Geist (Mon May 19 2014 - 02:33:46 CDT)
• AW: Building NAMD 2.12 from Source with IB and CUDA
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 02 2017 - 05:53:58 CST)
  • Norman Geist (Thu Mar 02 2017 - 04:37:40 CST)
• AW: calculating total energy
  • Norman Geist (Mon Sep 16 2013 - 01:44:38 CDT)
• AW: Cannot start VMD in background from a script
  • Norman Geist (Mon Jun 23 2014 - 03:29:50 CDT)
• AW: Center camera rotation on a molid
  • Norman Geist (Thu Mar 02 2017 - 07:30:55 CST)
• AW: Certain combinations of X-server and X-client do not allow VMD to start
  • Norman Geist (Tue Sep 17 2013 - 05:23:26 CDT)
• AW: Change bond per atom limit of VMD
  • Norman Geist (Wed Jan 07 2015 - 05:41:11 CST)
• AW: Change transparency along a trajectory
  • Norman Geist (Mon Dec 09 2013 - 08:58:33 CST)
• AW: changing chain id and pdb generating
  • Norman Geist (Thu Dec 12 2013 - 06:55:01 CST)
• AW: code precision problem
  • Norman Geist (Thu Apr 17 2014 - 01:29:04 CDT)
• AW: coloring scheme in "VolumeSlice"
  • Norman Geist (Mon Jan 19 2015 - 02:34:06 CST)
• AW: CUDA acceleration for Tachyon rendering?
  • Norman Geist (Fri Dec 02 2016 - 01:51:05 CST)
• AW: Define the percentage of zoom
  • Norman Geist (Tue Feb 23 2016 - 01:35:16 CST)
• AW: Defining a layer for a micelle
  • Norman Geist (Tue May 14 2019 - 01:17:08 CDT)
• AW: Display representations with Tk Console
  • Daniel Möller (Thu Oct 11 2018 - 14:54:29 CDT)
• AW: Do I need a "professional" graphics card?
  • Norman Geist (Mon Feb 10 2014 - 01:43:22 CST)
  • Norman Geist (Mon Feb 10 2014 - 01:38:00 CST)
• AW: Does the VMD Linux 64-bit version perform better than the Windows 32-bit when visualizing large molecules?
  • Norman Geist (Wed Aug 06 2014 - 00:35:18 CDT)
• AW: Draw arrows in trajectory file
  • Norman Geist (Tue Dec 20 2016 - 07:55:37 CST)
  • Norman Geist (Tue Dec 20 2016 - 02:37:41 CST)
• AW: Error connecting to localhost on port 3000 and IMD connection ended unexpectedly; connection terminated.
  • Norman Geist (Thu Oct 27 2016 - 07:50:51 CDT)
• AW: Error: not possible to build nodeSelString: () and ()
  • John Stone (Tue Jul 03 2018 - 11:14:40 CDT)
  • Sophie Mader (Thu Jun 28 2018 - 07:37:02 CDT)
• AW: Exactly align view direction to coordinate axes
  • Norman Geist (Thu Jun 30 2016 - 01:30:04 CDT)
• AW: Fast PBC wrapping in VMD
  • Norman Geist (Thu Nov 17 2016 - 02:05:46 CST)
• AW: Feature Request: Stride on vmd commandline startup
  • Norman Geist (Wed Jan 14 2015 - 02:23:12 CST)
• AW: fftk-charges
  • Norman Geist (Mon Oct 21 2013 - 07:59:53 CDT)
• AW: format I should use if I have different total number of atoms for each timesteps
  • Norman Geist (Fri Dec 12 2014 - 02:43:08 CST)
• AW: Fwd: distance using pbc
  • Norman Geist (Wed Mar 02 2016 - 01:53:56 CST)
• AW: Fwd: VMD 1.9.2 released!
  • Norman Geist (Tue Jan 13 2015 - 01:16:34 CST)
• AW: Gaussian *.log/out visualize
  • Norman Geist (Mon Mar 21 2016 - 02:41:13 CDT)
• AW: Generating PSF for several proteins in one shot
  • Daniel Möller (Sat Aug 08 2015 - 05:39:58 CDT)
• AW: Get num. of residues
  • Norman Geist (Wed Mar 19 2014 - 03:56:12 CDT)
• AW: get resname from resid
  • Norman Geist (Tue Apr 15 2014 - 06:30:32 CDT)
• AW: GPU accelerated MD
  • Norman Geist (Fri Oct 23 2015 - 07:18:01 CDT)
• AW: graphics in VMD and overlay
  • Norman Geist (Wed Nov 15 2017 - 01:24:53 CST)
• AW: H-Bonds not shown when loading by topo readlammpsdata
  • Norman Geist (Mon Dec 08 2014 - 01:49:11 CST)
• AW: HBonds Plugin - Hbonds criteria
  • Norman Geist (Wed Jan 25 2017 - 02:19:24 CST)
• AW: hiding atoms outside the unit cell
  • Norman Geist (Fri Jun 10 2016 - 01:55:01 CDT)
• AW: how can we improve it in VMD?
  • Norman Geist (Tue Dec 10 2013 - 08:13:44 CST)
• AW: How do I define "collision only" atoms using MSMS?
  • Norman Geist (Thu Aug 20 2020 - 02:24:05 CDT)
• AW: How to constrain a atom
  • Norman Geist (Mon Jan 05 2015 - 00:54:35 CST)
• AW: how to control the superposition (measure fit) ?
  • Vlad Cojocaru (Sat Apr 12 2014 - 05:49:13 CDT)
  • Norman Geist (Fri Apr 11 2014 - 09:20:06 CDT)
• AW: How to create an aggregation of molecules with VMD?
  • Daniel Möller (Tue May 05 2015 - 02:13:30 CDT)
• AW: how to enable multiple core rendering?
  • John Stone (Thu Sep 05 2013 - 09:43:18 CDT)
  • Albert (Thu Sep 05 2013 - 04:02:10 CDT)
• AW: How to increase the number of core
  • Norman Geist (Wed Feb 26 2020 - 01:59:33 CST)
• AW: How to make solid surfaces work with non-orthorhombic cells
  • Norman Geist (Fri Nov 28 2014 - 05:49:09 CST)
• AW: how to make the structures in the movie look better
  • Sebastián Gutiérrez (Mon Oct 20 2014 - 15:10:32 CDT)
  • Felipe Merino (Mon Sep 29 2014 - 09:28:49 CDT)
  • Norman Geist (Mon Sep 29 2014 - 07:58:00 CDT)
• AW: how to measure the thickness of the water shell
  • sunyeping (Tue Oct 27 2015 - 09:11:59 CDT)
  • Norman Geist (Tue Oct 27 2015 - 06:28:09 CDT)
• AW: How to remove particular residues and then view "ramachandran plot" in VMD
  • Norman Geist (Thu Oct 09 2014 - 07:05:14 CDT)
• AW: How to smooth atom labels in a MD trajectory?
  • sunyeping (Mon Aug 22 2016 - 07:17:19 CDT)
  • Norman Geist (Mon Aug 22 2016 - 01:04:04 CDT)
• AW: How to work on multiple pdbs by tcl script?
  • Norman Geist (Tue Mar 22 2016 - 07:04:36 CDT)
• AW: hydrogen bond criteria
  • Norman Geist (Thu Dec 05 2013 - 07:10:21 CST)
• AW: ion visualization in VMD
  • andrea spitaleri (Thu Jan 22 2015 - 04:30:00 CST)
  • Norman Geist (Thu Jan 22 2015 - 03:34:26 CST)
• AW: IR Spectroscopy plugin questions
  • Daniel Möller (Thu Jun 04 2015 - 13:51:07 CDT)
  • Daniel Möller (Thu Jun 04 2015 - 12:57:00 CDT)
  • Daniel Möller (Thu Jun 04 2015 - 05:35:50 CDT)
• AW: Isosurface Render - No Color?
  • Daniel Möller (Tue Jun 21 2016 - 07:45:00 CDT)
• AW: issue drawing a PBC box centered on a selection
  • Daniel Möller (Fri Apr 01 2016 - 03:10:31 CDT)
• AW: loading electron density maps with a script
  • Norman Geist (Fri Feb 05 2016 - 02:30:05 CST)
  • Norman Geist (Thu Feb 04 2016 - 01:33:21 CST)
• AW: loading trajectory
  • Norman Geist (Tue Oct 22 2013 - 10:31:56 CDT)
• AW: log colorscale
  • Norman Geist (Mon Oct 06 2014 - 05:25:26 CDT)
• AW: making a movie in a tcl script using graphics commands
  • Norman Geist (Fri Jan 29 2016 - 05:02:16 CST)
• AW: making a movie of a atomselection of a very large trajectory
  • Norman Geist (Wed Mar 30 2016 - 03:57:05 CDT)
• AW: making self-adjustable high resolution images
  • Norman Geist (Wed Jan 28 2015 - 06:24:51 CST)
• AW: manually change secondary structure
  • Norman Geist (Mon Feb 24 2014 - 00:06:29 CST)
• AW: Measure Center Question
  • Norman Geist (Sun Oct 21 2018 - 04:02:15 CDT)
• AW: Measure Distance Script Question
  • Norman Geist (Fri Apr 27 2018 - 02:07:09 CDT)
• AW: measure Hbond and orient (with vec {0 0 1}) of a selected molecule
  • Norman Geist (Fri Apr 25 2014 - 06:36:35 CDT)
  • Norman Geist (Fri Apr 25 2014 - 05:39:11 CDT)
  • Norman Geist (Fri Apr 25 2014 - 02:49:20 CDT)
  • Norman Geist (Fri Apr 25 2014 - 01:13:38 CDT)
• AW: merging independent dcd files,
  • Norman Geist (Thu Jul 28 2016 - 02:42:45 CDT)
  • Norman Geist (Wed Jul 27 2016 - 02:04:09 CDT)
• AW: moving atoms and updating distances
  • Norman Geist (Mon Feb 15 2016 - 00:14:22 CST)
• AW: NAMD 2.11 Cuda does not work with Quadro FX 3800
  • Norman Geist (Sun Mar 13 2016 - 12:37:40 CDT)
• AW: namd-l: Solvation in non standard solvent
  • Josh Vermaas (Fri Feb 14 2014 - 12:41:36 CST)
  • Tim Lo (Fri Feb 14 2014 - 09:23:50 CST)
  • Norman Geist (Fri Feb 14 2014 - 06:47:51 CST)
• AW: namd2.exe has stopped working - NAMDEnergy
  • Daniel Möller (Tue Feb 03 2015 - 06:21:10 CST)
• AW: Native contacts tcl script crashed
  • Norman Geist (Thu Feb 18 2021 - 01:53:14 CST)
• AW: new structure file
  • Norman Geist (Tue Dec 01 2015 - 01:26:52 CST)
  • Norman Geist (Mon Nov 30 2015 - 23:51:22 CST)
• AW: number of water molecules within 5 angstroms of the ligand
  • Norman Geist (Wed May 07 2014 - 07:47:46 CDT)
  • Norman Geist (Wed May 07 2014 - 01:56:50 CDT)
  • Norman Geist (Tue May 06 2014 - 01:44:43 CDT)
  • Norman Geist (Mon May 05 2014 - 05:09:05 CDT)
  • Norman Geist (Mon May 05 2014 - 05:16:47 CDT)
• AW: obtain a list of residue numbers
  • Thomas C. Bishop (Tue Jul 08 2014 - 09:59:41 CDT)
  • Norman Geist (Tue Jul 08 2014 - 00:03:24 CDT)
• AW: Obtaining VMD view matrices for tcl script
  • Rune Thomas Kidmose (Mon Feb 19 2018 - 04:15:43 CST)
  • Norman Geist (Mon Feb 19 2018 - 02:39:47 CST)
• AW: Oculus Rift DK2
  • Norman Geist (Fri Nov 28 2014 - 05:33:58 CST)
• AW: pbc to keep membrane in center
  • Norman Geist (Wed Mar 02 2016 - 01:41:01 CST)
• AW: pbc wrap -center com
  • Norman Geist (Mon May 26 2014 - 02:20:27 CDT)
  • Norman Geist (Thu May 22 2014 - 06:10:23 CDT)
• AW: PhD position in Computational Structural Biology at MPI Muenster
  • Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
• AW: printing out trajectories with some random indices of atoms renamed frame by frame
  • Norman Geist (Mon Mar 07 2016 - 01:07:22 CST)
• AW: Problem with assignation of secondary structure in VMD
  • Matic Kisovec (Thu May 07 2015 - 07:48:28 CDT)
  • Stefan Doerr (Thu May 07 2015 - 04:34:02 CDT)
  • Matic Kisovec (Thu May 07 2015 - 00:41:07 CDT)
• AW: Problem with Kinetic Energy of Atomselection
  • Norman Geist (Wed Jan 07 2015 - 02:58:12 CST)
• AW: program errors
  • Norman Geist (Mon Dec 01 2014 - 02:09:08 CST)
• AW: Protein went out of the Box
  • Norman Geist (Wed Nov 12 2014 - 00:15:06 CST)
• AW: Quad buffered stereo from Quadro M4000 to HDMI monitor
  • Vlad Cojocaru (Tue Jan 17 2017 - 07:55:03 CST)
  • Greipel.Joachim_at_mh-hannover.de (Tue Jan 17 2017 - 07:12:12 CST)
• AW: query regarding phi-psi range for asigning secondary structure
  • Norman Geist (Mon Oct 12 2015 - 01:44:23 CDT)
  • Norman Geist (Fri Oct 09 2015 - 05:29:00 CDT)
  • Norman Geist (Fri Oct 09 2015 - 02:56:42 CDT)
• AW: Question
  • Norman Geist (Tue Dec 16 2014 - 04:03:18 CST)
• AW: question about reading more volumes via atomselect or removing of them
  • Daniel Möller (Thu Jan 14 2016 - 05:37:52 CST)
• AW: Re-centering protein molecule
  • Norman Geist (Wed Jan 28 2015 - 07:26:42 CST)
• AW: reg extracting coordinates for first water shell.
  • Norman Geist (Tue Feb 11 2014 - 09:38:29 CST)
• AW: Reg: Peptide dimer
  • Norman Geist (Tue Sep 30 2014 - 08:49:55 CDT)
• AW: regarding the coordinate transformation on a curved surface to plane surface
  • Norman Geist (Wed Jan 09 2019 - 02:13:09 CST)
• AW: Rendering snapshots
  • Norman Geist (Wed Aug 13 2014 - 11:56:14 CDT)
  • Norman Geist (Tue Aug 12 2014 - 10:57:54 CDT)
• AW: Residue numbers in outfiles PDB/GRO
  • Norman Geist (Fri Apr 01 2016 - 01:54:51 CDT)
  • Daniel Möller (Thu Mar 31 2016 - 13:31:36 CDT)
• AW: RE： select all residues in a molecule
  • Norman Geist (Mon Jun 30 2014 - 02:48:45 CDT)
• AW: SASA area
  • Norman Geist (Wed Feb 01 2017 - 01:44:51 CST)
  • Norman Geist (Tue Jan 31 2017 - 09:35:48 CST)
  • Norman Geist (Tue Jan 31 2017 - 05:05:52 CST)
• AW: Scale the molecule
  • Norman Geist (Wed Oct 15 2014 - 05:25:25 CDT)
• AW: secondary structure calculation at certain frame
  • Norman Geist (Wed Jul 09 2014 - 02:26:45 CDT)
• AW: secondary structure inconsistency
  • Norman Geist (Thu Apr 03 2014 - 00:40:31 CDT)
• AW: Secondary structure representation stays static
  • Daniel Möller (Mon Aug 27 2018 - 04:31:42 CDT)
• AW: select all residues in a molecule
  • Norman Geist (Mon Jun 30 2014 - 00:19:07 CDT)
• AW: select atoms within a sphere - atomselect
  • Norman Geist (Mon Jan 25 2016 - 01:09:42 CST)
• AW: Selecting atoms based on the charges
  • Norman Geist (Tue Nov 11 2014 - 03:32:24 CST)
• AW: Selecting atoms of same type in a certain distance (between X and Y angstroms away)
  • Norman Geist (Thu Jun 23 2016 - 01:22:06 CDT)
  • Norman Geist (Wed Jun 22 2016 - 10:58:55 CDT)
• AW: setting up a 4k HD TV for passive stereoscopic 3d
  • Norman Geist (Fri Apr 08 2016 - 01:46:12 CDT)
  • Norman Geist (Thu Apr 07 2016 - 00:30:41 CDT)
• AW: Simplest file format that includes atom color?
  • Norman Geist (Mon Feb 17 2014 - 06:08:07 CST)
  • Norman Geist (Mon Feb 17 2014 - 05:36:01 CST)
  • Olaf Lenz (Thu Feb 13 2014 - 04:42:45 CST)
  • Arham Amouie (Thu Feb 13 2014 - 02:51:07 CST)
  • Norman Geist (Thu Feb 13 2014 - 00:20:11 CST)
• AW: Sodium within distance
  • Thomas C. Bishop (Wed Jul 08 2015 - 09:51:10 CDT)
  • Daniel Möller (Tue Jul 07 2015 - 03:47:08 CDT)
• AW: speed of pbc join is slow
  • Norman Geist (Wed Mar 16 2016 - 04:52:28 CDT)
• AW: SScache performance; fast secondary structure assignment
  • Norman Geist (Tue Feb 04 2014 - 08:00:29 CST)
• AW: Superimpose Models
  • Norman Geist (Thu Nov 24 2016 - 01:39:44 CST)
• AW: Tachyon transparency and depth cueing
  • Tristan Croll (Thu Aug 21 2014 - 18:33:44 CDT)
  • John Stone (Thu Aug 21 2014 - 08:34:40 CDT)
  • Tristan Croll (Thu Aug 21 2014 - 05:15:30 CDT)
  • Norman Geist (Thu Aug 21 2014 - 04:42:53 CDT)
• AW: Tachyon-Optix failure when SSH X11
  • Norman Geist (Wed Oct 29 2014 - 03:01:50 CDT)
  • Norman Geist (Tue Oct 28 2014 - 09:31:36 CDT)
  • Norman Geist (Tue Oct 28 2014 - 08:57:59 CDT)
  • Norman Geist (Fri Oct 24 2014 - 07:15:21 CDT)
  • Norman Geist (Fri Oct 24 2014 - 02:10:23 CDT)
  • Norman Geist (Thu Oct 23 2014 - 10:48:28 CDT)
• AW: tcl command to write amber format files
  • Norman Geist (Wed Jan 27 2016 - 03:12:33 CST)
  • Norman Geist (Wed Jan 27 2016 - 03:10:18 CST)
• AW: tcl script for averaging a parameter along length
  • Norman Geist (Thu Jan 22 2015 - 06:11:42 CST)
• AW: TCL script to track molecules moving within a specified region each time frame
  • Norman Geist (Tue May 17 2016 - 00:02:49 CDT)
• AW: Tcl scripting - Coloring residues by frame along trajectory
  • Norman Geist (Mon Aug 11 2014 - 00:29:19 CDT)
• AW: TCL scripting question: how to make a list of atomselections persistent?
  • Tristan Croll (Fri Mar 28 2014 - 23:19:50 CDT)
  • Ivan Gregoretti (Fri Mar 28 2014 - 09:06:56 CDT)
  • Tristan Croll (Fri Mar 28 2014 - 03:45:22 CDT)
  • Norman Geist (Fri Mar 28 2014 - 03:02:24 CDT)
  • Norman Geist (Fri Mar 28 2014 - 03:00:02 CDT)
• AW: The quality of movie made by VMD
  • sunyeping (Wed Jan 21 2015 - 08:30:19 CST)
  • Norman Geist (Wed Jan 21 2015 - 03:42:46 CST)
  • Norman Geist (Wed Jan 21 2015 - 02:20:22 CST)
  • Daniel Möller (Mon Jan 19 2015 - 07:18:15 CST)
  • Norman Geist (Mon Jan 19 2015 - 02:41:23 CST)
• AW: the usage of measure bond
  • Sunyeping (Mon Jan 05 2015 - 01:31:39 CST)
  • Norman Geist (Mon Jan 05 2015 - 00:50:46 CST)
• AW: To the developers: Get current zoom value (scale)
  • Norman Geist (Fri Aug 08 2014 - 05:05:13 CDT)
• AW: To the developers: TCL implementation of autofit zoom
  • Norman Geist (Mon Aug 11 2014 - 05:04:29 CDT)
  • Norman Geist (Mon Aug 11 2014 - 00:24:13 CDT)
  • Norman Geist (Mon Aug 11 2014 - 00:22:42 CDT)
• AW: Transparency rendering by Tachyon
  • Norman Geist (Mon Oct 13 2014 - 09:03:37 CDT)
  • Norman Geist (Mon Oct 13 2014 - 01:52:28 CDT)
• AW: Unable to visualize my polymer chains generated using RIS theory using VMD properly
  • Norman Geist (Wed Mar 16 2016 - 04:56:34 CDT)
  • Norman Geist (Tue Mar 15 2016 - 02:53:21 CDT)
• AW: Userani.tcl script jumps frame after no play
  • Norman Geist (Thu Aug 16 2018 - 01:41:22 CDT)
• AW: veldcd file
  • Norman Geist (Thu Jan 05 2017 - 04:49:12 CST)
• AW: Visualize a SMILES string
  • Norman Geist (Tue Apr 29 2014 - 10:01:56 CDT)
• AW: Visualize temperature
  • Norman Geist (Mon Aug 21 2017 - 00:08:08 CDT)
• AW: VMD 3D movies rendering
  • Daniel Hornburg (Thu Aug 19 2010 - 03:23:43 CDT)
  • Daniel Hornburg (Wed Aug 18 2010 - 02:17:49 CDT)
  • Daniel Hornburg (Tue Aug 17 2010 - 10:50:30 CDT)
  • Daniel Hornburg (Tue Aug 17 2010 - 05:43:35 CDT)
• AW: vmd and proxy settings
  • Greipel.Joachim_at_mh-hannover.de (Wed Mar 02 2016 - 03:42:26 CST)
  • Greipel.Joachim_at_mh-hannover.de (Wed Mar 02 2016 - 01:21:53 CST)
• AW: VMD crash on large DCD files.
  • Norman Geist (Thu Jan 30 2014 - 02:17:24 CST)
• AW: VMD crashing when loading prmtop files
  • Norman Geist (Wed Dec 17 2014 - 04:03:32 CST)
• AW: VMD TkConsole command
  • Daniel Möller (Thu Jan 08 2015 - 14:14:11 CST)
  • Norman Geist (Thu Jan 08 2015 - 09:17:15 CST)
  • Norman Geist (Thu Jan 08 2015 - 03:00:37 CST)
• AW: VMD warnings
  • Norman Geist (Fri Oct 24 2014 - 05:05:16 CDT)
• AW: VMD with 3D TV
  • Norman Geist (Wed Dec 17 2014 - 10:34:14 CST)
  • Norman Geist (Mon Dec 15 2014 - 01:43:12 CST)
• AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • Norman Geist (Mon Dec 09 2013 - 01:25:59 CST)
• AW: vmd-I: Fatal Error: Unable to Open CHARMM Parameter File
  • Daniel Möller (Tue Feb 03 2015 - 04:02:56 CST)
• AW: volumetric maps
  • markus.mooslechner_at_orf.at (Fri Oct 03 2008 - 05:11:50 CDT)
• AW: water molecules amber force field
  • Daniel Möller (Thu Apr 12 2018 - 17:46:58 CDT)
• AW: WG: vmd and proxy settings
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 03 2016 - 01:12:02 CST)
• AW: WG: VMD mismatch between CUDA runtime and GPU driver
  • Greipel.Joachim_at_mh-hannover.de (Fri Jul 19 2013 - 01:04:54 CDT)
• AW: why vmd cannot load the dcd trajectory?
  • Norman Geist (Tue Jan 10 2017 - 07:20:23 CST)
  • sunyeping (Tue Jan 10 2017 - 04:47:42 CST)
  • Ashar Malik (Tue Jan 10 2017 - 04:18:44 CST)
  • Ashar Malik (Tue Jan 10 2017 - 04:30:36 CST)
  • sunyeping (Tue Jan 10 2017 - 04:25:41 CST)
  • sunyeping (Tue Jan 10 2017 - 03:03:47 CST)
  • Norman Geist (Tue Jan 10 2017 - 02:43:17 CST)
• AW: wrapper for VMD to read compressed .xz files
  • Norman Geist (Mon Feb 03 2014 - 01:01:49 CST)
  • Norman Geist (Sat Feb 01 2014 - 15:06:26 CST)
• AW: Wrapping problem
  • Norman Geist (Mon May 30 2016 - 00:51:46 CDT)
• AW: Writing DCD from modified coordinates
  • Norman Geist (Fri Mar 21 2014 - 02:51:25 CDT)
• AW: writing velocities from VMD
  • Norman Geist (Mon Apr 07 2014 - 01:56:05 CDT)
  • Norman Geist (Fri Apr 04 2014 - 02:44:48 CDT)
• AW: z-direction selection
  • Norman Geist (Mon Jun 18 2018 - 02:38:44 CDT)
• AW: Zoom-to-fit before rendering
  • Norman Geist (Fri Mar 03 2017 - 02:24:46 CST)
  • Norman Geist (Thu Mar 02 2017 - 07:19:40 CST)
• AW: zooming into a chosen atom
  • Norman Geist (Thu Jun 16 2016 - 04:39:19 CDT)
  • Norman Geist (Thu Jun 16 2016 - 02:53:57 CDT)
• Away from email until Sunday...
  • John Stone (Wed Sep 15 2004 - 17:48:55 CDT)
• Away from VMD-L/email until July 8th...
  • daniel aguayo (Fri Jun 20 2008 - 16:27:34 CDT)
  • Alexandre A. Vakhrouchev (Thu Jun 19 2008 - 21:09:17 CDT)
  • John Stone (Thu Jun 19 2008 - 19:50:06 CDT)
• Away until July 12, self-help encouraged!
  • John Stone (Thu Jun 28 2007 - 17:22:36 CDT)
• AWS for VMD and NAMD no longer working?
  • John Stone (Thu Dec 09 2021 - 23:40:31 CST)
  • Chapman, John O. (Wed Nov 10 2021 - 16:25:23 CST)
• Axes
  • Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
  • John Stone (Tue Aug 19 2008 - 00:54:31 CDT)
  • Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
• Axes are not rotated?
  • Olaf Lenz (Thu Jul 22 2004 - 10:50:06 CDT)
  • John Stone (Mon Jul 19 2004 - 10:22:44 CDT)
  • Olaf Lenz (Mon Jul 19 2004 - 10:12:29 CDT)
• Axes dilema
  • John Stone (Fri Aug 11 2006 - 22:27:58 CDT)
  • griadi_at_utalca.cl (Fri Aug 11 2006 - 18:11:07 CDT)
• B factor calculation
  • Aaron.Oakley_at_csiro.au (Tue Nov 04 2008 - 16:27:02 CST)
  • AyÅŸe Özlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
• B-factor Plot
  • Paul Hubbard (Mon Feb 28 2000 - 17:06:33 CST)
• B-factor plugin
  • Wang Yi (Fri Aug 10 2012 - 12:53:48 CDT)
  • JC Gumbart (Fri Aug 10 2012 - 12:48:17 CDT)
  • flavio seixas (Fri Aug 10 2012 - 09:17:57 CDT)
  • Wang Yi (Fri Aug 10 2012 - 09:26:39 CDT)
  • Axel Kohlmeyer (Thu Aug 09 2012 - 15:50:47 CDT)
  • Wang Yi (Thu Aug 09 2012 - 15:00:42 CDT)
  • flavio seixas (Thu Aug 09 2012 - 14:13:26 CDT)
• Babel and VMD
  • Neil Henson T-12 (Tue Mar 03 1998 - 12:12:27 CST)
  • aldo jongejan (Tue Mar 03 1998 - 11:05:07 CST)
• Babel and Windows
  • Storr, Mark (Tue May 21 2002 - 08:22:37 CDT)
• babel compilation error
  • John Stone (Fri Dec 09 2005 - 12:59:39 CST)
  • Eugen Leitl (Fri Dec 09 2005 - 11:30:24 CST)
  • John Stone (Fri Dec 09 2005 - 10:10:20 CST)
  • Bogdan Costescu (Fri Dec 09 2005 - 10:04:22 CST)
  • John Stone (Thu Dec 08 2005 - 14:30:13 CST)
  • Cojocaru,Vlad (Thu Dec 08 2005 - 14:26:38 CST)
• backbone dihedral angles over trajectory
  • Giovanni Bellesia (Fri Aug 08 2008 - 17:36:44 CDT)
  • Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
• Backbone representation of RNA
  • John Stone (Fri Aug 12 2005 - 10:55:56 CDT)
  • Peter Schellenberg (Fri Aug 12 2005 - 01:40:44 CDT)
• backbone selection failing
  • Ashar Malik (Fri Apr 22 2016 - 04:32:13 CDT)
  • Stefan Doerr (Fri Apr 22 2016 - 04:34:16 CDT)
  • Stefan Doerr (Fri Apr 22 2016 - 04:05:10 CDT)
  • Samuel Bowerman (Thu Apr 21 2016 - 13:45:53 CDT)
  • Ashar Malik (Thu Apr 21 2016 - 13:28:42 CDT)
  • Stefan Doerr (Thu Apr 21 2016 - 11:27:19 CDT)
• background color
  • Fateme Sadat Emami (Mon Jan 27 2014 - 11:08:58 CST)
  • Maxim Belkin (Mon Jan 27 2014 - 11:41:11 CST)
  • John Stone (Mon Jan 27 2014 - 11:33:17 CST)
• Background colour
  • Jérôme Hénin (Sun Nov 30 2003 - 03:39:16 CST)
  • Derek Ng (Sat Nov 29 2003 - 23:38:26 CST)
• Background gradient in image
  • Axel Kohlmeyer (Mon Nov 15 2010 - 16:48:25 CST)
  • quantrum75 (Mon Nov 15 2010 - 15:45:43 CST)
• Backspace and delete
  • John Stone (Thu Mar 06 2003 - 18:46:50 CST)
• Backspace not functionning in console
  • John Stone (Thu Sep 11 2003 - 10:04:29 CDT)
  • John Stone (Wed Sep 10 2003 - 10:07:34 CDT)
  • Patrick Ladam (Wed Sep 10 2003 - 07:07:05 CDT)
• bad angels
  • genie lfs (Mon Apr 24 2006 - 05:06:32 CDT)
• bad angels]
  • Peter Freddolino (Mon Apr 24 2006 - 10:15:42 CDT)
• Bad Length and GLXBadLargeRequest errors
  • Axel Kohlmeyer (Thu Dec 23 2010 - 04:01:03 CST)
  • Corenflos, Steven (Wed Dec 22 2010 - 15:57:58 CST)
• Bad performance of VMD
  • John Stone (Fri Dec 02 2005 - 13:03:20 CST)
  • Jernej Zidar (Wed Nov 30 2005 - 04:41:24 CST)
  • John Stone (Mon Nov 28 2005 - 11:16:13 CST)
  • Jernej Zidar (Wed Nov 23 2005 - 09:40:53 CST)
• bad resolution and too slow on mandrake 10.0
  • matteo.pennestri_at_virgilio.it (Sun May 29 2005 - 12:37:42 CDT)
  • John Stone (Fri May 27 2005 - 15:00:06 CDT)
  • Jorge Hernandez Fernandez (Fri May 27 2005 - 14:50:09 CDT)
  • Olga Kravchenko (Wed May 25 2005 - 05:00:28 CDT)
  • Cetin Baloglu (Wed May 25 2005 - 04:04:55 CDT)
  • matteo.pennestri_at_virgilio.it (Wed May 25 2005 - 02:00:01 CDT)
• bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit)
  • John Stone (Wed Jan 20 2010 - 14:12:07 CST)
  • Dong Luo (Wed Jan 20 2010 - 14:01:45 CST)
  • Dong Luo (Wed Jan 20 2010 - 13:48:09 CST)
  • John Stone (Wed Jan 20 2010 - 12:37:38 CST)
  • John Stone (Wed Jan 20 2010 - 12:24:16 CST)
  • Axel Kohlmeyer (Wed Jan 20 2010 - 11:42:57 CST)
  • Dong Luo (Wed Jan 20 2010 - 11:12:11 CST)
  • Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
  • John Stone (Wed Jan 20 2010 - 10:24:45 CST)
  • Axel Kohlmeyer (Fri Jan 15 2010 - 12:11:21 CST)
  • John Stone (Fri Jan 15 2010 - 12:01:17 CST)
  • Dong Luo (Fri Jan 15 2010 - 11:30:48 CST)
• bad window parameter
  • Axel Kohlmeyer (Tue May 10 2011 - 10:39:44 CDT)
  • Robert Wohlhueter (Tue May 10 2011 - 09:27:34 CDT)
• bad window parameter -- SOLVED
  • Robert Wohlhueter (Tue May 10 2011 - 10:16:48 CDT)
• bad_alloc error
  • Gustavo Gust (Wed Nov 11 2009 - 10:17:37 CST)
  • Axel Kohlmeyer (Wed Nov 11 2009 - 10:43:34 CST)
  • John Stone (Wed Nov 11 2009 - 10:12:12 CST)
  • Gustavo Gust (Wed Nov 11 2009 - 09:58:01 CST)
  • John Stone (Wed Nov 11 2009 - 09:20:20 CST)
  • Gustavo Gust (Wed Nov 11 2009 - 09:04:34 CST)
• Bader Charge Analysis
  • Ozan Dernek (Fri Aug 21 2015 - 10:05:18 CDT)
  • Axel Kohlmeyer (Fri Aug 21 2015 - 12:05:44 CDT)
• badwater script - help
  • John Stone (Thu Jul 26 2007 - 16:28:08 CDT)
  • Jim Pfaendtner (Thu Jul 26 2007 - 15:18:48 CDT)
• basal spacing
  • Hasnain Shabbir (Wed Jun 19 2019 - 13:25:20 CDT)
• base plane not being filled in for terminal adenines in ribbons/new ribbons
  • John Stone (Tue Jun 15 2004 - 14:38:30 CDT)
  • Pattanayek, Sabuj (Mon Jun 14 2004 - 13:30:18 CDT)
• bash calling multiple python scripts that open vmd pauses
  • Ryan Woltz (Sat Jan 21 2023 - 21:47:48 CST)
  • Ryan Woltz (Sat Jan 21 2023 - 17:26:02 CST)
  • Ashar Malik (Sat Jan 21 2023 - 05:36:52 CST)
  • Ryan Woltz (Sat Jan 21 2023 - 04:30:13 CST)
• bash scripts quits after few frames
  • Jérôme Hénin (Tue Nov 22 2011 - 06:32:43 CST)
  • Axel Kohlmeyer (Tue Nov 22 2011 - 06:20:24 CST)
  • Jorgen Simonsen (Tue Nov 22 2011 - 03:55:02 CST)
• Basic membrane plugin questions
  • John Stone (Tue Apr 19 2005 - 18:42:53 CDT)
  • Meyer, Douglas K \(UMC-Student\) (Fri Apr 15 2005 - 11:20:56 CDT)
• basic procedure for ABF-PMF calculation
  • Jérôme Hénin (Mon Nov 29 2021 - 06:30:58 CST)
  • Yogesh Sharma (Fri Nov 26 2021 - 11:53:01 CST)
• Basic question about improper
  • Wenhao Liu (Tue Jun 18 2013 - 18:29:38 CDT)
• Basic VMD questions...
  • Justin Gullingsrud (Sun Oct 10 2004 - 10:19:17 CDT)
  • lug2002_at_med.cornell.edu (Sat Oct 09 2004 - 00:51:07 CDT)
  • Justin Gullingsrud (Thu Oct 07 2004 - 22:02:22 CDT)
  • Axel Kohlmeyer (Sun Oct 10 2004 - 03:20:16 CDT)
  • Oleg V. Stroganov (Sat Oct 09 2004 - 12:21:35 CDT)
  • Luis Rosales (Fri Oct 08 2004 - 21:05:30 CDT)
  • Axel Kohlmeyer (Fri Oct 08 2004 - 02:17:34 CDT)
  • Luis Rosales (Thu Oct 07 2004 - 19:10:52 CDT)
• Batch image creation
  • Axel Kohlmeyer (Fri Nov 04 2011 - 18:07:41 CDT)
  • Juan Antonio Raygoza Garay (Fri Nov 04 2011 - 16:59:57 CDT)
• Batch mode on Mac OS 10.5.3
  • Benjamin Hall (Wed Jun 04 2008 - 08:26:23 CDT)
  • Robert Brunner (Tue Jun 03 2008 - 12:34:02 CDT)
  • Dan Wright (Tue Jun 03 2008 - 11:24:22 CDT)
  • John Stone (Tue Jun 03 2008 - 11:10:18 CDT)
  • Benjamin Hall (Tue Jun 03 2008 - 05:16:52 CDT)
• batchmode use of "labels" functions?
  • John Stone (Fri Feb 10 2006 - 12:50:40 CST)
  • Brian Bennion (Fri Feb 10 2006 - 11:59:32 CST)
• BB Trace
  • Rex Palmer (Thu Aug 26 2010 - 14:49:39 CDT)
• Be someone whom you have never been before with DrMaxMan
  • ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
• Be the largest man around
  • petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
• Beginner with cyclic peptide
  • Peter Freddolino (Tue Apr 29 2008 - 11:44:04 CDT)
  • Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
• Beginner's problem
  • Alexandr Isayev (Tue Nov 14 2006 - 12:01:36 CST)
  • John Young (Tue Nov 14 2006 - 11:20:01 CST)
• behavior of "mol addfile first/last" with non-integer frame numbers
  • John Stone (Fri Sep 28 2007 - 13:37:49 CDT)
  • Axel Kohlmeyer (Thu Sep 27 2007 - 19:35:40 CDT)
• Behavior of TachyonLOptiXInternal Renderer
  • John Stone (Fri Apr 14 2017 - 05:03:15 CDT)
  • John Stone (Fri Apr 14 2017 - 02:29:36 CDT)
  • Vermaas, Joshua (Thu Apr 13 2017 - 20:53:52 CDT)
• best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule
  • Axel Kohlmeyer (Tue Jun 28 2011 - 09:55:40 CDT)
  • Sara Biocomputation (Mon Jun 27 2011 - 10:44:48 CDT)
  • Sara Biocomputation (Mon Jun 27 2011 - 10:39:30 CDT)
• Best fit plane axis
  • Jayendra Balasubramanian (Fri Dec 08 2006 - 14:52:31 CST)
  • Amarda Shehu (Fri Dec 08 2006 - 14:21:19 CST)
  • Myunggi Yi (Fri Dec 08 2006 - 12:23:58 CST)
• Best hardware for 3d.
  • John Stone (Fri Mar 15 2002 - 10:06:09 CST)
• best method for showing metal nanoparticle and protein in vmd
  • Axel Kohlmeyer (Sat Jun 08 2013 - 12:48:45 CDT)
  • hamid mosaddeghi (Fri Jun 07 2013 - 04:24:15 CDT)
• Best VMD install for El Capitan OS X?
  • John Stone (Fri Nov 06 2015 - 09:53:56 CST)
  • Eiros Zamora, Juan (Fri Nov 06 2015 - 09:32:57 CST)
  • John Stone (Mon Nov 02 2015 - 10:35:29 CST)
  • Eiros Zamora, Juan (Mon Nov 02 2015 - 03:35:36 CST)
• Best way for model post processing?
  • Axel Kohlmeyer (Mon Oct 18 2010 - 12:11:55 CDT)
  • Steve Jensen (Sun Oct 17 2010 - 23:22:14 CDT)
• Best way to bond peptides
  • Sujata Sovani (Wed Sep 01 2010 - 18:30:08 CDT)
• Best way to extend molfile plugin
  • Axel Kohlmeyer (Tue Jul 07 2020 - 08:15:37 CDT)
  • Peter Schmidtke (Tue Jul 07 2020 - 07:28:19 CDT)
• Best way to join two PDB fragments by a peptide bond
  • Sujata Sovani (Wed Sep 01 2010 - 17:36:46 CDT)
• beta barrel structure generation
  • Geist, Norman (Sat Dec 22 2018 - 02:06:44 CST)
  • Ashar Malik (Fri Dec 21 2018 - 21:45:16 CST)
  • Prabir Khatua (Fri Dec 21 2018 - 16:41:42 CST)
• Beta color of atoms
  • John Stone (Fri Nov 08 2002 - 11:38:47 CST)
  • #WONG CHEE HOW# (Thu Nov 07 2002 - 19:57:26 CST)
• beta column format in PDB
  • Axel Kohlmeyer (Wed Dec 24 2008 - 15:53:27 CST)
  • BIN ZHANG (Wed Dec 24 2008 - 14:57:47 CST)
  • Axel Kohlmeyer (Wed Dec 24 2008 - 14:33:53 CST)
  • BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
• beta column in a multiseq sequences alignment
  • Pablo Villalobos Navarro (Tue Aug 21 2012 - 18:21:07 CDT)
• Beta testers wanted for modified AutoPSF
  • Tristan Croll (Sun Feb 08 2015 - 01:57:33 CST)
• beta version
  • Sanjeev B.S. (Tue Nov 26 2002 - 01:35:28 CST)
• BFEE
  • Francesco Coppola (Wed Feb 08 2023 - 11:33:42 CST)
• BFEE calculations for protein-protein complexes
  • Deepshikha Ghosh 19310001 (Mon Dec 12 2022 - 04:23:41 CST)
• BFEE plugin error: 'measure center: bad weight sum would cause divide by zero'
  • Jovana Stelkic (Thu Apr 22 2021 - 13:34:48 CDT)
  • Axel Kohlmeyer (Thu Apr 22 2021 - 12:59:51 CDT)
  • Pawel Kedzierski (Thu Apr 22 2021 - 10:43:27 CDT)
  • Pawel Kedzierski (Thu Apr 22 2021 - 08:42:25 CDT)
  • Jovana Stelkic (Thu Apr 22 2021 - 01:25:22 CDT)
• Big DCD file
  • flavio seixas (Tue Sep 25 2012 - 07:37:40 CDT)
• Big DCD file help
  • flavio seixas (Tue Sep 25 2012 - 13:13:00 CDT)
  • flavio seixas (Tue Sep 25 2012 - 12:47:41 CDT)
  • Axel Kohlmeyer (Tue Sep 25 2012 - 12:54:09 CDT)
  • flavio seixas (Tue Sep 25 2012 - 11:56:05 CDT)
  • Bennion, Brian (Tue Sep 25 2012 - 11:43:52 CDT)
  • Axel Kohlmeyer (Tue Sep 25 2012 - 11:10:26 CDT)
  • flavio seixas (Tue Sep 25 2012 - 10:16:29 CDT)
• Big trr trajectory
  • John Stone (Thu Mar 23 2006 - 10:28:14 CST)
  • Anthony Cruz (Thu Mar 23 2006 - 13:27:17 CST)
• bigdcd
  • Ioana Cozmuta (Wed Nov 05 2003 - 18:29:25 CST)
  • Brian Bennion (Wed Nov 05 2003 - 17:52:38 CST)
  • Ioana Cozmuta (Wed Nov 05 2003 - 17:00:40 CST)
  • Ioana Cozmuta (Tue Nov 04 2003 - 19:52:51 CST)
• bigdcd + salt-bridge analysis
  • John Stone (Sun Sep 19 2010 - 19:39:16 CDT)
  • Murpholino Peligro (Thu Sep 16 2010 - 15:31:58 CDT)
• Bigdcd - get coordinates from file
  • Peter Freddolino (Sun Nov 05 2006 - 07:47:42 CST)
  • Per Jr. Greisen (Sun Nov 05 2006 - 05:56:34 CST)
• Bigdcd and Namdenergy batch problem
  • John Stone (Thu Feb 25 2010 - 16:46:08 CST)
  • Andrea Carotti (Wed Feb 24 2010 - 10:21:34 CST)
• bigdcd for distance problems
  • Francesco Pietra (Wed Jun 03 2015 - 16:04:13 CDT)
  • Josh Vermaas (Wed Jun 03 2015 - 14:03:58 CDT)
  • Francesco Pietra (Wed Jun 03 2015 - 12:08:44 CDT)
• bigdcd v2.0 testers needed...
  • Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
• bigdcd v3 available. testers needed.
  • Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
• bilayer thickness in simulation of POPC membranes
  • Olaf Lenz (Sun Aug 12 2007 - 04:00:41 CDT)
  • Cojocaru,Vlad (Sun Aug 12 2007 - 02:54:44 CDT)
  • Axel Kohlmeyer (Sat Aug 11 2007 - 11:33:51 CDT)
  • Cojocaru,Vlad (Sat Aug 11 2007 - 10:08:28 CDT)
  • Vlad Cojocaru (Fri Aug 10 2007 - 10:56:41 CDT)
• BIMac2019
  • Dusan Racko (Thu Feb 28 2019 - 08:39:19 CST)
• Binary request
  • Axel Kohlmeyer (Fri Jan 07 2011 - 08:15:18 CST)
  • Axel Kohlmeyer (Fri Jan 07 2011 - 09:01:48 CST)
  • Nima Nouri (Fri Jan 07 2011 - 04:19:13 CST)
• Binary VMD buid for Linux, text mode only
  • John Stone (Wed Mar 03 2010 - 17:09:42 CST)
  • Benjamin Bouvier (Wed Mar 03 2010 - 09:26:20 CST)
• Binding affinity simulation of a mutation structure.
  • João Ribeiro KS (Sun Feb 12 2017 - 23:32:52 CST)
  • jrhau lung (Sun Feb 12 2017 - 19:14:28 CST)
• Binding free energy calculations
  • varun dewaker (Sat Mar 24 2018 - 08:12:17 CDT)
• Binding site similarity
  • Ban Arn (Mon Dec 05 2011 - 09:51:55 CST)
• binning data for each frame and coordinate
  • Axel Kohlmeyer (Wed Oct 12 2005 - 13:34:37 CDT)
  • syma (Wed Oct 12 2005 - 04:35:45 CDT)
• Bio-Image summer school in Paris this year
  • Marc Baaden (Wed Mar 16 2005 - 05:45:47 CST)
• BioCoRE Release: New Features
  • Robert Brunner (Mon Dec 16 2002 - 17:04:02 CST)
• Biometric Case Study Presentations Available (no charge), data mining and predictive modeling
  • Lisa Solomon (Mon Jul 10 2006 - 12:22:37 CDT)
• Biomolecular Simulations Meeting Bordeaux, 2&3 Sept. 2005
  • Biomolecular Simulations Congress 2005 (Tue Mar 22 2005 - 08:19:24 CST)
• Black & white VMD in CAVE?
  • John Stone (Thu Mar 18 2004 - 11:02:10 CST)
  • Jeroen Akershoek (Thu Mar 18 2004 - 00:28:34 CST)
• Black screen OPTIX interactive rendering
  • John Stone (Wed Jun 10 2020 - 09:57:06 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 08:20:49 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 05:22:39 CDT)
• blank output
  • John Stone (Mon Nov 07 2011 - 12:43:57 CST)
  • sarah k (Sun Nov 06 2011 - 09:34:39 CST)
• Blank thumbnails and non-working snapshots
  • Christopher McLean (Thu Feb 11 2010 - 03:18:29 CST)
  • John Stone (Tue Feb 09 2010 - 10:07:31 CST)
  • John Stone (Tue Feb 09 2010 - 09:44:00 CST)
  • John Stone (Tue Feb 09 2010 - 09:29:32 CST)
  • Christopher McLean (Tue Feb 09 2010 - 09:04:06 CST)
  • Axel Kohlmeyer (Tue Feb 09 2010 - 08:24:14 CST)
  • John Stone (Tue Feb 09 2010 - 08:12:37 CST)
  • Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
  • Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
  • Christopher McLean (Mon Feb 08 2010 - 09:55:13 CST)
• BMP snapshot
  • John Stone (Thu May 07 2009 - 14:24:57 CDT)
  • Eric H. Lee (Thu May 07 2009 - 14:26:24 CDT)
  • Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
• BN nanostructure builder
  • Upamanyu Ray (Thu Nov 14 2013 - 15:54:42 CST)
• Body
  • Axel Kohlmeyer (Mon Mar 06 2017 - 12:10:52 CST)
  • elene shopova (Mon Mar 06 2017 - 11:18:40 CST)
• Bond angle distribution
  • Wang Yi (Tue Jun 19 2012 - 15:13:48 CDT)
  • Prof. Eddie (Tue Jun 19 2012 - 13:49:33 CDT)
• Bond between two hydrogen atoms
  • Axel Kohlmeyer (Tue Jun 28 2011 - 12:56:11 CDT)
  • Debasis Sengupta (Tue Jun 28 2011 - 12:23:05 CDT)
• Bond Colors
  • Axel Kohlmeyer (Thu Oct 14 2010 - 11:58:09 CDT)
  • John Stone (Thu Oct 14 2010 - 11:54:04 CDT)
  • Brooke Dallas (Thu Oct 14 2010 - 11:37:10 CDT)
  • Patrick Burney (Wed Oct 13 2010 - 14:41:43 CDT)
  • Axel Kohlmeyer (Wed Oct 13 2010 - 12:38:18 CDT)
  • Eduard Schreiner (Wed Oct 13 2010 - 12:14:46 CDT)
  • Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
  • Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
  • Brooke Dallas (Wed Oct 13 2010 - 08:46:36 CDT)
• bond connectivity for different frames
  • John Stone (Tue Mar 11 2003 - 10:26:52 CST)
  • Lars Bruno Hansen (Tue Mar 11 2003 - 10:16:38 CST)
• bond connectivity not displayed in VMD
  • Axel Kohlmeyer (Wed Oct 21 2009 - 12:58:15 CDT)
  • Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
• BOND CP2 - CT2 IN PARAMETER FILES
  • bora erdemli (Thu Oct 28 2004 - 16:42:09 CDT)
• bond cutoff
  • John Stone (Wed Mar 21 2012 - 11:29:49 CDT)
  • Zhuyi Xue (Mon Mar 19 2012 - 08:45:34 CDT)
• Bond display and Periodic Boxes
  • John Stone (Mon Apr 26 2004 - 17:51:03 CDT)
  • Jim Shepherd (Mon Apr 26 2004 - 14:19:02 CDT)
• BOND distance
  • Aashish Bhatt (Sun Mar 31 2019 - 04:55:13 CDT)
  • Karteek Kumar (Sat Mar 30 2019 - 22:14:27 CDT)
  • Ernesto Aleksei Delgado Hurtado (Sat Mar 30 2019 - 21:46:36 CDT)
  • Giacomo Fiorin (Sat Mar 30 2019 - 18:13:26 CDT)
  • Aashish Bhatt (Sat Mar 30 2019 - 06:23:35 CDT)
• bond distance across different proteins
  • Stern, Julie (Tue Dec 07 2004 - 14:56:59 CST)
• Bond drawing questino
  • John Stone (Fri Oct 24 2003 - 18:51:59 CDT)
  • Paul Fons (Tue Oct 21 2003 - 01:52:22 CDT)
• Bond error
  • Axel Kohlmeyer (Sun Aug 04 2013 - 23:20:35 CDT)
  • Benjamin Cowen (Sun Aug 04 2013 - 18:07:39 CDT)
  • Axel Kohlmeyer (Sun Aug 04 2013 - 03:21:21 CDT)
  • Benjamin Cowen (Sat Aug 03 2013 - 16:07:17 CDT)
  • Axel Kohlmeyer (Sat Aug 03 2013 - 15:03:40 CDT)
  • Benjamin Cowen (Fri Aug 02 2013 - 15:25:37 CDT)
• Bond in pbc condition
  • John Stone (Fri Aug 28 2009 - 10:22:06 CDT)
  • Olaf Lenz (Fri Aug 28 2009 - 04:06:39 CDT)
  • Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
• Bond information
  • Justin Gullingsrud (Fri Aug 04 2000 - 12:11:21 CDT)
  • Timm Essigke (Fri Aug 04 2000 - 11:09:44 CDT)
• bond information in psf file
  • Axel Kohlmeyer (Sat Jun 24 2006 - 22:51:13 CDT)
  • Xu (Sat Jun 24 2006 - 20:51:27 CDT)
• bond Label position
  • Parvez Mh (Mon Jun 06 2016 - 12:21:00 CDT)
• Bond Labels - Issue with Rendering
  • Peter Murphy (Mon Jun 03 2013 - 12:12:04 CDT)
• bond length
  • Justin Gullingsrud (Mon Jan 28 2002 - 11:32:36 CST)
  • Vlad Cojocaru (Mon Jan 28 2002 - 05:26:27 CST)
• Bond Length and Bond Angle as a Function of Steps
  • ehsan shahini (Tue Jul 30 2019 - 02:29:41 CDT)
• bond length definition
  • John Stone (Wed Apr 25 2001 - 13:39:35 CDT)
  • Aitor Gonzalez (Wed Apr 25 2001 - 04:41:32 CDT)
  • Mauricio Carrillo Tripp (Tue Apr 24 2001 - 13:40:17 CDT)
• Bond Lengths
  • John Stone (Fri Jun 20 2003 - 09:55:54 CDT)
  • Timothy W Suen (Fri Jun 20 2003 - 08:54:25 CDT)
• Bond lengths from PDB and PSF
  • Axel Kohlmeyer (Mon May 12 2008 - 17:32:55 CDT)
  • Andrew Huang (Mon May 12 2008 - 16:36:18 CDT)
• bond missimg
  • Eduard Schreiner (Mon Apr 25 2005 - 08:58:44 CDT)
  • Axel Kohlmeyer (Mon Apr 25 2005 - 08:47:20 CDT)
  • haider abbas (Mon Apr 25 2005 - 05:25:19 CDT)
• Bond Optimization FFTK error
  • Mayne, Christopher G (Fri Feb 26 2016 - 11:58:10 CST)
  • Soumya Lipsa Rath (Thu Feb 18 2016 - 18:18:04 CST)
• Bond order cut-off value
  • Sanjib Chowdhury (Fri Jan 17 2014 - 13:01:42 CST)
  • Axel Kohlmeyer (Fri Jan 17 2014 - 11:59:07 CST)
  • Sanjib Chowdhury (Fri Jan 17 2014 - 11:16:41 CST)
  • John Stone (Fri Jan 17 2014 - 11:06:26 CST)
  • Axel Kohlmeyer (Thu Jan 16 2014 - 19:35:23 CST)
  • Sanjib Chowdhury (Thu Jan 16 2014 - 16:53:54 CST)
  • John Stone (Thu Jan 16 2014 - 17:01:41 CST)
• Bond representation of coarse grained molecules
  • Sunjoo Lee (Wed Oct 07 2009 - 12:17:12 CDT)
  • Axel Kohlmeyer (Wed Oct 07 2009 - 09:39:42 CDT)
  • Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
  • Axel Kohlmeyer (Sat Sep 05 2009 - 14:45:59 CDT)
  • John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
  • BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
• bond updating in VMD
  • Albert (Sat Aug 19 2017 - 04:11:22 CDT)
  • stefdoerr_at_gmail.com (Sat Aug 19 2017 - 04:41:54 CDT)
  • Jana, Suvamay (Sat Aug 19 2017 - 04:00:40 CDT)
  • Ashar Malik (Sat Aug 19 2017 - 01:27:26 CDT)
  • Albert (Sat Aug 19 2017 - 00:20:27 CDT)
• Bond/angle optimization using FFTK
  • Minh Ho (Thu Oct 08 2020 - 16:39:46 CDT)
• bonding across periodic boundary
  • Jim Phillips (Tue Apr 12 2005 - 13:02:10 CDT)
  • Glenn Johnson (Tue Apr 12 2005 - 12:14:53 CDT)
• bonding across periodic walls
  • Kevin Wittkowski (Fri Jun 14 2024 - 02:43:55 CDT)
  • Giacomo Fiorin (Thu Jun 13 2024 - 16:37:32 CDT)
  • Kevin Wittkowski (Thu Jun 13 2024 - 14:34:08 CDT)
• Bonding energies between two atom selections
  • Ashar Malik (Tue Feb 17 2015 - 05:56:18 CST)
  • Viswanath Pasumarthi (Tue Feb 17 2015 - 05:12:56 CST)
• Bondlength information!
  • John Stone (Wed Aug 06 2003 - 11:04:57 CDT)
  • Ramesh K. Sistla (Wed Aug 06 2003 - 02:54:34 CDT)
• Bondlist limit
  • Axel Kohlmeyer (Wed Jun 15 2016 - 14:39:52 CDT)
  • Ivan Moncayo (Wed Jun 15 2016 - 12:05:16 CDT)
  • Axel Kohlmeyer (Thu May 19 2016 - 12:35:29 CDT)
  • Ivan Moncayo (Thu May 19 2016 - 11:44:24 CDT)
• bonds across periodic boundaries
  • John Stone (Tue Oct 16 2007 - 09:22:46 CDT)
  • Barry Bickmore (Tue Oct 16 2007 - 08:53:09 CDT)
• Bonds appearing as elongated lines
  • Josh Vermaas (Thu Sep 17 2015 - 09:32:23 CDT)
  • conor parks (Wed Sep 16 2015 - 11:59:14 CDT)
  • Sourav Ray (Wed Sep 16 2015 - 04:34:43 CDT)
• bonds forming during simulation
  • John Stone (Mon Jun 26 2006 - 14:48:11 CDT)
  • Sandeep Prakash (Mon Jun 26 2006 - 12:59:50 CDT)
• bonds in .psf file
  • Axel Kohlmeyer (Thu May 21 2009 - 12:48:40 CDT)
  • KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
• bonds in graphical representation
  • John Stone (Tue Jul 23 2002 - 22:10:19 CDT)
  • Marcela Madrid (Sat Jul 20 2002 - 15:20:08 CDT)
• bonds not created as desired
  • Akemi Matsuno-Yagi (Tue Jun 09 2009 - 15:09:25 CDT)
  • John Stone (Tue Jun 09 2009 - 14:55:44 CDT)
  • Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
• bondsrecalc question
  • Axel Kohlmeyer (Fri Mar 30 2012 - 12:46:52 CDT)
  • Denis Davydov (Fri Mar 30 2012 - 11:10:14 CDT)
• Boolean operators and the new atomsel type
  • Axel Kohlmeyer (Wed Feb 10 2010 - 14:35:37 CST)
  • Daniel Terry (Wed Feb 10 2010 - 12:30:21 CST)
• boolean operators in graphics
  • John Stone (Thu Mar 14 2002 - 22:39:09 CST)
  • Andrew Dalke (Thu Mar 14 2002 - 22:32:38 CST)
  • Sanjeev B.S. (Thu Mar 14 2002 - 22:11:11 CST)
• Boron nitride preparation
  • Axel Kohlmeyer (Sat Jun 21 2014 - 09:26:48 CDT)
  • khannan krishna (Sat Jun 21 2014 - 08:50:17 CDT)
  • khannan krishna (Sat Jun 21 2014 - 04:28:29 CDT)
  • Axel Kohlmeyer (Sat Jun 21 2014 - 03:31:23 CDT)
  • khannan krishna (Sat Jun 21 2014 - 01:08:27 CDT)
• boubt about consistency of measures
  • John Stone (Mon Mar 27 2006 - 21:37:55 CST)
  • John Stone (Mon Mar 27 2006 - 00:47:16 CST)
  • Sergio Anis (Thu Mar 23 2006 - 08:19:52 CST)
• Bounced VMD-L postings...
  • Maxim Belkin (Tue Feb 18 2014 - 13:26:22 CST)
  • John Stone (Tue Feb 18 2014 - 13:17:04 CST)
• Boundry Dimensions for Solvation
  • Axel Kohlmeyer (Thu Jul 26 2007 - 11:41:04 CDT)
  • Vijaya Brahma (Thu Jul 26 2007 - 04:25:03 CDT)
  • Vijaya Brahma (Wed Jul 25 2007 - 23:56:13 CDT)
• Box boundaries displaying
  • Ramin Ekhteiari (Tue Jul 02 2013 - 02:14:36 CDT)
  • Olaf Lenz (Mon Jul 01 2013 - 12:46:00 CDT)
  • Axel Kohlmeyer (Mon Jul 01 2013 - 11:08:23 CDT)
  • Michele Formica (Mon Jul 01 2013 - 10:40:03 CDT)
  • Michele Formica (Mon Jul 01 2013 - 10:36:57 CDT)
  • Michele Formica (Mon Jul 01 2013 - 10:21:54 CDT)
• Box dimensions
  • John Stone (Wed Jun 20 2007 - 10:55:34 CDT)
  • Jennie Thomas (Tue Jun 19 2007 - 18:28:12 CDT)
  • John Stone (Tue Jun 19 2007 - 18:03:34 CDT)
  • Jennie Thomas (Tue Jun 19 2007 - 17:59:53 CDT)
• box information
  • John Stone (Tue Apr 04 2006 - 17:27:17 CDT)
  • dimka (Tue Apr 04 2006 - 17:18:30 CDT)
• box information amber crdbox
  • Myunggi Yi (Fri Jan 05 2007 - 10:44:42 CST)
  • John Stone (Wed Jan 03 2007 - 10:23:46 CST)
  • Myunggi Yi (Fri Dec 22 2006 - 17:24:19 CST)
• Box of non-polar solvent
  • Brian Bennion (Fri Jul 16 2004 - 13:35:28 CDT)
  • Brian Bennion (Fri Jul 16 2004 - 13:13:01 CDT)
  • Axel Kohlmeyer (Fri Jul 16 2004 - 11:59:45 CDT)
  • John Stone (Fri Jul 16 2004 - 10:36:28 CDT)
  • Raymond C. Fort Jr. (Fri Jul 16 2004 - 09:17:23 CDT)
• box vectores in .trr
  • Matt Watkins (Sat Apr 09 2011 - 17:47:06 CDT)
  • Axel Kohlmeyer (Sat Apr 09 2011 - 15:17:23 CDT)
  • leila karami (Sat Apr 09 2011 - 08:44:04 CDT)
• BPS Meeting @ Baltimore
  • L. Michel Espinoza-Fonseca (Thu Mar 08 2007 - 09:40:16 CST)
  • Peter Freddolino (Thu Mar 08 2007 - 07:07:25 CST)
  • bora erdemli (Mon Mar 05 2007 - 19:16:40 CST)
• breaking a big dcd file
  • John Stone (Wed Jan 11 2006 - 16:23:26 CST)
  • Kim Gunnerson (Wed Jan 11 2006 - 13:41:49 CST)
  • Axel Kohlmeyer (Tue Dec 20 2005 - 18:58:28 CST)
  • Nitin Bhardwaj (Tue Dec 20 2005 - 16:48:08 CST)
  • John Stone (Tue Dec 20 2005 - 16:28:31 CST)
  • Nitin Bhardwaj (Tue Dec 20 2005 - 16:09:40 CST)
• Breaking a trajectory into separate files with tcl
  • Patrick Redmill (Mon Oct 05 2009 - 05:41:39 CDT)
  • Axel Kohlmeyer (Mon Oct 05 2009 - 01:41:49 CDT)
  • Schreiner Eduard (Sun Oct 04 2009 - 22:06:21 CDT)
  • Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
• Breaking Bonds in VMD
  • John Stone (Mon Jan 26 2009 - 15:55:29 CST)
  • Axel Kohlmeyer (Tue Jan 20 2009 - 17:21:16 CST)
  • John Stone (Tue Jan 20 2009 - 17:26:01 CST)
  • nicholas lee (Tue Jan 20 2009 - 15:01:16 CST)
  • nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
  • John Stone (Tue Jan 20 2009 - 10:47:17 CST)
• breaking the DCD file
  • Peter Freddolino (Sun Apr 16 2006 - 17:23:42 CDT)
  • John Stone (Sun Apr 16 2006 - 17:12:32 CDT)
  • Rima Chaudhuri (Sun Apr 16 2006 - 16:01:52 CDT)
• breaking the last bond when loading
  • John Stone (Tue Nov 26 2002 - 11:06:20 CST)
  • John Stone (Tue Nov 26 2002 - 09:34:35 CST)
  • Vlad Cojocaru (Tue Nov 26 2002 - 07:24:59 CST)
• bridging_waters.tcl error and usage
  • Justin Gullingsrud (Mon Nov 08 2004 - 13:04:00 CST)
  • Justin Gullingsrud (Mon Nov 08 2004 - 12:51:05 CST)
  • pl (Mon Nov 08 2004 - 05:18:21 CST)
• bring z-axis along a new vector
  • Ajasja LjubetiÄ� (Wed Feb 16 2011 - 03:00:01 CST)
  • dhacademic (Tue Feb 15 2011 - 14:39:04 CST)
• Broken bonds in trajectory due to pbc
  • Jennifer Williams (Wed Dec 09 2009 - 06:39:48 CST)
  • Olaf Lenz (Wed Dec 09 2009 - 04:14:34 CST)
  • Olaf Lenz (Wed Dec 09 2009 - 04:04:29 CST)
  • Axel Kohlmeyer (Tue Dec 08 2009 - 16:32:01 CST)
  • Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
  • Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
  • Jennifer Williams (Tue Dec 08 2009 - 05:41:07 CST)
• Broken link to MacKerell parameterization tutorial
  • Jim Parker (Fri Mar 21 2014 - 06:28:03 CDT)
  • JC Gumbart (Thu Mar 20 2014 - 20:12:22 CDT)
  • John Stone (Thu Mar 20 2014 - 15:22:11 CDT)
  • Jim Parker (Thu Mar 20 2014 - 14:26:40 CDT)
• Broken tube drawing method?
  • Axel Kohlmeyer (Thu Jul 05 2007 - 09:24:39 CDT)
  • Claw Isthelaw (Thu Jul 05 2007 - 00:17:37 CDT)
• Buffer Overflow in "label add" in VMD
  • Christopher MacDermaid (Wed Sep 18 2013 - 10:19:26 CDT)
• Bug fixed in volmap
  • Giacomo Fiorin (Thu Jan 24 2019 - 21:30:23 CST)
• Bug in 'source' command or in for loop?
  • John Stone (Fri Sep 16 2011 - 14:03:38 CDT)
  • dwds gerge (Tue Sep 13 2011 - 19:37:08 CDT)
  • John Stone (Tue Sep 13 2011 - 13:52:43 CDT)
  • dwds gerge (Tue Sep 13 2011 - 12:06:10 CDT)
• Bug in AutoIMD
  • John Stone (Thu Dec 09 2010 - 16:42:53 CST)
  • Tristan Croll (Sun Dec 05 2010 - 21:44:48 CST)
  • Tristan Croll (Sun Dec 05 2010 - 19:42:50 CST)
• bug in comments interpretation of vmd
  • John Stone (Wed Nov 26 2008 - 11:13:49 CST)
• bug in Hbond Option
  • Axel Kohlmeyer (Mon Sep 19 2011 - 06:51:38 CDT)
  • hamid mosaddeghi (Mon Sep 19 2011 - 00:37:41 CDT)
• bug in membrane plugin
  • JC Gumbart (Wed May 17 2006 - 14:21:55 CDT)
  • Peter Freddolino (Wed May 17 2006 - 14:14:56 CDT)
  • John Stone (Wed May 17 2006 - 13:59:01 CDT)
  • Ting Wang (Wed May 17 2006 - 13:52:21 CDT)
  • Axel Kohlmeyer (Mon May 15 2006 - 13:44:00 CDT)
  • John Stone (Mon May 15 2006 - 12:33:29 CDT)
  • Ting Wang (Thu May 11 2006 - 13:47:11 CDT)
• Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64)
  • Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
• bug in the g(r) evaluation?
  • cipitaua_at_gmail.com (Wed Apr 23 2008 - 07:50:12 CDT)
  • Axel Kohlmeyer (Tue Apr 22 2008 - 14:32:07 CDT)
  • cipitaua_at_gmail.com (Tue Apr 22 2008 - 11:06:14 CDT)
  • Axel Kohlmeyer (Tue Apr 22 2008 - 10:10:35 CDT)
  • cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
• Bug in the tcl script
  • John Stone (Thu Feb 15 2007 - 22:44:32 CST)
  • greddy1_at_umd.edu (Tue Feb 13 2007 - 13:18:58 CST)
  • greddy1_at_umd.edu (Fri Feb 09 2007 - 19:51:24 CST)
• Bug in VMD 1.9.3?
  • Arham Amouie (Wed Apr 26 2017 - 11:17:55 CDT)
  • Arham Amouie (Wed Apr 26 2017 - 10:37:58 CDT)
  • John Stone (Wed Apr 26 2017 - 10:52:03 CDT)
  • John Stone (Wed Apr 26 2017 - 10:03:28 CDT)
  • Arham Amouie (Wed Apr 26 2017 - 07:07:20 CDT)
• BUG in VMD dx reader plugin
  • Axel Kohlmeyer (Thu Aug 01 2013 - 05:05:03 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 05:18:59 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 05:06:09 CDT)
  • Norman Geist (Thu Aug 01 2013 - 03:43:07 CDT)
• Bug in VMD main?
  • Ahmet Bakan (Sat Mar 03 2012 - 12:25:05 CST)
  • John Stone (Sat Mar 03 2012 - 12:37:43 CST)
• Bug in VMD-1.6 (linux, GL)
  • John Stone (Fri Mar 09 2001 - 00:25:26 CST)
  • Timm Essigke (Mon Mar 05 2001 - 16:21:53 CST)
• Bug in VMD-1.8.7 multiseq functionality
  • genie lfs (Wed Jun 02 2010 - 04:54:48 CDT)
• Bug in VMD?
  • John Stone (Thu Mar 03 2011 - 13:38:58 CST)
  • Sujata Sovani (Thu Mar 03 2011 - 12:15:16 CST)
• bug in xsfplugin [patch included]
  • John Stone (Thu Apr 11 2013 - 12:08:32 CDT)
  • Axel Kohlmeyer (Thu Apr 11 2013 - 11:59:11 CDT)
  • Roberto Guerra (Thu Apr 11 2013 - 11:50:36 CDT)
  • Axel Kohlmeyer (Thu Apr 11 2013 - 08:18:59 CDT)
  • John Stone (Wed Apr 03 2013 - 15:56:28 CDT)
  • Roberto Guerra (Sat Mar 30 2013 - 19:55:43 CDT)
• bug of VMD
  • John Stone (Thu Jul 12 2012 - 10:37:18 CDT)
  • Albert (Fri Jun 29 2012 - 03:40:15 CDT)
• BUG Report -> Draw multiple frames
  • John Stone (Fri Nov 08 2013 - 16:58:23 CST)
  • Tristan Croll (Sun Oct 13 2013 - 18:53:22 CDT)
  • John Stone (Fri Oct 11 2013 - 08:34:49 CDT)
  • Norman Geist (Fri Oct 11 2013 - 02:41:25 CDT)
• Bug report for NAMDgui plugin in VMD (1.9.4 alpha 8)
  • John Stone (Wed Oct 11 2017 - 09:57:26 CDT)
  • Pawel Kedzierski (Wed Oct 11 2017 - 08:07:35 CDT)
  • Pawel Kedzierski (Wed Oct 11 2017 - 04:10:20 CDT)
• bug report in VMD 1.8.5
  • Leonardo Trabuco (Wed Feb 28 2007 - 14:15:11 CST)
  • Nichols A. Romero (Wed Feb 28 2007 - 14:10:47 CST)
  • John Stone (Tue Feb 27 2007 - 12:48:46 CST)
  • Jerome Henin (Mon Feb 26 2007 - 19:32:29 CST)
  • Axel Kohlmeyer (Mon Feb 26 2007 - 17:26:38 CST)
  • Nichols A. Romero (Mon Feb 26 2007 - 17:03:54 CST)
  • John Stone (Mon Feb 26 2007 - 16:41:14 CST)
  • Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
  • Nichols A. Romero (Mon Feb 26 2007 - 16:24:53 CST)
• BUG REPORT: Malfunctioning of VMD with Yosemite/ Follow up
  • Tianhua Feng (Fri Jul 17 2015 - 16:45:38 CDT)
  • Yasaman Ghadarghadr (Thu Jul 16 2015 - 13:08:30 CDT)
  • John Stone (Thu Jul 16 2015 - 09:57:33 CDT)
  • Yasaman Ghadarghadr (Wed Jul 15 2015 - 14:14:31 CDT)
• BUG REPORT: Malfunctioning of VMD with Yosemite?
  • John Stone (Fri Sep 05 2014 - 10:05:28 CDT)
  • Davide Mercadante (Thu Sep 04 2014 - 17:32:21 CDT)
  • John Stone (Thu Sep 04 2014 - 09:53:43 CDT)
  • Axel Kohlmeyer (Thu Sep 04 2014 - 07:45:04 CDT)
  • Davide Mercadante (Thu Sep 04 2014 - 07:08:57 CDT)
• bug when starting VMD on MACOS ARM
  • Maud Jusot (Thu Feb 22 2024 - 11:12:16 CST)
  • Isralewitz, Barry (Thu Feb 22 2024 - 09:45:04 CST)
  • Maud Jusot (Thu Feb 22 2024 - 04:50:26 CST)
  • Maud Jusot (Thu Feb 22 2024 - 04:32:55 CST)
  • Isralewitz, Barry (Wed Feb 21 2024 - 12:06:57 CST)
  • Maud Jusot (Wed Feb 21 2024 - 08:24:02 CST)
• Bug with FEP?
  • Brian Radak (Tue Apr 17 2018 - 09:42:46 CDT)
  • Francesco Pietra (Tue Apr 17 2018 - 00:05:38 CDT)
  • Brian Radak (Mon Apr 16 2018 - 11:31:45 CDT)
  • Francesco Pietra (Sun Apr 15 2018 - 02:48:10 CDT)
• BUG with MODEL card in PDB file
  • John Stone (Mon Sep 20 2004 - 16:02:12 CDT)
  • John Stone (Mon Sep 20 2004 - 15:39:29 CDT)
  • Nicholson, James D Mr ARO (Mon Sep 20 2004 - 15:34:41 CDT)
• BUG(s): vmd-1.9.2b
  • John Stone (Thu Oct 30 2014 - 08:50:21 CDT)
  • Norman Geist (Wed Oct 29 2014 - 04:10:16 CDT)
• BUG: vmd-1.9.2 final Representations GUI
  • Norman Geist (Wed Feb 11 2015 - 01:38:08 CST)
  • Norman Geist (Tue Feb 10 2015 - 10:30:48 CST)
  • John Stone (Tue Feb 10 2015 - 10:10:03 CST)
  • Norman Geist (Tue Feb 10 2015 - 05:01:19 CST)
  • John Stone (Mon Feb 09 2015 - 15:37:55 CST)
  • Norman Geist (Mon Feb 02 2015 - 05:30:42 CST)
  • Maxim Belkin (Mon Feb 02 2015 - 05:39:53 CST)
  • Norman Geist (Mon Feb 02 2015 - 03:52:52 CST)
• bug?
  • Ioana Cozmuta (Fri Jan 17 2003 - 22:08:41 CST)
• BUG? Hbond rep brakes RowInterleaved Stereo VMD 1.9.2a35
  • John Stone (Mon May 19 2014 - 11:28:07 CDT)
  • John Stone (Fri May 16 2014 - 14:31:17 CDT)
  • John Stone (Wed Apr 09 2014 - 14:15:43 CDT)
  • Norman Geist (Thu Apr 03 2014 - 02:17:38 CDT)
• Bugfix: new save_state.tcl for VMD 1.8 installations...
  • John Stone (Fri Jan 31 2003 - 14:02:44 CST)
• Bugs ? Representation window does not update new material
  • John Stone (Fri Oct 23 2009 - 11:06:20 CDT)
  • TRINH Minh Hieu (Fri Oct 23 2009 - 10:52:39 CDT)
  • John Stone (Fri Oct 23 2009 - 09:56:47 CDT)
  • TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
• Bugs and Questions
  • Joao Ribeiro (Thu Apr 25 2019 - 14:14:17 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 14:10:36 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 14:15:36 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 14:25:02 CDT)
  • Joao Ribeiro (Thu Apr 25 2019 - 14:22:44 CDT)
  • Joao Ribeiro (Thu Apr 25 2019 - 13:39:32 CDT)
  • McGuire, Kelly (Thu Apr 25 2019 - 10:14:02 CDT)
• Bugs in solvate plugin
  • Peter Freddolino (Fri Jan 08 2016 - 13:57:47 CST)
  • Vlastimil Zíma (Wed Jan 06 2016 - 03:27:41 CST)
• Build a customized alpha helix using Molefacture by command
  • Thomas C. Bishop (Tue Jan 13 2015 - 10:36:11 CST)
  • Jian Dai (Tue Jan 13 2015 - 08:23:01 CST)
• Build a VMD forum?
  • Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
  • Stanley, Yemin Shi (Wed Mar 19 2008 - 15:49:08 CDT)
• build dependency
  • Axel Kohlmeyer (Fri Apr 09 2010 - 04:37:59 CDT)
  • Ajasja LjubetiÄ� (Fri Apr 09 2010 - 03:43:19 CDT)
  • Knut Jørgen Bjuland (Fri Apr 09 2010 - 02:28:48 CDT)
• Build graphene sheets using VMD
  • Axel Kohlmeyer (Thu Feb 20 2020 - 16:22:12 CST)
  • Amir Afshar (Thu Feb 20 2020 - 16:12:17 CST)
  • Amir Afshar (Thu Feb 20 2020 - 15:47:46 CST)
  • Axel Kohlmeyer (Thu Feb 20 2020 - 15:54:39 CST)
• build unit cells and supercells for VASP
  • §õ¤å¤Z (Wed Apr 17 2013 - 10:03:30 CDT)
• build virus envelope
  • sunyeping (Thu Apr 12 2018 - 23:34:06 CDT)
• Building a beta barrel using a beta hairpin
  • Diego Granados (Thu Jul 12 2012 - 17:27:43 CDT)
• Building a membrane
  • Sebastián Gutiérrez (Wed Jul 04 2012 - 17:40:32 CDT)
  • Vince Cho (Tue Jul 03 2012 - 12:44:39 CDT)
  • Sebastián Gutiérrez (Tue Jul 03 2012 - 11:31:41 CDT)
  • Vince Cho (Wed Jun 27 2012 - 23:03:54 CDT)
• Building a membrane from a individual surfactant molecule
  • surendra jain (Mon Nov 08 2010 - 06:27:02 CST)
• building a solvent/gas filled simulation box, no protein inside
  • Maxim Belkin (Fri Feb 05 2016 - 14:20:04 CST)
  • Olya Kravchenko (Thu Feb 04 2016 - 20:53:17 CST)
  • Olya Kravchenko (Thu Feb 04 2016 - 21:23:13 CST)
  • Peter Freddolino (Sat Jan 30 2016 - 19:28:40 CST)
  • Maxim Belkin (Fri Jan 29 2016 - 14:18:57 CST)
  • Olya Kravchenko (Fri Jan 29 2016 - 13:36:24 CST)
  • Olya Kravchenko (Fri Jan 29 2016 - 13:17:28 CST)
  • Maxim Belkin (Fri Jan 29 2016 - 13:26:21 CST)
• Building a sphere of atoms around a chosen atom
  • Axel Kohlmeyer (Tue Jan 03 2006 - 05:03:53 CST)
  • Chaitanya Krishna A (Mon Jan 02 2006 - 08:01:49 CST)
• Building Al2O3 or Fe2O3
  • Morrissey, Liam S. (Sat Jul 21 2018 - 15:59:29 CDT)
• building amino acid modification
  • Bennion, Brian (Wed Aug 27 2014 - 18:00:26 CDT)
• Building amino acid simulation box.
  • surya narayanan chandrasekaran (Thu Nov 01 2018 - 23:45:39 CDT)
• building an uncoming sulfide bridge
  • JC Gumbart (Thu Jul 10 2008 - 11:17:46 CDT)
  • Jim Pfaendtner (Thu Jul 10 2008 - 08:56:32 CDT)
• building bilayer with DOPC or other lipids
  • PREETA DATTA (Fri Feb 16 2007 - 04:29:41 CST)
• Building Boron Nitride
  • khannan krishna (Fri Jun 13 2014 - 00:23:03 CDT)
• Building HMMM using patch files
  • Vermaas, Joshua (Wed Aug 09 2017 - 18:09:02 CDT)
  • Vermaas, Joshua (Wed Aug 02 2017 - 11:47:10 CDT)
  • Arthur Vale (Tue Aug 01 2017 - 23:36:30 CDT)
  • Vermaas, Joshua (Mon Jul 31 2017 - 12:57:20 CDT)
  • Arthur Vale (Sun Jul 30 2017 - 14:14:17 CDT)
  • Vermaas, Joshua (Fri Jul 21 2017 - 17:00:38 CDT)
  • Vermaas, Joshua (Fri Jul 21 2017 - 16:07:26 CDT)
  • Arthur Vale (Thu Jul 20 2017 - 21:32:45 CDT)
  • Vermaas, Joshua (Thu Jul 20 2017 - 17:18:55 CDT)
  • Arthur Vale (Thu Jul 20 2017 - 17:13:41 CDT)
  • Vermaas, Joshua (Thu Jul 20 2017 - 16:35:15 CDT)
  • Arthur Vale (Thu Jul 20 2017 - 15:19:54 CDT)
• building loops
  • Peter Freddolino (Tue Jan 13 2009 - 19:18:55 CST)
  • riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
• Building LPS membrane
  • dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
• Building micelles
  • ABEL Stephane (Mon Jun 14 2021 - 04:42:05 CDT)
  • Raman Preet Singh (Sun Jun 13 2021 - 13:29:34 CDT)
• Building NAMD 2.12 from Source with IB and CUDA
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 02 2017 - 02:57:01 CST)
• building plugins fails on tcl based plugins
  • Bennion, Brian (Mon Nov 19 2012 - 14:59:18 CST)
• Building Plugins to work with Mac Builds
  • John Stone (Tue Jul 14 2015 - 15:03:05 CDT)
  • John Stone (Tue Jul 14 2015 - 14:45:46 CDT)
  • Hart, David Blaine (Tue Jul 14 2015 - 14:52:02 CDT)
  • Hart, David Blaine (Mon Jul 06 2015 - 17:26:13 CDT)
  • John Stone (Mon Jul 06 2015 - 16:42:34 CDT)
  • Hart, David Blaine (Mon Jul 06 2015 - 11:56:30 CDT)
• Building plugins with _USE_ZLIB (how to activate preprocessor macro)
  • John Stone (Tue Mar 13 2018 - 17:10:13 CDT)
  • Christian Leitold (Tue Mar 13 2018 - 17:33:24 CDT)
  • Axel Kohlmeyer (Tue Mar 13 2018 - 16:53:08 CDT)
  • John Stone (Tue Mar 13 2018 - 16:48:50 CDT)
  • Axel Kohlmeyer (Tue Mar 13 2018 - 16:32:37 CDT)
  • Axel Kohlmeyer (Tue Mar 13 2018 - 16:30:12 CDT)
  • Christian Leitold (Tue Mar 13 2018 - 15:25:36 CDT)
  • John Stone (Tue Mar 13 2018 - 14:29:20 CDT)
  • Christian Leitold (Tue Mar 13 2018 - 14:19:48 CDT)
• Building plugins with Borland Bcc32
  • Nicolas CHARVIN (Tue Mar 15 2005 - 11:30:14 CST)
  • John Stone (Mon Mar 14 2005 - 09:47:35 CST)
  • Nicolas CHARVIN (Mon Mar 14 2005 - 04:41:04 CST)
• Building polymer psf from monomer topology
  • Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
• building psf with CMAP, old topology remark entries still in psf
  • Sebastian Stolzenberg (Fri Apr 10 2009 - 18:22:15 CDT)
• Building structure
  • Brittany Boykin (Sat Nov 29 2014 - 14:38:49 CST)
• Building unit cell from asymmetric unit
  • Sebastián Gutiérrez (Thu Jul 05 2012 - 11:33:43 CDT)
  • Axel Kohlmeyer (Thu Jul 05 2012 - 01:50:28 CDT)
  • Sebastián Gutiérrez (Wed Jul 04 2012 - 17:16:32 CDT)
• Building VMD in Windows
  • John Stone (Mon May 01 2006 - 10:17:19 CDT)
  • Chang Hu (Sun Apr 30 2006 - 22:42:34 CDT)
  • John Stone (Sun Apr 30 2006 - 09:11:01 CDT)
  • Chang Hu (Sun Apr 30 2006 - 01:07:52 CDT)
  • John Stone (Sat Apr 29 2006 - 22:48:09 CDT)
  • Chang Hu (Sat Apr 29 2006 - 22:12:23 CDT)
• building VMD is tricky -please help
  • Rich Cook (Wed Dec 02 2009 - 15:14:03 CST)
  • John Stone (Wed Dec 02 2009 - 13:39:53 CST)
  • Rich Cook (Wed Dec 02 2009 - 13:26:42 CST)
  • John Stone (Tue Dec 01 2009 - 19:51:37 CST)
  • Axel Kohlmeyer (Tue Dec 01 2009 - 18:31:54 CST)
  • Rich Cook (Tue Dec 01 2009 - 17:50:48 CST)
  • John Stone (Tue Dec 01 2009 - 15:27:37 CST)
  • John Stone (Tue Dec 01 2009 - 14:03:53 CST)
  • Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
  • John Stone (Tue Dec 01 2009 - 10:05:01 CST)
  • Pieter van 't Hof (Tue Dec 01 2009 - 03:40:05 CST)
  • Dipesh Bhattarai (Mon Nov 30 2009 - 19:32:09 CST)
  • Rich Cook (Mon Nov 30 2009 - 17:49:23 CST)
• building VMD on LINUX
  • John Stone (Tue Mar 17 2009 - 10:03:16 CDT)
  • Axel Kohlmeyer (Tue Mar 17 2009 - 08:58:38 CDT)
  • Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
• Building VMD on OS X 10.6 with Python and CUDA support
  • John Stone (Tue Jul 20 2010 - 10:22:23 CDT)
  • John Stone (Tue Jul 20 2010 - 10:23:56 CDT)
  • Ian Stokes-Rees (Fri Jul 16 2010 - 02:41:24 CDT)
  • Ian Stokes-Rees (Fri Jul 16 2010 - 02:24:38 CDT)
  • Ian Stokes-Rees (Thu Jul 15 2010 - 22:44:34 CDT)
• building VMD on SGI IRIX 6.x
  • Joseph Landman (Wed Mar 26 1997 - 11:55:35 CST)
• Building VMD on windows 2000
  • B. Bennion (Mon Dec 16 2002 - 15:35:51 CST)
• Building VMD under Windows 2000
  • John Stone (Mon Sep 18 2000 - 09:53:51 CDT)
  • Laurence F. Wood (Sun Sep 17 2000 - 19:42:28 CDT)
• building VMD with opnempi support
  • John Stone (Thu May 16 2013 - 15:52:41 CDT)
  • Vlad Cojocaru (Thu May 16 2013 - 11:00:43 CDT)
• building VMD with Ubuntu 18.04
  • Keister, Bradley (Mon Aug 03 2020 - 12:46:15 CDT)
  • Michael Bielecki (Mon Aug 03 2020 - 12:33:46 CDT)
  • Keister, Bradley (Mon Aug 03 2020 - 10:26:34 CDT)
  • Josh Vermaas (Mon Aug 03 2020 - 10:18:55 CDT)
  • Axel Kohlmeyer (Mon Aug 03 2020 - 09:52:16 CDT)
  • Keister, Bradley (Mon Aug 03 2020 - 09:12:25 CDT)
• Building zeolite cage
  • Abu Naser (Fri Nov 28 2014 - 07:08:00 CST)
• Buried Surface Area
  • John Stone (Fri May 13 2005 - 09:52:30 CDT)
  • Matthew Wilce (Fri May 13 2005 - 09:33:36 CDT)
• by using Axel's HOOMD plugin, convert pdb to xml and missing bond information
  • Axel Kohlmeyer (Mon Sep 26 2016 - 06:11:58 CDT)
  • Axel Kohlmeyer (Sun Sep 25 2016 - 23:20:00 CDT)
  • Darren Li (Sun Sep 25 2016 - 22:40:02 CDT)
• Bypassing MM parameterization of ligand in QMMM
  • Francesco Pietra (Wed May 06 2020 - 02:49:55 CDT)
• bypassing MolFrac step
  • Upadhyay, Him [him.upadhyay_at_ndsu.edu] (Wed Jul 31 2013 - 12:02:36 CDT)
  • Mayne, Christopher G (Wed Jul 31 2013 - 11:53:04 CDT)
  • Upadhyay, Him [him.upadhyay_at_ndsu.edu] (Wed Jul 31 2013 - 11:45:23 CDT)
  • Mayne, Christopher G (Wed Jul 31 2013 - 09:35:13 CDT)
  • surya narayanan chandrasekaran (Wed Jul 31 2013 - 05:50:57 CDT)
• C atom projection calculation
  • Giacomo Fiorin (Thu Nov 17 2022 - 08:03:42 CST)
  • Kodituwakku,Dimuthu Nirmani (Wed Nov 16 2022 - 22:23:23 CST)
• C NH1 C minimization error
  • Sourmaidou, Damiani (Thu Jan 17 2008 - 06:43:18 CST)
• C-terminus link to side chain amine
  • Al-Ali, Hassan (Tue Oct 12 2010 - 08:33:46 CDT)
• c_top2psf.pl
  • Axel Kohlmeyer (Sat Aug 30 2014 - 11:21:33 CDT)
  • sunyeping (Sat Aug 30 2014 - 10:14:02 CDT)
• ca contact map
  • John Stone (Tue Feb 17 2004 - 10:40:01 CST)
  • Y U Sasidhar (Mon Feb 16 2004 - 20:36:06 CST)
• CA distance command
  • ban arn (Thu Feb 03 2011 - 08:16:14 CST)
• CA-CA distances in a trayectory
  • Luis Gracia (Thu Apr 14 2005 - 15:44:45 CDT)
  • Luis Gracia (Thu Apr 14 2005 - 12:18:00 CDT)
  • Axel Kohlmeyer (Thu Apr 14 2005 - 09:07:57 CDT)
  • Nuno R. L. Ferreira (Thu Apr 14 2005 - 03:29:03 CDT)
  • Michel Espinoza-Fonseca (Wed Apr 13 2005 - 18:31:10 CDT)
• Ca-dist script
  • Justin Gullingsrud (Fri Oct 13 2000 - 13:29:23 CDT)
  • Troy Wymore (Thu Oct 12 2000 - 13:36:59 CDT)
• caculate the RMSD of 10 DNA
  • Justin Gullingsrud (Wed Mar 07 2001 - 23:16:30 CST)
  • Kuen Phon Wu (Wed Mar 07 2001 - 22:50:24 CST)
• Cafe 1.0 plugin does not recognize commands
  • DENILSON FERREIRA DE OLIVEIRA (Wed Jul 13 2022 - 12:43:56 CDT)
  • PaweÅ‚ KÄ™dzierski (Wed Jul 13 2022 - 04:09:11 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Wed Jul 13 2022 - 02:40:55 CDT)
  • John Stone (Tue Jul 12 2022 - 17:19:33 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Mon Jul 11 2022 - 09:07:19 CDT)
• CAFE plugin
  • Giacomo Fiorin (Wed Oct 13 2021 - 08:31:26 CDT)
  • José Villalaín (Wed Oct 13 2021 - 06:27:18 CDT)
• CaFE Plugin - Didn't Find vDW Parameter for Atom Type HT1 Error
  • Efthymiou, Christos (Thu Aug 18 2022 - 15:16:34 CDT)
  • Geist, Norman (Thu Aug 18 2022 - 12:50:18 CDT)
  • Efthymiou, Christos (Thu Aug 18 2022 - 11:11:35 CDT)
• CaFE VMD Plugin Errors at PB Calculation Step
  • Efthymiou, Christos (Fri Aug 19 2022 - 04:03:25 CDT)
• Calculate accessible surface area
  • John Stone (Tue Aug 17 2004 - 13:12:05 CDT)
  • Shirley Li (Mon Aug 16 2004 - 19:35:29 CDT)
  • John Stone (Mon Aug 16 2004 - 14:12:02 CDT)
  • Shirley Li (Fri Aug 13 2004 - 17:14:33 CDT)
• Calculate angles using fit_angle.tcl
  • amin_at_imtech.res.in (Sat Oct 15 2016 - 03:25:48 CDT)
• calculate atom distance between two chain
  • John Stone (Mon Jul 18 2011 - 09:57:59 CDT)
  • hamze rahimi (Mon Jul 18 2011 - 06:31:04 CDT)
• Calculate CC in MDFF
  • Mihaljevic-Juric Paula (Mme) (Wed Sep 25 2019 - 10:26:41 CDT)
  • John Stone (Wed Sep 25 2019 - 10:34:27 CDT)
• calculate charges of the binding site residues with psfgen
  • Axel Kohlmeyer (Sun May 10 2009 - 07:00:29 CDT)
  • Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
  • Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
• Calculate density
  • Axel Kohlmeyer (Wed Nov 21 2007 - 14:20:15 CST)
  • Jianhui Tian (Mon Nov 19 2007 - 15:21:20 CST)
• Calculate End-End distance for DCD
  • Ana Celia Araujo Vila Verde (Tue Mar 13 2007 - 16:17:48 CDT)
  • Jianhui Tian (Tue Mar 13 2007 - 15:17:00 CDT)
• calculate end-to-end distance with trajectory files
  • John Stone (Mon Oct 22 2012 - 10:49:01 CDT)
  • Eric Lovejoy (Sat Oct 20 2012 - 16:44:13 CDT)
• Calculate Free Binding Energy of Protein-Protein Complex: CaFE Extension
  • Efthymiou, Christos (Tue Jun 28 2022 - 14:26:49 CDT)
• Calculate Free Energy of Protein-Protein Binding
  • Giacomo Fiorin (Thu May 12 2022 - 15:23:05 CDT)
  • Efthymiou, Christos (Thu May 12 2022 - 13:55:43 CDT)
• Calculate Free Volume?
  • Axel Kohlmeyer (Mon Oct 19 2009 - 08:59:32 CDT)
  • YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
• calculate g(r)
  • Axel Kohlmeyer (Sun Oct 15 2017 - 14:09:46 CDT)
  • melika_ bm85 (Sun Oct 15 2017 - 09:29:56 CDT)
  • Axel Kohlmeyer (Sun Oct 15 2017 - 08:42:56 CDT)
  • Monika Madhavi (Sun Oct 15 2017 - 07:44:44 CDT)
  • melika_ bm85 (Sun Oct 15 2017 - 07:36:10 CDT)
  • Axel Kohlmeyer (Sun Oct 15 2017 - 07:00:57 CDT)
  • Monika Madhavi (Sun Oct 15 2017 - 07:14:20 CDT)
  • melika_ bm85 (Sun Oct 15 2017 - 05:49:12 CDT)
• calculate HBOND
  • Martin, Erik W (Tue Nov 13 2012 - 14:21:26 CST)
  • George Lai (Tue Nov 13 2012 - 12:54:23 CST)
  • Martin, Erik W (Mon Nov 12 2012 - 22:04:11 CST)
  • George Lai (Mon Nov 12 2012 - 19:48:50 CST)
• calculate radius of empty space between selected residue
  • Yogesh Sharma (Wed Oct 20 2021 - 04:31:59 CDT)
• calculate rmsd in a loop:feedback [sorry if you get it twice]
  • Axel Kohlmeyer (Fri Nov 18 2005 - 08:54:02 CST)
  • andrea spitaleri (Fri Nov 18 2005 - 10:16:01 CST)
  • andrea spitaleri (Fri Nov 18 2005 - 05:31:21 CST)
  • l.spitzer_at_fr.fournierpharma.com (Fri Nov 18 2005 - 04:48:26 CST)
  • Nuno R. L. Ferreira (Fri Nov 18 2005 - 04:10:16 CST)
  • andrea spitaleri (Fri Nov 18 2005 - 03:42:29 CST)
  • Luis Gracia (Thu Nov 17 2005 - 12:11:20 CST)
  • Axel Kohlmeyer (Thu Nov 17 2005 - 06:20:35 CST)
  • Nuno R. L. Ferreira (Thu Nov 17 2005 - 03:31:13 CST)
  • andrea spitaleri (Thu Nov 17 2005 - 02:50:19 CST)
• calculate side-chain dihedral/torsion angles
  • Ajasja LjubetiÄ� (Tue Jun 29 2010 - 09:14:08 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 14:24:17 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 12:36:36 CDT)
  • Axel Kohlmeyer (Mon Apr 12 2010 - 08:58:28 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 08:45:13 CDT)
  • Axel Kohlmeyer (Mon Apr 12 2010 - 08:08:08 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 06:38:16 CDT)
  • Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
  • Ajasja LjubetiÄ� (Mon Apr 12 2010 - 03:43:25 CDT)
• calculate structure of protein
  • Ashar Malik (Fri Oct 03 2014 - 07:18:08 CDT)
  • Rangeen Othman (Fri Oct 03 2014 - 06:45:21 CDT)
• calculate the angle between two principal axes from two selecton
  • sunyeping (Thu Sep 29 2016 - 04:49:57 CDT)
• Calculate the area of overlap?
  • John Stone (Mon May 23 2005 - 10:22:28 CDT)
  • Brian Kidd (Sat May 21 2005 - 02:01:04 CDT)
• Calculate the bond and angle energy of a glucosidic linkage using NAMD Energy plugin
  • Peter Freddolino (Mon Feb 25 2019 - 07:47:05 CST)
  • Ern Ong (Mon Feb 25 2019 - 04:39:21 CST)
• calculate the percentage of beta-sheet and alpha helix with time evolution
  • John Stone (Thu Apr 04 2019 - 23:55:04 CDT)
  • Saikat Pal (Wed Apr 03 2019 - 00:24:11 CDT)
• calculate the solvent molecule within a cut off from protein
  • aiswarya pawar (Thu Sep 15 2011 - 05:36:25 CDT)
• Calculate torsional angle with big_dcd adding a boolean control for pyrimidines and purines selection
  • Josh Vermaas (Wed Aug 26 2015 - 09:09:01 CDT)
  • Josh Vermaas (Wed Aug 26 2015 - 08:04:56 CDT)
  • Mahad Gatti (Wed Aug 26 2015 - 05:41:09 CDT)
• Calculate VolMap for every frame by a script
  • Axel Kohlmeyer (Tue Feb 27 2007 - 17:25:16 CST)
  • Bob Johnson (Tue Feb 27 2007 - 16:21:12 CST)
• calculate volume
  • John Stone (Sat Mar 08 2008 - 19:03:06 CST)
  • Dong Xu (Sat Mar 08 2008 - 17:28:39 CST)
  • Axel Kohlmeyer (Sat Mar 08 2008 - 12:29:19 CST)
  • Dong Xu (Sat Mar 08 2008 - 11:09:36 CST)
  • John Stone (Sat Mar 08 2008 - 00:01:06 CST)
  • Dong Xu (Fri Mar 07 2008 - 22:46:28 CST)
  • John Stone (Fri Mar 07 2008 - 22:20:45 CST)
  • Dong Xu (Fri Mar 07 2008 - 21:20:40 CST)
• Calculating acyl chain order parameter profile on phospholipid vesicles
  • dimka (Tue Jan 13 2009 - 10:28:43 CST)
  • Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
• Calculating and drawing symmetry axes
  • Eugene Valkov (Thu Dec 02 2004 - 13:37:14 CST)
• Calculating angles between subunits
  • John Stone (Thu Nov 06 2003 - 16:10:35 CST)
  • John Stone (Fri Oct 24 2003 - 19:11:25 CDT)
  • Markus Laub (Wed Oct 22 2003 - 07:37:44 CDT)
• calculating b-factors from trajectories
  • gozorows_at_uci.edu (Wed May 23 2007 - 14:00:53 CDT)
  • Brian Bennion (Wed May 23 2007 - 10:34:57 CDT)
  • Leandro Martínez (Tue May 22 2007 - 20:57:01 CDT)
  • gozorows_at_uci.edu (Tue May 22 2007 - 17:53:27 CDT)
• Calculating Bias for Well-tempered metadynamics
  • Giacomo Fiorin (Sat Apr 25 2020 - 19:51:01 CDT)
  • Giacomo Fiorin (Fri Apr 24 2020 - 13:37:28 CDT)
  • Giacomo Fiorin (Thu Apr 23 2020 - 19:00:11 CDT)
• Calculating changes
  • Peter Freddolino (Tue Dec 12 2006 - 14:07:18 CST)
  • Per Jr. Greisen (Tue Dec 12 2006 - 12:56:37 CST)
• Calculating density for a molecule
  • Research Jubilant (Fri Feb 07 2014 - 11:36:41 CST)
• Calculating Diffusion Coefficient Using VMD
  • Philippe Bopp (Tue May 01 2018 - 21:38:17 CDT)
  • Axel Kohlmeyer (Tue May 01 2018 - 19:25:54 CDT)
  • Sonibare, Kolawole (Tue May 01 2018 - 18:22:52 CDT)
  • Axel Kohlmeyer (Mon Apr 23 2018 - 14:01:31 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 13:29:19 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 12:22:39 CDT)
  • Giacomo Fiorin (Mon Apr 23 2018 - 11:12:49 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 10:58:56 CDT)
  • Sonibare, Kolawole (Mon Apr 23 2018 - 08:56:34 CDT)
• Calculating dipole moment of protein
  • Axel Kohlmeyer (Fri Mar 02 2007 - 07:41:25 CST)
  • Per Jr. Greisen (Fri Mar 02 2007 - 06:26:23 CST)
• calculating distance between center of geometry/mass of methyl hydrogens for all residue pairs
  • Zu Thur Yew (Mon Mar 19 2007 - 18:48:41 CDT)
• calculating distance between center of mass of two set of residues
  • Josh Vermaas (Thu Jun 27 2013 - 14:29:11 CDT)
  • Peterson J (Thu Jun 27 2013 - 13:06:44 CDT)
• Calculating distances from command line VMD 1.9.2
  • debra ragland (Tue Sep 01 2015 - 08:08:11 CDT)
• calculating lipid order parameters
  • Philip Fowler (Wed Sep 21 2005 - 07:54:59 CDT)
• Calculating mean square displacement and removing PBC
  • Axel Kohlmeyer (Thu Oct 22 2020 - 15:03:21 CDT)
  • Josh Vermaas (Thu Oct 22 2020 - 14:50:49 CDT)
  • RonitS Chem (Thu Oct 22 2020 - 14:33:57 CDT)
  • Axel Kohlmeyer (Thu Oct 22 2020 - 14:28:43 CDT)
  • RonitS Chem (Thu Oct 22 2020 - 14:16:06 CDT)
  • Axel Kohlmeyer (Thu Oct 22 2020 - 13:47:24 CDT)
  • RonitS Chem (Thu Oct 22 2020 - 13:09:34 CDT)
• Calculating minimal distance between two groups
  • eladp_at_hplus.tau.ac.il (Mon Nov 14 2005 - 10:02:59 CST)
• calculating number of water and osmolytes molecules at particular distance from protein surface.
  • Ashar Malik (Thu Jan 31 2019 - 00:00:10 CST)
  • ISHRAT JAHAN (Wed Jan 30 2019 - 23:09:41 CST)
• Calculating parameters in lipid bilayers
  • Andrés Morales (Thu Oct 20 2011 - 22:04:03 CDT)
• Calculating pocket volume
  • ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
  • Peter Freddolino (Thu Aug 28 2008 - 17:27:44 CDT)
• Calculating RDF from xyz file
  • Axel Kohlmeyer (Thu Mar 01 2012 - 17:36:46 CST)
  • siladitya mukherjee (Thu Mar 01 2012 - 16:38:54 CST)
• Calculating rdfs without the VMD gui
  • Salvador H-V (Thu Mar 14 2013 - 08:26:32 CDT)
  • Josh Vermaas (Wed Mar 13 2013 - 19:03:32 CDT)
  • Salvador H-V (Wed Mar 13 2013 - 17:46:25 CDT)
  • Josh Vermaas (Wed Mar 13 2013 - 15:15:18 CDT)
  • Salvador H-V (Wed Mar 13 2013 - 10:37:39 CDT)
  • Jérôme Hénin (Wed Mar 13 2013 - 02:36:42 CDT)
  • Salvador H-V (Tue Mar 12 2013 - 14:42:57 CDT)
• Calculating residence time
  • M K (Fri Apr 03 2015 - 02:49:45 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 02:37:04 CDT)
  • M K (Wed Apr 01 2015 - 23:08:33 CDT)
• calculating RMSD for a trajectory file
  • Ashar Malik (Mon Dec 21 2015 - 05:20:43 CST)
  • Mai Aamer (Mon Dec 21 2015 - 04:44:53 CST)
• Calculating RMSD on two sets of points
  • Axel Kohlmeyer (Tue May 10 2011 - 10:43:51 CDT)
  • Carolyn Phillips (Tue May 10 2011 - 10:13:56 CDT)
  • Carolyn Phillips (Tue May 10 2011 - 09:57:25 CDT)
• Calculating RMSF for a lot of trajectories
  • Josh Vermaas (Thu May 29 2014 - 13:22:25 CDT)
  • Axel Kohlmeyer (Thu May 29 2014 - 11:59:26 CDT)
  • Ricard Argelaguet (Thu May 29 2014 - 11:22:18 CDT)
• Calculating RMSF plots without using scripts!!!
  • Robert Selwyne (Mon Jun 05 2006 - 03:36:54 CDT)
• Calculating system net charge with tcl in VMD
  • Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
  • Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
  • Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
  • DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
• Calculating the Tilt Angle of a non-helical peptide
  • Axel Kohlmeyer (Wed Mar 19 2008 - 21:52:58 CDT)
  • Axel Kohlmeyer (Wed Mar 19 2008 - 21:07:06 CDT)
  • Arneh Babakhani (Wed Mar 19 2008 - 21:37:45 CDT)
  • Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
• Calculating the torsion angles in nucleic acids
  • Peter Freddolino (Thu Sep 11 2008 - 08:52:36 CDT)
  • mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
• Calculating time variation of potential.
  • Pranjal Sur (Fri Sep 23 2022 - 04:47:39 CDT)
• calculating total energy
  • John Stone (Tue Sep 17 2013 - 00:08:49 CDT)
  • rasti_at_ut.ac.ir (Sun Sep 15 2013 - 03:17:42 CDT)
• Calculating volumes enclosed by SAS
  • Deepangi Pandit (Fri Nov 21 2008 - 16:09:12 CST)
  • Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
• Calculating volumetric data for a molecule
  • John Stone (Tue Jul 24 2007 - 23:10:06 CDT)
  • Cesar Luis Avila (Tue Jul 24 2007 - 17:30:43 CDT)
• calculation hydrogen bond.
  • JC Gumbart (Fri Oct 21 2011 - 06:55:18 CDT)
  • subrata paul (Thu Oct 20 2011 - 02:19:04 CDT)
• calculation limit of gofr?
  • Axel Kohlmeyer (Thu Jul 05 2007 - 09:47:43 CDT)
  • Philipp Schön (Thu Jul 05 2007 - 10:16:00 CDT)
• calculation of alpha helical content
  • Peter Freddolino (Tue Dec 11 2007 - 12:05:04 CST)
  • L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 11:18:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 10:29:24 CST)
  • Peter Freddolino (Tue Dec 11 2007 - 10:39:05 CST)
• calculation of angular distribution function
  • Subrata Paul (Thu Sep 05 2013 - 09:32:12 CDT)
• calculation of binding energy
  • vani panguluri (Wed Mar 16 2011 - 23:06:45 CDT)
• calculation of free energy between lipid membrane and protein
  • Axel Kohlmeyer (Thu Mar 01 2007 - 11:40:00 CST)
  • Shulin Zhuang (Thu Mar 01 2007 - 01:11:10 CST)
  • Shulin Zhuang (Thu Mar 01 2007 - 00:17:25 CST)
• calculation of geometric centers of the rings
  • Vikas Varshney (Tue Jul 26 2016 - 08:15:13 CDT)
• Calculation of gofr for non-orthorhombic boxes
  • Axel Kohlmeyer (Tue Jan 01 2019 - 22:55:07 CST)
  • HEMANTH H 18310019 (Tue Jan 01 2019 - 02:55:14 CST)
• Calculation of ligand displacement Vs time
  • Ban Arn (Mon Jan 30 2012 - 03:53:27 CST)
• Calculation of no. of turns, pitch in DNA
  • Anurag Sharma (Wed Jun 12 2013 - 13:49:04 CDT)
  • Anurag Sharma (Wed Jun 05 2013 - 17:04:45 CDT)
• Calculation of pair distribution function
  • shyam sharma (Sat Jun 09 2018 - 00:19:21 CDT)
• Calculation of residue pair energy values
  • Vermaas, Josh (Mon Feb 15 2021 - 13:51:56 CST)
  • Manas Kohli (Mon Feb 15 2021 - 13:02:25 CST)
  • Peter Freddolino (Mon Feb 15 2021 - 11:07:34 CST)
  • Manas Kohli (Mon Feb 15 2021 - 08:51:54 CST)
  • Daniel Fellner (Sun Feb 14 2021 - 19:23:10 CST)
  • Daniel STERBULEAC (Sun Feb 14 2021 - 16:46:12 CST)
  • Manas Kohli (Sun Feb 14 2021 - 07:54:51 CST)
• calculation of RMS values
  • Andrew Dalke (Wed Aug 19 1998 - 13:49:12 CDT)
  • Christoph Schneider (Wed Aug 19 1998 - 04:05:51 CDT)
• Calculation of RMSF
  • John Stone (Mon Dec 19 2005 - 17:21:51 CST)
  • John Stone (Wed Dec 14 2005 - 18:45:30 CST)
  • h9826299_at_hkusua.hku.hk (Wed Dec 14 2005 - 17:10:28 CST)
• calculation of rotation angle
  • Giacomo Fiorin (Wed Mar 22 2023 - 05:27:42 CDT)
  • Norbert Straeter (Wed Mar 22 2023 - 03:35:17 CDT)
  • Ashar Malik (Tue Mar 21 2023 - 15:50:07 CDT)
  • Sangita Kachhap (Tue Mar 21 2023 - 13:05:05 CDT)
• Calculation of VAF using signalproc plugin
  • Axel Kohlmeyer (Wed Jun 05 2013 - 00:40:52 CDT)
  • Mingchao Wang (Tue Jun 04 2013 - 21:04:40 CDT)
  • Axel Kohlmeyer (Mon Jun 03 2013 - 03:16:35 CDT)
  • Mingchao Wang (Mon Jun 03 2013 - 00:33:25 CDT)
• Calculation the Surface Area/Volume of a Protein Cavity
  • MUHAMMAD IMTIA SHAFIQ (Thu Dec 10 2009 - 05:24:12 CST)
• Call for participation: ISQBP Meeting, Telluride 15-19.06.2014
  • Vlad Cojocaru (Mon Mar 10 2014 - 11:38:42 CDT)
• Call to Stride program failed
  • John Stone (Fri Feb 18 2005 - 10:35:00 CST)
  • Jérôme Hénin (Fri Feb 18 2005 - 10:05:37 CST)
  • John Stone (Fri Feb 18 2005 - 09:49:33 CST)
  • Jérôme Hénin (Fri Feb 18 2005 - 09:42:27 CST)
• Calling all DCD files in a directory sequentially using CatDCD
  • Cosseddu, Salvatore (Tue Jan 24 2012 - 03:47:29 CST)
  • Bryan Roessler (Mon Jan 23 2012 - 18:24:07 CST)
  • Bryan Roessler (Mon Jan 23 2012 - 16:15:48 CST)
  • John Stone (Mon Jan 23 2012 - 15:24:51 CST)
  • Bryan Roessler (Mon Jan 23 2012 - 15:11:34 CST)
• Calling Python hackers....
  • John Stone (Tue Feb 08 2005 - 14:00:36 CST)
  • Charles_at_Schwieters.org (Tue Feb 08 2005 - 11:11:21 CST)
  • John Stone (Sun Feb 06 2005 - 20:00:30 CST)
  • Justin Gullingsrud (Fri Feb 04 2005 - 17:50:58 CST)
  • John Stone (Fri Feb 04 2005 - 14:56:59 CST)
• calling scripts from the command line
  • John Stone (Thu Dec 08 2005 - 18:12:26 CST)
  • Galip Gurkan Yardimci (Thu Dec 01 2005 - 04:36:45 CST)
• Calling VMD from Linux Cluster
  • John Stone (Fri Aug 29 2014 - 17:20:47 CDT)
  • Gonzalez, Aaron (Fri Aug 29 2014 - 12:34:02 CDT)
• Camera in VMD!!!
  • Schreiner Eduard (Sat Oct 25 2008 - 00:18:58 CDT)
  • Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
• camera navigator question
  • John Stone (Thu Feb 26 2015 - 14:13:24 CST)
  • Nuno Sousa Cerqueira (Mon Feb 23 2015 - 16:42:16 CST)
• camera position and scale
  • John Stone (Wed Feb 01 2012 - 23:18:23 CST)
  • Arham Amouie (Mon Jan 09 2012 - 08:09:46 CST)
• Can a script change the projection?
  • Jeff Taylor (Mon Jun 04 2001 - 15:04:53 CDT)
• Can any of you help me out in building VMD pls
  • John Stone (Mon Mar 11 2002 - 00:11:44 CST)
  • John Stone (Fri Mar 08 2002 - 09:47:04 CST)
  • Kiran, Kotresh (Fri Mar 08 2002 - 05:48:35 CST)
• CAN ANY ONE HELP ME
  • John Stone (Wed Jun 02 2010 - 12:51:24 CDT)
  • vani panguluri (Wed Jun 02 2010 - 11:44:33 CDT)
  • John Stone (Wed Jun 02 2010 - 11:01:15 CDT)
  • vani panguluri (Wed Jun 02 2010 - 10:09:08 CDT)
• Can anyone help me get the coordinate of the cylinders in the cartoon representation?
  • John Stone (Wed Mar 03 2010 - 10:56:00 CST)
  • Chen, Bo (NIH/NIDDK) [F] (Fri Feb 26 2010 - 11:11:42 CST)
• Can anyone help me out with this script
  • John Stone (Sun Apr 01 2007 - 23:03:24 CDT)
  • Jianhui Tian (Sat Mar 31 2007 - 19:50:43 CDT)
  • John Stone (Sat Mar 31 2007 - 00:05:17 CDT)
  • Jianhui Tian (Fri Mar 30 2007 - 14:49:45 CDT)
• Can bonds radius be controlled by tcl command?
  • Axel Kohlmeyer (Wed May 13 2009 - 17:55:17 CDT)
  • Roman Petrenko (Wed May 13 2009 - 17:09:09 CDT)
  • John Stone (Wed May 13 2009 - 16:19:16 CDT)
  • accomp lin (Wed May 13 2009 - 03:54:47 CDT)
• Can Catdcd Write Out Periodic Cell Size Information?
  • Tessa Young (Tue Nov 29 2011 - 23:06:25 CST)
  • Pablo M. De Biase (Mon Nov 28 2011 - 17:41:40 CST)
  • Axel Kohlmeyer (Mon Nov 28 2011 - 17:13:02 CST)
  • Jeffrey Potoff (Mon Nov 28 2011 - 16:30:08 CST)
  • Pablo M. De Biase (Mon Nov 28 2011 - 16:11:36 CST)
  • Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
  • Axel Kohlmeyer (Mon Nov 28 2011 - 11:45:47 CST)
  • Pablo M. De Biase (Mon Nov 28 2011 - 10:39:55 CST)
  • Tessa Young (Mon Nov 28 2011 - 01:20:31 CST)
• Can I build a structure by VMD?
  • Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
  • John Stone (Wed Jul 15 2009 - 14:36:56 CDT)
• Can I calculate B-factor using VMD
  • Maximilian Ebert (Wed Feb 27 2013 - 15:54:51 CST)
  • John Stone (Wed Feb 27 2013 - 10:22:00 CST)
  • Sindrila Dutta Banik (Tue Feb 26 2013 - 01:19:10 CST)
• can I change the axes type to look like something like a graduated coordinate?
  • Tristan Croll (Sun Nov 08 2015 - 19:33:17 CST)
  • Nima Soltani (Sun Nov 08 2015 - 15:23:51 CST)
• can I combine several dcd files into one dcd file?
  • John E. Kerrigan (Wed Jan 05 2005 - 12:52:38 CST)
  • Justin Gullingsrud (Wed Jan 05 2005 - 10:30:56 CST)
  • mashaojie163 (Wed Jan 05 2005 - 08:55:14 CST)
• Can I load NetCDF trajectories from AMBER in VMD on a Windows machine?
  • Axel Kohlmeyer (Sat Jan 17 2015 - 17:11:07 CST)
  • Emilio Lence (Fri Jan 16 2015 - 06:12:54 CST)
• can not compile VMD plugin
  • hongphuc nguyen (Wed Jun 22 2011 - 22:48:34 CDT)
  • hongphuc nguyen (Wed Jun 22 2011 - 22:15:55 CDT)
• Can not enter text in VMD plugin window
  • John Stone (Mon Apr 28 2008 - 13:25:30 CDT)
  • Dong Xu (Mon Apr 28 2008 - 13:04:52 CDT)
  • John Stone (Sat Apr 26 2008 - 00:25:15 CDT)
  • Dong Xu (Sat Apr 26 2008 - 00:10:04 CDT)
  • John Stone (Fri Apr 25 2008 - 21:53:05 CDT)
  • Axel Kohlmeyer (Fri Apr 25 2008 - 21:52:12 CDT)
  • Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
• can not import Hessian/charge from single point calculation
  • Bennion, Brian (Wed Jun 22 2011 - 12:55:36 CDT)
  • Bennion, Brian (Tue Jun 21 2011 - 12:04:46 CDT)
  • hongphuc nguyen (Tue Jun 21 2011 - 03:14:15 CDT)
• Can not run VMD in interactive mode on the supercomputer from Mac
  • Diego Gomes (Thu Apr 11 2024 - 09:48:49 CDT)
  • mohamed marzouk (Thu Apr 11 2024 - 01:16:59 CDT)
• can not visualize bond in vmd
  • Chunli Yan (Fri Nov 04 2022 - 12:49:26 CDT)
• Can paratools really parametrize a structure? Is it really finished?
  • Ranyere Deyler (Mon Feb 28 2011 - 10:55:21 CST)
• Can specden produce the autocorrelation and not only the powerspectrum?
  • Giacomo Fiorin (Wed Feb 07 2018 - 08:51:27 CST)
  • Giacomo Fiorin (Tue Feb 06 2018 - 13:10:44 CST)
  • Axel Kohlmeyer (Tue Feb 06 2018 - 12:46:27 CST)
  • sperez14_at_us.es (Tue Feb 06 2018 - 12:13:34 CST)
• Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program?
  • Anton Arkhipov (Tue Apr 28 2009 - 10:34:04 CDT)
  • Axel Kohlmeyer (Tue Apr 28 2009 - 08:32:24 CDT)
  • wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
• Can VMD add other organic solvent into system?
  • weikai (Wed Sep 28 2005 - 02:51:38 CDT)
• Can VMD add other solvent except water in system?
  • Leonardo Sepulveda Durán (Mon Sep 26 2005 - 10:59:58 CDT)
  • John Stone (Mon Sep 26 2005 - 10:12:51 CDT)
  • Joshua D. Moore (Mon Sep 26 2005 - 06:21:38 CDT)
  • weikai (Mon Sep 26 2005 - 03:17:42 CDT)
• can vmd add protons to particular atoms?
  • yp sun (Tue Dec 18 2012 - 00:43:01 CST)
• Can VMD build predicted protein structures by homology?
  • John Stone (Fri Dec 03 2010 - 12:02:47 CST)
  • Seweryn Bialasiewicz (Mon Nov 29 2010 - 21:43:11 CST)
• can VMD display a box?
  • Marc Baaden (Thu Nov 28 2002 - 07:26:05 CST)
  • Minerva Gonzalez (Thu Nov 28 2002 - 12:23:15 CST)
• Can vmd do symmetry operation?
  • John Stone (Wed Oct 12 2005 - 17:03:56 CDT)
  • mashaojie163 (Tue Oct 11 2005 - 21:49:00 CDT)
• can VMD render movies in stereo quad-buffered mode?
  • John Stone (Fri Oct 31 2014 - 14:48:09 CDT)
  • Jose Borreguero (Fri Oct 31 2014 - 13:11:58 CDT)
• Can vmd select residues in radius of 3.5 to a specific residue?
  • John Stone (Fri Mar 18 2005 - 08:16:15 CST)
  • Marc Q. Ma (Fri Mar 18 2005 - 07:59:59 CST)
  • J. Rui Rodrigues (Fri Mar 18 2005 - 06:21:08 CST)
  • scopio (Fri Mar 18 2005 - 05:52:43 CST)
• can VMD show artificial bond info?
  • John Stone (Wed Oct 19 2005 - 18:52:46 CDT)
  • jiwu liu (Wed Oct 19 2005 - 18:04:31 CDT)
• Can VMD show the interactions between different structure part?
  • Ben Chern (Thu Mar 27 2008 - 20:26:13 CDT)
  • Ben Chern (Thu Mar 27 2008 - 06:35:56 CDT)
  • Axel Kohlmeyer (Thu Mar 27 2008 - 06:43:41 CDT)
  • Axel Kohlmeyer (Wed Mar 26 2008 - 23:19:40 CDT)
  • Ben Chern (Wed Mar 26 2008 - 22:20:57 CDT)
• Can VMD visualize forces?
  • Thomas C. Bishop (Fri Jan 25 2008 - 09:44:29 CST)
  • John Stone (Thu Jan 24 2008 - 18:01:20 CST)
  • Yinglong Miao (Thu Jan 24 2008 - 17:16:14 CST)
• can we control the number and distribution of solvate molecular
  • John Stone (Wed Aug 12 2009 - 16:14:30 CDT)
  • pxq ÅÓÑ©ÇÛ (Wed Aug 12 2009 - 03:02:33 CDT)
• can we delete in command line?
  • Abhijit Muley (Wed Aug 20 2014 - 09:09:27 CDT)
  • John Stone (Wed Aug 20 2014 - 08:34:33 CDT)
  • Albert (Wed Aug 20 2014 - 04:29:42 CDT)
• can we export VMD scene as webGL file?
  • Albert (Sat Oct 17 2015 - 02:23:54 CDT)
  • Albert (Sat Oct 17 2015 - 02:23:18 CDT)
  • Albert (Sat Oct 17 2015 - 02:22:56 CDT)
  • Albert (Fri Oct 16 2015 - 16:52:19 CDT)
  • John Stone (Fri Oct 16 2015 - 17:01:34 CDT)
  • Albert (Fri Oct 16 2015 - 16:22:59 CDT)
  • John Stone (Fri Oct 16 2015 - 16:34:10 CDT)
• Can we fix the position of two atoms while minimization?
  • John Stone (Wed Sep 29 2004 - 12:40:52 CDT)
  • Shahid Qamar (Wed Sep 29 2004 - 10:39:50 CDT)
• Can we get secondary structure from PDB files?
  • Ben Chern (Wed Mar 26 2008 - 22:12:12 CDT)
  • John Stone (Wed Mar 26 2008 - 21:26:46 CDT)
  • Ben Chern (Wed Mar 26 2008 - 20:44:00 CDT)
  • Axel Kohlmeyer (Wed Mar 26 2008 - 06:15:42 CDT)
  • Ben Chern (Wed Mar 26 2008 - 04:02:04 CDT)
• can we visualize sos file?
  • John Stone (Wed Nov 12 2014 - 22:42:24 CST)
  • Albert (Sat Nov 08 2014 - 10:18:08 CST)
• Can you show me an example of the .xyz file that is used to calculate the IR spectrum
  • Axel Kohlmeyer (Mon Feb 23 2009 - 14:46:18 CST)
  • Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
• can't add packages
  • Axel Kohlmeyer (Sat Jul 28 2007 - 17:32:46 CDT)
  • karan uppal (Sat Jul 28 2007 - 12:59:37 CDT)
• can't build VMD on MacOs Ventura: use of undeclared identifier 'msms'
  • Alexander Beerhoff (Tue Mar 07 2023 - 19:55:15 CST)
  • John Stone (Tue Mar 07 2023 - 12:55:57 CST)
  • Alexander Beerhoff (Tue Mar 07 2023 - 08:56:42 CST)
• Can't compile VMD 1.8.3: Tachyon 0.97 needed
  • John Stone (Fri Mar 18 2005 - 09:42:22 CST)
  • Sangwoo Shim (Fri Mar 18 2005 - 03:49:33 CST)
  • John Stone (Thu Feb 17 2005 - 09:48:00 CST)
  • Sangwoo Shim (Thu Feb 17 2005 - 01:54:04 CST)
• Can't connect to BioCORE
  • M Suma (Tue Mar 26 2024 - 02:03:14 CDT)
• Can't execvp vmd_SOLARISX86
  • Austin Small (Tue Sep 25 2007 - 16:14:16 CDT)
  • John Stone (Sun Sep 23 2007 - 21:49:23 CDT)
  • Austin Small (Sun Sep 23 2007 - 23:42:50 CDT)
• CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES
  • snoze pa (Sun Feb 14 2010 - 12:47:04 CST)
  • Francesco Pietra (Sun Feb 14 2010 - 11:32:57 CST)
  • Francesco Pietra (Sun Feb 14 2010 - 10:26:01 CST)
• Can't find C-PDB bond parameters
  • Francesco Pietra (Mon Feb 15 2010 - 03:46:29 CST)
• can't find file
  • sarah k (Sun Apr 04 2010 - 12:02:56 CDT)
  • John Stone (Mon Mar 29 2010 - 10:11:23 CDT)
  • sarah k (Mon Mar 29 2010 - 02:46:20 CDT)
• Can't import python math module
  • John Stone (Mon Mar 24 2003 - 10:47:19 CST)
  • Scott Stagg (Fri Mar 21 2003 - 10:16:14 CST)
• Can't load a large dcd?
  • John Stone (Fri Jan 27 2006 - 15:28:31 CST)
  • John Stone (Thu Jan 26 2006 - 10:41:41 CST)
  • Axel Kohlmeyer (Thu Jan 26 2006 - 07:09:22 CST)
  • Vineet Pande (Thu Jan 26 2006 - 01:33:19 CST)
  • Axel Kohlmeyer (Wed Jan 25 2006 - 10:52:41 CST)
  • John Stone (Wed Jan 25 2006 - 10:23:36 CST)
  • Vineet Pande (Wed Jan 25 2006 - 06:21:53 CST)
• can't read "::vmd_pick_event": no such variable
  • Alex Richards (Wed Jun 26 2013 - 11:13:33 CDT)
• can't read "viewplist": no such variable
  • John Stone (Mon Feb 01 2016 - 10:31:41 CST)
  • Dimitrova, Maria (Mon Feb 01 2016 - 09:05:41 CST)
• Can't read DCD files generated using NAMD.
  • Richard Wood (Tue Jun 21 2016 - 06:12:17 CDT)
  • Richard Wood (Mon Jun 20 2016 - 07:47:38 CDT)
  • Richard Wood (Sun Jun 19 2016 - 08:42:21 CDT)
  • Richard Wood (Sat Jun 18 2016 - 09:20:09 CDT)
  • Richard Wood (Fri Jun 17 2016 - 05:51:42 CDT)
  • John Stone (Thu Jun 16 2016 - 19:39:05 CDT)
  • Richard Wood (Thu Jun 16 2016 - 19:17:04 CDT)
  • Richard Wood (Thu Jun 16 2016 - 16:53:11 CDT)
  • John Stone (Thu Jun 16 2016 - 15:02:42 CDT)
  • Richard Wood (Thu Jun 16 2016 - 11:12:53 CDT)
• can't read pdb file
  • Mary Lowe (Sun Mar 25 2007 - 08:26:31 CDT)
  • John Stone (Sat Mar 24 2007 - 00:52:55 CDT)
  • Mary Lowe (Fri Mar 23 2007 - 21:40:18 CDT)
• can't see all frames in XYZ file
  • John Stone (Thu Jun 30 2005 - 14:03:37 CDT)
  • Valere Chen (Wed Jun 29 2005 - 14:42:50 CDT)
• Can't set graphics window position to 0,0
  • John Stone (Thu Mar 29 2012 - 10:20:27 CDT)
  • Christoph Willing (Tue Mar 27 2012 - 18:17:10 CDT)
• can't use arrow key in vmd -disp text mode
  • Xinqiang Ding (Sun Nov 09 2014 - 11:00:14 CST)
  • Axel Kohlmeyer (Sat Nov 08 2014 - 18:19:50 CST)
  • Joaquim Rui de Castro Rodrigues (Sat Nov 08 2014 - 18:24:19 CST)
  • Xinqiang Ding (Sat Nov 08 2014 - 16:46:28 CST)
• Cannot find "cionize plugin" in VMD
  • John Stone (Wed Jul 21 2010 - 16:22:05 CDT)
  • Parisa Akhski (Wed Jul 21 2010 - 13:31:39 CDT)
  • John Stone (Tue Jul 20 2010 - 14:09:37 CDT)
  • John Stone (Tue Jul 20 2010 - 12:42:15 CDT)
  • Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
  • John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
  • Parisa Akhski (Fri Jul 16 2010 - 14:26:59 CDT)
• cannot find PSF and PDB
  • John Stone (Mon Sep 16 2013 - 23:59:51 CDT)
  • Rejwan (Sun Sep 15 2013 - 13:04:14 CDT)
• cannot ionize coarse-grained system
  • John Stone (Fri May 03 2013 - 15:45:09 CDT)
  • Josh Vermaas (Wed May 01 2013 - 15:40:40 CDT)
  • Ф¸»¹ó (Wed May 01 2013 - 14:25:37 CDT)
• Cannot load file for SASA analysis
  • Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
• Cannot load Gromos96 trajectory file (attached)
  • Axel Kohlmeyer (Mon Oct 17 2005 - 19:37:14 CDT)
  • John Stone (Mon Oct 17 2005 - 17:11:32 CDT)
  • Stanley Lan (Mon Oct 17 2005 - 16:26:17 CDT)
• Cannot merge psf and pdb files using psfgen
  • Ern Ong (Wed Feb 13 2019 - 22:20:53 CST)
  • Vermaas, Joshua (Wed Feb 13 2019 - 09:55:21 CST)
  • Ern Ong (Wed Feb 13 2019 - 05:12:41 CST)
  • Ern Ong (Wed Feb 13 2019 - 03:52:42 CST)
• Cannot open parm7 file through tcl script, but can open via graphic interface
  • Fernando Amrein (Mon Mar 27 2023 - 19:15:54 CDT)
• cannot open vmd
  • Axel Kohlmeyer (Fri Jan 25 2013 - 02:28:15 CST)
  • ragesh c (Fri Jan 25 2013 - 00:22:50 CST)
• Cannot perform RMSD analysis
  • John Stone (Wed Apr 02 2008 - 23:53:41 CDT)
  • Maria Sanchez Farran (Wed Apr 02 2008 - 07:49:55 CDT)
• Cannot read MSMS data files
  • John Stone (Tue Jun 22 2010 - 11:37:48 CDT)
  • John Stone (Mon Jun 21 2010 - 16:00:36 CDT)
  • Jayne Wallace (Mon Jun 21 2010 - 09:12:07 CDT)
• Cannot read MSMS facet file
  • BIN ZHANG (Mon Feb 16 2009 - 17:05:31 CST)
  • John Stone (Mon Feb 16 2009 - 00:27:26 CST)
  • BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
• Cannot Remote Display on Ububtu
  • Christian Wohlschlager (Tue Sep 22 2015 - 00:54:34 CDT)
• Cannot Remote Display on Ubuntu
  • Christian Wohlschlager (Tue Sep 22 2015 - 02:30:12 CDT)
• Cannot run IED! :(
  • John Stone (Thu Aug 03 2006 - 11:30:01 CDT)
  • Peng Tao (Thu Aug 03 2006 - 11:23:03 CDT)
  • John Stone (Thu Aug 03 2006 - 10:40:15 CDT)
  • Axel Kohlmeyer (Thu Aug 03 2006 - 10:37:14 CDT)
  • Peng Tao (Thu Aug 03 2006 - 10:00:30 CDT)
  • Peng Tao (Thu Aug 03 2006 - 09:47:21 CDT)
  • Peng Tao (Thu Aug 03 2006 - 09:04:00 CDT)
  • John Stone (Wed Aug 02 2006 - 21:53:55 CDT)
  • Peng Tao (Wed Aug 02 2006 - 21:13:04 CDT)
• Cannot show the simulation box
  • John Stone (Thu Aug 31 2017 - 17:34:57 CDT)
  • lan hoa Trinh (Thu Aug 31 2017 - 17:51:12 CDT)
  • lan hoa Trinh (Thu Aug 31 2017 - 17:21:01 CDT)
• Cannot start CAVE display
  • John Stone (Fri Aug 16 2002 - 11:32:42 CDT)
  • Pawel Kedzierski (Thu Aug 15 2002 - 23:00:42 CDT)
  • John Stone (Tue Aug 13 2002 - 15:15:27 CDT)
  • Pawel Kedzierski (Tue Aug 13 2002 - 15:20:17 CDT)
• Cannot start VMD in background from a script
  • John Stone (Mon Jun 23 2014 - 09:51:14 CDT)
  • Jim (Sat Jun 21 2014 - 11:08:51 CDT)
• cannot visualize GROMACS trajectories in VMD 1.9.4 on MacOS Big Sur
  • Davide Marchi (Tue Mar 16 2021 - 13:33:02 CDT)
  • John Stone (Tue Mar 16 2021 - 11:48:14 CDT)
  • Chang, Christopher (Tue Mar 16 2021 - 10:54:00 CDT)
  • alberto (Tue Mar 16 2021 - 06:37:37 CDT)
  • Davide Marchi (Tue Mar 16 2021 - 05:48:35 CDT)
• Cannot write parm7 file with type parm7
  • Prathit Chatterjee (Thu Jul 14 2022 - 08:54:37 CDT)
• cant connect Novint Falcon with VMD
  • John Stone (Fri Aug 13 2010 - 15:18:58 CDT)
  • Axel Kohlmeyer (Fri Aug 13 2010 - 14:30:28 CDT)
  • John Stone (Fri Aug 13 2010 - 12:55:06 CDT)
  • Axel Kohlmeyer (Fri Aug 13 2010 - 00:03:51 CDT)
  • Shawn (Thu Aug 12 2010 - 15:25:26 CDT)
  • John Stone (Thu Aug 12 2010 - 15:00:17 CDT)
  • Shawn (Thu Aug 12 2010 - 14:48:31 CDT)
  • Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
  • Axel Kohlmeyer (Thu Aug 12 2010 - 14:37:14 CDT)
  • Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
  • Shawn (Thu Aug 12 2010 - 13:21:56 CDT)
• cant find output file from tachyon render.
  • Ajasja LjubetiÄ� (Thu Mar 27 2014 - 15:41:47 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 15:55:28 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Mar 27 2014 - 14:52:23 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 14:56:12 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 14:30:05 CDT)
  • Josh Vermaas (Thu Mar 27 2014 - 13:12:33 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 12:07:45 CDT)
  • Massimiliano Porrini (Thu Mar 27 2014 - 11:51:33 CDT)
  • Semeraro, B David (Thu Mar 27 2014 - 08:50:56 CDT)
• cant open .car file
  • Erik (Mon Dec 03 2012 - 21:28:30 CST)
  • John Stone (Sat Dec 01 2012 - 22:41:24 CST)
  • Erik (Fri Nov 30 2012 - 12:25:30 CST)
• Cant start IED
  • Axel Kohlmeyer (Tue Dec 01 2009 - 07:26:44 CST)
  • Thomas Steinbrecher (Tue Dec 01 2009 - 05:00:15 CST)
• Cant use NAMDplot to plot
  • Artur Duque Rossi (Sat Nov 24 2018 - 16:34:18 CST)
• capping or patching protein ends
  • Peter Freddolino (Thu Mar 03 2011 - 17:51:20 CST)
  • Tim Travers (Thu Mar 03 2011 - 15:13:33 CST)
  • Mark Cunningham (Thu Mar 03 2011 - 14:32:08 CST)
  • Tim Travers (Thu Mar 03 2011 - 11:39:11 CST)
  • Ashlynne Monroe (Thu Mar 03 2011 - 10:40:37 CST)
• Capture query data
  • Jérôme Hénin (Fri Dec 02 2016 - 06:52:20 CST)
  • Eric Smoll (Fri Dec 02 2016 - 06:20:52 CST)
• capturing box dimensions from amber coordinate files
  • John Stone (Wed Apr 06 2005 - 13:33:12 CDT)
  • jbaucom_at_unity.ncsu.edu (Wed Apr 06 2005 - 12:39:08 CDT)
• Carbon Nanotube Interaction with Protein Simulation NAMD VMD
  • Tim Lo (Thu Sep 18 2014 - 20:19:10 CDT)
  • Aryan Vahedi-Faridi (Thu Sep 18 2014 - 14:44:34 CDT)
• Card for VMD with OpenGL & Linux
  • John Stone (Wed Apr 11 2001 - 01:31:59 CDT)
  • Dominik Horinek (Mon Apr 09 2001 - 17:09:45 CDT)
  • John Stone (Mon Apr 09 2001 - 16:46:34 CDT)
  • Dominik Horinek (Mon Apr 09 2001 - 16:38:40 CDT)
• Cardiolipin residue names changed by vmd
  • Rose, Stuart Wallace (Tue Aug 05 2014 - 19:30:02 CDT)
• carnal output trajectory
  • Sanjeev B.S. (Wed Oct 30 2002 - 07:50:45 CST)
  • Stéphane Teletchéa (Wed Oct 30 2002 - 07:50:19 CST)
  • Vlad Cojocaru (Wed Oct 30 2002 - 07:25:36 CST)
  • Vlad Cojocaru (Fri Oct 25 2002 - 04:50:55 CDT)
  • Margaret Cheung (Thu Oct 24 2002 - 15:57:50 CDT)
  • Vlad Cojocaru (Thu Oct 24 2002 - 15:07:35 CDT)
• Cartesian coordinates to polar coordinates
  • Axel Kohlmeyer (Wed Aug 15 2012 - 01:50:57 CDT)
  • Ganesh Kamath (Tue Aug 14 2012 - 17:20:30 CDT)
• cartoon of alpha carbon trace
  • Knapp Bernhard (Fri Nov 14 2014 - 10:24:32 CST)
  • John Stone (Thu Nov 13 2014 - 11:31:45 CST)
  • Knapp Bernhard (Thu Nov 13 2014 - 05:39:06 CST)
  • John Stone (Wed Nov 12 2014 - 10:35:55 CST)
  • Knapp Bernhard (Wed Nov 12 2014 - 08:00:27 CST)
• cartoon problems (encore)
  • John Stone (Sat Feb 03 2007 - 15:39:17 CST)
  • christopher (Sat Feb 03 2007 - 15:29:56 CST)
• Cartoon represenation for non-standard residue
  • Simon Dürr (Tue Aug 02 2016 - 09:53:50 CDT)
  • Simon Dürr (Tue Aug 02 2016 - 07:01:01 CDT)
• cartoon representation
  • John Stone (Fri May 30 2003 - 15:46:30 CDT)
  • Tyler Luchko (Fri May 30 2003 - 15:21:40 CDT)
  • John Stone (Fri Nov 15 2002 - 09:58:43 CST)
  • Robert Campbell (Fri Nov 15 2002 - 09:58:02 CST)
  • John Stone (Thu Nov 14 2002 - 16:02:48 CST)
  • stefano ricagno (Wed Nov 13 2002 - 06:27:33 CST)
• Cartoon representation for large molecules
  • John Stone (Fri Jan 02 2004 - 13:29:32 CST)
  • Gadi Oron (Thu Jan 01 2004 - 03:52:04 CST)
  • Aurore Zyto (Wed Dec 31 2003 - 15:43:11 CST)
• Cartoon representation in VMD with amber netcd file
  • John Stone (Mon May 08 2023 - 00:12:26 CDT)
  • Hoang, Oanh Tu (Fri May 05 2023 - 05:41:15 CDT)
• cartoon representation of 1crn
  • BETTLER Emmanuel (Fri Apr 23 2004 - 11:25:46 CDT)
• cartoon selection
  • John Stone (Tue Mar 14 2006 - 00:27:38 CST)
  • Viswanadham Sridhara (Mon Mar 13 2006 - 13:02:53 CST)
• Cartoons and secondary structure prediction
  • Axel Kohlmeyer (Tue May 03 2011 - 07:05:39 CDT)
  • Francisco José Taberner Sanchis (Tue May 03 2011 - 05:51:24 CDT)
• Catching error info before it shuts down ...
  • John Stone (Wed Feb 23 2005 - 17:37:44 CST)
  • Dallas Warren (Wed Feb 23 2005 - 17:30:39 CST)
  • John Stone (Wed Feb 23 2005 - 16:53:48 CST)
  • Dallas Warren (Wed Feb 23 2005 - 16:49:33 CST)
  • John Stone (Wed Feb 23 2005 - 16:33:17 CST)
  • Dallas Warren (Wed Feb 23 2005 - 16:23:33 CST)
  • John Stone (Wed Feb 23 2005 - 11:19:30 CST)
  • Dallas Warren (Mon Feb 21 2005 - 16:49:50 CST)
  • John Stone (Mon Feb 21 2005 - 11:43:05 CST)
  • Dallas Warren (Mon Feb 21 2005 - 00:02:51 CST)
  • Dallas Warren (Sun Feb 20 2005 - 16:03:51 CST)
  • Brian Bennion (Fri Feb 18 2005 - 10:01:32 CST)
  • Axel Kohlmeyer (Fri Feb 18 2005 - 03:39:48 CST)
  • Dallas Warren (Thu Feb 17 2005 - 23:41:08 CST)
• catdcd
  • Henrik Hariman (Thu Oct 24 2019 - 22:34:12 CDT)
  • Axel Kohlmeyer (Wed Jun 22 2016 - 07:21:37 CDT)
  • Paul Schlesinger (Wed Jun 22 2016 - 06:11:00 CDT)
  • John Stone (Fri Oct 23 2009 - 13:44:52 CDT)
  • Eric H. Lee (Mon Oct 12 2009 - 10:05:09 CDT)
  • Axel Kohlmeyer (Mon Oct 12 2009 - 10:43:42 CDT)
  • Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
  • John Stone (Fri Aug 29 2008 - 01:45:45 CDT)
  • Peter Freddolino (Wed Aug 27 2008 - 22:04:10 CDT)
  • Robert Fenwick (Wed Aug 27 2008 - 12:16:14 CDT)
  • John Stone (Wed Aug 27 2008 - 11:58:58 CDT)
  • Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
  • Axel Kohlmeyer (Mon Apr 14 2008 - 12:08:34 CDT)
  • Richard Swenson (Mon Apr 14 2008 - 13:28:19 CDT)
  • Raul Araya (Mon Apr 14 2008 - 12:01:41 CDT)
  • J. Rui Rodrigues (Wed Jul 13 2005 - 10:14:57 CDT)
  • Francesco Iori (Wed Jul 13 2005 - 04:05:40 CDT)
• catdcd - writing DCD with box info from namdbin and xsc files?
  • Brian Radak (Thu Oct 08 2015 - 10:03:58 CDT)
• catdcd -first
  • Salvatore Mario Cosseddu (Wed Jul 24 2013 - 05:33:12 CDT)
  • R. Charbel MAROUN (Tue Jul 23 2013 - 09:30:01 CDT)
• catDCD 4.0 and xplor
  • John Stone (Tue May 30 2006 - 15:41:02 CDT)
  • Peter Jones (Mon May 29 2006 - 23:23:10 CDT)
• catdcd 5.1 not working from VMD terminal
  • Michail Palaiokostas Avramidis (Tue Jan 27 2015 - 09:20:46 CST)
• catdcd a vmd extension?
  • Axel Kohlmeyer (Tue Jul 23 2013 - 13:09:00 CDT)
  • R. Charbel MAROUN (Tue Jul 23 2013 - 12:09:30 CDT)
• catdcd and velocity dcd file
  • Axel Kohlmeyer (Fri Jul 01 2011 - 10:45:16 CDT)
  • arash azari (Fri Jul 01 2011 - 10:06:11 CDT)
• CatDCD Desmond Support
  • John Stone (Fri Oct 23 2009 - 13:44:15 CDT)
  • John Stone (Wed Oct 07 2009 - 13:24:00 CDT)
  • andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
• catdcd error
  • Ashar Malik (Sat Jun 15 2019 - 17:05:15 CDT)
  • Roshan Shrestha (Sat Jun 15 2019 - 04:02:46 CDT)
  • Dani (Wed Mar 16 2016 - 16:50:47 CDT)
  • Josh Vermaas (Fri Mar 04 2016 - 18:49:23 CST)
  • Chitrak Gupta (Fri Mar 04 2016 - 17:21:47 CST)
  • Daniela Rivas (Wed Mar 02 2016 - 12:11:07 CST)
• catdcd error opening reading index file
  • Francesco Pietra (Sat Jun 23 2018 - 04:11:57 CDT)
• catdcd in VMD
  • Axel Kohlmeyer (Sat Oct 24 2015 - 10:57:48 CDT)
  • JhonY. I. (Sat Oct 24 2015 - 10:26:53 CDT)
• catdcd in Windows
  • John Stone (Wed Sep 09 2009 - 13:38:54 CDT)
  • Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
• CatDCD on Windows
  • Ashar Malik (Mon Sep 22 2014 - 19:35:07 CDT)
  • Josh Vermaas (Mon Sep 22 2014 - 19:08:55 CDT)
  • Ashar Malik (Mon Sep 22 2014 - 18:07:48 CDT)
• catdcd plugin for Windows users
  • Ashar Malik (Tue Jan 16 2018 - 01:58:45 CST)
  • Ern Ong (Tue Jan 16 2018 - 00:51:57 CST)
• CatDCD Question
  • Saladino, Alex (Tue Mar 04 2003 - 11:51:10 CST)
• CatDCD refuses to work (mac)
  • Heather Boltz (Mon Jun 13 2016 - 20:13:32 CDT)
  • Heather Boltz (Sun Jun 12 2016 - 07:42:29 CDT)
  • Strahs, Dr. Daniel Bernard (Fri Jun 10 2016 - 23:20:51 CDT)
  • Heather Boltz (Fri Jun 10 2016 - 22:05:39 CDT)
• catdcd usage with Desmond trajectory
  • Irene Newhouse (Wed Aug 25 2010 - 15:33:25 CDT)
  • John Stone (Tue Aug 24 2010 - 16:44:25 CDT)
  • Irene Newhouse (Thu Aug 19 2010 - 22:26:26 CDT)
  • John Stone (Thu Aug 19 2010 - 20:32:23 CDT)
  • Irene Newhouse (Thu Aug 19 2010 - 16:19:10 CDT)
• catdcd vs readdcd.h error checking
  • Brian Bennion (Sat Aug 20 2005 - 11:22:16 CDT)
  • Justin Gullingsrud (Fri Aug 19 2005 - 18:56:52 CDT)
  • Brian Bennion (Fri Aug 19 2005 - 11:53:55 CDT)
• CatDCD windows binaries
  • Axel Kohlmeyer (Fri Jul 19 2013 - 04:56:00 CDT)
• CatDcd Windows Version
  • NAMITA BHADRA (Wed Aug 17 2011 - 23:52:28 CDT)
• catDCD- convert DCD format
  • John Stone (Wed Aug 13 2008 - 10:58:21 CDT)
  • Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
• catdcd.LINUX
  • John Stone (Thu Feb 16 2006 - 14:17:03 CST)
  • John Stone (Thu Feb 16 2006 - 13:32:27 CST)
  • lily jin (Thu Feb 16 2006 - 13:24:16 CST)
• Catdcd?
  • Anirban Ghosh (Mon Oct 20 2008 - 06:31:25 CDT)
  • bo liu (Fri Oct 17 2008 - 00:01:59 CDT)
  • Axel Kohlmeyer (Thu Oct 16 2008 - 13:23:14 CDT)
  • Christopher Gillespie (Thu Oct 16 2008 - 12:25:42 CDT)
  • Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
• cave
  • Ahmed Nawar (Tue Nov 27 2007 - 01:00:42 CST)
  • John Stone (Mon Nov 26 2007 - 11:44:33 CST)
  • Ahmed Nawar (Mon Nov 26 2007 - 06:12:41 CST)
  • Axel Kohlmeyer (Mon Nov 26 2007 - 04:28:18 CST)
  • Ahmed Nawar (Mon Nov 26 2007 - 00:54:23 CST)
  • Axel Kohlmeyer (Sun Nov 25 2007 - 12:58:47 CST)
  • John Stone (Sun Nov 25 2007 - 12:54:56 CST)
  • Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
  • John Stone (Thu Nov 22 2007 - 10:21:30 CST)
  • Ahmed Nawar (Thu Nov 22 2007 - 06:09:24 CST)
  • John Stone (Wed Sep 07 2005 - 15:47:10 CDT)
  • Hai-Jun Su (Wed Sep 07 2005 - 15:35:10 CDT)
  • Hai-Jun Su (Wed Sep 07 2005 - 10:30:05 CDT)
  • Dan Strahs (Wed Sep 07 2005 - 08:59:22 CDT)
  • John Stone (Tue Sep 06 2005 - 23:32:18 CDT)
  • Hai-Jun Su (Tue Sep 06 2005 - 23:20:07 CDT)
• CAVE & Vmd
  • Christian Wohlschlager (Fri Jul 27 2007 - 01:45:45 CDT)
  • John Stone (Thu Jul 26 2007 - 16:06:00 CDT)
  • Christian Wohlschlager (Wed Jul 25 2007 - 08:21:27 CDT)
  • John Stone (Tue Jul 17 2007 - 11:46:13 CDT)
  • Christian Wohlschlager (Fri Jul 06 2007 - 02:06:54 CDT)
• CAVE and Flystick control
  • John Stone (Fri May 27 2011 - 14:41:03 CDT)
  • John Stone (Wed May 04 2011 - 15:15:20 CDT)
  • David Joiner (Wed May 04 2011 - 14:52:34 CDT)
• Cave and usr keys defined in tcl
  • John Stone (Wed Feb 28 2007 - 00:00:22 CST)
  • Christian Wohlschlager (Tue Feb 27 2007 - 05:46:38 CST)
• CAVE on OS X
  • John Stone (Tue Dec 14 2004 - 09:44:54 CST)
  • Ebrahim Mayat (Mon Dec 13 2004 - 02:57:27 CST)
• CAVE Question
  • John Stone (Mon Dec 11 2006 - 10:21:12 CST)
  • Christian Wohlschlager (Mon Dec 11 2006 - 00:28:12 CST)
  • John Stone (Fri Dec 01 2006 - 10:53:06 CST)
  • Christian Wohlschlager (Thu Nov 30 2006 - 08:22:46 CST)
  • John Stone (Wed Nov 29 2006 - 14:25:37 CST)
  • Christian Wohlschlager (Tue Nov 28 2006 - 08:16:48 CST)
  • Axel Kohlmeyer (Mon Nov 27 2006 - 18:47:22 CST)
  • John Stone (Mon Nov 27 2006 - 14:50:57 CST)
  • Christian Wohlschlager (Mon Nov 27 2006 - 02:39:04 CST)
• CAVE Sensor Question
  • John Stone (Tue Dec 19 2006 - 01:10:20 CST)
  • Christian Wohlschlager (Mon Dec 18 2006 - 01:28:53 CST)
• cavetracker
  • John Stone (Fri Jan 18 2002 - 01:32:48 CST)
  • Derek R. Ploor (Wed Jan 16 2002 - 15:00:31 CST)
• cavity/pocket representation
  • Luis Guillermo Cota Preciado (Thu May 04 2006 - 12:48:53 CDT)
  • Ran Friedman (Thu May 04 2006 - 03:17:24 CDT)
  • John Stone (Tue May 02 2006 - 13:05:12 CDT)
  • Wei Fu (Linda) (Tue May 02 2006 - 13:50:38 CDT)
• CCL: show ruler in VMD
  • John Stone (Fri Jun 01 2007 - 14:11:07 CDT)
• CCL:md rookie update
  • Konrad Hinsen (Thu Jan 08 1998 - 06:50:36 CST)
• CCL:md rookie update (fwd)
  • root (Thu Jan 08 1998 - 12:44:37 CST)
  • root (Thu Jan 08 1998 - 12:41:23 CST)
  • root (Thu Jan 08 1998 - 12:41:39 CST)
• CCL:NAMD failure on Berendsen pressure scheme
  • Ioana Cozmuta (Thu Jul 31 2003 - 13:03:24 CDT)
  • Ioana Cozmuta (Wed Jul 30 2003 - 11:51:49 CDT)
• CCL:program for viewing MD
  • Barry Isralewitz (Mon Oct 23 2000 - 11:55:02 CDT)
• ccp4 in vmd
  • John Stone (Wed Dec 02 2009 - 22:41:17 CST)
  • pebblepeddle_at_gmail.com (Wed Dec 02 2009 - 21:55:58 CST)
• CD spectra
  • Prof. Eddie (Fri Feb 19 2016 - 10:34:02 CST)
• CDROM/Windows/Linux
  • Surjit Dixit (Fri Sep 20 2002 - 07:29:47 CDT)
  • Stéphane Teletchéa (Fri Sep 20 2002 - 04:24:12 CDT)
  • John Stone (Thu Sep 19 2002 - 15:16:54 CDT)
  • Surjit Dixit (Thu Sep 19 2002 - 14:35:46 CDT)
• CellPack
  • McGuire, Kelly (Fri May 04 2018 - 11:06:12 CDT)
  • John Stone (Fri May 04 2018 - 11:02:02 CDT)
  • Ajasja LjubetiÄ� (Fri May 04 2018 - 03:17:20 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 20:41:58 CDT)
  • John Stone (Thu May 03 2018 - 20:35:46 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 20:11:39 CDT)
  • Vermaas, Joshua (Thu May 03 2018 - 19:57:08 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 18:53:18 CDT)
  • McGuire, Kelly (Thu May 03 2018 - 11:20:26 CDT)
  • John Stone (Thu May 03 2018 - 10:22:22 CDT)
  • McGuire, Kelly (Wed May 02 2018 - 23:03:31 CDT)
• Center a trajectory
  • Ajasja LjubetiÄ� (Tue Jul 16 2013 - 11:27:16 CDT)
  • Cathy Kelly (Tue Jul 16 2013 - 11:15:03 CDT)
  • Ajasja LjubetiÄ� (Tue Jul 16 2013 - 10:57:40 CDT)
  • Andrei Tudor (Tue Jul 16 2013 - 09:18:15 CDT)
• Center camera rotation on a molid
  • TUBIANA Thibault CNRS (Thu Mar 02 2017 - 04:00:03 CST)
• center command
  • Ioana Cozmuta (Fri May 23 2003 - 17:02:51 CDT)
• center of mass
  • John Stone (Tue Jul 09 2013 - 13:09:43 CDT)
  • Grace Brannigan (Fri Jul 05 2013 - 14:26:47 CDT)
  • Jorgen Simonsen (Fri Jul 05 2013 - 13:59:18 CDT)
  • Josh Vermaas (Fri Jul 05 2013 - 13:37:32 CDT)
  • Ajasja LjubetiÄ� (Fri Jul 05 2013 - 13:18:19 CDT)
  • Jérôme Hénin (Fri Jul 05 2013 - 12:17:28 CDT)
  • Jorgen Simonsen (Fri Jul 05 2013 - 11:25:55 CDT)
  • Axel Kohlmeyer (Mon Jan 12 2009 - 14:37:05 CST)
  • Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
• center of mass 4 rdf VMD
  • alberto (Thu Mar 07 2019 - 09:42:48 CST)
• center of mass position
  • John Stone (Tue Aug 24 2004 - 10:03:40 CDT)
  • Andre Farias de Moura (Tue Aug 24 2004 - 07:07:24 CDT)
• Center of Mass RMSD in a trajectory
  • Felipe Merino (Mon Apr 03 2017 - 03:51:46 CDT)
  • Daniela Rivas (Mon Apr 03 2017 - 03:59:30 CDT)
  • Daniela Rivas (Mon Apr 03 2017 - 02:58:54 CDT)
• center of unit cell
  • Bhargava (Thu Apr 08 2010 - 11:10:51 CDT)
  • Axel Kohlmeyer (Thu Apr 08 2010 - 11:13:45 CDT)
  • Yinglong Miao (Thu Apr 08 2010 - 10:10:17 CDT)
• center scaling and rotation
  • John Stone (Fri Jun 22 2007 - 17:25:01 CDT)
  • Tim Meyer (Thu Jun 21 2007 - 09:35:40 CDT)
• center selection problem
  • Justin Gullingsrud (Sat Apr 10 2004 - 13:48:19 CDT)
  • Mike McCallum (Sat Apr 10 2004 - 00:17:26 CDT)
• Centering an atom over the length of a trajectory
  • Vermaas, Joshua (Tue Feb 26 2019 - 16:33:31 CST)
  • Bassam Haddad (Tue Feb 26 2019 - 16:25:15 CST)
  • Bassam Haddad (Tue Feb 26 2019 - 16:30:29 CST)
  • Nick Palmer (Tue Feb 26 2019 - 15:11:55 CST)
• Centering GPCR onto Lipid Bilayer
  • Akshay Patny (Tue Sep 19 2006 - 16:19:59 CDT)
  • Ting Wang (Tue Sep 19 2006 - 13:28:40 CDT)
  • Akshay Patny (Mon Sep 18 2006 - 14:28:35 CDT)
• Centering of the view on one atom
  • Axel Kohlmeyer (Wed Mar 31 2004 - 14:12:51 CST)
  • CHAUMONT Alain (Wed Mar 31 2004 - 09:42:09 CST)
• centering problem in salvation box
  • John Stone (Tue Jan 14 2014 - 09:45:43 CST)
  • Ramin Ekhteiari (Fri Jan 10 2014 - 12:01:22 CST)
• centering problem in trajectory tool
  • Markus K. Dahlgren (Mon Oct 17 2011 - 18:46:35 CDT)
  • Zumot, Elia Nabil (Mon Oct 17 2011 - 17:58:49 CDT)
  • Markus K. Dahlgren (Mon Oct 17 2011 - 17:46:26 CDT)
  • Zumot, Elia Nabil (Mon Oct 10 2011 - 15:34:54 CDT)
  • Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
  • Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
  • Markus K. Dahlgren (Mon Oct 10 2011 - 08:59:11 CDT)
• centering seection on screen
  • Lubos Vrbka (Thu Apr 17 2003 - 10:38:25 CDT)
  • B. Bennion (Thu Apr 17 2003 - 09:50:32 CDT)
  • Lubos Vrbka (Thu Apr 17 2003 - 05:28:46 CDT)
• centering selection on screen
  • John Stone (Thu Apr 17 2003 - 12:38:35 CDT)
• centering the molecule
  • John Stone (Mon Oct 03 2005 - 16:32:10 CDT)
  • Jeffrey Tseng (Sun Oct 02 2005 - 17:53:00 CDT)
• Centering water molecules
  • Mihaela Drenscko (Wed Nov 27 2013 - 06:56:17 CST)
  • John Stone (Tue Nov 26 2013 - 19:04:21 CST)
  • Mihaela Drenscko (Tue Nov 26 2013 - 18:26:51 CST)
• CentOS 6.4 crashed right after starting vmd
  • John Stone (Thu Apr 16 2015 - 11:33:02 CDT)
  • ASHISH BIHANI (Thu Apr 16 2015 - 00:57:51 CDT)
• Centre of gravity for movies
  • John Stone (Tue Sep 17 2002 - 11:25:07 CDT)
  • Mark Hilge (Fri Sep 13 2002 - 12:21:14 CDT)
• Certain combinations of X-server and X-client do not allow VMD to start
  • Jiri Polach (Tue Sep 17 2013 - 08:02:23 CDT)
  • John Stone (Mon Sep 16 2013 - 23:56:11 CDT)
  • Clarinet (Mon Sep 16 2013 - 09:40:08 CDT)
• CG bead definition
  • Anton Arkhipov (Mon Aug 31 2009 - 23:24:05 CDT)
  • Anton Arkhipov (Mon Nov 24 2008 - 18:36:23 CST)
  • BIN ZHANG (Mon Nov 24 2008 - 18:24:35 CST)
  • Anton Arkhipov (Mon Nov 24 2008 - 16:43:28 CST)
  • BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
• CG Builder
  • Axel Kohlmeyer (Sun Jan 30 2011 - 08:54:59 CST)
  • mohamad rahimi (Sun Jan 30 2011 - 06:14:03 CST)
  • Axel Kohlmeyer (Sun Jan 30 2011 - 05:53:54 CST)
  • mohamad rahimi (Sun Jan 30 2011 - 03:31:23 CST)
  • Roman Petrenko (Mon Nov 09 2009 - 15:01:26 CST)
  • Francesco Pietra (Mon Nov 09 2009 - 14:06:44 CST)
• CG builder for martini force field
  • Giacomo Fiorin (Fri May 26 2017 - 01:07:00 CDT)
  • Karteek Kumar (Thu May 25 2017 - 22:31:46 CDT)
  • Peter Freddolino (Thu May 25 2017 - 22:35:38 CDT)
  • Peter Freddolino (Thu May 25 2017 - 22:10:03 CDT)
  • Peter Freddolino (Sat May 13 2017 - 21:36:21 CDT)
  • Peter Freddolino (Fri May 12 2017 - 15:33:54 CDT)
  • Karteek Kumar (Fri May 12 2017 - 10:37:45 CDT)
• CG builder in script
  • János Szövérfi (Wed Jun 14 2017 - 07:16:03 CDT)
  • Axel Kohlmeyer (Wed Jun 14 2017 - 05:53:26 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 05:50:24 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 05:45:44 CDT)
  • Axel Kohlmeyer (Wed Jun 14 2017 - 05:31:14 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 04:58:06 CDT)
  • Fotis Baltoumas (Wed Jun 14 2017 - 04:50:49 CDT)
  • Ajasja LjubetiÄ� (Wed Jun 14 2017 - 04:42:40 CDT)
  • János Szövérfi (Wed Jun 14 2017 - 03:26:06 CDT)
• CG definition of POPS
  • Steven Neumann (Sun Aug 03 2014 - 23:31:23 CDT)
• cg ionization
  • Sibel Cakan (Sun Sep 19 2010 - 15:28:14 CDT)
  • Sibel Cakan (Sun Sep 19 2010 - 15:16:06 CDT)
• CG lipid bilayer vmd 1.8.7
  • Anton Arkhipov (Mon Dec 07 2009 - 10:15:53 CST)
  • Francesco Pietra (Sun Dec 06 2009 - 13:24:06 CST)
  • Anton Arkhipov (Sun Dec 06 2009 - 00:35:46 CST)
  • Peter Freddolino (Thu Dec 03 2009 - 05:31:58 CST)
  • Francesco Pietra (Thu Dec 03 2009 - 02:57:24 CST)
  • BIN ZHANG (Wed Dec 02 2009 - 15:17:05 CST)
  • BIN ZHANG (Wed Dec 02 2009 - 14:03:58 CST)
  • Francesco Pietra (Wed Dec 02 2009 - 12:13:53 CST)
• CG Map Tool Syntax Error
  • Anton Arkhipov (Wed Nov 05 2008 - 16:16:59 CST)
  • Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
• CG Martini File for Cholesterol
  • Fotis Baltoumas (Mon May 20 2019 - 11:07:44 CDT)
  • Alexander Adams (Mon May 20 2019 - 10:45:50 CDT)
• CG- CNT
  • Axel Kohlmeyer (Sat Jan 12 2013 - 10:02:04 CST)
  • hamid mosaddeghi (Sat Jan 12 2013 - 06:05:02 CST)
• cg_bonds.tcl
  • mohammad agha (Sat May 19 2012 - 15:56:00 CDT)
  • Ajasja LjubetiÄ� (Sat May 19 2012 - 15:07:20 CDT)
  • mohammad agha (Sat May 19 2012 - 00:32:37 CDT)
• cg_ionize
  • Peter Freddolino (Mon Sep 20 2010 - 20:34:08 CDT)
  • Sibel Cakan (Sun Sep 19 2010 - 16:37:15 CDT)
• CG_MD temperature
  • BIN ZHANG (Thu Feb 03 2011 - 01:30:15 CST)
  • Sibel Cakan (Wed Feb 02 2011 - 17:56:12 CST)
• cgenff atom type issue
  • Stefano Guglielmo (Sun May 24 2020 - 05:51:55 CDT)
  • Josh Vermaas (Fri May 22 2020 - 13:16:15 CDT)
  • Krishna Vkm (Fri May 22 2020 - 12:40:29 CDT)
  • Stefano Guglielmo (Fri May 22 2020 - 11:50:36 CDT)
• CGenFF atom types
  • Axel Kohlmeyer (Sun Mar 14 2010 - 21:19:30 CDT)
  • Ziemys, Arturas (Sun Mar 14 2010 - 19:44:53 CDT)
• cgtools
  • Gurunath Katagi (Wed Jan 01 2014 - 04:08:07 CST)
• CGTools error: atom select: cannot parse selection text...
  • Kirby Vandivort (Tue Sep 15 2009 - 11:32:35 CDT)
  • Kirby Vandivort (Mon Sep 14 2009 - 14:16:24 CDT)
  • wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
• CGTools Plugin
  • Peter Freddolino (Sat Jan 20 2007 - 11:17:00 CST)
  • Ugur Akgun (Fri Jan 19 2007 - 13:59:31 CST)
• CGTools with pdb and top files
  • Kirby Vandivort (Tue Apr 02 2013 - 16:36:47 CDT)
  • Dong Luo (Tue Apr 02 2013 - 11:29:46 CDT)
  • WuChaofu (Mon Apr 01 2013 - 23:59:51 CDT)
  • WuChaofu (Mon Apr 01 2013 - 17:52:08 CDT)
  • Dong Luo (Mon Apr 01 2013 - 10:39:56 CDT)
  • WuChaofu (Mon Apr 01 2013 - 02:55:13 CDT)
• chain fails
  • John Stone (Wed Mar 08 2006 - 16:24:21 CST)
  • Yu Chen (Fri Feb 10 2006 - 14:52:43 CST)
• chain identifier change in the pdb files generated by the "solvate" and "Add Ions" plugin
  • sunyeping (Mon Oct 10 2016 - 21:04:45 CDT)
  • Stefan Doerr (Tue Oct 04 2016 - 09:25:39 CDT)
  • John Stone (Mon Oct 03 2016 - 16:10:19 CDT)
  • sunyeping (Mon Sep 26 2016 - 21:46:54 CDT)
• chain seprating and jumping because of periodic bound
  • sunyeping (Sat Feb 11 2017 - 13:45:42 CST)
• Chains x, y, and z cannot be selected
  • Charles McAnany (Wed Aug 31 2022 - 14:27:29 CDT)
• Change atom color dynamically.
  • Axel Kohlmeyer (Wed Jun 05 2013 - 03:14:02 CDT)
  • amit kunte (Wed Jun 05 2013 - 02:12:49 CDT)
• Change Atom serial Atom
  • Georcki Ropon (Thu Nov 18 2021 - 11:07:13 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:57:10 CST)
  • Vermaas, Josh (Wed Nov 17 2021 - 20:50:42 CST)
  • Axel Kohlmeyer (Wed Nov 17 2021 - 20:52:39 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:42:25 CST)
  • Vermaas, Josh (Wed Nov 17 2021 - 20:34:02 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:18:09 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 20:22:44 CST)
  • Axel Kohlmeyer (Wed Nov 17 2021 - 20:19:32 CST)
  • Axel Kohlmeyer (Wed Nov 17 2021 - 20:14:48 CST)
  • Georcki Ropon (Wed Nov 17 2021 - 19:04:32 CST)
• Change atom types in topotools
  • Giacomo Fiorin (Thu Sep 14 2017 - 09:05:38 CDT)
  • Rajesh (Thu Sep 14 2017 - 08:07:12 CDT)
• change axes name
  • John Stone (Tue Feb 19 2008 - 10:59:23 CST)
  • massimo camarda (Mon Feb 18 2008 - 11:57:35 CST)
• Change bond per atom limit of VMD
  • Dhritiman Talukdar (Mon Jan 12 2015 - 13:40:49 CST)
  • John Stone (Mon Jan 12 2015 - 10:40:06 CST)
  • Dhritiman Talukdar (Wed Jan 07 2015 - 14:53:49 CST)
  • Dhritiman Talukdar (Wed Jan 07 2015 - 03:28:37 CST)
  • Axel Kohlmeyer (Wed Jan 07 2015 - 02:44:03 CST)
  • Dhritiman Talukdar (Wed Jan 07 2015 - 01:21:31 CST)
  • Axel Kohlmeyer (Tue Jan 06 2015 - 23:24:11 CST)
  • Dhritiman Talukdar (Tue Jan 06 2015 - 22:41:41 CST)
  • Axel Kohlmeyer (Tue Jan 06 2015 - 14:23:56 CST)
  • Josh Vermaas (Tue Jan 06 2015 - 13:32:09 CST)
  • Dhritiman Talukdar (Tue Jan 06 2015 - 12:15:21 CST)
  • Axel Kohlmeyer (Tue Jan 06 2015 - 10:24:19 CST)
  • John Stone (Tue Jan 06 2015 - 10:23:47 CST)
  • Dhritiman Talukdar (Tue Jan 06 2015 - 09:36:52 CST)
• Change browsing directory in mac
  • John Stone (Mon Nov 28 2016 - 00:24:53 CST)
  • Estefania Gonzalez Solveyra (Fri Nov 18 2016 - 11:31:28 CST)
• change color from script
  • John Stone (Fri Oct 15 2004 - 10:44:47 CDT)
  • S.G.Falkovich (Wed Oct 13 2004 - 04:27:06 CDT)
• Change color of drawn object
  • Axel Kohlmeyer (Sun Oct 11 2015 - 09:53:37 CDT)
  • Ebert Maximilian (Sat Oct 10 2015 - 20:34:33 CDT)
  • Ebert Maximilian (Thu Oct 08 2015 - 13:48:07 CDT)
  • John Stone (Thu Oct 08 2015 - 14:11:16 CDT)
• Change Color Scale
  • Joshua D. Moore (Wed Dec 21 2011 - 15:49:50 CST)
  • Axel Kohlmeyer (Wed Dec 21 2011 - 15:04:07 CST)
  • John Stone (Wed Dec 21 2011 - 15:09:09 CST)
  • Joshua D. Moore (Wed Dec 21 2011 - 13:57:10 CST)
• Change color scale data range
  • Vermaas, Joshua (Fri Nov 08 2019 - 10:51:39 CST)
  • William Glass (Fri Nov 08 2019 - 04:32:03 CST)
• change color sequence used in label graphs?
  • Mariano Spivak (Mon Mar 29 2021 - 16:52:11 CDT)
  • Carlos Simmerling (Mon Mar 29 2021 - 14:00:55 CDT)
• Change coordinates
  • Axel Kohlmeyer (Thu Nov 24 2011 - 14:42:53 CST)
  • Andrés Morales (Thu Nov 24 2011 - 10:38:15 CST)
  • sajad falsafi (Thu Nov 24 2011 - 06:51:44 CST)
  • Andrés Morales (Thu Nov 24 2011 - 02:14:02 CST)
• change cylinder surface properties
  • Axel Kohlmeyer (Mon Feb 16 2009 - 18:29:11 CST)
  • Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
• change default bond cutoff distance
  • John Stone (Wed Mar 15 2006 - 18:35:02 CST)
  • Weiqiang Wang (Tue Mar 14 2006 - 02:11:22 CST)
  • John Stone (Tue Mar 14 2006 - 00:18:33 CST)
  • Weiqiang Wang (Tue Mar 07 2006 - 15:12:42 CST)
  • John Stone (Tue Mar 07 2006 - 10:55:23 CST)
  • Weiqiang Wang (Tue Mar 07 2006 - 03:25:53 CST)
• change default drawing and coloring method
  • Axel Kohlmeyer (Thu May 25 2006 - 05:06:12 CDT)
  • Habib.Alehossein_at_csiro.au (Wed May 24 2006 - 22:52:36 CDT)
  • Jian Zou (Wed May 24 2006 - 20:44:06 CDT)
  • John Stone (Wed May 24 2006 - 16:28:51 CDT)
  • Jian Zou (Tue May 23 2006 - 22:16:49 CDT)
  • John Stone (Tue May 23 2006 - 13:19:13 CDT)
  • John Stone (Tue May 23 2006 - 13:05:51 CDT)
  • Osmany guirola Cruz (Tue May 23 2006 - 10:10:47 CDT)
  • Ch. Fufezan (Tue May 23 2006 - 09:26:52 CDT)
  • Axel Kohlmeyer (Mon May 22 2006 - 23:29:51 CDT)
  • Christian Fufezan (Mon May 22 2006 - 19:08:17 CDT)
• Change Font on VMD Main Window -- Linux
  • John Stone (Mon Jan 11 2021 - 16:36:35 CST)
  • Rudy Richardson (Thu Jan 07 2021 - 14:42:13 CST)
• Change in color of residue
  • Ramin Ekhteiari (Fri Jun 28 2013 - 13:09:32 CDT)
  • rama david (Fri Jun 28 2013 - 09:59:29 CDT)
• Change in reaction coordinate value after doing solvation from that of the crystal structure
  • Vermaas, Joshua (Thu Apr 12 2018 - 14:55:26 CDT)
  • Sheena Singh (Thu Apr 12 2018 - 10:07:09 CDT)
• Change Label Font
  • John Stone (Mon Jul 08 2019 - 00:54:13 CDT)
  • Gajanan Kanagalingam (Sun Jun 30 2019 - 04:14:13 CDT)
• change location of temporay file storage (Win2k
  • Dieter Blaas (Tue May 11 2004 - 08:20:31 CDT)
• change location of temporay file storage (Win2k)
  • dieter blaas (Mon May 10 2004 - 23:59:18 CDT)
  • John Stone (Mon Mar 15 2004 - 13:53:02 CST)
  • dieter blaas (Thu Mar 11 2004 - 23:55:32 CST)
• Change of colour for bond distance
  • Suchetana Gupta (Fri Sep 13 2019 - 09:07:05 CDT)
  • Vermaas, Joshua (Fri Sep 13 2019 - 08:34:51 CDT)
  • Suchetana Gupta (Fri Sep 13 2019 - 00:26:30 CDT)
• change of font
  • Salvatore Mario Cosseddu (Fri Feb 10 2012 - 09:12:46 CST)
  • John Stone (Fri Feb 10 2012 - 09:04:57 CST)
  • lecan (Thu Feb 09 2012 - 20:01:17 CST)
• Change only the CA coordinates in a pdb file via tcl
  • Mert Gür (Mon Jun 14 2010 - 16:24:44 CDT)
  • genie lfs (Mon Jun 14 2010 - 15:45:07 CDT)
  • John Stone (Mon Jun 14 2010 - 15:12:33 CDT)
  • Mert Gür (Mon Jun 14 2010 - 14:26:14 CDT)
• Change Path to Povray
  • John Stone (Thu Aug 11 2011 - 10:30:15 CDT)
  • Moritz Münsterberg (Thu Aug 11 2011 - 03:34:59 CDT)
• Change properties of representations - batch mode
  • John Stone (Fri Nov 17 2006 - 11:13:05 CST)
  • Axel Kohlmeyer (Fri Nov 17 2006 - 10:47:02 CST)
  • Peter Freddolino (Fri Nov 17 2006 - 10:38:07 CST)
  • nunolf_at_ci.uc.pt (Fri Nov 17 2006 - 09:48:18 CST)
• Change representation default from lines to points
  • Axel Kohlmeyer (Thu Jun 02 2005 - 10:08:24 CDT)
  • Prasad S Garimella (Thu Jun 02 2005 - 09:56:16 CDT)
• Change requested in lammps plugin for VMD
  • Axel Kohlmeyer (Fri May 15 2009 - 12:32:48 CDT)
  • Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
• change residue colors?
  • John Stone (Mon Sep 13 2010 - 12:42:33 CDT)
  • Fatemesadat Emami (Fri Sep 10 2010 - 14:37:23 CDT)
• change residue name and write a trajectory file
  • Axel Kohlmeyer (Thu Apr 10 2008 - 18:19:12 CDT)
  • L. Michel Espinoza-Fonseca (Thu Apr 10 2008 - 17:02:13 CDT)
• change the radius of atoms
  • Joaquim Rui Rodrigues (Thu Oct 23 2008 - 05:40:59 CDT)
  • Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
• change the representation of certain atoms which pass a geometric criterion during a movie
  • Axel Kohlmeyer (Tue Sep 18 2007 - 08:34:29 CDT)
  • maria goranovic (Tue Sep 18 2007 - 08:21:45 CDT)
• Change Tkconsole brackground
  • John Stone (Mon Oct 18 2021 - 12:02:21 CDT)
  • Georcki Ropon (Sun Oct 10 2021 - 14:19:12 CDT)
• Change transparency along a trajectory
  • Axel Kohlmeyer (Mon Dec 09 2013 - 08:13:35 CST)
  • Gaetano Calabró (Mon Dec 09 2013 - 05:55:12 CST)
• Change VDW scaling in CPK drawing method
  • Norman Geist (Fri Feb 13 2015 - 01:47:34 CST)
  • Josh Vermaas (Thu Feb 12 2015 - 11:54:22 CST)
  • John Stone (Thu Feb 12 2015 - 11:38:18 CST)
  • Damien Serres (Thu Feb 12 2015 - 11:03:52 CST)
• change_tkconsole_color_of_background_and_foreground
  • Ashar Malik (Sun Dec 04 2016 - 10:53:47 CST)
  • Aman Jindal (Sun Dec 04 2016 - 06:26:33 CST)
  • Aman Jindal (Sun Dec 04 2016 - 07:15:31 CST)
  • Panagiotis Lagarias (Sun Dec 04 2016 - 04:48:07 CST)
• Changing a structure of macromolecule with VMD
  • Axel Kohlmeyer (Sun Feb 24 2008 - 11:36:04 CST)
  • Peter Freddolino (Sun Feb 24 2008 - 09:27:34 CST)
  • fouchni_at_uni-osnabrueck.de (Sun Feb 24 2008 - 08:38:44 CST)
• Changing alphanumeric atom naming scheme to numeric
  • Peter C. Lai (Wed Jun 06 2012 - 14:21:46 CDT)
  • John Stone (Wed Jun 06 2012 - 12:07:11 CDT)
  • Bryan Roessler (Wed Jun 06 2012 - 09:47:44 CDT)
  • John Stone (Tue Jun 05 2012 - 13:05:38 CDT)
  • Bryan Roessler (Tue Jun 05 2012 - 12:07:15 CDT)
• Changing atom colouring by a non-standard property
  • Thomas Aldershof (Tue Jul 26 2016 - 23:10:44 CDT)
  • John Stone (Thu Jul 21 2016 - 16:54:54 CDT)
  • Thomas Aldershof (Wed Jul 20 2016 - 01:36:21 CDT)
• changing atom number in animation
  • John Stone (Thu May 15 2003 - 16:21:24 CDT)
  • yifat b (Thu May 15 2003 - 05:01:06 CDT)
  • John Stone (Mon May 12 2003 - 11:07:32 CDT)
  • yifat b (Mon May 12 2003 - 04:50:17 CDT)
• Changing atom order in DCD structures?
  • Chang, Christopher (Mon Jul 25 2005 - 15:42:45 CDT)
• Changing atoms diameter
  • Axel Kohlmeyer (Fri Apr 22 2016 - 05:18:28 CDT)
  • ehsan shahini (Fri Apr 22 2016 - 04:26:46 CDT)
• Changing Beta values for each frame of a trajectory..
  • Arun Krishnan (Wed Jun 20 2007 - 23:39:21 CDT)
  • John Stone (Wed Jun 20 2007 - 22:50:19 CDT)
  • Arun Krishnan (Wed Jun 20 2007 - 22:08:17 CDT)
• changing bond color
  • Ramya Gamini (Tue Jan 06 2009 - 12:27:22 CST)
  • Axel Kohlmeyer (Tue Jan 06 2009 - 12:30:19 CST)
  • Peter Freddolino (Tue Jan 06 2009 - 11:50:11 CST)
  • jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
• Changing bond numbers
  • Axel Kohlmeyer (Thu Mar 20 2014 - 11:58:09 CDT)
  • T K (Thu Mar 20 2014 - 10:05:53 CDT)
  • Axel Kohlmeyer (Sun Mar 09 2014 - 03:37:28 CDT)
  • T K (Sun Mar 09 2014 - 00:52:22 CST)
• changing certain dihedral angles while keeping rest of molecule fixed
  • Peter Freddolino (Wed Jun 06 2007 - 10:41:54 CDT)
  • Himanshu Khandelia (Wed Jun 06 2007 - 10:02:54 CDT)
  • Peter Freddolino (Wed Jun 06 2007 - 09:24:18 CDT)
  • Himanshu Khandelia (Wed Jun 06 2007 - 04:37:01 CDT)
• changing chain id and pdb generating
  • John Stone (Fri Dec 20 2013 - 17:06:46 CST)
  • Ramin Ekhteiari (Thu Dec 12 2013 - 03:06:36 CST)
• Changing color of a given atom
  • Axel Kohlmeyer (Wed Oct 13 2004 - 00:52:36 CDT)
  • Hess, Bret (Mon Oct 11 2004 - 18:31:03 CDT)
• Changing color scale bar location in VMD
  • John Stone (Fri May 06 2022 - 01:06:40 CDT)
  • Ahmad Alqaisi (Fri Mar 25 2022 - 20:30:06 CDT)
• Changing colors
  • Axel Kohlmeyer (Mon Nov 28 2005 - 14:56:54 CST)
  • ed mendez (Sun Nov 27 2005 - 06:30:51 CST)
• Changing colors during a dynamics
  • Luca Bellarosa (Tue Apr 22 2014 - 10:43:46 CDT)
  • Axel Kohlmeyer (Wed Apr 09 2014 - 10:15:02 CDT)
  • Luca Bellarosa (Wed Apr 09 2014 - 09:29:21 CDT)
• changing colours isosurface
  • John Stone (Mon Mar 13 2006 - 11:17:08 CST)
  • L. Michel Espinoza-Fonseca (Mon Mar 13 2006 - 10:44:23 CST)
• changing cpk shere scale in TCL
  • John Stone (Wed Oct 05 2005 - 14:47:45 CDT)
  • JC Gumbart (Wed Oct 05 2005 - 13:38:59 CDT)
  • pascal.baillod_at_epfl.ch (Wed Oct 05 2005 - 12:07:15 CDT)
• Changing decimal places in a label?
  • John Stone (Thu Feb 04 2010 - 10:48:38 CST)
  • Dr. Seth Olsen (Wed Feb 03 2010 - 23:21:12 CST)
• changing default colors for resname HIE HID HIP
  • Vlad Cojocaru (Mon Oct 30 2006 - 06:45:42 CST)
• changing default sec struct colors
  • Axel Kohlmeyer (Mon Jan 02 2006 - 16:12:46 CST)
  • sheldonp_at_sas.upenn.edu (Mon Jan 02 2006 - 10:18:21 CST)
• Changing Default Settings for VMD Main Window
  • Axel Kohlmeyer (Thu Jan 19 2006 - 08:02:47 CST)
  • Adrian Koh (Thu Jan 19 2006 - 05:08:23 CST)
• changing dihedral angles in molefacture
  • Peter Freddolino (Mon Nov 05 2007 - 07:11:28 CST)
  • Samuel Coulbourn Flores (Mon Nov 05 2007 - 02:42:48 CST)
• changing font size
  • John Stone (Thu Jun 21 2012 - 10:20:56 CDT)
  • John Stone (Thu Jun 21 2012 - 10:35:27 CDT)
  • Shyno Mathew (Thu Jun 21 2012 - 10:25:04 CDT)
  • John Stone (Thu Jun 21 2012 - 10:10:31 CDT)
  • Shyno Mathew (Thu Jun 21 2012 - 10:18:05 CDT)
  • Shyno Mathew (Tue Jun 19 2012 - 16:44:13 CDT)
• changing frame
  • JC Gumbart (Tue Jan 09 2007 - 23:55:16 CST)
  • Myunggi Yi (Tue Jan 09 2007 - 22:15:11 CST)
• Changing Graphical Representations
  • John Stone (Thu Jan 26 2006 - 14:03:29 CST)
  • Axel Kohlmeyer (Wed Jan 25 2006 - 06:53:15 CST)
  • Adrian Koh (Wed Jan 25 2006 - 00:15:54 CST)
• Changing isosurface wireframe thickness when rendering with Tachyon
  • Matthieu Benoit (Wed Feb 27 2019 - 23:44:27 CST)
• Changing isosurface wireframe thickness when rendering with TachyonL
  • John Stone (Wed Mar 21 2018 - 10:36:54 CDT)
  • Rune Thomas Kidmose (Wed Mar 21 2018 - 07:39:19 CDT)
• changing label format with some arithmetic
  • Axel Kohlmeyer (Wed Aug 17 2011 - 10:13:09 CDT)
  • maria goranovic (Wed Aug 17 2011 - 04:05:19 CDT)
• Changing molecule number
  • Maxim Belkin (Mon Feb 08 2016 - 11:24:47 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 10:57:24 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 10:28:24 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 10:05:36 CST)
  • Maxim Belkin (Mon Feb 08 2016 - 09:34:27 CST)
  • Irem Altan (Mon Feb 08 2016 - 09:02:03 CST)
• changing molid number
  • Axel Kohlmeyer (Mon Jul 04 2016 - 16:27:37 CDT)
  • Benjamin Hill (Mon Jul 04 2016 - 16:02:27 CDT)
• changing name of N and C term residues
  • Joaquim Rui de Castro Rodrigues (Fri Sep 21 2012 - 13:04:59 CDT)
  • Martin, Erik W (Fri Sep 21 2012 - 10:23:12 CDT)
• Changing Nvidia driver
  • Christian Wohlschlager (Tue Nov 17 2009 - 02:46:23 CST)
• changing occupancy for bunch of PDB file
  • John Stone (Fri Jul 08 2005 - 13:58:44 CDT)
  • Shahid Qamar (Fri Jul 08 2005 - 13:48:44 CDT)
• changing origin of rotation (NOT center of mass)
  • Michael Daily (Fri Aug 19 2011 - 13:41:06 CDT)
• Changing representations on a per-atom per-timestep basis
  • Ajasja LjubetiÄ� (Tue Jun 28 2011 - 12:48:11 CDT)
  • Axel Kohlmeyer (Tue Jun 28 2011 - 12:14:19 CDT)
  • J. Nathan Scott (Tue Jun 28 2011 - 11:34:19 CDT)
• Changing residue name for a resid
  • Vermaas, Josh (Sun Sep 19 2021 - 15:10:03 CDT)
  • Kiana Jahani (Sat Sep 18 2021 - 06:08:41 CDT)
• Changing Text Style
  • John Stone (Wed Oct 04 2006 - 00:10:36 CDT)
  • Dr. Seth Olsen (Tue Oct 03 2006 - 21:52:35 CDT)
• Changing the atom species during animation
  • John Stone (Wed Sep 15 2004 - 17:56:07 CDT)
  • Oliver Lanning (Wed Sep 08 2004 - 02:59:11 CDT)
• Changing the color of atoms of a particular name
  • Axel Kohlmeyer (Sun Jun 17 2012 - 06:45:40 CDT)
  • Andrew DeYoung (Sat Jun 16 2012 - 18:50:47 CDT)
• changing the color of Sn atom
  • Mark Cunningham (Wed May 11 2011 - 09:34:41 CDT)
  • Axel Kohlmeyer (Wed May 11 2011 - 08:37:46 CDT)
  • Goldsmith, Jacob (Wed May 11 2011 - 08:45:50 CDT)
  • beyza bilgic (Wed May 11 2011 - 06:12:50 CDT)
  • Beyza Bilgiç (Wed May 11 2011 - 05:24:31 CDT)
• Changing the color of some atoms
  • Majid Shahbabaei (Thu Nov 19 2015 - 22:54:49 CST)
• changing the color of subset of representation
  • John Stone (Wed Mar 15 2006 - 18:59:20 CST)
  • Jeffrey Tseng (Wed Mar 15 2006 - 14:54:58 CST)
  • John Stone (Wed Mar 15 2006 - 10:09:46 CST)
  • John Stone (Wed Mar 15 2006 - 10:05:55 CST)
  • Jeffrey Tseng (Wed Mar 15 2006 - 00:03:03 CST)
  • John Stone (Tue Mar 14 2006 - 15:34:57 CST)
  • Jeffrey Tseng (Tue Mar 14 2006 - 03:18:32 CST)
  • John Stone (Tue Mar 14 2006 - 00:39:40 CST)
  • Jeffrey Tseng (Mon Mar 13 2006 - 14:12:09 CST)
  • John Stone (Mon Mar 13 2006 - 11:41:19 CST)
  • Jeffrey Tseng (Sun Mar 12 2006 - 14:52:15 CST)
• changing the default representation for the sequence viewer
  • John Stone (Mon Oct 31 2005 - 16:25:10 CST)
  • Vlad Cojocaru (Mon Oct 31 2005 - 05:20:48 CST)
• Changing the display window size in a script
  • John Stone (Fri Feb 09 2007 - 03:06:28 CST)
  • Ignacio Fernández Galván (Fri Feb 09 2007 - 02:37:02 CST)
• Changing the Font size of the XYZ Logo
  • Axel Kohlmeyer (Fri Apr 11 2014 - 12:45:51 CDT)
  • Mehdi Eftekhari (Fri Apr 11 2014 - 12:00:25 CDT)
  • Maxim Belkin (Fri Apr 11 2014 - 11:05:35 CDT)
  • Mehdi Eftekhari (Fri Apr 11 2014 - 10:48:37 CDT)
• Changing the format of atom labels from %f.3 to something else
  • Giacomo Fiorin (Thu Nov 30 2017 - 09:13:09 CST)
  • sperez14_at_us.es (Thu Nov 30 2017 - 04:40:09 CST)
  • sperez14_at_us.es (Thu Nov 30 2017 - 02:43:50 CST)
• Changing the Index values of a molecule (the differenece between gro and pdb files)
  • Axel Kohlmeyer (Wed Aug 15 2007 - 12:51:30 CDT)
  • Giovanni Bellesia (Wed Aug 15 2007 - 13:32:56 CDT)
  • Peter Freddolino (Wed Aug 15 2007 - 12:34:52 CDT)
  • Arneh Babakhani (Wed Aug 15 2007 - 13:06:17 CDT)
  • Arneh Babakhani (Wed Aug 15 2007 - 12:39:08 CDT)
• Changing the label for resname
  • John Stone (Mon Aug 09 2004 - 16:06:46 CDT)
  • Sunita Patel (Mon Aug 09 2004 - 09:44:03 CDT)
• changing the name of a residue
  • John Stone (Mon Aug 21 2006 - 10:37:59 CDT)
  • L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 10:23:21 CDT)
• changing the order of atom selections / alignment issue
  • Leonardo Trabuco (Mon Aug 27 2007 - 11:07:47 CDT)
  • Jim Pfaendtner (Mon Aug 27 2007 - 10:58:31 CDT)
  • Leonardo Trabuco (Sat Aug 25 2007 - 01:31:45 CDT)
  • Jim Pfaendtner (Fri Aug 24 2007 - 17:58:51 CDT)
• changing the representation of a vector
  • Axel Kohlmeyer (Fri Nov 17 2006 - 11:02:42 CST)
  • Peter Freddolino (Fri Nov 17 2006 - 10:36:11 CST)
  • L. Michel Espinoza-Fonseca (Fri Nov 17 2006 - 10:09:55 CST)
• changing the representation of all loaded molecules
  • Elif Ozkirimli (Wed May 26 2004 - 13:32:28 CDT)
  • Jim Phillips (Thu May 20 2004 - 15:38:37 CDT)
  • Axel Kohlmeyer (Thu May 20 2004 - 13:35:08 CDT)
  • John Stone (Thu May 20 2004 - 09:13:35 CDT)
  • Elif Ozkirimli (Thu May 20 2004 - 08:55:25 CDT)
  • Axel Kohlmeyer (Thu May 20 2004 - 02:34:14 CDT)
  • Elif Ozkirimli (Wed May 19 2004 - 14:32:02 CDT)
• Changing the rotation and centering matrix of a molecule
  • Justin Gullingsrud (Wed Oct 13 2004 - 13:29:24 CDT)
  • CHAUMONT Alain (Wed Oct 13 2004 - 10:39:48 CDT)
• Changing the Secondary Structure of a Protein
  • MIke S (Sun Dec 28 2008 - 01:18:23 CST)
• changing the tile angle of a peptide embedded in a membrane
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:05:36 CDT)
  • John Stone (Mon Sep 10 2007 - 13:09:39 CDT)
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 12:57:13 CDT)
• changing the tilt angle of a peptide embedded in a membrane
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:08:38 CDT)
• Changing the title in the viewer window
  • John Stone (Mon Oct 03 2005 - 11:43:03 CDT)
  • Palmer, Teresa (Wed Sep 28 2005 - 12:16:55 CDT)
• Changing Tk console background
  • Lindsey Prignano (Wed Aug 25 2021 - 18:38:01 CDT)
  • Victor Kwan (Wed Aug 25 2021 - 18:05:26 CDT)
  • Manasa Yadavalli (Wed Aug 25 2021 - 15:46:57 CDT)
• Charge coloring and Stereo hot keys
  • John Stone (Mon Aug 19 2002 - 10:29:48 CDT)
  • Jill Vickery (Fri Aug 16 2002 - 17:48:55 CDT)
• charge exceed the range between Low bound and High bound in ffTK charge optimization
  • Wenhao Liu (Fri Jun 07 2013 - 10:00:43 CDT)
  • Mayne, Christopher G (Fri Jun 07 2013 - 09:29:16 CDT)
  • Wenhao Liu (Fri Jun 07 2013 - 09:16:14 CDT)
  • JC Gumbart (Fri Jun 07 2013 - 07:40:49 CDT)
  • Wenhao Liu (Thu Jun 06 2013 - 21:58:35 CDT)
• charge information for the PMEpot plugin
  • Axel Kohlmeyer (Wed Jun 01 2011 - 12:25:04 CDT)
  • Raul Araya (Wed Jun 01 2011 - 11:48:07 CDT)
• Charge opt in FFTK
  • Ushasi Pramanik 1710228 (Fri Aug 03 2018 - 05:25:34 CDT)
• charge opt not converged
  • Pawel Kedzierski (Thu Apr 22 2021 - 09:13:08 CDT)
  • Lokendra Poudel (Thu Nov 19 2020 - 10:27:30 CST)
  • Pawel Kedzierski (Thu Nov 19 2020 - 03:25:43 CST)
  • Daniel Fellner (Wed Nov 18 2020 - 18:18:04 CST)
  • Daniel Fellner (Wed Nov 18 2020 - 16:34:30 CST)
  • Daniel Fellner (Wed Nov 18 2020 - 15:45:39 CST)
  • Gumbart, JC (Wed Nov 18 2020 - 14:35:01 CST)
  • Lokendra Poudel (Wed Nov 18 2020 - 10:12:40 CST)
• charge optimization
  • JC Gumbart (Sun Oct 18 2020 - 18:37:03 CDT)
  • Lokendra Poudel (Tue Oct 13 2020 - 17:55:20 CDT)
• Charge Optimization error
  • Mayne, Christopher G (Mon Feb 20 2017 - 14:23:09 CST)
  • Lakshmikanth Srinivasamurthy (Sun Feb 19 2017 - 03:13:35 CST)
• Charge Optimization error: error deleting "base-wat.pdb": permission denied
  • Zeinab Emami (Sat Nov 08 2014 - 15:28:08 CST)
  • Mayne, Christopher G (Sat Nov 08 2014 - 11:29:31 CST)
  • Ashar Malik (Sat Nov 08 2014 - 10:46:00 CST)
  • Zeinab Emami (Sat Nov 08 2014 - 10:30:55 CST)
  • Mayne, Christopher G (Sat Nov 08 2014 - 10:11:49 CST)
  • Zeinab Emami (Sat Nov 08 2014 - 07:40:24 CST)
• Charge optimization in ffTK
  • Amira Yu (Thu Nov 05 2015 - 07:20:32 CST)
  • Pawel Kedzierski (Thu Nov 05 2015 - 02:04:17 CST)
  • Amira Yu (Wed Nov 04 2015 - 14:05:26 CST)
  • Mayne, Christopher G (Wed Nov 04 2015 - 13:51:00 CST)
  • Amira Yu (Wed Nov 04 2015 - 09:09:39 CST)
• charge re-optimization
  • Darre Castell, Leonardo (Fri Jul 19 2013 - 10:13:47 CDT)
  • Mayne, Christopher G (Fri Jul 19 2013 - 10:08:36 CDT)
  • Darre Castell, Leonardo (Fri Jul 19 2013 - 08:10:47 CDT)
• Charge State Confusion
  • MIke S (Fri May 09 2008 - 00:45:39 CDT)
  • John Stone (Thu May 08 2008 - 22:55:36 CDT)
  • MIke S (Thu May 08 2008 - 22:17:33 CDT)
• charge surface area
  • Shirley Li (Fri Aug 13 2004 - 11:48:00 CDT)
• charge visualization
  • Axel Kohlmeyer (Tue Feb 07 2012 - 19:49:17 CST)
  • niladri patra (Tue Feb 07 2012 - 18:41:37 CST)
• charges in VMD 1.9 vs. VMD 1.8.7
  • Axel Kohlmeyer (Fri Feb 10 2012 - 08:38:12 CST)
  • Philippe Bopp / temporary (Fri Feb 10 2012 - 07:43:17 CST)
• charges optimisation of a cationic molecule with ffTK
  • Massimiliano Porrini (Mon Mar 03 2014 - 03:45:21 CST)
  • JC Gumbart (Mon Mar 03 2014 - 00:06:04 CST)
  • Massimiliano Porrini (Fri Feb 28 2014 - 05:18:51 CST)
• Charlie Buy your loved one Hermes
  • Dick Medrano (Thu Sep 27 2007 - 20:39:34 CDT)
• Charm force field for POPS lipid
  • Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
• Charm++ fatal error: FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 NG301 (ATOMS 6407 6408) .. ERROR) Error connecting to localhost on port 3000
  • Joao Ribeiro (Mon Dec 16 2019 - 09:26:08 CST)
  • Mubarak Alamri (Sat Dec 14 2019 - 18:30:51 CST)
• charm27 forcefield_topology
  • Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
• charmm binary ele. pot.
  • John Stone (Wed Mar 11 2009 - 14:45:06 CDT)
  • John Stone (Wed Mar 11 2009 - 13:55:37 CDT)
  • Axel Kohlmeyer (Mon Mar 09 2009 - 13:59:25 CDT)
  • Bogdan Costescu (Mon Mar 09 2009 - 13:16:00 CDT)
  • Axel Kohlmeyer (Mon Mar 09 2009 - 11:57:21 CDT)
  • John Stone (Mon Mar 09 2009 - 09:45:56 CDT)
  • Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
• CHARMM CRD files: COR plugin
  • John Stone (Tue Dec 16 2003 - 21:02:57 CST)
  • Josh Ward (Fri Dec 12 2003 - 14:52:22 CST)
• CHARMM electrostatic potential
  • ivana adamovic (Thu Feb 01 2007 - 13:17:21 CST)
  • John Stone (Thu Feb 01 2007 - 11:16:38 CST)
  • ivana adamovic (Thu Feb 01 2007 - 08:28:20 CST)
• Charmm expanded coordinate file format?
  • John Stone (Mon Dec 26 2005 - 12:02:31 CST)
  • Joshua Speidel (Thu Dec 22 2005 - 19:30:51 CST)
• Charmm FF parameter file for 2-hydroxypyridine
  • Mayne, Christopher G (Tue Jul 24 2012 - 13:52:23 CDT)
  • Him Bandhu Upadhyay (Tue Jul 24 2012 - 13:10:30 CDT)
• CHARMM parameters for ADP-ribosylated arginine?
  • SHIVAM TIWARI (Wed Dec 30 2020 - 01:15:40 CST)
  • Josh Vermaas (Tue Dec 29 2020 - 18:28:59 CST)
  • Aaron Oakley (Tue Dec 29 2020 - 18:03:21 CST)
  • Smith, Harper E. (Tue Dec 29 2020 - 16:03:51 CST)
• CHARMM parameters for iodide and bromide
  • Mayne, Christopher G (Mon Oct 26 2015 - 19:29:41 CDT)
  • Stojanoski, Vlatko (Sat Oct 24 2015 - 09:37:45 CDT)
  • Stojanoski, Vlatko (Fri Oct 23 2015 - 12:10:58 CDT)
• CHARMM parameters for Mn 2+ ion
  • Daniel Aguayo (Fri Mar 25 2011 - 14:45:15 CDT)
  • Jernej Zidar (Fri Mar 25 2011 - 12:57:00 CDT)
  • Lisa Brown (Fri Mar 25 2011 - 10:43:45 CDT)
• Charmm parameters for Polybutylene terephthalate (PBT)
  • Eduardo (Thu Mar 11 2010 - 01:33:56 CST)
  • muniyamuthu.raviprasad_at_ndsu.edu (Wed Mar 10 2010 - 13:20:38 CST)
• CHARMM TO AMBER FORMAT CONVERT
  • Axel Kohlmeyer (Sun Oct 12 2008 - 19:26:18 CDT)
  • Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
• CHARMM to AMBER trajectory conversion
  • Axel Kohlmeyer (Fri Dec 19 2008 - 09:56:01 CST)
  • Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
• charmm toppology : internal coordinates
  • Arturas Ziemys (Tue Aug 22 2006 - 16:39:00 CDT)
• charmm vs amber
  • Tommy Wang (Mon Jul 29 2002 - 07:01:07 CDT)
• CHARMM36 alleged missing CC CT1 NH2 angle params
  • Francesco Pietra (Tue May 17 2016 - 11:43:05 CDT)
  • JC Gumbart (Tue May 17 2016 - 09:29:52 CDT)
  • Francesco Pietra (Mon May 16 2016 - 08:54:31 CDT)
  • Francesco Pietra (Mon May 16 2016 - 08:54:45 CDT)
  • Peter Freddolino (Mon May 16 2016 - 07:46:47 CDT)
  • Francesco Pietra (Mon May 16 2016 - 04:30:29 CDT)
  • Francesco Pietra (Mon May 16 2016 - 02:45:55 CDT)
• charmm36 and charmm27 together with namd?
  • JC Gumbart (Thu Jul 18 2013 - 09:00:37 CDT)
  • Francesco Pietra (Thu Jul 18 2013 - 01:54:35 CDT)
• CHARMM36 and water: can the H-H "bond" be added to the wat.top file used by solvate.tcl?
  • Gumbart, JC (Wed Jul 05 2023 - 12:32:43 CDT)
  • Cindy Cregier (Wed Jul 05 2023 - 01:14:37 CDT)
• CHARMM36 topology files, AutoPSF and DNA
  • Law, Yu Kay (Fri Aug 17 2012 - 23:32:24 CDT)
  • Suresh (Fri Aug 17 2012 - 23:30:41 CDT)
  • JC Gumbart (Fri Aug 17 2012 - 13:57:45 CDT)
  • Law, Yu Kay (Fri Aug 17 2012 - 10:20:26 CDT)
• charmm36 vs charmm27/22 topology
  • Vermaas, Joshua (Mon Jan 30 2017 - 15:13:17 CST)
  • Neeraj Agrawal (Mon Jan 30 2017 - 14:14:28 CST)
  • Vermaas, Joshua (Mon Jan 30 2017 - 13:49:16 CST)
  • Neeraj Agrawal (Mon Jan 30 2017 - 11:29:19 CST)
• charmmgen to autopsf
  • Peter Freddolino (Tue Mar 22 2011 - 08:40:16 CDT)
  • Peter Freddolino (Tue Mar 22 2011 - 08:37:16 CDT)
  • Francesco Pietra (Tue Mar 22 2011 - 05:32:21 CDT)
  • Peter Freddolino (Mon Mar 21 2011 - 19:42:50 CDT)
  • Francesco Pietra (Mon Mar 21 2011 - 11:50:13 CDT)
  • Peter Freddolino (Mon Mar 21 2011 - 05:48:06 CDT)
  • Francesco Pietra (Mon Mar 21 2011 - 05:12:05 CDT)
• ChatGPT knows basic VMD scripting...
  • Bennion, Brian (Mon Feb 13 2023 - 11:28:20 CST)
  • EDUARDO JOSÉ AZEVEDO CORREA (Mon Feb 13 2023 - 09:37:06 CST)
  • Dusan Racko (Mon Feb 13 2023 - 07:27:29 CST)
  • John Stone (Sun Feb 12 2023 - 22:45:01 CST)
• Cheap 3D Glasses
  • John Stone (Tue Apr 24 2007 - 14:26:11 CDT)
  • Gustavo Seabra (Mon Apr 23 2007 - 18:07:07 CDT)
• Check and remove the overlapping between atoms
  • Axel Kohlmeyer (Sun Feb 16 2020 - 17:47:25 CST)
  • Amir Afshar (Sat Feb 15 2020 - 17:14:23 CST)
  • Amir Afshar (Sat Feb 15 2020 - 15:18:32 CST)
  • Giacomo Fiorin (Sat Feb 15 2020 - 14:57:49 CST)
  • Amir Afshar (Sat Feb 15 2020 - 13:31:55 CST)
  • Axel Kohlmeyer (Sat Feb 15 2020 - 11:09:48 CST)
  • Giacomo Fiorin (Sat Feb 15 2020 - 11:14:47 CST)
  • Amir Afshar (Sat Feb 15 2020 - 10:26:43 CST)
• Check DCD finish
  • Georcki Ropon (Tue Mar 01 2022 - 11:06:02 CST)
• Check if the lysine residues are deprotonated or not inside the membrane ?
  • Roshan Shrestha (Fri May 24 2019 - 08:55:40 CDT)
• Check out my photos on Facebook
  • Aneesh Cna (Tue Sep 28 2010 - 04:27:52 CDT)
• Child killed error: unknown signal
  • John Stone (Tue Jun 16 2020 - 23:31:47 CDT)
  • Mintare Cesiunaite (Tue Jun 16 2020 - 23:15:36 CDT)
• chime vs vmd
  • Peter Schellenberg (Tue Aug 14 2007 - 05:37:55 CDT)
  • John Stone (Mon Aug 13 2007 - 11:49:24 CDT)
  • Francesco Pietra (Sun Aug 12 2007 - 11:11:05 CDT)
• Chiral indices in VMD Nanotube Builder
  • Akif Ramzan (Wed Jun 13 2018 - 08:10:11 CDT)
• chlorine atom: Cl or CL ?
  • Denilson F. Oliveira (Fri Dec 02 2016 - 12:03:00 CST)
• chloroform box
  • Axel Kohlmeyer (Sun Aug 05 2007 - 12:35:15 CDT)
  • Francesco Pietra (Sun Aug 05 2007 - 02:28:15 CDT)
  • Axel Kohlmeyer (Sat Aug 04 2007 - 11:38:10 CDT)
  • Peter Freddolino (Sat Aug 04 2007 - 12:04:20 CDT)
  • Francesco Pietra (Sat Aug 04 2007 - 09:08:41 CDT)
  • Peter Freddolino (Sat Aug 04 2007 - 08:00:48 CDT)
  • Francesco Pietra (Sat Aug 04 2007 - 00:52:20 CDT)
• chloroform box ChARMM
  • Francesco Pietra (Wed Nov 17 2021 - 04:41:24 CST)
• Chloroform Solvent Box
  • Harindar Keer (Tue Nov 23 2004 - 11:17:45 CST)
• Choice of a Linux machine for VMD and high-end computing
  • Karsten Suhre (Fri Apr 08 2005 - 07:34:04 CDT)
  • Benjamin Goldsteen (Wed Apr 06 2005 - 16:58:07 CDT)
  • John Stone (Wed Apr 06 2005 - 16:01:34 CDT)
  • Sabuj Pattanayek (Wed Apr 06 2005 - 15:39:19 CDT)
  • John Stone (Wed Apr 06 2005 - 11:27:54 CDT)
  • Karsten Suhre (Wed Apr 06 2005 - 11:09:58 CDT)
• choice of VDW radius
  • Axel Kohlmeyer (Fri Apr 30 2010 - 08:34:36 CDT)
  • Nicolas Floquet (Fri Apr 30 2010 - 02:43:58 CDT)
• Choosing an appropriate isovalue for comparing different systems
  • John Stone (Tue Jul 14 2015 - 10:14:12 CDT)
  • DEBOSTUTI GHOSHDASTIDAR (Sun Jul 12 2015 - 10:37:35 CDT)
• choosing an optimal workstation video card for VMD
  • Jeremiah Babcock (Tue May 06 2014 - 21:58:36 CDT)
  • John Stone (Tue May 06 2014 - 16:01:20 CDT)
  • Josh Vermaas (Tue May 06 2014 - 12:48:05 CDT)
  • Axel Kohlmeyer (Tue May 06 2014 - 12:58:13 CDT)
  • Erik Nordgren (Tue May 06 2014 - 11:08:40 CDT)
• Chromium
  • Alexander Farley (Sun Sep 08 2002 - 09:44:58 CDT)
  • Cesar Delgado (Mon Aug 05 2002 - 16:19:09 CDT)
  • John Stone (Mon Aug 05 2002 - 14:33:57 CDT)
  • Cesar Delgado (Thu Aug 01 2002 - 16:21:54 CDT)
  • John Stone (Thu Aug 01 2002 - 16:15:00 CDT)
  • Cesar Delgado (Thu Aug 01 2002 - 16:07:40 CDT)
  • John Stone (Thu Aug 01 2002 - 15:48:34 CDT)
  • Cesar Delgado (Thu Aug 01 2002 - 15:16:31 CDT)
• CIF file reader
  • Giacomo Fiorin (Thu Dec 02 2021 - 10:04:56 CST)
  • John Stone (Wed Dec 01 2021 - 23:38:29 CST)
  • Axel Kohlmeyer (Wed Dec 01 2021 - 22:26:19 CST)
  • FX (Wed Dec 01 2021 - 04:14:59 CST)
  • FX (Sat Apr 04 2020 - 11:10:20 CDT)
  • Chris Neale (Wed Apr 01 2020 - 01:48:32 CDT)
  • John Stone (Wed Apr 01 2020 - 00:53:17 CDT)
  • Giacomo Fiorin (Sun Mar 29 2020 - 10:04:55 CDT)
  • John Keller (Sun Mar 29 2020 - 02:55:42 CDT)
  • Chris Neale (Sat Mar 28 2020 - 23:24:24 CDT)
  • John Stone (Sat Mar 28 2020 - 22:10:43 CDT)
  • FX (Sat Mar 28 2020 - 19:35:14 CDT)
  • Giacomo Fiorin (Sat Mar 28 2020 - 15:53:53 CDT)
  • FX (Sat Mar 28 2020 - 13:29:56 CDT)
  • John Stone (Tue Mar 24 2020 - 11:06:27 CDT)
  • Mortimer Hemmit (Mon Mar 23 2020 - 15:57:20 CDT)
  • FX (Sun Mar 22 2020 - 17:00:35 CDT)
• Cionize
  • John Stone (Fri Sep 16 2011 - 13:48:43 CDT)
  • Christian Wohlschlager (Thu Sep 15 2011 - 01:12:16 CDT)
  • Christian Wohlschlager (Fri Sep 09 2011 - 02:10:28 CDT)
• CIonize Not Installed on Windows VMD
  • Arash Firouzbakht (Tue Apr 13 2021 - 14:33:15 CDT)
• Cionize on mac cuda
  • daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
  • John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
  • daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
  • John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
  • John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
  • daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
  • daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
• Cionize plugin
  • Paula Mihaljevic-Juric (Tue May 21 2019 - 09:46:53 CDT)
• Cionize Plugin - Output Options?
  • Michael Robinson (Tue Mar 03 2020 - 23:57:34 CST)
• cionize plugin VMD
  • Peter Freddolino (Mon Nov 09 2020 - 14:34:37 CST)
  • Atreyo Pal (Mon Nov 09 2020 - 11:33:51 CST)
• Cionize question for DNA molecule
  • Parisa Akhski (Thu Jul 15 2010 - 11:52:54 CDT)
• cispeptide and chirality extrab options
  • Tristan Croll (Mon Sep 09 2013 - 04:15:06 CDT)
• citing SODIUM program
  • John Stone (Tue Jan 14 2014 - 09:19:27 CST)
  • Shyno Mathew (Sat Jan 04 2014 - 10:45:36 CST)
• CL
  • Axel Kohlmeyer (Fri Jul 04 2014 - 10:47:12 CDT)
  • Christian Wohlschlager (Fri Jul 04 2014 - 06:13:43 CDT)
• Cl ions
  • Justin Gullingsrud (Thu Jan 16 2003 - 23:26:37 CST)
  • Ioana Cozmuta (Thu Jan 16 2003 - 21:05:34 CST)
• Clarification on RMSF Calculation
  • Efthymiou, Christos (Mon May 30 2022 - 16:01:41 CDT)
  • Vermaas, Josh (Mon May 30 2022 - 15:52:12 CDT)
  • Efthymiou, Christos (Mon May 30 2022 - 14:08:16 CDT)
• Clarification on solvent box sizing
  • Ian Stokes-Rees (Wed Sep 22 2010 - 14:42:30 CDT)
• clarification to "problem using pbc wrap"
  • politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
• classify and compute the forces between two atoms
  • Axel Kohlmeyer (Mon Feb 25 2008 - 10:08:44 CST)
  • ChenFei (Mon Feb 25 2008 - 06:38:58 CST)
• Classroom Stereo projection
  • Kim, Kwiseon (Wed Oct 19 2005 - 12:30:12 CDT)
  • John Stone (Wed Oct 19 2005 - 11:08:29 CDT)
  • Kim, Kwiseon (Wed Oct 19 2005 - 11:03:19 CDT)
  • John Stone (Mon Oct 17 2005 - 17:24:01 CDT)
  • Paul Van Allsburg (Mon Oct 17 2005 - 08:42:01 CDT)
  • John Stone (Fri Oct 14 2005 - 15:45:29 CDT)
  • Paul Van Allsburg (Thu Oct 13 2005 - 15:16:20 CDT)
• clear altloc field
  • John Stone (Tue Mar 12 2013 - 14:50:37 CDT)
  • Martin, Erik W (Mon Mar 11 2013 - 16:49:47 CDT)
• Clip
  • John Stone (Thu Sep 29 2005 - 00:22:12 CDT)
  • Adrian turjanski (Wed Sep 28 2005 - 20:49:04 CDT)
• clip plane and cpk / VdW
  • Philippe Bopp / temporary (Thu Nov 24 2011 - 09:58:54 CST)
  • Pawel Kedzierski (Thu Nov 24 2011 - 02:52:49 CST)
  • PaweÅ‚ KÄ™dzierski (Thu Nov 24 2011 - 02:52:32 CST)
  • BIN ZHANG (Wed Nov 23 2011 - 11:25:22 CST)
  • John Stone (Wed Nov 23 2011 - 09:22:43 CST)
  • Philippe Bopp / temporary (Wed Nov 23 2011 - 04:48:33 CST)
• Clipping plane
  • John Stone (Mon Jan 25 2021 - 23:55:19 CST)
  • Edgar Galicia (Mon Jan 18 2021 - 11:58:43 CST)
  • Chris Knorowski (Wed Oct 23 2013 - 17:33:14 CDT)
  • Josh Vermaas (Wed Oct 09 2013 - 17:08:15 CDT)
  • Chris Knorowski (Wed Oct 09 2013 - 15:44:53 CDT)
  • Axel Kohlmeyer (Wed Oct 09 2013 - 15:51:15 CDT)
  • John Stone (Wed Oct 09 2013 - 15:55:12 CDT)
  • Axel Kohlmeyer (Wed Oct 09 2013 - 15:19:52 CDT)
  • Chris Knorowski (Wed Oct 09 2013 - 14:25:45 CDT)
• Clipping plane redering issues
  • Korey R (Thu Mar 07 2019 - 18:53:54 CST)
  • Korey R (Mon Mar 04 2019 - 10:46:00 CST)
• Clipping plane tool and export
  • John Stone (Wed Dec 07 2005 - 13:17:20 CST)
  • Paul D. Jones (Wed Dec 07 2005 - 12:58:40 CST)
• clipplane
  • John Stone (Fri Oct 14 2005 - 15:58:31 CDT)
  • Linda (Wed Oct 12 2005 - 19:10:35 CDT)
• Clonerep GUI issue with VMD CVS
  • John Stone (Mon May 02 2016 - 11:37:42 CDT)
  • Jérôme Hénin (Mon May 02 2016 - 11:26:13 CDT)
  • John Stone (Mon May 02 2016 - 10:47:18 CDT)
  • Jérôme Hénin (Mon May 02 2016 - 10:36:17 CDT)
  • Nuno Sousa Cerqueira (Fri Apr 08 2016 - 09:56:57 CDT)
  • John Stone (Fri Apr 08 2016 - 09:14:42 CDT)
  • Josh Vermaas (Fri Apr 08 2016 - 09:22:36 CDT)
  • Jérôme Hénin (Fri Apr 08 2016 - 04:28:03 CDT)
• cloning a molecule
  • Thomas C. Bishop (Mon Nov 05 2007 - 21:27:01 CST)
  • Axel Kohlmeyer (Mon Nov 05 2007 - 00:35:27 CST)
  • John Stone (Fri Nov 02 2007 - 14:22:26 CDT)
  • dimka (Thu Nov 01 2007 - 13:46:44 CDT)
• Close contacts upon solvation of XYZ file.
  • Pawel Kedzierski (Fri Nov 25 2016 - 03:20:37 CST)
  • Dawid das (Fri Nov 25 2016 - 01:52:10 CST)
  • Pawel Kedzierski (Fri Nov 25 2016 - 01:27:57 CST)
  • John Stone (Thu Nov 24 2016 - 12:18:43 CST)
  • Dawid das (Thu Nov 24 2016 - 10:30:50 CST)
• closewater.tcl
  • Irene Newhouse (Mon Mar 17 2008 - 18:59:24 CDT)
  • Axel Kohlmeyer (Mon Mar 17 2008 - 16:02:02 CDT)
  • Irene Newhouse (Mon Mar 17 2008 - 15:50:03 CDT)
  • L. Michel Espinoza-Fonseca (Mon Mar 17 2008 - 15:41:14 CDT)
  • Irene Newhouse (Mon Mar 17 2008 - 14:48:37 CDT)
• Closing filehandles in vmd tcl script
  • Justin Gullingsrud (Fri Jan 21 2005 - 01:28:42 CST)
  • Ben Roberts (Thu Jan 20 2005 - 21:05:51 CST)
• Cluster analysis
  • John Stone (Tue Nov 09 2021 - 16:11:52 CST)
  • SYEDA SABIHA SULTANA LUBNA . (Mon Nov 08 2021 - 04:49:50 CST)
  • OZGE ENGIN (Tue Feb 05 2008 - 06:29:17 CST)
  • Luis Gracia (Mon Jan 07 2008 - 11:22:03 CST)
  • Francesco Pietra (Mon Jan 07 2008 - 15:44:15 CST)
  • John Stone (Mon Jan 07 2008 - 11:51:34 CST)
  • Francesco Pietra (Mon Jan 07 2008 - 12:08:27 CST)
  • Francesco Pietra (Mon Jan 07 2008 - 04:35:30 CST)
  • John Stone (Mon Jan 07 2008 - 01:59:40 CST)
  • Francesco Pietra (Sun Jan 06 2008 - 04:27:19 CST)
• Cluster Analysis given a dcd trajectory
  • pbrenne1_at_nd.edu (Sun Jan 09 2005 - 13:25:16 CST)
  • lug2002_at_med.cornell.edu (Fri Jan 07 2005 - 23:41:14 CST)
  • Axel Kohlmeyer (Sat Jan 08 2005 - 13:28:55 CST)
  • pbrenne1_at_nd.edu (Fri Jan 07 2005 - 15:58:41 CST)
• cluster of particles
  • Salvador H-V (Sun Dec 06 2009 - 20:00:39 CST)
• Cluster plug
  • John Stone (Wed Oct 23 2013 - 10:15:57 CDT)
  • Axel Kohlmeyer (Tue Oct 22 2013 - 16:55:40 CDT)
  • Ramin Ekhteiari (Tue Oct 22 2013 - 15:39:48 CDT)
• Cluster plugin and Gromacs g_cluster
  • OZGE ENGIN (Wed Feb 27 2008 - 07:21:15 CST)
• Clustering algorithm
  • Abramyan, Tigran (Fri Sep 02 2016 - 12:27:59 CDT)
• Clustering by RMSD
  • Smith, Harper E. (Wed May 12 2021 - 13:27:57 CDT)
  • Lilian Esmeralda Araujo Arcos (Wed May 12 2021 - 12:16:56 CDT)
• Clustering MD trajectories
  • Vijay Vammi (Wed Sep 21 2011 - 15:06:13 CDT)
  • Kirby Vandivort (Wed Sep 21 2011 - 14:52:54 CDT)
  • Vijay Vammi (Mon Sep 19 2011 - 14:33:34 CDT)
  • Anurag Sethi (Fri Sep 16 2011 - 17:04:29 CDT)
  • John Stone (Fri Sep 16 2011 - 15:02:59 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 15:42:45 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 14:52:47 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 10:39:40 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
  • Vijay Vammi (Fri Sep 16 2011 - 08:13:49 CDT)
• Clustering plugin updated to v2.0
  • Luis Gracia (Thu May 10 2012 - 12:54:20 CDT)
• clustering tool is not working
  • Saikat Pal (Tue Aug 27 2019 - 00:38:21 CDT)
• Clusters help
  • Axel Kohlmeyer (Wed Sep 17 2014 - 05:53:48 CDT)
  • Axel Kohlmeyer (Wed Sep 17 2014 - 04:41:59 CDT)
  • Alessandro Mariani (Wed Sep 17 2014 - 03:57:10 CDT)
• clusters visualization with colours
  • John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
  • Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
• CMAP and psfgen
  • Justin Gullingsrud (Fri Oct 08 2004 - 14:57:48 CDT)
  • Jorge Pikunic (Fri Oct 08 2004 - 12:38:47 CDT)
• CMAP problem
  • John Stone (Tue Jan 03 2006 - 14:05:32 CST)
  • Morad Alawneh (Tue Jan 03 2006 - 13:45:41 CST)
• cmd line FFK
  • Mayne, Christopher G (Fri Aug 09 2013 - 11:26:52 CDT)
  • surya narayanan chandrasekaran (Fri Aug 09 2013 - 08:00:12 CDT)
• CMYK
  • Ignacio Fernández Galván (Wed Oct 31 2007 - 06:28:02 CDT)
  • John Stone (Tue Oct 30 2007 - 17:49:30 CDT)
  • Adrian Roitberg (Tue Oct 30 2007 - 16:08:37 CDT)
• CMYK images
  • Samuel Flores (Sat Jul 30 2005 - 16:42:40 CDT)
  • Dow Hurst DPHURST (Fri Jul 29 2005 - 19:54:46 CDT)
  • Dow Hurst DPHURST (Fri Jul 29 2005 - 19:51:30 CDT)
  • John Stone (Fri Jul 29 2005 - 18:21:28 CDT)
  • ioana_at_pegasus.arc.nasa.gov (Thu Jul 28 2005 - 21:13:08 CDT)
• cns files
  • Matthew Wilce (Sun May 21 2000 - 05:28:05 CDT)
• CNT Analysis
  • Christopher Stiles (Tue Aug 07 2007 - 10:12:13 CDT)
  • Axel Kohlmeyer (Tue Aug 07 2007 - 08:54:06 CDT)
  • Christopher Stiles (Tue Aug 07 2007 - 08:41:31 CDT)
• CNT structure formation
  • Raman Preet Singh (Mon Nov 29 2021 - 03:11:57 CST)
  • Philippe Bopp (Sat Nov 27 2021 - 17:32:46 CST)
  • Axel Kohlmeyer (Sat Nov 27 2021 - 14:03:46 CST)
  • Kibria Imtiaz Shabbir (Fri Nov 26 2021 - 21:48:21 CST)
  • Kibria Imtiaz Shabbir (Thu Nov 25 2021 - 03:52:13 CST)
• Coarse Grain model for graphene
  • Abhishek TYAGI (Wed May 04 2016 - 22:20:34 CDT)
• Coarse grain modelling problem
  • Hasan Mahmud (Tue Nov 19 2019 - 14:26:30 CST)
• Coarse Grain Setup
  • Mcguire, Kelly (Mon Feb 05 2024 - 00:01:55 CST)
• Coarse Grained - angle/bond parameters
  • Steven Neumann (Mon Nov 26 2012 - 10:20:33 CST)
• Coarse Graining Cholesterol with VMD's cg builder
  • Christopher Gutnajer (Tue Jul 09 2013 - 22:30:01 CDT)
  • Kirby Vandivort (Tue Jul 09 2013 - 13:14:18 CDT)
  • Christopher Gutnajer (Fri Jun 28 2013 - 15:12:48 CDT)
• Coarse graining disordered protein
  • Peter Freddolino (Tue Aug 18 2020 - 00:32:47 CDT)
  • Ritu Arora (Wed Aug 12 2020 - 12:34:41 CDT)
• coarse-grained solvate usage
  • Kirby Vandivort (Fri Nov 20 2009 - 12:09:51 CST)
  • Francesco Pietra (Fri Nov 20 2009 - 05:12:35 CST)
• Coarse-graining a retro protein
  • Sourav Ray (Tue Mar 17 2015 - 01:25:46 CDT)
• Coarse-Graining Protein with Ion Ligands
  • Raman Preet Singh (Thu Jan 21 2021 - 00:48:57 CST)
  • Isuru Herath (Wed Jan 20 2021 - 21:12:31 CST)
• Coarse-graining: Inability to assign charge to C-terminus using fix_martini_psf.tcl
  • Sourav Ray (Mon Dec 14 2015 - 18:22:50 CST)
  • Sourav Ray (Mon Dec 14 2015 - 17:51:46 CST)
• code precision problem
  • Jeremiah Babcock (Mon Apr 21 2014 - 12:32:30 CDT)
  • JC Gumbart (Thu Apr 17 2014 - 12:48:05 CDT)
  • Jeremiah Babcock (Wed Apr 16 2014 - 15:06:15 CDT)
• colomb map in volmap tool
  • John Stone (Mon May 28 2007 - 17:17:23 CDT)
  • Raul Araya (Mon May 28 2007 - 17:03:10 CDT)
• Color a protein based on a property
  • John Stone (Fri Aug 10 2007 - 15:09:49 CDT)
  • Naresh (Fri Aug 10 2007 - 14:13:42 CDT)
• color atom by stress
  • John Stone (Sat May 21 2011 - 22:55:46 CDT)
  • Shaorui Yang (Sat May 21 2011 - 21:10:17 CDT)
  • Axel Kohlmeyer (Sat May 21 2011 - 16:25:18 CDT)
  • Shaorui Yang (Sat May 21 2011 - 15:23:48 CDT)
• Color atoms
  • Joshua Anderson (Mon Oct 01 2012 - 06:31:58 CDT)
  • John Stone (Sun Sep 30 2012 - 16:49:19 CDT)
  • Andrew Jewett (Sun Sep 30 2012 - 03:00:13 CDT)
  • Ivan Moncayo (Thu Sep 27 2012 - 11:59:32 CDT)
• Color bar
  • Axel Kohlmeyer (Thu Aug 20 2009 - 17:28:26 CDT)
  • Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
• Color bar in VMD
  • Dan Wright (Fri Apr 22 2005 - 16:23:36 CDT)
• color bar problem in VMD
  • Geng (Thu Jun 29 2017 - 17:19:24 CDT)
  • Robin Betz (Thu Jun 29 2017 - 16:16:04 CDT)
  • Geng (Thu Jun 29 2017 - 16:34:57 CDT)
  • Vermaas, Joshua (Thu Jun 29 2017 - 14:10:24 CDT)
  • Geng (Thu Jun 29 2017 - 12:44:11 CDT)
• color by charge (can colors be changed?)
  • Axel Kohlmeyer (Thu May 25 2006 - 05:02:29 CDT)
  • Jeffrey A Tibbitt (Thu May 25 2006 - 01:14:37 CDT)
• color by frame?
  • John Stone (Mon May 07 2007 - 10:09:23 CDT)
  • Axel Kohlmeyer (Mon May 07 2007 - 08:47:16 CDT)
  • andrea spitaleri (Mon May 07 2007 - 04:58:40 CDT)
• color by molecule number
  • Marco Di Gennaro (TME) (Mon Dec 06 2021 - 04:50:41 CST)
• color by Name
  • PaweÅ‚ Wolski (Mon Sep 29 2014 - 04:10:04 CDT)
• Color by position behavior
  • JT (Sun Nov 29 2009 - 08:23:06 CST)
  • Axel Kohlmeyer (Sun Nov 29 2009 - 03:47:08 CST)
  • JT (Sun Nov 29 2009 - 02:59:31 CST)
• color by resid
  • John Stone (Thu Apr 25 2002 - 14:02:30 CDT)
  • Tran Trung Tran (Tue Apr 23 2002 - 18:28:57 CDT)
  • Don Havelberg (Tue Apr 23 2002 - 02:02:23 CDT)
  • Tran Trung Tran (Mon Apr 22 2002 - 23:31:52 CDT)
• Color by velocity (speed?)
  • Axel Kohlmeyer (Wed Jun 16 2010 - 13:01:21 CDT)
  • Ardy Davari (Wed Jun 16 2010 - 12:04:04 CDT)
• Color by volume
  • Peter Freddolino (Sat Sep 30 2006 - 10:41:09 CDT)
  • Jay Shore (Fri Sep 29 2006 - 11:54:42 CDT)
• Color by Volume on an Intel 945GM
  • John Stone (Mon Oct 22 2007 - 10:34:50 CDT)
  • Jeffry D Madura (Sat Oct 20 2007 - 16:22:42 CDT)
  • Axel Kohlmeyer (Sat Oct 20 2007 - 15:44:39 CDT)
  • Jeffry D Madura (Sat Oct 20 2007 - 14:42:07 CDT)
• Color change in VMD
  • Smith, Harper E. (Wed Jul 27 2022 - 10:48:58 CDT)
  • Saikat Pal (Wed Jul 27 2022 - 10:33:12 CDT)
• color change on atoms selected using mouse
  • Axel Kohlmeyer (Thu Dec 09 2010 - 11:04:44 CST)
  • JhonY. I. (Thu Dec 09 2010 - 10:11:35 CST)
• color charmm dcd by kinetic energy
  • Ardy Davari (Tue Jul 06 2010 - 09:30:27 CDT)
  • Bjoern Olausson (Tue Jul 06 2010 - 02:51:24 CDT)
  • Axel Kohlmeyer (Mon Jul 05 2010 - 17:02:53 CDT)
  • Ardy Davari (Mon Jul 05 2010 - 15:59:22 CDT)
• Color code
  • Justin Gullingsrud (Thu Mar 20 2003 - 10:29:29 CST)
  • Rukman Hertadi (Thu Mar 20 2003 - 01:42:37 CST)
• Color code the structure by RMSF values
  • John Stone (Wed Sep 19 2012 - 12:09:56 CDT)
  • Esam Tolba (Wed Sep 19 2012 - 11:40:26 CDT)
• Color Coding by Residue Type
  • Peter (Thu Jul 28 2022 - 09:06:13 CDT)
  • Satyan Sharma (Tue Jul 26 2022 - 04:46:49 CDT)
  • Peter (Mon Jul 25 2022 - 15:28:58 CDT)
• Color error on loading
  • John Stone (Wed Mar 03 2004 - 09:58:20 CST)
  • Olaf Lenz (Wed Mar 03 2004 - 03:12:02 CST)
  • John Stone (Tue Mar 02 2004 - 17:24:45 CST)
  • Josh Ward (Tue Mar 02 2004 - 14:30:51 CST)
• color gradient based on the sequence
  • Hyun (Thu Feb 12 2015 - 17:15:10 CST)
  • John Stone (Thu Feb 12 2015 - 16:02:40 CST)
  • Hyun (Thu Feb 12 2015 - 13:41:01 CST)
• Color of bond betwen atoms with different colors
  • Axel Kohlmeyer (Fri May 16 2008 - 16:35:50 CDT)
  • Alberto Torres (Fri May 16 2008 - 15:35:40 CDT)
• color problem with Ati Fire GL E1
  • Luis Gracia (Fri Mar 05 2004 - 19:46:32 CST)
  • Luis Gracia (Fri Mar 05 2004 - 19:50:20 CST)
  • Benjamin Goldsteen (Wed Mar 03 2004 - 22:23:31 CST)
  • John Stone (Wed Mar 03 2004 - 21:02:04 CST)
  • Luis Gracia (Wed Mar 03 2004 - 16:45:19 CST)
• color problem with tachyon
  • John Stone (Wed Mar 13 2013 - 11:53:23 CDT)
  • Rejwan (Wed Mar 13 2013 - 11:37:43 CDT)
  • John Stone (Tue Mar 12 2013 - 14:21:40 CDT)
  • Rejwan (Tue Mar 12 2013 - 10:36:40 CDT)
• Color problem.
  • Axel Kohlmeyer (Wed May 13 2009 - 17:45:44 CDT)
  • John Stone (Wed May 13 2009 - 16:17:12 CDT)
  • knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
• color protein based on an event during a trajectory
  • Axel Kohlmeyer (Wed Jun 07 2006 - 23:24:40 CDT)
  • Leonardo G. Trabuco (Wed Jun 07 2006 - 22:14:41 CDT)
  • Brian Kidd (Wed Jun 07 2006 - 21:33:39 CDT)
• Color scale bar
  • John Stone (Thu Feb 08 2018 - 14:08:04 CST)
  • Malvika K (Thu Feb 08 2018 - 11:15:46 CST)
• Color Scale Data Range
  • Weiqiang Wang (Tue May 29 2007 - 17:46:31 CDT)
  • Weiqiang Wang (Tue May 29 2007 - 17:08:16 CDT)
  • Axel Kohlmeyer (Mon Feb 27 2006 - 08:20:34 CST)
  • Vlad Cojocaru (Mon Feb 27 2006 - 05:28:18 CST)
  • Vlad Cojocaru (Mon Feb 27 2006 - 05:25:43 CST)
• Color scale data range for coloring by timestep
  • Jérôme Hénin (Mon Jan 21 2013 - 08:25:37 CST)
• color scale definitions with more than three colors?
  • Axel Kohlmeyer (Thu Jul 31 2014 - 13:19:31 CDT)
  • John Stone (Thu Jul 31 2014 - 12:58:37 CDT)
  • Brian Radak (Thu Jul 31 2014 - 12:38:49 CDT)
• color sidechains differently
  • Axel Kohlmeyer (Tue Jun 14 2011 - 22:21:07 CDT)
  • Magnus Andersson (Tue Jun 14 2011 - 21:30:10 CDT)
• Color specific frames with specific colors in a trajectory
  • Josh Vermaas (Sun Aug 02 2020 - 16:44:16 CDT)
  • Ameya Harmalkar (Sat Aug 01 2020 - 17:58:24 CDT)
• Color surfaces by electrostatic potential
  • John Stone (Thu Nov 16 2006 - 17:18:24 CST)
  • Mihaly Mezei (Thu Nov 16 2006 - 17:06:06 CST)
• color the surface with electrostatic potential value
  • Axel Kohlmeyer (Thu Apr 28 2005 - 01:12:24 CDT)
  • Michel Espinoza-Fonseca (Wed Apr 27 2005 - 18:02:31 CDT)
  • Yongcheng Zhou (Wed Apr 27 2005 - 17:12:29 CDT)
• color trajectory using specific values rather than color scale
  • Joshua A. Anderson (Mon Jun 27 2011 - 11:50:44 CDT)
  • Jérôme Hénin (Mon Jun 27 2011 - 11:20:41 CDT)
  • Axel Kohlmeyer (Mon Jun 27 2011 - 10:32:51 CDT)
  • John Stone (Mon Jun 27 2011 - 10:42:31 CDT)
  • Brian Puchala (Mon Jun 27 2011 - 09:55:05 CDT)
• Color Transition in VMD
  • maxim todoru (Sat Nov 13 2021 - 03:30:11 CST)
  • Axel Kohlmeyer (Sun Nov 14 2021 - 08:46:55 CST)
  • maxim todoru (Fri Nov 12 2021 - 22:20:18 CST)
  • maxim todoru (Fri Nov 12 2021 - 20:43:41 CST)
  • Axel Kohlmeyer (Sun Nov 14 2021 - 02:44:41 CST)
  • Axel Kohlmeyer (Sat Nov 13 2021 - 18:42:24 CST)
  • Axel Kohlmeyer (Sat Nov 13 2021 - 16:32:52 CST)
  • maxim todoru (Sat Nov 13 2021 - 15:09:15 CST)
  • maxim todoru (Fri Nov 12 2021 - 15:23:26 CST)
  • John Stone (Tue Nov 09 2021 - 15:59:52 CST)
  • Vermaas, Josh (Sat Nov 06 2021 - 13:22:11 CDT)
  • maxim todoru (Sat Nov 06 2021 - 11:49:34 CDT)
  • Giacomo Fiorin (Sat Nov 06 2021 - 10:30:33 CDT)
  • maxim todoru (Sat Nov 06 2021 - 09:46:26 CDT)
• color update for xyz trajectory
  • John Stone (Thu Mar 12 2009 - 14:57:03 CDT)
  • Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
• Color wheel gradient
  • jonathan (Fri Mar 25 2011 - 09:03:34 CDT)
  • John Stone (Thu Mar 24 2011 - 22:14:38 CDT)
  • Jonathan KHAO (Tue Mar 22 2011 - 12:57:08 CDT)
• color with name
  • Andrew Fenley (Fri Sep 16 2011 - 16:11:17 CDT)
  • John Stone (Fri Sep 16 2011 - 13:32:39 CDT)
  • Yamei (Fri Sep 16 2011 - 11:56:03 CDT)
• color: negative values
  • John Stone (Sat Aug 12 2006 - 14:50:14 CDT)
  • Zu Thur Yew (Sat Aug 12 2006 - 14:30:37 CDT)
• colorid
  • John Stone (Wed Dec 07 2005 - 10:17:58 CST)
  • Luc Moulinier (Wed Dec 07 2005 - 07:27:35 CST)
• coloring
  • Axel Kohlmeyer (Fri Dec 30 2022 - 19:16:49 CST)
  • Fateme Aghaei (Fri Dec 30 2022 - 15:45:45 CST)
• coloring according to charge of residues
  • Giovanni Bellesia (Mon May 12 2008 - 10:58:45 CDT)
  • OZGE ENGIN (Mon May 12 2008 - 10:05:33 CDT)
• coloring atoms based on max bond length; Need help with bond retrieval
  • Vikas Varshney (Tue Oct 16 2012 - 13:37:55 CDT)
  • Vikas Varshney (Tue Oct 16 2012 - 11:51:51 CDT)
  • Axel Kohlmeyer (Tue Oct 16 2012 - 10:33:57 CDT)
  • Vikas Varshney (Tue Oct 16 2012 - 10:11:24 CDT)
  • Axel Kohlmeyer (Mon Oct 15 2012 - 14:12:33 CDT)
  • Vikas Varshney (Mon Oct 15 2012 - 10:53:26 CDT)
• Coloring atoms based on timeframe range?
  • Bjoern Olausson (Fri Apr 23 2010 - 04:01:19 CDT)
  • Nicholas Musolino (Thu Apr 22 2010 - 10:53:08 CDT)
  • Bjoern Olausson (Thu Apr 22 2010 - 10:41:46 CDT)
  • Axel Kohlmeyer (Thu Apr 22 2010 - 10:11:05 CDT)
  • Joseph Bylund (Thu Apr 22 2010 - 10:04:08 CDT)
  • John Stone (Thu Apr 22 2010 - 10:11:43 CDT)
  • Bjoern Olausson (Thu Apr 22 2010 - 08:51:34 CDT)
• Coloring atoms by a general scalar
  • Heidenreich, Joseph David (Thu Jul 02 2009 - 14:17:25 CDT)
  • Axel Kohlmeyer (Wed Jul 01 2009 - 08:12:52 CDT)
  • Pawel Kedzierski (Wed Jul 01 2009 - 04:27:32 CDT)
  • Axel Kohlmeyer (Tue Jun 30 2009 - 12:53:26 CDT)
  • Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
• Coloring based on POS
  • John Stone (Thu Mar 11 2004 - 10:16:19 CST)
  • Justin Gullingsrud (Thu Mar 11 2004 - 08:18:16 CST)
  • Justin Gullingsrud (Thu Mar 11 2004 - 08:23:31 CST)
  • DongHoon Chung (Thu Mar 11 2004 - 03:11:40 CST)
• Coloring bonds in VMD
  • John Stone (Mon Oct 08 2012 - 12:42:49 CDT)
  • Mingchao Wang (Mon Oct 08 2012 - 01:24:21 CDT)
• coloring bonds on the same segments differently from those between segments
  • lam nguyen (Fri Oct 21 2011 - 17:06:35 CDT)
  • Joseph Bylund (Thu Oct 20 2011 - 20:13:59 CDT)
  • Axel Kohlmeyer (Thu Oct 20 2011 - 20:10:23 CDT)
  • lam nguyen (Thu Oct 20 2011 - 19:07:42 CDT)
• coloring by atom type
  • Rogan Carr (Sat Apr 18 2009 - 16:53:39 CDT)
  • Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
• Coloring by BETA not updating per frame
  • David Kingsbury (Sun Jul 24 2005 - 23:39:25 CDT)
  • David Kingsbury (Sun Jul 24 2005 - 20:45:47 CDT)
  • Axel Kohlmeyer (Sun Jul 24 2005 - 02:29:44 CDT)
  • David Kingsbury (Sat Jul 23 2005 - 11:16:09 CDT)
• coloring by charge
  • John Stone (Wed Oct 29 2003 - 13:46:01 CST)
  • suzie.k.hight.1 (Wed Oct 29 2003 - 00:26:42 CST)
• coloring by difference in beta factors
  • Axel Kohlmeyer (Tue Dec 01 2009 - 07:30:43 CST)
  • cubellis_at_unina.it (Tue Dec 01 2009 - 06:25:28 CST)
• coloring by gradient
  • Rodolfo Pereyra (Thu Apr 28 2011 - 15:36:51 CDT)
• Coloring by RMSD during trajectory
  • Joseph Bylund (Wed Feb 01 2012 - 23:49:19 CST)
  • John Stone (Wed Feb 01 2012 - 23:14:38 CST)
  • John Stone (Thu Feb 02 2012 - 00:00:15 CST)
  • Joseph Bylund (Fri Jan 06 2012 - 11:40:27 CST)
• Coloring by type?
  • Akiyama, Jotaro (Fri Nov 12 2004 - 02:45:10 CST)
  • John Stone (Thu Nov 11 2004 - 21:51:00 CST)
  • Akiyama, Jotaro (Thu Nov 11 2004 - 18:56:02 CST)
  • John Stone (Thu Nov 11 2004 - 10:57:55 CST)
  • Akiyama, Jotaro (Mon Nov 08 2004 - 03:06:34 CST)
• Coloring different isosurfaces with user-defined colors
  • Ellis, Matthew (Sat Feb 02 2019 - 04:38:32 CST)
• coloring different polymers with different (random) colors
  • Valerio Sorichetti (Mon Jul 10 2017 - 10:32:44 CDT)
  • Axel Kohlmeyer (Mon Jul 10 2017 - 09:46:33 CDT)
  • Valerio Sorichetti (Mon Jul 10 2017 - 09:05:57 CDT)
  • Tim Moore (Mon Jul 10 2017 - 08:44:41 CDT)
  • Valerio Sorichetti (Mon Jul 10 2017 - 04:13:03 CDT)
• coloring HIE, HIP, HID: sorry ... I got it
  • Vlad Cojocaru (Mon Oct 30 2006 - 07:12:12 CST)
• Coloring lots of Groups
  • Benjamin Kaduk (Thu Dec 06 2012 - 13:48:37 CST)
  • Doran Bennett (Thu Dec 06 2012 - 10:25:06 CST)
• coloring method
  • John Stone (Tue Dec 06 2005 - 16:40:15 CST)
  • Guanglei Cui (Tue Dec 06 2005 - 12:48:55 CST)
  • Fei Xu (Thu Feb 28 2002 - 15:44:11 CST)
• coloring method User
  • John Stone (Mon Mar 22 2004 - 11:45:35 CST)
  • Cosmin ROMAN (Mon Mar 22 2004 - 11:56:03 CST)
  • John Stone (Mon Mar 22 2004 - 11:18:35 CST)
  • Cosmin ROMAN (Sun Mar 21 2004 - 09:05:23 CST)
• coloring method User for graphics like tubes?
  • John Stone (Mon Apr 30 2018 - 22:07:41 CDT)
  • Vermaas, Joshua (Mon Apr 30 2018 - 08:06:49 CDT)
  • Daniel Möller (Mon Apr 30 2018 - 04:39:25 CDT)
• coloring method)
  • John Stone (Fri Mar 01 2002 - 15:01:54 CST)
• coloring method: user
  • John Stone (Fri Jun 20 2003 - 10:03:15 CDT)
  • Jan Saam (Fri Jun 20 2003 - 06:56:26 CDT)
• Coloring mols by carbon only
  • John Stone (Mon Jul 09 2001 - 10:53:28 CDT)
  • Niklas.Blomberg_at_astrazeneca.com (Mon Jul 09 2001 - 04:09:32 CDT)
• coloring names
  • John Stone (Fri Mar 23 2007 - 14:01:05 CDT)
  • Fred Moore (Fri Mar 23 2007 - 13:24:37 CDT)
• Coloring of a trajectory with atom types more than 9
  • Amin Koochaki (Thu Mar 29 2018 - 14:58:09 CDT)
  • Vermaas, Joshua (Thu Mar 29 2018 - 12:19:41 CDT)
  • Amin Koochaki (Thu Mar 29 2018 - 05:12:36 CDT)
• coloring of an item created by canvas
  • Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
• Coloring of atoms/molecules
  • John Stone (Fri Nov 01 2002 - 21:18:42 CST)
  • #WONG CHEE HOW# (Thu Oct 31 2002 - 23:24:13 CST)
• Coloring of basins
  • John Stone (Mon Apr 06 2015 - 11:36:37 CDT)
  • Maria Ivanova (Tue Mar 24 2015 - 19:48:10 CDT)
• coloring of trajectory
  • John Stone (Thu Mar 11 2004 - 14:29:47 CST)
  • Florian Barth (Thu Mar 11 2004 - 11:56:38 CST)
  • John Stone (Wed Mar 10 2004 - 11:19:55 CST)
  • Florian Barth (Wed Mar 10 2004 - 07:10:27 CST)
• Coloring particular atom with particular index
  • Töre Han Balta (Thu Dec 08 2011 - 16:15:26 CST)
  • Ajasja LjubetiÄ� (Wed Dec 07 2011 - 12:57:42 CST)
  • Töre Han Balta (Wed Dec 07 2011 - 11:51:00 CST)
• coloring residues with VMD
  • John Stone (Wed Nov 29 2006 - 14:55:07 CST)
  • christopher (Wed Nov 29 2006 - 14:41:37 CST)
• Coloring rings with paperchain
  • Xiang Gao (Tue Oct 19 2021 - 02:33:01 CDT)
  • Vermaas, Josh (Mon Oct 18 2021 - 19:23:39 CDT)
  • Xiang Gao (Mon Oct 18 2021 - 17:24:08 CDT)
  • John Stone (Mon Oct 18 2021 - 17:05:36 CDT)
  • Xiang Gao (Mon Oct 18 2021 - 16:47:56 CDT)
• coloring scheme in "VolumeSlice"
  • Walter Huang (Sat Jan 17 2015 - 21:08:02 CST)
• Coloring Scheme Spectrum
  • McGuire, Kelly (Mon May 07 2018 - 11:57:26 CDT)
  • Andrew Dalke (Mon May 07 2018 - 11:10:24 CDT)
  • McGuire, Kelly (Mon May 07 2018 - 09:47:44 CDT)
  • Giacomo Fiorin (Mon May 07 2018 - 07:33:02 CDT)
  • McGuire, Kelly (Sun May 06 2018 - 23:34:32 CDT)
  • John Stone (Sun May 06 2018 - 21:20:13 CDT)
  • John Stone (Sun May 06 2018 - 21:13:55 CDT)
  • McGuire, Kelly (Sat May 05 2018 - 09:49:09 CDT)
• Coloring Sections of Peptides
  • Justin Gullingsrud (Wed May 16 2001 - 15:58:26 CDT)
  • B. Bennion (Wed May 16 2001 - 15:26:01 CDT)
• coloring selected chains and residues
  • Axel Kohlmeyer (Mon Jul 30 2007 - 19:00:55 CDT)
  • karan uppal (Mon Jul 30 2007 - 18:58:05 CDT)
• coloring selection
  • John Stone (Mon Apr 26 2004 - 18:27:50 CDT)
  • Ioana Cozmuta (Mon Apr 26 2004 - 15:19:25 CDT)
• coloring surface by volume
  • John Stone (Fri Sep 02 2005 - 17:12:18 CDT)
  • Dan Strahs (Fri Aug 26 2005 - 20:05:55 CDT)
• coloring trajectory depending on coordination number
  • Mgr. Lubos Vrbka (Thu Apr 27 2006 - 05:06:46 CDT)
  • Mgr. Lubos Vrbka (Sun Dec 18 2005 - 08:24:02 CST)
  • John Stone (Fri Dec 09 2005 - 10:57:18 CST)
  • Mgr. Lubos Vrbka (Fri Dec 09 2005 - 10:41:37 CST)
• coloring waters
  • caldwell_at_heimdal.compchem.ucsf.edu (Fri Jun 20 2003 - 12:06:32 CDT)
  • John Stone (Thu Jun 19 2003 - 19:50:02 CDT)
  • caldwell_at_heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 18:25:04 CDT)
  • Sanjeev B.S. (Thu Jun 19 2003 - 14:55:14 CDT)
  • caldwell_at_heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 12:51:05 CDT)
• coloring way in a volume slice
  • John Stone (Fri Mar 11 2005 - 17:17:37 CST)
  • John Stone (Sun Mar 06 2005 - 21:36:34 CST)
  • YAMAZAKI Takeshi (Fri Mar 04 2005 - 18:26:33 CST)
• Coloring with an XYZ file
  • John Stone (Wed May 05 2004 - 01:18:01 CDT)
  • Axel Kohlmeyer (Wed May 05 2004 - 01:28:00 CDT)
  • Edward J. Smiley Jr. (Tue May 04 2004 - 15:25:50 CDT)
• coloring.tlc script
  • John Stone (Fri Jul 09 2004 - 16:48:29 CDT)
• Coloring/material of ply files
  • Bart Bruininks (Tue Nov 15 2022 - 09:29:59 CST)
• colormaps available for color by volume
  • Thomas Sommerfeld (Fri Sep 20 2019 - 15:01:11 CDT)
  • John Stone (Fri Sep 20 2019 - 08:57:18 CDT)
  • John Stone (Thu Sep 19 2019 - 09:37:44 CDT)
  • Thomas Sommerfeld (Thu Sep 19 2019 - 09:26:14 CDT)
• colors
  • John Stone (Thu Mar 22 2007 - 10:00:06 CDT)
  • Luc Moulinier (Thu Mar 22 2007 - 03:55:26 CDT)
• colors changed in animation
  • yifat b (Tue Aug 26 2003 - 05:25:18 CDT)
  • John Stone (Mon Aug 25 2003 - 10:32:47 CDT)
  • yifat b (Mon Aug 25 2003 - 10:00:41 CDT)
• Colors in VMd graphics
  • John Stone (Mon Oct 19 2020 - 14:38:45 CDT)
  • Remya Ann (Sun Oct 18 2020 - 05:37:25 CDT)
  • Remya Ann (Sun Oct 18 2020 - 02:36:33 CDT)
  • Ashar Malik (Sat Oct 17 2020 - 22:22:49 CDT)
  • Remya Ann (Sat Oct 17 2020 - 13:46:52 CDT)
• Colour coordinating atoms in a trajectory by Coordination Number
  • Samuel Jobbins (Mon Mar 30 2015 - 11:28:54 CDT)
  • Josh Vermaas (Mon Mar 30 2015 - 11:14:53 CDT)
  • Axel Kohlmeyer (Mon Mar 30 2015 - 10:59:18 CDT)
  • Samuel Jobbins (Mon Mar 30 2015 - 10:13:00 CDT)
  • Axel Kohlmeyer (Thu Mar 26 2015 - 12:08:48 CDT)
  • Josh Vermaas (Thu Mar 26 2015 - 12:12:29 CDT)
  • Samuel Jobbins (Thu Mar 26 2015 - 10:57:51 CDT)
• colour residues
  • Eric H. Lee (Mon Oct 12 2009 - 21:31:18 CDT)
  • Leonardo Trabuco (Mon Oct 12 2009 - 18:56:31 CDT)
  • Axel Kohlmeyer (Mon Oct 12 2009 - 19:05:13 CDT)
  • Eric H. Lee (Mon Oct 12 2009 - 18:26:11 CDT)
  • Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
• coloured surface
  • Ivana (Sat May 23 2020 - 12:51:01 CDT)
  • John Stone (Sat May 23 2020 - 02:09:17 CDT)
  • Ivana (Sun May 03 2020 - 11:49:03 CDT)
• Colouring
  • Justin Gullingsrud (Wed Jun 18 2003 - 09:22:42 CDT)
  • #WONG CHEE HOW# (Wed Jun 18 2003 - 01:02:39 CDT)
• Colouring Atoms according to the centro-symmetric parameter
  • Axel Kohlmeyer (Thu Mar 01 2007 - 13:45:36 CST)
  • Epiphaniou, Nicholas (Thu Mar 01 2007 - 12:59:00 CST)
• Colouring atoms according to their q4 or q6 values
  • Axel Kohlmeyer (Tue Jun 23 2015 - 06:53:10 CDT)
  • Kannan Ridings (Tue Jun 23 2015 - 01:12:31 CDT)
• Colouring atoms individually
  • John Stone (Mon Oct 03 2016 - 15:32:26 CDT)
  • Vermaas, Joshua (Fri Sep 30 2016 - 09:53:41 CDT)
  • Albers, Thomas (Thu Sep 29 2016 - 16:31:24 CDT)
• Colouring atoms named with the same first letter
  • Jennifer Williams (Tue Apr 20 2010 - 10:13:04 CDT)
  • John Stone (Fri Apr 16 2010 - 16:42:22 CDT)
  • Joshua Anderson (Fri Apr 16 2010 - 12:25:47 CDT)
  • Axel Kohlmeyer (Fri Apr 16 2010 - 12:03:24 CDT)
  • Joshua Anderson (Fri Apr 16 2010 - 11:09:23 CDT)
  • Jennifer Williams (Fri Apr 16 2010 - 08:15:07 CDT)
• Colouring by velocity component in VMD
  • Axel Kohlmeyer (Mon Oct 29 2012 - 07:18:10 CDT)
  • Michael Doig (Mon Oct 29 2012 - 05:20:27 CDT)
• Colouring rings in paperchain
  • gargiulo (Wed Feb 27 2013 - 02:52:53 CST)
  • John Stone (Tue Feb 26 2013 - 16:19:28 CST)
  • gargiulo (Wed Feb 06 2013 - 09:04:01 CST)
• colvars module
  • Stefano Guglielmo (Mon Jan 30 2017 - 17:26:38 CST)
  • Stefano Guglielmo (Mon Jan 30 2017 - 16:05:23 CST)
  • Stefano Guglielmo (Mon Jan 30 2017 - 09:06:14 CST)
  • Jérôme Hénin (Mon Jan 30 2017 - 07:13:49 CST)
  • Stefano Guglielmo (Sun Jan 29 2017 - 17:40:53 CST)
• Colvars module doesn't work
  • Vermaas, Joshua (Fri Jan 26 2018 - 17:39:32 CST)
  • Vermaas, Joshua (Fri Jan 26 2018 - 15:14:46 CST)
  • Giacomo Fiorin (Fri Jan 26 2018 - 14:58:35 CST)
  • Michael Morin (Fri Jan 26 2018 - 14:11:29 CST)
• colvars problem - different values in VMD and NAMD
  • Laura Joana (Wed Apr 20 2016 - 09:53:13 CDT)
  • Laura Joana (Tue Apr 19 2016 - 04:17:09 CDT)
  • Laura Joana (Mon Apr 18 2016 - 09:44:06 CDT)
  • Laura Joana (Mon Apr 18 2016 - 09:05:44 CDT)
  • Laura Joana (Mon Apr 18 2016 - 08:31:40 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 08:40:03 CDT)
  • Laura Joana (Mon Apr 18 2016 - 08:24:25 CDT)
  • Laura Joana (Mon Apr 18 2016 - 07:53:44 CDT)
  • Laura Joana (Mon Apr 18 2016 - 07:52:01 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 07:40:59 CDT)
  • Laura Joana (Mon Apr 18 2016 - 07:36:54 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 07:20:25 CDT)
  • Laura Joana (Sat Apr 16 2016 - 07:34:20 CDT)
  • Laura Joana (Sat Apr 16 2016 - 05:16:22 CDT)
  • John Stone (Fri Apr 15 2016 - 12:22:00 CDT)
  • Jérôme Hénin (Fri Apr 15 2016 - 11:50:32 CDT)
  • Philippe Bopp (Fri Apr 15 2016 - 11:29:02 CDT)
  • Jérôme Hénin (Fri Apr 15 2016 - 09:50:05 CDT)
  • Karteek Kumar (Fri Apr 15 2016 - 09:50:19 CDT)
  • Laura Joana (Fri Apr 15 2016 - 09:19:09 CDT)
• Combination of bigdcd.tcl and topotools plugin
  • Sofya Lushchekina (Wed Dec 04 2013 - 10:34:47 CST)
• combine .pdb files to make movie
  • Sarah MohammadiNejad (Fri Jul 19 2013 - 07:53:01 CDT)
  • Axel Kohlmeyer (Fri Jul 19 2013 - 07:25:37 CDT)
  • Sarah MohammadiNejad (Fri Jul 19 2013 - 06:35:57 CDT)
• Combine Drawing Methods - Cartoon and Disulfide Bonds
  • Chang, Christopher (Tue Jun 14 2005 - 18:43:48 CDT)
  • Paul R Brenner (Tue Jun 14 2005 - 17:00:12 CDT)
• combine together two PBD/PSF files
  • Dr. Luis Rosales Leon (Wed Nov 07 2007 - 18:50:50 CST)
  • Alessio Alexiadis (Wed Nov 07 2007 - 07:38:42 CST)
• Combine volmap occupancy maps
  • John Stone (Wed Jul 17 2013 - 09:50:33 CDT)
  • Axel Kohlmeyer (Wed Jul 17 2013 - 02:31:04 CDT)
  • Andrei Tudor (Mon Jul 15 2013 - 14:44:54 CDT)
• combine.tcl
  • Axel Kohlmeyer (Mon Dec 17 2012 - 10:30:47 CST)
  • yp sun (Mon Dec 17 2012 - 08:52:24 CST)
  • John Stone (Wed Nov 22 2006 - 12:12:14 CST)
  • annalisa_at_biotec.tu-dresden.de (Tue Nov 21 2006 - 15:06:50 CST)
• combine.tcl error
  • Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
  • John Stone (Wed Oct 17 2007 - 22:11:59 CDT)
  • Francesco Pietra (Sun Oct 14 2007 - 03:23:23 CDT)
• combine.tcl membrane plugin
  • Axel Kohlmeyer (Thu Nov 15 2007 - 22:47:21 CST)
  • Francesco Pietra (Thu Nov 15 2007 - 09:50:36 CST)
  • Peter Freddolino (Thu Nov 15 2007 - 09:44:00 CST)
  • Axel Kohlmeyer (Thu Nov 15 2007 - 03:33:31 CST)
  • Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
  • Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
  • Francesco Pietra (Wed Nov 14 2007 - 12:05:12 CST)
• Combined "Within" atom selection
  • John Stone (Tue Oct 12 2010 - 14:59:44 CDT)
  • jonathan (Mon Oct 11 2010 - 11:59:08 CDT)
• Combining fragments for parameterization
  • Daniel Fellner (Sat Oct 31 2020 - 03:15:46 CDT)
  • Emma Wu (Fri Oct 30 2020 - 23:47:35 CDT)
  • Daniel Fellner (Thu Oct 15 2020 - 01:05:34 CDT)
  • Emma Wu (Thu Oct 15 2020 - 00:50:30 CDT)
• Combining multiple psf into one for collagen protein
  • SONAL GAHLAWAT (Mon Apr 17 2023 - 11:42:20 CDT)
• Combining PDB/PSF of Protein and CNT
  • Ajasja LjubetiÄ� (Wed Jul 02 2014 - 07:03:26 CDT)
  • Adam Kells (Wed Jul 02 2014 - 04:15:55 CDT)
• command args to MSMS in VMD
  • John Stone (Tue Nov 05 2002 - 10:27:26 CST)
• command for volume slice?
  • John Stone (Wed May 11 2011 - 11:02:12 CDT)
  • Olaf Lenz (Wed May 11 2011 - 09:11:32 CDT)
  • Jennifer Williams (Wed May 11 2011 - 08:16:25 CDT)
• Command line argument
  • Axel Kohlmeyer (Wed Mar 25 2009 - 10:57:22 CDT)
  • Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
• command line dcd to trr?
  • Axel Kohlmeyer (Fri Jul 06 2007 - 08:26:37 CDT)
  • hori koshii (Thu Jul 05 2007 - 20:46:14 CDT)
• Command line for thickness parameter
  • Cun Zhang (Tue Aug 09 2011 - 07:56:27 CDT)
  • Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 06:00:29 CDT)
  • Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 03:46:46 CDT)
• command line options for video in vmd
  • Remya Ann (Mon Aug 24 2020 - 02:05:49 CDT)
• command line rep creation
  • Salomon Turgman Cohen (Wed Apr 17 2013 - 12:43:08 CDT)
  • Martin, Erik W (Wed Apr 17 2013 - 11:14:26 CDT)
• Command line representation
  • Axel Kohlmeyer (Mon Oct 29 2012 - 07:51:16 CDT)
  • Aronica, Pietro (Mon Oct 29 2012 - 06:57:30 CDT)
• Command line troubles
  • Axel Kohlmeyer (Sat Nov 11 2006 - 17:48:00 CST)
  • Pavan Ghatty (Sat Nov 11 2006 - 16:11:46 CST)
• command measure inertia
  • Vermaas, Josh (Sat Feb 26 2022 - 11:57:31 CST)
  • Alessandro Ruda (Sat Feb 26 2022 - 09:59:14 CST)
• Command not found Error
  • PaweÅ‚ KÄ™dzierski (Fri Feb 15 2013 - 02:03:46 CST)
  • Allison Rossetto (Thu Feb 14 2013 - 11:55:58 CST)
  • John Stone (Thu Feb 14 2013 - 11:05:31 CST)
  • Allison Rossetto (Mon Feb 11 2013 - 16:02:50 CST)
• Command to change background to gradient
  • Axel Kohlmeyer (Fri Nov 30 2007 - 06:15:44 CST)
  • TRINH Minh hieu (Fri Nov 30 2007 - 04:55:27 CST)
• Command to save visualization state.
  • John Stone (Wed Mar 21 2018 - 10:27:25 CDT)
  • sperez14_at_us.es (Wed Mar 21 2018 - 05:47:38 CDT)
• Commandline file processed before vmdrc read in
  • Stefan Kuczera (Wed Jan 25 2017 - 07:35:34 CST)
  • Stefan Kuczera (Tue Jan 24 2017 - 09:47:49 CST)
• Commands runs manually but not as a script
  • CHARLES MCCALLUM (Fri Nov 24 2023 - 19:23:05 CST)
  • Diego Gomes (Tue Nov 07 2023 - 09:19:01 CST)
  • Bill McIntyre (Fri Nov 03 2023 - 10:58:11 CDT)
• Compare "measure rgyr" to SAXS
  • Martin, Erik W (Tue Jun 04 2013 - 14:37:28 CDT)
• Comparing distance.tcl/bigdcd.tcl with resid/CA vs index
  • Francesco Pietra (Thu Jun 04 2015 - 12:00:24 CDT)
  • Josh Vermaas (Thu Jun 04 2015 - 10:46:12 CDT)
  • Francesco Pietra (Thu Jun 04 2015 - 09:32:47 CDT)
• Comparing Structures with Multiseq and Qres
  • Anurag Sethi (Wed Apr 16 2014 - 10:41:02 CDT)
  • Anurag Sethi (Mon Apr 07 2014 - 19:37:48 CDT)
  • Donald Karr (Thu Apr 03 2014 - 10:33:55 CDT)
• Compatibility with Orcad (PSpice) ?
  • John Stone (Sun Sep 19 2010 - 19:35:12 CDT)
  • A. M. Carmen Pérez (Thu Sep 16 2010 - 05:06:29 CDT)
• Compilation
  • John Stone (Thu May 25 2006 - 14:35:31 CDT)
  • John Stone (Thu May 25 2006 - 14:31:03 CDT)
  • John Stone (Thu May 25 2006 - 14:24:57 CDT)
  • Axel Kohlmeyer (Thu May 25 2006 - 05:20:42 CDT)
  • angel (Wed May 24 2006 - 17:44:39 CDT)
• Compilation and installation of VMD on Mac OS Catalina
  • fabio trovato (Sun Nov 03 2019 - 05:36:37 CST)
• compilation error
  • John Stone (Fri May 10 2002 - 10:31:05 CDT)
  • Todd J. Furlong (Fri May 10 2002 - 10:13:56 CDT)
  • Tommy Wang (Fri May 10 2002 - 07:52:24 CDT)
• Compilation error: stride_LINUXAMD64', surf_LINUXAMD64, tachyon_LINUXAMD64 : No such file or directory
  • Axel Kohlmeyer (Thu Apr 22 2021 - 15:34:04 CDT)
  • Chintapalli, Sree vamsee (Thu Apr 22 2021 - 14:45:29 CDT)
• compilation from source: first attempt failed
  • Bogdan Costescu (Fri Dec 09 2005 - 10:30:07 CST)
  • John Stone (Fri Dec 09 2005 - 09:46:08 CST)
  • Vlad Cojocaru (Fri Dec 09 2005 - 08:01:34 CST)
• compilation from source: make error message
  • John Stone (Mon Dec 12 2005 - 15:36:49 CST)
  • Cojocaru,Vlad (Mon Dec 12 2005 - 15:06:08 CST)
  • John Stone (Mon Dec 12 2005 - 10:02:59 CST)
  • Bogdan Costescu (Mon Dec 12 2005 - 06:04:24 CST)
  • Vlad Cojocaru (Mon Dec 12 2005 - 03:59:36 CST)
• Compilation issues with tcl.h
  • John Stone (Tue Mar 25 2003 - 22:33:02 CST)
  • Paul Darwen (Tue Mar 25 2003 - 21:36:27 CST)
• compilation of vmd 1.8.7 source
  • John Stone (Tue Jul 20 2010 - 10:17:44 CDT)
  • Ian Stokes-Rees (Tue Jul 20 2010 - 10:07:45 CDT)
  • John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
  • Vlad Cojocaru (Tue Jul 20 2010 - 09:22:15 CDT)
• compilation of vmd from source on armv8 RK3399 processor
  • Pawel Kedzierski (Tue Feb 11 2020 - 06:33:11 CST)
  • Pawel Kedzierski (Fri Feb 07 2020 - 02:19:13 CST)
  • John Stone (Wed Feb 05 2020 - 15:22:41 CST)
  • Pawel Kedzierski (Tue Feb 04 2020 - 03:01:29 CST)
  • Pawel Kedzierski (Sat Feb 01 2020 - 05:06:47 CST)
  • Joey Gehring (Fri Jan 31 2020 - 22:54:40 CST)
• compilation problem using vmd1.8 alpha
  • John Stone (Thu May 30 2002 - 20:11:30 CDT)
  • Tommy Wang (Thu May 30 2002 - 19:52:15 CDT)
• Compilation propblem
  • John Stone (Mon Jun 19 2006 - 13:19:16 CDT)
  • angel (Mon Jun 19 2006 - 12:26:52 CDT)
• compilation with python 2.5 and file permissions from the CVS repository
  • John Stone (Mon Apr 14 2008 - 10:26:18 CDT)
  • Vlad Cojocaru (Mon Apr 14 2008 - 05:43:00 CDT)
  • Axel Kohlmeyer (Mon Apr 14 2008 - 05:16:19 CDT)
  • Vlad Cojocaru (Mon Apr 14 2008 - 05:16:25 CDT)
  • Vlad Cojocaru (Mon Apr 14 2008 - 03:26:35 CDT)
  • Axel Kohlmeyer (Sun Apr 13 2008 - 15:00:12 CDT)
  • John Stone (Sun Apr 13 2008 - 15:29:57 CDT)
  • Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
  • Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
  • Cojocaru,Vlad (Sun Apr 13 2008 - 12:24:52 CDT)
• compilation: forgot to say about Python
  • Vlad Cojocaru (Fri Dec 09 2005 - 08:06:39 CST)
• Compile / Configure VMD with the Oculus Rift DK2
  • Jan Janssen (Thu Nov 03 2016 - 02:42:43 CDT)
• compile a plugin source code
  • dbg (Fri Apr 13 2007 - 06:29:59 CDT)
• compile catdcd.c
  • Sichun Yang (Fri Apr 23 2004 - 19:06:04 CDT)
  • Sichun Yang (Fri Apr 23 2004 - 18:38:56 CDT)
• compile error
  • Axel Kohlmeyer (Tue May 18 2010 - 06:27:22 CDT)
  • Liu Shiyong (Tue May 18 2010 - 04:40:12 CDT)
• Compile from Source Crashes 5/11/04
  • John Stone (Wed May 12 2004 - 18:41:32 CDT)
  • Brian Bennion (Tue May 11 2004 - 16:26:33 CDT)
  • Brian Bennion (Tue May 11 2004 - 11:22:20 CDT)
  • Stewart Dickson (Tue May 11 2004 - 09:51:09 CDT)
• Compile of OpenGL shader vmdsphere failed
  • John Stone (Tue May 02 2006 - 10:26:41 CDT)
  • Marc Petitmermet (Tue May 02 2006 - 05:45:03 CDT)
• compile problem for VMD1.8.6: OpenGLRenderer.C
  • Axel Kohlmeyer (Sat Mar 08 2008 - 20:51:50 CST)
  • Dan Strahs (Sat Mar 08 2008 - 20:17:23 CST)
• Compile VMD
  • saeed (Thu Mar 06 2014 - 06:37:06 CST)
  • John Stone (Wed Mar 05 2014 - 10:33:35 CST)
  • saeed (Wed Mar 05 2014 - 09:52:59 CST)
  • Knut Jørgen Bjuland (Wed Sep 22 2010 - 11:15:13 CDT)
  • Cun Zhang (Thu Sep 16 2010 - 20:25:45 CDT)
  • Axel Kohlmeyer (Wed Sep 15 2010 - 13:09:28 CDT)
  • Knut Jørgen Bjuland (Wed Sep 15 2010 - 11:54:17 CDT)
• compile VMD 1.9 with FLTK 1.3
  • Axel Kohlmeyer (Mon Nov 21 2011 - 08:37:31 CST)
  • Vlad Cojocaru (Mon Nov 21 2011 - 07:45:24 CST)
  • Vlad Cojocaru (Mon Nov 21 2011 - 06:37:19 CST)
• compile vmd for windows 10
  • John Stone (Wed Oct 14 2020 - 08:58:48 CDT)
  • omid gh (Wed Oct 14 2020 - 05:35:42 CDT)
  • John Stone (Tue Oct 13 2020 - 14:36:56 CDT)
  • Axel Kohlmeyer (Tue Sep 22 2020 - 09:07:27 CDT)
  • Raman Preet Singh (Tue Sep 22 2020 - 07:33:20 CDT)
  • omid gh (Tue Sep 22 2020 - 06:43:36 CDT)
• compile VMD on freebsd 4.8
  • brad noyes (Tue Sep 09 2003 - 21:05:44 CDT)
  • John Stone (Tue Sep 09 2003 - 19:43:33 CDT)
  • brad noyes (Tue Sep 09 2003 - 16:43:10 CDT)
  • tscheng_at_ic.sunysb.edu (Fri Jul 25 2003 - 07:56:03 CDT)
  • brad noyes (Thu Jul 24 2003 - 17:54:42 CDT)
  • tscheng_at_ic.sunysb.edu (Thu Jul 24 2003 - 08:00:42 CDT)
  • brad noyes (Wed Jul 23 2003 - 20:59:27 CDT)
  • Tsu-Fan Cheng (Wed Jul 23 2003 - 14:43:26 CDT)
  • John Stone (Wed Jul 23 2003 - 14:27:04 CDT)
  • Tsu-Fan Cheng (Wed Jul 23 2003 - 14:23:12 CDT)
• compile VMD with cuda 6.5.14
  • Vlad Cojocaru (Thu Oct 23 2014 - 05:33:43 CDT)
  • Vlad Cojocaru (Thu Oct 23 2014 - 04:47:31 CDT)
  • John Stone (Wed Oct 22 2014 - 11:28:35 CDT)
  • Vlad Cojocaru (Wed Oct 22 2014 - 09:39:04 CDT)
• compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory
  • Chris Taylor (Fri Jul 26 2024 - 22:11:53 CDT)
  • Chris Taylor (Fri Jul 26 2024 - 22:15:58 CDT)
  • Vermaas, Josh (Fri Jul 26 2024 - 10:21:01 CDT)
  • Diego Gomes (Fri Jul 26 2024 - 09:31:43 CDT)
  • Chris Taylor (Fri Jul 26 2024 - 00:22:45 CDT)
• compile windows binary in linux
  • Axel Kohlmeyer (Mon Sep 13 2010 - 15:13:13 CDT)
  • John Stone (Mon Sep 13 2010 - 14:28:01 CDT)
  • CLEMENTS, ROBERT (Mon Sep 13 2010 - 14:17:51 CDT)
• compiled failed
  • Axel Kohlmeyer (Mon Nov 26 2012 - 15:41:09 CST)
  • Albert (Mon Nov 26 2012 - 12:16:28 CST)
• Compiled version for MacOSX with non-standard options
  • John Stone (Wed Apr 23 2008 - 23:45:05 CDT)
  • Marc Baaden (Fri Apr 18 2008 - 14:21:30 CDT)
  • John Stone (Fri Apr 18 2008 - 12:55:49 CDT)
  • Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
  • John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
  • Delalande (Thu Apr 17 2008 - 08:37:14 CDT)
• Compiling 64bit VMD
  • Nima Nouri (Wed Feb 26 2014 - 03:15:31 CST)
• Compiling CATDCD and VMD plugins on AIX5.2
  • Fiona Reid (Thu Oct 20 2005 - 10:44:32 CDT)
  • Fiona Reid (Thu Oct 20 2005 - 04:13:27 CDT)
• Compiling CUDAMarchingCubes.cu build error
  • Chris Taylor (Thu Jul 25 2024 - 23:08:47 CDT)
  • Josh Vermaas (Thu Jul 25 2024 - 08:23:05 CDT)
  • Chris Taylor (Wed Jul 24 2024 - 20:14:04 CDT)
  • Vermaas, Josh (Wed Jul 24 2024 - 09:57:02 CDT)
  • Chris Taylor (Tue Jul 23 2024 - 20:02:18 CDT)
  • Vermaas, Josh (Mon Jul 22 2024 - 20:16:50 CDT)
  • Chris Taylor (Sun Jul 21 2024 - 20:53:43 CDT)
• Compiling Fortran bindings for the VMD molfile plugins
  • John Stone (Thu Mar 03 2011 - 13:28:03 CST)
  • John Stone (Wed Mar 02 2011 - 12:46:57 CST)
  • Susana Tomasio (Wed Mar 02 2011 - 10:14:31 CST)
  • John Stone (Wed Mar 02 2011 - 10:07:35 CST)
  • Susana Tomasio (Wed Mar 02 2011 - 09:40:13 CST)
  • John Stone (Tue Mar 01 2011 - 12:32:51 CST)
  • Axel Kohlmeyer (Tue Mar 01 2011 - 12:33:03 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 11:50:03 CST)
  • Axel Kohlmeyer (Tue Mar 01 2011 - 11:23:36 CST)
  • John Stone (Tue Mar 01 2011 - 11:28:30 CST)
  • John Stone (Tue Mar 01 2011 - 10:54:55 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 10:53:49 CST)
  • John Stone (Tue Mar 01 2011 - 10:38:20 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
  • John Stone (Tue Mar 01 2011 - 10:24:32 CST)
  • Susana Tomasio (Tue Mar 01 2011 - 10:16:18 CST)
• Compiling from source on Mac OS X 10.5
  • John Stone (Thu Jul 17 2008 - 17:04:38 CDT)
  • Axel Kohlmeyer (Fri Jun 27 2008 - 14:23:44 CDT)
  • Axel Kohlmeyer (Fri Jun 27 2008 - 13:54:36 CDT)
  • Marylou Kunkle (Fri Jun 27 2008 - 13:29:37 CDT)
  • Marylou Kunkle (Fri Jun 27 2008 - 11:12:37 CDT)
• Compiling NAMD from SRC: Tungsten@NCSA
  • John Stone (Fri Sep 10 2004 - 20:16:25 CDT)
  • Vani Krishna (Fri Sep 10 2004 - 19:54:55 CDT)
• compiling on LINUXAMD64 problem
  • Axel Kohlmeyer (Sun Apr 17 2011 - 11:16:56 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 09:20:16 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 08:51:28 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 08:34:54 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 08:45:41 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 08:27:05 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 08:16:45 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
  • Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
  • ZHAO Lina (Sun Apr 17 2011 - 00:14:59 CDT)
• Compiling on Windows
  • David Joiner (Wed Mar 30 2011 - 10:04:46 CDT)
  • John Stone (Thu Mar 24 2011 - 21:38:45 CDT)
  • David Joiner (Wed Mar 23 2011 - 11:14:26 CDT)
  • David Joiner (Wed Feb 23 2011 - 20:30:48 CST)
  • John Stone (Wed Feb 23 2011 - 10:31:18 CST)
  • David Joiner (Wed Feb 23 2011 - 10:20:35 CST)
  • David Joiner (Tue Feb 22 2011 - 22:06:24 CST)
  • John Stone (Tue Feb 22 2011 - 22:09:56 CST)
  • David Joiner (Mon Feb 21 2011 - 21:42:48 CST)
  • John Stone (Mon Feb 21 2011 - 21:51:33 CST)
  • John Stone (Mon Feb 21 2011 - 21:28:02 CST)
  • David Joiner (Mon Feb 21 2011 - 21:09:09 CST)
  • David Joiner (Sat Feb 19 2011 - 00:07:25 CST)
  • David Joiner (Fri Feb 18 2011 - 22:10:37 CST)
  • John Stone (Fri Feb 18 2011 - 22:19:44 CST)
  • David Joiner (Fri Feb 18 2011 - 15:29:45 CST)
  • John Stone (Fri Feb 18 2011 - 12:29:42 CST)
  • David Joiner (Fri Feb 18 2011 - 12:17:38 CST)
  • John Stone (Fri Feb 18 2011 - 11:57:33 CST)
  • John Stone (Fri Feb 18 2011 - 11:51:14 CST)
  • Ajasja LjubetiÄ� (Fri Feb 18 2011 - 11:07:59 CST)
  • John Stone (Fri Feb 18 2011 - 10:06:44 CST)
  • Ajasja LjubetiÄ� (Fri Feb 18 2011 - 04:03:41 CST)
  • David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
  • John Stone (Thu Feb 17 2011 - 14:40:24 CST)
  • David Joiner (Thu Feb 17 2011 - 14:12:44 CST)
• Compiling plugins without netcdf
  • Guido Polles (Wed Jun 01 2011 - 12:59:50 CDT)
  • Guido Polles (Wed Jun 01 2011 - 10:09:24 CDT)
  • John Stone (Wed Jun 01 2011 - 10:15:46 CDT)
• Compiling plugins without netcdf support returns an error.
  • Cosseddu, Salvatore (Fri May 13 2011 - 06:41:40 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 19:40:17 CDT)
  • Cosseddu, Salvatore (Thu May 12 2011 - 18:48:11 CDT)
  • John Stone (Thu May 12 2011 - 15:58:12 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
  • Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
  • Cosseddu, Salvatore (Thu May 12 2011 - 13:28:48 CDT)
• Compiling problem
  • John Stone (Mon Jun 19 2006 - 14:46:57 CDT)
  • angel (Mon Jun 19 2006 - 14:23:04 CDT)
  • John Stone (Wed Apr 26 2006 - 15:06:11 CDT)
  • angel (Wed Apr 26 2006 - 14:59:31 CDT)
  • John Stone (Fri Mar 31 2006 - 16:13:07 CST)
  • angel (Fri Mar 31 2006 - 15:57:47 CST)
• compiling problems
  • Justin Gullingsrud (Mon Nov 26 2001 - 13:24:55 CST)
  • B. Bennion (Mon Nov 26 2001 - 11:35:50 CST)
• compiling stopped without any obvious erros
  • Albert (Thu Jan 24 2013 - 10:40:55 CST)
  • Albert (Thu Jan 24 2013 - 01:16:17 CST)
  • John Stone (Wed Jan 23 2013 - 14:13:57 CST)
  • Albert (Wed Jan 23 2013 - 13:00:41 CST)
• Compiling VMD
  • John Stone (Thu Jul 29 2004 - 10:49:14 CDT)
  • Ryan Golhar (Wed Jul 28 2004 - 21:20:12 CDT)
• compiling VMD -- confused failure
  • Cook, Rich (Tue Aug 27 2013 - 14:49:26 CDT)
  • Cook, Rich (Tue Aug 27 2013 - 15:29:47 CDT)
  • John Stone (Tue Aug 27 2013 - 15:08:59 CDT)
  • Axel Kohlmeyer (Tue Aug 27 2013 - 14:20:24 CDT)
  • Cook, Rich (Tue Aug 27 2013 - 13:31:05 CDT)
  • John Stone (Tue Aug 27 2013 - 10:29:49 CDT)
  • Strahs, Dr. Daniel Bernard (Mon Aug 26 2013 - 22:03:56 CDT)
  • Cook, Rich (Mon Aug 26 2013 - 20:15:07 CDT)
• compiling VMD 1.8.3
  • John Stone (Mon May 02 2005 - 09:56:44 CDT)
  • Stefano Piana (Mon May 02 2005 - 05:17:34 CDT)
• Compiling vmd 1.9 plugins
  • John Stone (Wed Oct 26 2011 - 17:03:49 CDT)
  • Andrew Jewett (Wed Oct 26 2011 - 16:44:48 CDT)
  • Matt Fioravante (Wed Oct 26 2011 - 12:55:22 CDT)
• compiling VMD 1.9.2 source with tcl 8.6
  • Axel Kohlmeyer (Tue Apr 07 2015 - 05:57:58 CDT)
  • Vlad Cojocaru (Tue Apr 07 2015 - 05:40:33 CDT)
  • Vlad Cojocaru (Tue Apr 07 2015 - 05:23:35 CDT)
• Compiling VMD 1.9.3 64-bit on MacOS 10.13.6
  • Alex Sha (Mon Nov 26 2018 - 00:28:12 CST)
  • Alex Sha (Fri Nov 23 2018 - 00:48:06 CST)
• compiling VMD 1.9.3 under Ubuntu 22.04LTS: modern C library issues
  • Axel Kohlmeyer (Sat Jul 30 2022 - 16:04:14 CDT)
  • Strahs, Dr. Daniel Bernard (Sat Jul 30 2022 - 14:04:38 CDT)
• compiling VMD 1.9.3 with OSPRay support
  • Axel Kohlmeyer (Tue Jan 10 2017 - 08:54:18 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 08:51:33 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 07:25:10 CST)
  • John Stone (Tue Jan 10 2017 - 08:44:15 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 08:41:35 CST)
  • Vlad Cojocaru (Tue Jan 10 2017 - 08:32:55 CST)
  • John Stone (Tue Jan 10 2017 - 07:59:38 CST)
• Compiling vmd for ppc linux
  • John Stone (Fri Feb 20 2004 - 16:23:33 CST)
  • apeyser_at_newssun.med.miami.edu (Fri Feb 20 2004 - 13:46:50 CST)
  • apeyser_at_newssun.med.miami.edu (Fri Feb 20 2004 - 13:55:41 CST)
• Compiling VMD for Windows 64bit
  • Nima Nouri (Sun Oct 05 2014 - 11:07:33 CDT)
  • Nima Nouri (Sun Oct 05 2014 - 07:56:08 CDT)
  • Nima Nouri (Sun Oct 05 2014 - 07:46:47 CDT)
  • John Stone (Fri Oct 03 2014 - 15:47:50 CDT)
  • Nima Nouri (Fri Oct 03 2014 - 15:08:15 CDT)
• compiling VMD from CVS 2016 09 21
  • Vlad Cojocaru (Tue Oct 04 2016 - 08:53:03 CDT)
  • Vlad Cojocaru (Tue Oct 04 2016 - 08:33:31 CDT)
  • John Stone (Thu Sep 22 2016 - 16:09:01 CDT)
  • Hannes Loeffler (Wed Sep 21 2016 - 12:05:37 CDT)
  • John Stone (Wed Sep 21 2016 - 11:15:56 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 10:17:28 CDT)
  • John Stone (Wed Sep 21 2016 - 09:53:14 CDT)
  • John Stone (Wed Sep 21 2016 - 09:56:02 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 09:14:48 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 08:26:17 CDT)
  • Axel Kohlmeyer (Wed Sep 21 2016 - 08:10:58 CDT)
  • Vlad Cojocaru (Wed Sep 21 2016 - 07:42:06 CDT)
• Compiling VMD from source
  • John Grime (Thu Oct 10 2013 - 16:29:04 CDT)
• Compiling VMD from source on SDSC Datastar (AIX 5.2)
  • Philip Blood (Fri Mar 02 2007 - 18:14:23 CST)
  • John Stone (Fri Mar 02 2007 - 17:15:22 CST)
  • Philip Blood (Fri Mar 02 2007 - 17:09:25 CST)
• compiling vmd from source--will that solve ied issue?
  • John Stone (Wed Dec 07 2005 - 10:01:13 CST)
  • Vlad Cojocaru (Wed Dec 07 2005 - 09:16:31 CST)
• Compiling VMD on IRIX 6.5 redux
  • steve_at_beefeater.darkorb.net (Wed Oct 15 2003 - 12:15:07 CDT)
  • John Stone (Tue Oct 14 2003 - 15:25:49 CDT)
  • steve_at_beefeater.darkorb.net (Thu Oct 09 2003 - 11:24:13 CDT)
• compiling VMD on mac
  • John Stone (Tue Apr 26 2005 - 17:13:36 CDT)
  • John Stone (Tue Apr 26 2005 - 14:25:13 CDT)
  • Hirsh Nanda (Tue Apr 26 2005 - 14:17:32 CDT)
  • John Stone (Wed Apr 20 2005 - 14:57:42 CDT)
  • Michel Espinoza-Fonseca (Wed Apr 20 2005 - 14:53:05 CDT)
  • William Sheffler (Wed Apr 20 2005 - 14:32:05 CDT)
• Compiling VMD plugins on Windows?
  • John Stone (Tue Jan 12 2010 - 10:51:39 CST)
  • Olaf Lenz (Fri Jan 08 2010 - 09:20:47 CST)
• Compiling VMD under Windows XP
  • Ben Chern (Thu Apr 03 2008 - 07:14:22 CDT)
  • John Stone (Thu Apr 03 2008 - 00:13:12 CDT)
  • Ben Chern (Tue Apr 01 2008 - 20:26:36 CDT)
  • Axel Kohlmeyer (Tue Apr 01 2008 - 06:06:22 CDT)
  • Ben Chern (Tue Apr 01 2008 - 01:33:34 CDT)
  • Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
  • Axel Kohlmeyer (Mon Mar 31 2008 - 21:47:02 CDT)
  • John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
  • Ben Chern (Mon Mar 31 2008 - 04:13:38 CDT)
• compiling VMD with cuda from source
  • John Stone (Sat May 23 2020 - 02:30:44 CDT)
  • Oleksii Zdorevskyi (Mon May 04 2020 - 09:11:25 CDT)
  • Josh Vermaas (Mon Apr 20 2020 - 10:16:47 CDT)
  • John Stone (Mon Apr 13 2020 - 09:55:28 CDT)
  • Oleksii Zdorevskyi (Mon Apr 13 2020 - 09:45:11 CDT)
  • Oleksii Zdorevskyi (Mon Apr 13 2020 - 04:28:00 CDT)
  • Josh Vermaas (Fri Apr 10 2020 - 11:21:31 CDT)
  • Oleksii Zdorevskyi (Fri Apr 10 2020 - 10:28:57 CDT)
• Compiling VMD with full OpenGL
  • John Stone (Thu Aug 10 2006 - 17:08:48 CDT)
  • Marc Baaden (Thu Aug 10 2006 - 16:35:36 CDT)
  • John Stone (Thu Aug 10 2006 - 11:09:35 CDT)
  • Marc Baaden (Thu Aug 10 2006 - 07:21:10 CDT)
• compiling vmd with g++-4.6 on ubuntu
  • Sandeep Gupta (Thu Sep 20 2012 - 23:07:40 CDT)
  • Axel Kohlmeyer (Thu Sep 20 2012 - 11:24:29 CDT)
  • Sandeep Gupta (Wed Sep 19 2012 - 12:37:04 CDT)
  • Caio Silva Souza (Wed Sep 19 2012 - 12:30:53 CDT)
  • John Stone (Wed Sep 19 2012 - 12:06:22 CDT)
  • Sandeep Gupta (Wed Sep 19 2012 - 11:45:46 CDT)
  • John Stone (Wed Sep 19 2012 - 11:08:34 CDT)
  • Sandeep Gupta (Wed Sep 19 2012 - 06:45:55 CDT)
• compiling VMD with gcc 4.7
  • Vlad Cojocaru (Thu Oct 04 2012 - 13:25:24 CDT)
  • lloyd riggs (Thu Oct 04 2012 - 10:49:33 CDT)
  • Axel Kohlmeyer (Thu Oct 04 2012 - 08:30:36 CDT)
  • Vlad Cojocaru (Thu Oct 04 2012 - 08:41:51 CDT)
  • Vlad Cojocaru (Wed Oct 03 2012 - 14:08:55 CDT)
  • John Stone (Wed Oct 03 2012 - 14:03:36 CDT)
  • Vlad Cojocaru (Wed Oct 03 2012 - 09:37:45 CDT)
• Compiling VMD with the TNG plugin
  • Dominic Hayward (Tue Jan 26 2021 - 12:11:11 CST)
  • John Stone (Tue Jan 26 2021 - 08:51:45 CST)
  • Dominic Hayward (Tue Jan 26 2021 - 04:08:29 CST)
  • Vermaas, Josh (Mon Jan 25 2021 - 13:02:19 CST)
  • Dominic Hayward (Mon Jan 25 2021 - 11:46:41 CST)
• Compiling VMD-1.8 as a loadable python module
  • Justin Gullingsrud (Thu Feb 06 2003 - 10:55:14 CST)
  • Lars Bruno Hansen (Thu Feb 06 2003 - 06:15:02 CST)
• compiling vmd...
  • B. Bennion (Tue Jan 28 2003 - 10:09:33 CST)
  • John Stone (Tue Jan 28 2003 - 09:39:36 CST)
  • Lubos Vrbka (Tue Jan 28 2003 - 04:54:00 CST)
• Compiling VMD: Trouble with DispCmds.C
  • Luis Rosales (Tue May 24 2005 - 17:36:32 CDT)
  • John Stone (Mon May 23 2005 - 10:04:27 CDT)
  • Luis Rosales (Fri May 20 2005 - 22:28:18 CDT)
• Compiling without graphics
  • Axel Kohlmeyer (Tue Jun 01 2010 - 21:55:58 CDT)
  • John Stone (Tue Jun 01 2010 - 22:06:55 CDT)
  • Philip Peartree (Tue Jun 01 2010 - 20:31:18 CDT)
• compiling/porting vmd
  • brad noyes (Fri May 23 2003 - 01:30:18 CDT)
  • John Stone (Thu May 22 2003 - 23:03:06 CDT)
  • brad noyes (Thu May 22 2003 - 22:23:25 CDT)
• complete residues within
  • Alberto Perez (Thu Mar 06 2008 - 04:38:02 CST)
  • Olaf Lenz (Thu Mar 06 2008 - 03:28:08 CST)
  • Leandro Martínez (Thu Mar 06 2008 - 03:06:48 CST)
  • jrui_at_ci.uc.pt (Thu Mar 06 2008 - 03:02:28 CST)
  • Leandro Martínez (Thu Mar 06 2008 - 02:20:59 CST)
• complex buried area
  • Josh Vermaas (Wed Apr 03 2013 - 12:58:51 CDT)
  • Felipe Merino (Wed Apr 03 2013 - 11:07:38 CDT)
• compose pdb
  • John Stone (Fri Feb 03 2006 - 12:42:49 CST)
  • Osmany Guirola Cruz (Fri Feb 03 2006 - 12:37:47 CST)
• Compressed files
  • John Stone (Thu Jul 11 2002 - 10:26:13 CDT)
  • Stéphane Teletchéa (Thu Jul 11 2002 - 03:17:41 CDT)
• compressed trajectory support
  • Mgr. Lubos Vrbka (Tue Apr 19 2005 - 01:04:57 CDT)
  • Axel Kohlmeyer (Mon Apr 18 2005 - 12:47:01 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 10:48:02 CDT)
  • Axel Kohlmeyer (Mon Apr 18 2005 - 10:38:14 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 10:08:41 CDT)
  • Bogdan Costescu (Mon Apr 18 2005 - 09:57:14 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 09:46:40 CDT)
  • Bogdan Costescu (Mon Apr 18 2005 - 09:20:00 CDT)
  • Mgr. Lubos Vrbka (Mon Apr 18 2005 - 07:13:10 CDT)
• Computational Biophysics Workshop using NAMD and VMD, November 18-22, 2013, Urbana, Illinois, USA
  • David Brandon (Fri Aug 23 2013 - 14:15:11 CDT)
• Computational Electrostatics for Biological Applications (CEBA'13) July 01-03, 2013 - Genova - Italy
  • Walter Rocchia (Wed Mar 27 2013 - 17:49:09 CDT)
• Compute angle between 2 principal axis
  • Revthi Sanker (Tue Jun 17 2014 - 00:57:58 CDT)
• Compute B-factor from MD run
  • Aaron Oakley (Fri Sep 12 2003 - 03:02:42 CDT)
• Compute force between two atoms
  • Axel Kohlmeyer (Tue Feb 26 2008 - 21:42:48 CST)
  • Chen Fei (Tue Feb 26 2008 - 20:28:22 CST)
• Compute the angle between a vector and the largest inertia axis
  • Axel Kohlmeyer (Tue Jan 30 2007 - 11:16:32 CST)
  • Prevost Martine (Tue Jan 30 2007 - 04:15:03 CST)
• Computer for 3D visualization
  • John Stone (Thu Sep 21 2006 - 05:51:23 CDT)
  • Berit Hinnemann (Wed Sep 20 2006 - 04:45:58 CDT)
• Computer hangs on trying to launch VMD CUDA
  • Axel Kohlmeyer (Tue Jul 05 2011 - 15:08:03 CDT)
  • John Stone (Tue Jul 05 2011 - 14:01:24 CDT)
  • Francesco Pietra (Mon Jul 04 2011 - 02:19:02 CDT)
• Computing angles
  • Axel Kohlmeyer (Fri Sep 07 2007 - 17:27:26 CDT)
  • jo hanna (Fri Sep 07 2007 - 17:18:33 CDT)
• Computing atom distances
  • Ashar Malik (Sun Nov 05 2017 - 00:25:41 CDT)
  • Vermaas, Joshua (Sat Nov 04 2017 - 20:30:45 CDT)
  • Windle,Stephen (Sat Nov 04 2017 - 17:05:40 CDT)
  • Chitrak Gupta (Fri Nov 03 2017 - 18:16:55 CDT)
  • Windle,Stephen (Fri Nov 03 2017 - 17:43:44 CDT)
  • Vermaas, Joshua (Fri Nov 03 2017 - 17:32:09 CDT)
  • Windle,Stephen (Fri Nov 03 2017 - 16:57:55 CDT)
  • Vermaas, Joshua (Fri Nov 03 2017 - 16:35:00 CDT)
  • Windle,Stephen (Fri Nov 03 2017 - 16:29:48 CDT)
  • Vermaas, Joshua (Tue Oct 31 2017 - 18:03:12 CDT)
  • Chitrak Gupta (Tue Oct 31 2017 - 17:27:38 CDT)
  • Windle,Stephen (Tue Oct 31 2017 - 15:52:54 CDT)
  • Ashar Malik (Tue Oct 31 2017 - 17:00:25 CDT)
• computing potential using pmepot
  • Abolfazl Bayat (Mon Jun 25 2012 - 11:16:49 CDT)
• Computing the transformation_matrix for best fit alignment of structures
  • LW (Thu Apr 18 2013 - 02:22:48 CDT)
  • John Stone (Thu Apr 18 2013 - 01:22:21 CDT)
  • LW (Wed Apr 17 2013 - 22:54:18 CDT)
• concantenating psf files
  • lloyd riggs (Sun Sep 30 2012 - 13:08:40 CDT)
• Concatenate DCD Files with Different Numbers of Atoms
  • Efthymiou, Christos (Wed Jul 05 2023 - 02:53:00 CDT)
  • Strahs, Dr. Daniel Bernard (Sat Jul 01 2023 - 21:40:55 CDT)
  • Nick Bayhi (Sat Jul 01 2023 - 17:32:29 CDT)
  • Efthymiou, Christos (Sat Jul 01 2023 - 16:04:35 CDT)
• Concatenate Outputs
  • McGuire, Kelly (Sat Nov 10 2018 - 14:52:45 CST)
  • McGuire, Kelly (Fri Nov 09 2018 - 14:12:21 CST)
• concatenate protein and 2 ligand files
  • John Stone (Mon Feb 09 2009 - 15:17:44 CST)
  • Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
• Concatenate translated pdb's in to one pdb file- Writepdb is giving error
  • Mohan maruthi sena (Mon Apr 08 2013 - 06:27:15 CDT)
• concatenate two pdb files?
  • Subbarao Kanchi (Wed Mar 30 2016 - 23:51:00 CDT)
  • Akshay Bhatnagar (Wed Mar 30 2016 - 23:08:34 CDT)
• Concerning protein rotation
  • John Stone (Mon Sep 08 2008 - 11:25:47 CDT)
  • Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
• CONECT in pdb files
  • John Stone (Mon Jul 05 2004 - 14:16:13 CDT)
  • Brian Bennion (Fri Jul 02 2004 - 18:01:58 CDT)
  • Travis DePuy (Fri Jul 02 2004 - 14:45:10 CDT)
• CONECT Records in .pdb file - bonds not getting plotted
  • John Stone (Wed Sep 03 2008 - 14:01:23 CDT)
  • Paul T. Bauman (Wed Sep 03 2008 - 11:53:37 CDT)
  • Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
• conect2psf
  • Andrew Dalke (Wed Jul 24 2002 - 04:51:04 CDT)
  • Eugen Leitl (Wed Jul 24 2002 - 04:14:53 CDT)
  • Andrew Dalke (Tue Jul 23 2002 - 23:35:06 CDT)
• Confidential
  • Ibrahim Dunga (Fri May 14 2004 - 07:37:05 CDT)
• Configuration file
  • John Stone (Tue Mar 06 2007 - 10:02:47 CST)
  • Rita Cassia (Tue Mar 06 2007 - 06:37:47 CST)
  • Ioana Cozmuta (Tue Apr 29 2003 - 19:41:47 CDT)
• configure do nothing (Linux)
  • Juan Alfredo Freites (Wed Mar 31 2004 - 12:04:28 CST)
  • Mike McCallum (Wed Mar 31 2004 - 10:44:25 CST)
  • Arturas (Wed Mar 31 2004 - 09:22:54 CST)
• configure do nothing in Linux (???) - thank you !
  • Arturas (Thu Apr 01 2004 - 03:23:39 CST)
• configure do nothing in Linux(???)
  • Jérôme Hénin (Wed Mar 31 2004 - 11:20:51 CST)
  • John Stone (Wed Mar 31 2004 - 10:20:28 CST)
  • Arturas (Wed Mar 31 2004 - 09:27:36 CST)
• Configure VMD while GROMACS Installation
  • Axel Kohlmeyer (Tue Feb 07 2012 - 05:52:22 CST)
  • Hitesh Patel (Tue Feb 07 2012 - 03:39:30 CST)
• Configuring Tkcon in VMD for Catalina to access history with up arrow
  • John Stone (Fri Jul 24 2020 - 14:40:45 CDT)
  • Chang, Christopher (Fri Jul 24 2020 - 14:31:02 CDT)
  • John Stone (Fri Jul 24 2020 - 13:36:24 CDT)
  • Chang, Christopher (Thu Jul 23 2020 - 17:16:32 CDT)
• configuring vmd w/ browser on OS X
  • John Stone (Mon Aug 11 2003 - 11:22:14 CDT)
  • Charles McCallum (Fri Aug 08 2003 - 21:49:16 CDT)
• conflict between VMD and Cygwin
  • John Stone (Mon Feb 14 2011 - 18:19:52 CST)
  • Li, Liwei (Mon Feb 14 2011 - 18:02:00 CST)
• conflict between VMD and Netbeans IDE on MacOSX
  • John Stone (Tue Jan 12 2010 - 14:13:30 CST)
  • Leonardo Trabuco (Thu Jan 07 2010 - 08:02:37 CST)
  • Wayne Dawson (Thu Jan 07 2010 - 06:44:52 CST)
  • Robert Brunner (Wed Jan 06 2010 - 11:18:11 CST)
  • Wayne Dawson (Tue Jan 05 2010 - 21:16:58 CST)
• Conformation assignment
  • Navid Shervani-Tabar (Wed Sep 16 2020 - 14:01:30 CDT)
• conformational alignment
  • Wen Li (Thu Mar 31 2005 - 12:55:27 CST)
  • John Stone (Thu Mar 31 2005 - 12:50:53 CST)
  • Wen Li (Thu Mar 31 2005 - 12:49:47 CST)
  • John Stone (Thu Mar 31 2005 - 12:40:51 CST)
  • Wen Li (Thu Mar 31 2005 - 12:26:20 CST)
  • Wen Li (Thu Mar 31 2005 - 10:53:10 CST)
  • John Stone (Thu Mar 31 2005 - 10:40:42 CST)
  • Wen Li (Thu Mar 31 2005 - 10:32:51 CST)
  • John Stone (Thu Mar 31 2005 - 10:29:54 CST)
  • Wen Li (Thu Mar 31 2005 - 10:24:18 CST)
  • John Stone (Wed Mar 30 2005 - 15:30:26 CST)
  • Wen Li (Wed Mar 30 2005 - 15:21:26 CST)
• conformations of a linker
  • Boris Steipe (Fri Oct 31 2008 - 16:39:17 CDT)
  • Peter Freddolino (Fri Oct 31 2008 - 14:37:34 CDT)
  • Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
• confusing about the residue number
  • Ashma Khan (Thu Dec 10 2020 - 10:07:56 CST)
  • vermaasj (Thu Dec 10 2020 - 09:47:00 CST)
  • Ashma Khan (Wed Dec 09 2020 - 23:24:36 CST)
  • Roshan Shrestha (Wed Dec 09 2020 - 23:18:50 CST)
  • Ashma Khan (Wed Dec 09 2020 - 22:43:18 CST)
• connect a spring between all the atoms present in pdb structure
  • Axel Kohlmeyer (Sat Aug 04 2012 - 13:20:05 CDT)
  • SONY kaur (Sat Aug 04 2012 - 04:31:42 CDT)
• Connect particular residues with a line
  • Ashar Malik (Sat Sep 01 2018 - 22:39:17 CDT)
  • Raag Saluja (Sat Sep 01 2018 - 12:39:02 CDT)
• Connecting a phantom with NAMD and VMD
  • John Stone (Tue Nov 07 2006 - 16:40:45 CST)
  • preeda (Mon Nov 06 2006 - 00:39:36 CST)
• Connecting new residues to old residues in topology file
  • Peter Freddolino (Wed Jun 20 2018 - 21:10:23 CDT)
  • Nick Palmer (Wed Jun 20 2018 - 13:28:08 CDT)
• Connecting VMD to a supercomputer center
  • SM Bargeen A Turzo (Thu Mar 29 2018 - 14:04:59 CDT)
• connectivity in RBCG file(pdb extension)
  • ANURAG JHA (Tue Sep 27 2011 - 18:46:20 CDT)
• Connectivity lost when loading second pdb
  • MW Van der Kamp, School of Chemistry (Tue Oct 03 2006 - 11:31:59 CDT)
  • Axel Kohlmeyer (Tue Oct 03 2006 - 08:07:39 CDT)
  • MW Van der Kamp, School of Chemistry (Tue Oct 03 2006 - 04:29:20 CDT)
  • John Stone (Tue Oct 03 2006 - 00:38:41 CDT)
  • MW Van der Kamp, School of Chemistry (Mon Oct 02 2006 - 11:06:33 CDT)
• connectivity problem
  • Axel Kohlmeyer (Wed Jan 09 2008 - 10:09:35 CST)
  • rams rams (Wed Jan 09 2008 - 08:57:48 CST)
• Consider fluctuating volume for density
  • Axel Kohlmeyer (Thu May 10 2007 - 09:45:04 CDT)
  • Philipp Schoen1 (Thu May 10 2007 - 05:16:57 CDT)
• Considering special bonds not all of bonds,
  • Ali Alizadeh (Wed Aug 07 2013 - 16:07:29 CDT)
  • Josh Vermaas (Wed Aug 07 2013 - 15:15:45 CDT)
  • Josh Vermaas (Wed Aug 07 2013 - 14:28:46 CDT)
  • Ali Alizadeh (Wed Aug 07 2013 - 15:03:10 CDT)
  • Axel Kohlmeyer (Wed Aug 07 2013 - 13:44:04 CDT)
  • Ali Alizadeh (Wed Aug 07 2013 - 12:42:56 CDT)
  • Axel Kohlmeyer (Wed Aug 07 2013 - 09:10:43 CDT)
  • Ali Alizadeh (Wed Aug 07 2013 - 08:03:40 CDT)
• Consistent size
  • Josh Vermaas (Thu Oct 15 2015 - 11:33:43 CDT)
  • Maxim Belkin (Thu Oct 15 2015 - 09:44:09 CDT)
  • Eric Smoll (Wed Oct 14 2015 - 21:33:58 CDT)
• console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages
  • Pattanayek, Sabuj (Tue Jun 07 2005 - 11:57:52 CDT)
  • Alex Vakhrouchev (Tue Jun 07 2005 - 00:09:22 CDT)
  • Sabuj Pattanayek (Thu Apr 21 2005 - 17:46:59 CDT)
  • John Stone (Thu Apr 21 2005 - 17:37:39 CDT)
  • Sabuj Pattanayek (Thu Apr 21 2005 - 17:32:55 CDT)
  • John Stone (Thu Apr 21 2005 - 17:22:44 CDT)
  • Sabuj Pattanayek (Thu Apr 21 2005 - 17:19:57 CDT)
• Constant pH MD with NAMD
  • Hoang, Oanh Tu (Wed Jul 19 2023 - 08:15:22 CDT)
• constant region selection for animation
  • John Stone (Thu Jun 25 2009 - 10:03:21 CDT)
  • Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
• constant velocity for carbon nanotubes
  • Axel Kohlmeyer (Thu Jul 19 2012 - 02:15:07 CDT)
  • bond.james (Wed Jul 18 2012 - 21:38:48 CDT)
• Constraining two sets of atoms
  • Josh Vermaas (Mon Sep 15 2014 - 19:41:49 CDT)
  • Natnael Doilicho (Mon Sep 15 2014 - 18:21:45 CDT)
• constraints
  • Swarna Patra (Thu Jan 20 2005 - 20:49:49 CST)
• constructing a .tpr
  • Axel Kohlmeyer (Tue Dec 24 2013 - 12:04:09 CST)
  • Rasoul Nasiri (Tue Dec 24 2013 - 11:42:25 CST)
  • Axel Kohlmeyer (Tue Dec 24 2013 - 05:49:49 CST)
  • Axel Kohlmeyer (Tue Dec 24 2013 - 04:29:10 CST)
  • Rasoul Nasiri (Tue Dec 24 2013 - 02:30:03 CST)
• constructing spherical molecule?
  • Josh Vermaas (Tue Apr 05 2016 - 11:05:11 CDT)
  • Olya Kravchenko (Tue Apr 05 2016 - 10:23:46 CDT)
  • Olya Kravchenko (Mon Apr 04 2016 - 15:16:12 CDT)
  • Josh Vermaas (Mon Apr 04 2016 - 17:06:46 CDT)
• consultation about metal_enviroment.tcl
  • Dong Luo (Wed Dec 22 2010 - 09:45:19 CST)
  • ÅÓ´ºÀö (Wed Dec 22 2010 - 03:30:20 CST)
• contact between 2 residues
  • John Stone (Tue May 30 2006 - 14:27:24 CDT)
  • L. Michel Espinoza-Fonseca (Tue May 30 2006 - 14:03:06 CDT)
• contact map
  • Axel Kohlmeyer (Mon Jul 05 2010 - 11:47:31 CDT)
  • leila karami (Mon Jul 05 2010 - 09:46:04 CDT)
  • leila karami (Mon Jul 05 2010 - 09:12:47 CDT)
  • leila karami (Mon Jul 05 2010 - 08:33:23 CDT)
  • Luis Gracia (Wed Jun 01 2005 - 18:13:39 CDT)
  • Anuradha Mittal (Wed Jun 01 2005 - 14:56:06 CDT)
• contact map (over all frames)
  • Peter Freddolino (Fri Apr 13 2007 - 21:25:24 CDT)
  • amit dong (Fri Apr 13 2007 - 15:53:24 CDT)
• contact map definition
  • dimka (Mon Mar 13 2006 - 12:03:18 CST)
  • Vlad Cojocaru (Mon Mar 13 2006 - 11:53:22 CST)
  • John Stone (Mon Mar 13 2006 - 11:34:02 CST)
  • Jindal Shah (Mon Mar 13 2006 - 11:21:20 CST)
• contact map for Protein-DNA interaction
  • Barry Isralewitz (Mon Jul 12 2010 - 13:50:25 CDT)
  • atila petrosian (Mon Jul 12 2010 - 02:19:13 CDT)
  • leila karami (Wed Jul 07 2010 - 03:32:51 CDT)
• contact map in Rainbow scale
  • Vermaas, Joshua (Fri Jan 12 2018 - 13:10:25 CST)
  • Roshan Shrestha (Fri Jan 12 2018 - 11:55:56 CST)
• contact map lig-pro
  • John Stone (Wed Apr 19 2006 - 17:46:14 CDT)
  • andrea spitaleri (Wed Apr 19 2006 - 05:37:23 CDT)
• Contact map using VMD Contact Map Plugin
  • Roshan Shrestha (Tue Dec 19 2017 - 20:49:22 CST)
• contactmap for RNA
  • Samuel Coulbourn Flores 花山 (Wed Jan 28 2009 - 16:44:43 CST)
• Contacts among two sets of atoms
  • Vermaas, Joshua (Tue Jan 03 2017 - 10:54:03 CST)
  • saeed amini (Mon Jan 02 2017 - 10:19:08 CST)
• contacts and pbc
  • Jesper Sørensen (Wed Jul 06 2011 - 03:30:37 CDT)
  • John Stone (Tue Jul 05 2011 - 13:59:28 CDT)
  • Jesper Sørensen (Sun Jul 03 2011 - 11:30:43 CDT)
  • Axel Kohlmeyer (Sun Jul 03 2011 - 11:21:39 CDT)
  • Jesper Sørensen (Sun Jul 03 2011 - 08:39:02 CDT)
• contactvFreq TCL script not running
  • Mi Yang (Wed Oct 20 2021 - 00:57:01 CDT)
• contour plots
  • Alexandre A. Vakhrouchev (Mon Jul 21 2008 - 02:25:51 CDT)
  • Subramanian Vaitheeswaran (Thu Jul 10 2008 - 10:02:58 CDT)
  • Giovanni Bellesia (Thu Jul 10 2008 - 01:09:36 CDT)
  • Peter Freddolino (Thu Jul 10 2008 - 00:27:41 CDT)
  • Aaron.Oakley_at_csiro.au (Wed Jul 09 2008 - 22:50:54 CDT)
• Contour plots for XYZ format
  • Axel Kohlmeyer (Sat Oct 30 2010 - 19:17:46 CDT)
  • Wang Xianqiao (Sat Oct 30 2010 - 19:02:25 CDT)
  • Axel Kohlmeyer (Sat Oct 30 2010 - 10:56:04 CDT)
  • Wang Xianqiao (Fri Oct 29 2010 - 23:47:51 CDT)
• Contribution of selected atoms to surface
  • Peter Freddolino (Fri May 04 2007 - 10:13:41 CDT)
  • Brian Smith (Fri May 04 2007 - 03:12:57 CDT)
• control drawing method
  • Axel Kohlmeyer (Mon Feb 25 2008 - 14:51:57 CST)
  • Myunggi Yi (Mon Feb 25 2008 - 13:26:33 CST)
• Control of aminoacid ionization in VMD
  • Luis Agullo (LAB) (Thu Nov 05 2009 - 02:24:26 CST)
  • L. Michel Espinoza-Fonseca (Tue Nov 03 2009 - 05:24:46 CST)
  • Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
• control the spacing between the dashes in the hydrogen bonding between two atoms
  • Axel Kohlmeyer (Tue Oct 30 2012 - 08:59:22 CDT)
  • mahesh gudem (Tue Oct 30 2012 - 07:48:21 CDT)
• Convergence of the Gram-Charlier expansion
  • John Stone (Wed Oct 10 2012 - 15:05:48 CDT)
  • Ali Khanlarkhani (Wed Sep 26 2012 - 15:24:20 CDT)
  • Ali Khanlarkhani (Wed Sep 26 2012 - 15:25:54 CDT)
  • Ali Khanlarkhani (Wed Sep 26 2012 - 10:36:37 CDT)
• conversion from CHARMM27 psf to charmm36 with psfgen?
  • Edward Lyman (Mon Feb 25 2013 - 08:37:12 CST)
• Conversion from gromacs trr trajectory into charmm trajectory
  • Vermaas, Joshua (Tue Jan 29 2019 - 11:25:50 CST)
  • Roshan Shrestha (Mon Jan 28 2019 - 23:14:21 CST)
• Conversion into POVRay coordinates
  • John Stone (Fri Aug 06 2010 - 09:23:02 CDT)
  • Nicolas Sapay (Fri Aug 06 2010 - 08:41:47 CDT)
  • John Stone (Thu Aug 05 2010 - 17:06:54 CDT)
  • Nicolas Sapay (Wed Aug 04 2010 - 04:01:20 CDT)
• Conversion of DCD trajectories to AMBER ones ?
  • Marek Maly (Mon Jul 05 2010 - 09:07:14 CDT)
  • Axel Kohlmeyer (Mon Jul 05 2010 - 05:54:16 CDT)
  • Marek Maly (Mon Jul 05 2010 - 05:06:40 CDT)
• Conversion of GAMESS Quantum MD trajectory file
  • radak004_at_umn.edu (Mon Apr 26 2010 - 16:38:36 CDT)
  • Axel Kohlmeyer (Mon Apr 26 2010 - 15:01:16 CDT)
  • Diego Javier Alonso de Armiño (Mon Apr 26 2010 - 13:59:49 CDT)
• conversion of gromacs trajectory file (xtc) to amber trajectory file (mdcrd)
  • Axel Kohlmeyer (Sat Dec 25 2010 - 11:20:06 CST)
  • leila karami (Sat Dec 25 2010 - 09:14:57 CST)
• conversion of topology entries from charmm str format to vmd psfgen format
  • Monika Madhavi (Tue Sep 15 2015 - 05:40:06 CDT)
• Conversion of trajectory files
  • Kooser, Ara S (Wed Nov 10 2004 - 10:11:32 CST)
  • Ernesto E. Di Iorio (Wed Nov 10 2004 - 04:23:19 CST)
  • Adrain Koh (Tue Nov 09 2004 - 21:43:52 CST)
• conversion of vmd generated (C36) bilayer to gromac format
  • Miro Astore (Sun Jan 19 2020 - 16:35:54 CST)
  • Yogesh Sharma (Sun Jan 19 2020 - 01:04:27 CST)
• convert .coor to pdb
  • Joshua D. Moore (Mon Sep 26 2011 - 09:12:09 CDT)
  • Zumot, Elia Nabil (Mon Sep 26 2011 - 08:08:59 CDT)
  • Axel Kohlmeyer (Mon Sep 26 2011 - 07:04:11 CDT)
  • matziast_at_med.uth.gr (Mon Sep 26 2011 - 06:08:24 CDT)
• convert .mrc map to .dx format
  • Karol KASZUBA (Sat Mar 04 2017 - 05:49:53 CST)
  • Steven Cohen (Fri Mar 03 2017 - 10:49:47 CST)
  • Ryan McGreevy (Fri Mar 03 2017 - 10:08:58 CST)
  • Karol KASZUBA (Fri Mar 03 2017 - 09:51:29 CST)
• convert AMBER format file to CHARMM format file or NAMD format file
  • Axel Kohlmeyer (Thu Apr 17 2014 - 11:03:49 CDT)
  • Josh Vermaas (Thu Apr 17 2014 - 10:27:43 CDT)
  • Norge Cruz Hernández (Thu Apr 17 2014 - 10:08:29 CDT)
  • Axel Kohlmeyer (Wed Apr 16 2014 - 14:55:58 CDT)
  • Josh Vermaas (Wed Apr 16 2014 - 14:29:44 CDT)
  • Norge Cruz Hernández (Wed Apr 16 2014 - 13:24:26 CDT)
• Convert an ascii matrix to an image
  • Jérôme Hénin (Mon Mar 13 2006 - 15:22:11 CST)
  • Nuno R. L. Ferreira (Mon Mar 13 2006 - 11:47:04 CST)
  • Axel Kohlmeyer (Sat Mar 11 2006 - 16:25:18 CST)
  • John Stone (Mon Mar 13 2006 - 10:18:17 CST)
  • Jérôme Hénin (Mon Mar 13 2006 - 07:33:11 CST)
  • Nicolas Sapay (Mon Mar 13 2006 - 04:34:22 CST)
  • Nuno R. L. Ferreira (Sat Mar 11 2006 - 13:05:10 CST)
• Convert CHARMM psf to X-PLOR
  • Monika Madhavi (Sun Aug 12 2012 - 19:51:20 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 14:48:01 CDT)
  • Monika Madhavi (Fri Aug 10 2012 - 11:50:01 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 10:43:03 CDT)
  • Monika Madhavi (Fri Aug 10 2012 - 10:19:15 CDT)
  • John Stone (Fri Aug 10 2012 - 09:29:08 CDT)
  • Monika Madhavi (Fri Aug 10 2012 - 01:04:08 CDT)
• convert dcd file to xyz
  • Josh Vermaas (Wed Oct 02 2013 - 13:24:13 CDT)
  • Axel Kohlmeyer (Wed Oct 02 2013 - 13:13:18 CDT)
  • John Stone (Wed Oct 02 2013 - 12:48:06 CDT)
  • Huong Vu (Wed Oct 02 2013 - 12:21:04 CDT)
• convert DCD files to GROMACS .XTC format
  • John Stone (Tue Aug 31 2004 - 15:11:09 CDT)
  • Vani Krishna (Sat Aug 28 2004 - 17:43:11 CDT)
• convert dcd to coordinate, each frame, conserving the identity
  • fabrizio.benedetti_at_unil.ch (Fri Aug 10 2012 - 02:23:30 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 03:13:23 CDT)
• convert frames to nano seconds
  • Chitrak Gupta (Thu Aug 17 2017 - 17:13:45 CDT)
  • Ashar Malik (Thu Aug 17 2017 - 09:27:56 CDT)
  • Chitrak Gupta (Thu Aug 17 2017 - 09:15:11 CDT)
  • Chitrak Gupta (Thu Aug 17 2017 - 09:32:19 CDT)
  • Ashar Malik (Thu Aug 17 2017 - 07:58:49 CDT)
  • Saikat Pal (Wed Aug 16 2017 - 08:31:58 CDT)
  • Ashar Malik (Wed Aug 16 2017 - 09:53:19 CDT)
• convert pdb file from angstorm to nm units
  • John Stone (Thu May 09 2013 - 10:35:21 CDT)
  • Nandigana, Vishal Venkata Raghave (Wed May 08 2013 - 12:06:29 CDT)
  • Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 22:47:24 CDT)
  • Josh Vermaas (Tue May 07 2013 - 17:26:52 CDT)
  • Josh Vermaas (Tue May 07 2013 - 15:09:09 CDT)
  • John Stone (Tue May 07 2013 - 14:38:47 CDT)
  • Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 13:55:18 CDT)
• convert PDB file to CRD?
  • John Stone (Mon Nov 14 2005 - 11:47:48 CST)
  • Wei Chen (Mon Nov 14 2005 - 11:13:18 CST)
  • Zhen Qin (Fri Nov 11 2005 - 17:49:21 CST)
• convert pdb format to normal pdb format
  • Bjoern Olausson (Wed Aug 24 2011 - 06:10:45 CDT)
  • hamze rahimi (Wed Aug 24 2011 - 04:48:09 CDT)
• convert pdb to psf
  • Jim Phillips (Tue Sep 30 2003 - 12:48:26 CDT)
  • FOK LO MING (Tue Sep 30 2003 - 03:54:34 CDT)
• convert prmtop to psf
  • Axel Kohlmeyer (Tue May 17 2011 - 05:56:15 CDT)
  • Jorgen Simonsen (Tue May 17 2011 - 04:17:33 CDT)
  • Axel Kohlmeyer (Wed Feb 02 2011 - 15:45:16 CST)
  • Axel Kohlmeyer (Wed Feb 02 2011 - 09:26:32 CST)
  • Wei Huang (Tue Feb 01 2011 - 22:04:07 CST)
  • Axel Kohlmeyer (Tue Feb 01 2011 - 17:41:31 CST)
  • Wei Huang (Tue Feb 01 2011 - 16:22:28 CST)
  • Axel Kohlmeyer (Tue Jun 22 2010 - 14:01:36 CDT)
  • John Stone (Tue Jun 22 2010 - 13:58:14 CDT)
  • Lai zaizhi (Tue Jun 22 2010 - 11:54:56 CDT)
  • Lai zaizhi (Tue Jun 22 2010 - 12:22:16 CDT)
  • John Stone (Tue Jun 22 2010 - 11:27:49 CDT)
  • George Madalin Giambasu (Mon Jun 21 2010 - 18:09:28 CDT)
  • Lai zaizhi (Mon Jun 21 2010 - 17:33:07 CDT)
  • Axel Kohlmeyer (Mon Jun 21 2010 - 17:25:22 CDT)
  • John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
  • Lai zaizhi (Mon Jun 21 2010 - 16:41:37 CDT)
• Convert problem
  • Mike McCallum (Wed Apr 29 2020 - 22:47:43 CDT)
  • mohamed marzouk (Sat Apr 25 2020 - 11:44:09 CDT)
  • mohamed marzouk (Sat Apr 25 2020 - 11:38:23 CDT)
  • Pawel Kedzierski (Sat Apr 25 2020 - 10:45:18 CDT)
  • Giacomo Fiorin (Sat Apr 25 2020 - 09:45:29 CDT)
  • mohamed marzouk (Sat Apr 25 2020 - 03:31:23 CDT)
• convert psf to top with topotools
  • Vermaas, Joshua (Wed Jun 21 2017 - 18:02:59 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 18:21:22 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 16:58:52 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 17:45:11 CDT)
  • Radak, Brian K (Wed Jun 21 2017 - 17:03:23 CDT)
  • Vermaas, Joshua (Wed Jun 21 2017 - 13:30:42 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 13:35:12 CDT)
  • Axel Kohlmeyer (Wed Jun 21 2017 - 13:04:40 CDT)
  • Qinghua Liao (Wed Jun 21 2017 - 12:20:43 CDT)
• Convert RNA to DNA
  • Iman Jeddi (Sat Dec 14 2013 - 11:54:12 CST)
• convert tcl to python
  • Peter Freddolino (Thu Mar 01 2007 - 09:28:55 CST)
  • Per Jr. Greisen (Thu Mar 01 2007 - 05:54:18 CST)
• convert THR and SER to the phosphorylated forms
  • L. Michel Espinoza-Fonseca (Wed Oct 22 2008 - 04:01:01 CDT)
  • bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
• Convert trajectory
  • Diego Gomes (Wed May 31 2023 - 09:49:07 CDT)
  • Joel Subach (Thu May 25 2023 - 02:26:17 CDT)
  • GAGANJYOT KAUR BAKSHI (Thu May 25 2023 - 01:40:01 CDT)
  • Joel Subach (Thu May 25 2023 - 01:38:07 CDT)
  • GAGANJYOT KAUR BAKSHI (Wed May 24 2023 - 21:08:06 CDT)
• convert unformatted delphi phi to formatted
  • Jun Cheng (Wed Feb 10 2010 - 10:09:55 CST)
• convertind dcd to xyz file
  • Thomas Bishop (Mon Dec 05 2011 - 08:54:11 CST)
  • Axel Kohlmeyer (Tue Nov 29 2011 - 17:43:05 CST)
  • siladitya mukherjee (Tue Nov 29 2011 - 16:39:22 CST)
• converting
  • John Stone (Wed Dec 04 2002 - 16:16:22 CST)
  • Vlad Cojocaru (Wed Dec 04 2002 - 16:04:06 CST)
• converting .dx volumetric data to 2D isocontour
  • John Stone (Tue Aug 02 2011 - 16:53:16 CDT)
  • Raul Araya (Thu Jul 28 2011 - 12:31:37 CDT)
• Converting .txt trajectory files to VMD compatible format
  • John Stone (Wed Nov 17 2004 - 11:20:27 CST)
  • Adrain Koh (Tue Nov 09 2004 - 21:40:18 CST)
  • John Stone (Fri Nov 05 2004 - 11:25:08 CST)
  • Adrain Koh (Fri Nov 05 2004 - 04:43:40 CST)
• converting a .cif file into a vmd readable format, how?
  • Ryan McGreevy (Thu Oct 23 2014 - 12:45:44 CDT)
  • Jonathan Gough (Thu Oct 23 2014 - 12:52:51 CDT)
  • Ryan McGreevy (Thu Oct 23 2014 - 13:01:11 CDT)
  • Jonathan Gough (Thu Oct 23 2014 - 11:58:07 CDT)
• converting coarse grained POPC membranes to atomistic representation (AMBER, GAFF)
  • Vlad Cojocaru (Thu Aug 18 2011 - 07:06:32 CDT)
• converting Desmond trajectory and energy file to gromacs
  • Axel Kohlmeyer (Tue Jul 24 2012 - 06:22:00 CDT)
  • Nidhi Jatana (Tue Jul 24 2012 - 04:53:48 CDT)
• Converting electron density data from .map to .dx in vmd
  • Faisal, H M Nasrullah (Wed Oct 07 2020 - 09:48:20 CDT)
  • John Stone (Tue Oct 06 2020 - 23:52:59 CDT)
  • Faisal, H M Nasrullah (Tue Oct 06 2020 - 22:07:28 CDT)
  • John Stone (Tue Oct 06 2020 - 20:57:44 CDT)
  • JC Gumbart (Wed Sep 30 2020 - 13:35:30 CDT)
  • Faisal, H M Nasrullah (Wed Sep 30 2020 - 11:16:29 CDT)
  • Faisal, H M Nasrullah (Tue Sep 29 2020 - 08:54:29 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:36:57 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:33:26 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:56:46 CDT)
• Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:31:59 CDT)
  • Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:58:18 CDT)
• Converting Files with VMD
  • John Stone (Tue Jan 23 2007 - 17:47:54 CST)
  • mr.ibid_at_gmail.com (Sat Jan 20 2007 - 04:33:56 CST)
• Converting graphics to a pdb's coord system
  • Charles Moad (Thu Apr 14 2005 - 20:08:24 CDT)
  • John Stone (Thu Apr 14 2005 - 16:23:19 CDT)
  • Charles Moad (Wed Apr 13 2005 - 18:40:54 CDT)
  • John Stone (Wed Apr 13 2005 - 17:29:33 CDT)
  • Charles Moad (Tue Apr 12 2005 - 08:52:12 CDT)
  • Charles Moad (Sun Apr 10 2005 - 19:13:31 CDT)
• converting NAMD trajectories
  • GAGANJYOT KAUR BAKSHI (Tue Jul 25 2023 - 01:46:59 CDT)
• Converting namd trajectory to desmond trajectory
  • Hasdemir, Hale Siir (Wed Jun 14 2023 - 17:05:39 CDT)
  • GAGANJYOT KAUR BAKSHI (Wed Jun 14 2023 - 14:40:04 CDT)
  • Diego Gomes (Wed Jun 14 2023 - 14:33:50 CDT)
  • Hasdemir, Hale Siir (Tue Jun 13 2023 - 17:00:25 CDT)
  • GAGANJYOT KAUR BAKSHI (Tue Jun 13 2023 - 14:56:58 CDT)
• converting old LAMMPS ASCII dumps
  • Dan Lussier (Tue Aug 24 2010 - 12:59:40 CDT)
  • Axel Kohlmeyer (Tue Aug 24 2010 - 09:48:26 CDT)
  • Dan Lussier (Tue Aug 24 2010 - 09:38:11 CDT)
  • Axel Kohlmeyer (Mon Aug 23 2010 - 20:04:32 CDT)
  • Dan Lussier (Mon Aug 23 2010 - 19:08:01 CDT)
• converting pdb to xtc
  • L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 14:20:04 CST)
  • John Stone (Mon Feb 27 2006 - 11:13:22 CST)
  • Nuno R. L. Ferreira (Mon Feb 27 2006 - 10:50:16 CST)
  • L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 10:17:42 CST)
• Converting tracker coordinates to molecule coordinate for selection
  • Dipesh Bhattarai (Fri Feb 12 2010 - 11:57:03 CST)
  • John Stone (Fri Feb 12 2010 - 11:32:37 CST)
  • Dipesh Bhattarai (Fri Feb 12 2010 - 09:24:58 CST)
  • John Stone (Fri Feb 12 2010 - 00:26:09 CST)
  • Dipesh Bhattarai (Mon Feb 08 2010 - 10:57:03 CST)
• converting trajectory files with catdcd in command line
  • Axel Kohlmeyer (Fri Feb 20 2009 - 08:02:38 CST)
  • Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
• convex hull and VMD
  • John Stone (Mon Sep 28 1998 - 17:05:51 CDT)
  • Andrew Dalke (Mon Sep 28 1998 - 17:31:10 CDT)
• coordinate translation
  • John Stone (Tue Jun 27 2006 - 16:57:41 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Tue Jun 27 2006 - 11:04:28 CDT)
• COORDINATES extraction of molecule's centers of mass
  • John Stone (Wed Mar 28 2012 - 11:40:54 CDT)
  • VladanStefanovic_at_kg.ac.rs (Tue Mar 27 2012 - 01:37:23 CDT)
• coordinates of an atom
  • John Stone (Tue May 02 2006 - 11:22:37 CDT)
  • Axel Kohlmeyer (Tue May 02 2006 - 11:22:22 CDT)
  • John Stone (Tue May 02 2006 - 10:13:23 CDT)
  • Enzo Vitale (Tue May 02 2006 - 09:39:10 CDT)
• coordinates with get command
  • John Stone (Sat Aug 25 2007 - 23:04:51 CDT)
  • Nuno Loureiro Ferreira (Sat Aug 25 2007 - 23:27:28 CDT)
  • Nuno Loureiro Ferreira (Sat Aug 25 2007 - 18:10:02 CDT)
• coordinates: visual and in-file
  • Josh Vermaas (Wed Feb 19 2014 - 00:18:03 CST)
  • Chetan Mahajan (Tue Feb 18 2014 - 19:18:14 CST)
• CoordinateTransformation
  • Jim Phillips (Sun Sep 03 2006 - 21:59:46 CDT)
  • B.D Allen (Sun Sep 03 2006 - 20:38:38 CDT)
  • Neelanjana Sengupta (Sun Sep 03 2006 - 15:33:32 CDT)
  • Neelanjana Sengupta (Sun Sep 03 2006 - 15:34:48 CDT)
  • Neelanjana Sengupta (Sun Sep 03 2006 - 15:29:56 CDT)
• Copying a selection
  • Axel Kohlmeyer (Mon Mar 22 2004 - 12:56:30 CST)
  • Philip Fowler (Mon Mar 22 2004 - 02:42:02 CST)
  • Adam Marcus (Mon Mar 22 2004 - 01:04:29 CST)
• copying parts of an atomselect selection
  • Travis DePuy (Tue May 25 2004 - 07:10:54 CDT)
• Copying the new alpha sources of VMD into the installation directory
  • Faisal, H M Nasrullah (Tue Aug 25 2020 - 19:09:19 CDT)
• COR format and first residue
  • Chang, Christopher (Tue Sep 27 2005 - 18:31:32 CDT)
• COR plugin for SGI
  • Josh Ward (Fri Mar 05 2004 - 08:27:57 CST)
• core API?
  • John Stone (Wed Oct 26 2005 - 14:28:43 CDT)
  • Craig Maloney (Wed Oct 26 2005 - 13:46:38 CDT)
• core dump
  • John Stone (Mon Apr 24 2006 - 03:45:08 CDT)
  • Praveen Madala (Mon Apr 24 2006 - 03:14:15 CDT)
• core dump when launching vmd1.8a21
  • Margaret Cheung (Thu Oct 24 2002 - 21:05:30 CDT)
  • John Stone (Thu Oct 24 2002 - 20:36:16 CDT)
  • Margaret Cheung (Thu Oct 24 2002 - 20:31:28 CDT)
  • B. Bennion (Thu Oct 24 2002 - 20:30:05 CDT)
  • John Stone (Thu Oct 24 2002 - 19:55:21 CDT)
  • Margaret Cheung (Thu Oct 24 2002 - 19:49:42 CDT)
• core when using some features of vmd-xplor
  • John Stone (Thu May 06 2004 - 16:45:02 CDT)
  • Charles_at_Schwieters.org (Thu May 06 2004 - 16:03:01 CDT)
  • Pilar Saiz Vela (Thu May 06 2004 - 13:10:48 CDT)
• correct "origin" in VMD
  • John Stone (Mon Sep 16 2019 - 20:11:43 CDT)
  • Vermaas, Joshua (Mon Sep 16 2019 - 18:17:44 CDT)
  • Michael Morgan (Mon Sep 16 2019 - 16:44:47 CDT)
• Correlated motion
  • Axel Kohlmeyer (Wed Jun 28 2006 - 14:51:52 CDT)
  • Leyla Celik (Wed Jun 28 2006 - 11:19:27 CDT)
• correlation
  • Axel Kohlmeyer (Sun Mar 08 2009 - 10:33:03 CDT)
  • Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
• Correlation Functions
  • Neelanjana Sengupta (Tue Dec 12 2006 - 14:39:13 CST)
  • Juan Diaz (Tue Dec 12 2006 - 14:39:52 CST)
  • Juan Diaz (Tue Dec 12 2006 - 13:29:49 CST)
• Correlation matrix illustration via heating map
  • Maghsoud, Yazdan (Sun Aug 28 2022 - 11:08:11 CDT)
• corrigendum: error when solvating a system
  • L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:51:54 CDT)
• Corrupt cpmd-vmd.pdf File?
  • rossi_at_york.cuny.edu (Mon Aug 20 2007 - 20:03:02 CDT)
  • Axel Kohlmeyer (Thu Aug 09 2007 - 16:39:02 CDT)
  • rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:46:07 CDT)
  • rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:42:54 CDT)
• Could not load .nc file in MAC installed VMD
  • Prathit Chatterjee (Thu Mar 18 2021 - 01:46:47 CDT)
  • Mortimer Hemmit (Wed Mar 17 2021 - 12:45:15 CDT)
  • Prathit Chatterjee (Wed Mar 17 2021 - 03:03:39 CDT)
• Could not locate 'dowser' (Program not found message box)
  • John Stone (Thu Jan 17 2008 - 10:43:25 CST)
  • Stanley, Yemin Shi (Thu Jan 17 2008 - 07:31:22 CST)
• could not make avi file
  • John Stone (Tue Apr 13 2004 - 13:33:33 CDT)
  • Albert Sun (Tue Apr 13 2004 - 10:58:49 CDT)
• could not read file no atoms found error
  • RAHUL SURESH (Thu Jan 23 2020 - 05:17:37 CST)
  • Ashar Malik (Thu Jan 23 2020 - 05:13:57 CST)
  • Adupa Vasista (Thu Jan 23 2020 - 04:51:21 CST)
  • Yogesh Sharma (Thu Jan 23 2020 - 02:56:10 CST)
• Could not read file problem
  • PaweÅ‚ KÄ™dzierski (Fri Jul 23 2021 - 10:55:22 CDT)
  • Chris Neale (Fri Jul 23 2021 - 09:42:54 CDT)
  • Vermaas, Josh (Fri Jul 23 2021 - 08:39:58 CDT)
  • Igor Gordiy (Fri Jul 23 2021 - 04:33:46 CDT)
• could not visualize DCD file downloaded from VMD website
  • Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
  • Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
  • Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
  • Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
• couldn't execute "psfgen": no such file or directory
  • John Stone (Thu Dec 10 2015 - 11:34:05 CST)
  • zeynab hoseyni (Wed Dec 09 2015 - 12:50:37 CST)
  • Axel Kohlmeyer (Mon Dec 07 2015 - 07:03:19 CST)
  • zeynab hoseyni (Sun Dec 06 2015 - 07:46:33 CST)
  • Axel Kohlmeyer (Sun Dec 06 2015 - 07:26:56 CST)
  • zeynab hoseyni (Sun Dec 06 2015 - 07:02:21 CST)
• couldn't fork child process: not enough memory
  • jrui_at_ci.uc.pt (Fri Feb 22 2008 - 08:41:54 CST)
  • Peter Freddolino (Fri Feb 22 2008 - 06:48:23 CST)
  • jrui_at_ci.uc.pt (Fri Feb 22 2008 - 05:13:16 CST)
  • John Stone (Thu Feb 21 2008 - 15:39:30 CST)
  • Axel Kohlmeyer (Thu Feb 21 2008 - 15:28:16 CST)
  • jrui_at_ci.uc.pt (Thu Feb 21 2008 - 13:47:06 CST)
• Couldn't load the trajectory on to vmd
  • Lutz Maibaum (Tue May 12 2015 - 13:40:07 CDT)
  • Seera Suryanarayana (Tue May 12 2015 - 03:34:21 CDT)
• Couldn't locate ppmtompeg
  • Axel Kohlmeyer (Thu Nov 10 2011 - 15:47:31 CST)
  • Magnus Andersson (Thu Nov 10 2011 - 16:03:41 CST)
  • Rabab Toubar (Thu Nov 10 2011 - 14:57:58 CST)
• couldn't open "c:/multiseq-406080740227.start.domain": invalid argument
  • Maurice O'Connell (Thu Feb 21 2008 - 12:30:26 CST)
• Couldn't open required GL library
  • John Stone (Fri Aug 16 2002 - 15:13:30 CDT)
  • John Stone (Fri Aug 16 2002 - 14:40:18 CDT)
  • John Stone (Fri Aug 09 2002 - 15:32:33 CDT)
  • J. Rui Rodrigues (Thu Aug 08 2002 - 18:48:37 CDT)
• Couldn't read internal coordinate table and list index out of range
  • Ruijie Darius Teo (Tue Feb 23 2021 - 20:23:57 CST)
  • Gumbart, JC (Tue Feb 23 2021 - 19:28:33 CST)
  • Ruijie Darius Teo (Tue Feb 23 2021 - 19:24:42 CST)
  • Gumbart, JC (Tue Feb 23 2021 - 19:00:32 CST)
  • Ruijie Darius Teo (Tue Feb 23 2021 - 13:58:49 CST)
• count CLA number from different frames
  • JC Gumbart (Fri Mar 11 2011 - 20:47:02 CST)
  • emiliawu_at_dicp.ac.cn (Sat Mar 12 2011 - 07:16:32 CST)
• count variable number of molecules
  • John Stone (Wed Mar 07 2007 - 16:45:56 CST)
  • Alexandr Isayev (Wed Feb 28 2007 - 14:23:11 CST)
• Count waters inside a specified box
  • Manish (Wed Sep 07 2011 - 09:19:55 CDT)
  • Jérôme Hénin (Wed Sep 07 2011 - 06:18:06 CDT)
  • Manish (Tue Sep 06 2011 - 11:11:40 CDT)
• counting gas molecules inside the nanotube
  • bo liu (Fri Sep 19 2008 - 11:38:19 CDT)
  • John Stone (Thu Sep 18 2008 - 12:29:34 CDT)
  • Alexander A. Vakhrushev (Thu Sep 18 2008 - 12:11:04 CDT)
  • John Stone (Thu Sep 18 2008 - 11:18:43 CDT)
  • mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
• Counting H-bonds from a dcd file
  • Axel Kohlmeyer (Tue Aug 29 2006 - 19:16:19 CDT)
  • Nitin Bhardwaj (Tue Aug 29 2006 - 18:15:56 CDT)
  • Axel Kohlmeyer (Tue Aug 29 2006 - 17:42:56 CDT)
  • Nitin Bhardwaj (Tue Aug 29 2006 - 17:06:21 CDT)
• Counting number of hydrogen bonds in the representation
  • Uday K. Chippada (Wed Sep 15 2004 - 13:21:59 CDT)
  • Justin Gullingsrud (Wed Sep 15 2004 - 07:30:39 CDT)
  • Ahmet Bakan (Wed Sep 15 2004 - 07:44:29 CDT)
  • Ahmet Bakan (Wed Sep 15 2004 - 03:39:56 CDT)
  • Uday K. Chippada (Tue Sep 14 2004 - 16:38:20 CDT)
• Counting number of water molecules
  • Bernardo Sosa Padilla Araujo (Thu Dec 10 2009 - 18:48:20 CST)
  • Andrew Dalke (Wed Dec 09 2009 - 17:20:43 CST)
  • Axel Kohlmeyer (Wed Dec 09 2009 - 17:32:07 CST)
  • Bernardo Sosa Padilla Araujo (Wed Dec 09 2009 - 16:30:13 CST)
• counting selected atoms---selection time series
  • Jérôme Hénin (Thu Sep 01 2005 - 02:05:32 CDT)
  • Axel Kohlmeyer (Thu Sep 01 2005 - 01:16:43 CDT)
  • Daniel Barsky (Wed Aug 31 2005 - 12:57:32 CDT)
• counting specific atom types
  • Axel Kohlmeyer (Tue May 08 2012 - 09:24:20 CDT)
  • Ana Celia Vila Verde (Tue May 08 2012 - 09:31:23 CDT)
  • winardi, erik (Tue May 08 2012 - 08:37:01 CDT)
• Counting the number of ligand molecules around my protein
  • Josh Vermaas (Thu Apr 16 2020 - 11:42:08 CDT)
  • amin sagar (Thu Apr 16 2020 - 11:30:24 CDT)
  • Akash Pandya (Thu Apr 16 2020 - 10:27:16 CDT)
  • Adupa Vasista (Thu Apr 16 2020 - 09:44:21 CDT)
  • Akash Pandya (Thu Apr 16 2020 - 09:22:00 CDT)
  • Adupa Vasista (Thu Apr 16 2020 - 08:24:27 CDT)
  • Akash Pandya (Thu Apr 16 2020 - 07:17:02 CDT)
• Counting water transition through a channel
  • nicolas martin (Thu Mar 19 2015 - 09:29:20 CDT)
  • Adelman, Joshua Lev (Thu Mar 19 2015 - 08:29:51 CDT)
  • nicolas martin (Thu Mar 19 2015 - 03:04:26 CDT)
• covalent atomic radii customization
  • John Stone (Wed Oct 21 2020 - 13:42:10 CDT)
  • fulvio ciriaco (Thu Oct 08 2020 - 14:18:30 CDT)
• covalent bond
  • Alexei Rossokhin (Wed Jul 05 2023 - 09:18:37 CDT)
• covalently bonded atoms
  • Axel Kohlmeyer (Mon Oct 12 2009 - 12:41:31 CDT)
  • politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
• cp: cannot stat `../LINUXAMD64/vmd_LINUXAMD64': No such file or directory
  • Axel Kohlmeyer (Mon Mar 18 2013 - 11:00:26 CDT)
  • §õ¤å¤Z (Mon Mar 18 2013 - 09:16:44 CDT)
• CPK Graphical Representation
  • Jawahar Neelankatan (Fri Oct 20 2006 - 19:05:49 CDT)
  • Alexandr Isayev (Fri Oct 20 2006 - 11:48:40 CDT)
  • Axel Kohlmeyer (Fri Oct 20 2006 - 11:48:23 CDT)
  • Axel Kohlmeyer (Fri Oct 20 2006 - 10:40:46 CDT)
  • Jawahar Neelankatan (Fri Oct 20 2006 - 05:57:20 CDT)
• cpptraj-nastruct + VMD
  • Thomas C. Bishop (Wed May 25 2016 - 18:30:18 CDT)
• CPU comparison
  • Gianluca Interlandi (Fri May 20 2016 - 22:09:16 CDT)
• Crack generation in Grapehene sheet
  • Giacomo Fiorin (Tue Dec 19 2017 - 07:49:40 CST)
  • sumit nagar (Tue Dec 19 2017 - 03:56:32 CST)
• crash on ubuntu linux
  • Sabuj Pattanayek (Sun Sep 04 2005 - 13:32:25 CDT)
  • Jay McAliley (Sat Sep 03 2005 - 11:41:59 CDT)
• crash with 1.9.2 and not with 1.9.1
  • John Stone (Thu Apr 09 2015 - 09:40:36 CDT)
  • andrea spitaleri (Thu Apr 09 2015 - 08:23:58 CDT)
  • Axel Kohlmeyer (Thu Apr 09 2015 - 08:16:24 CDT)
  • andrea spitaleri (Thu Apr 09 2015 - 08:14:50 CDT)
  • Axel Kohlmeyer (Thu Apr 09 2015 - 07:44:43 CDT)
  • andrea spitaleri (Thu Apr 09 2015 - 07:14:52 CDT)
• Crash with molfile plugin when doing "Load data into molecule"
  • Axel Kohlmeyer (Fri Jan 24 2014 - 05:26:53 CST)
  • Daniel Russel (Thu Jan 23 2014 - 23:23:06 CST)
• Crating 3D PDF files
  • John Stone (Mon Apr 17 2017 - 08:46:11 CDT)
  • James Kress (Tue Apr 11 2017 - 13:36:56 CDT)
• CRD problems and CRD to DCD conversion
  • Mark Zottola - Contractor (Wed Nov 13 2002 - 16:04:39 CST)
  • B. Bennion (Wed Nov 13 2002 - 15:48:57 CST)
  • John Stone (Wed Nov 13 2002 - 15:06:39 CST)
  • Mark Zottola - Contractor (Wed Nov 13 2002 - 14:59:33 CST)
• Create a new color category
  • John Stone (Wed Jun 22 2005 - 14:19:38 CDT)
  • John Stone (Tue Jun 21 2005 - 15:52:39 CDT)
  • Dow Hurst DPHURST (Tue Jun 21 2005 - 12:25:52 CDT)
• Create a PSF
  • Peter Freddolino (Fri Sep 21 2007 - 07:27:34 CDT)
  • Peter Freddolino (Fri Sep 21 2007 - 06:57:23 CDT)
  • Èùìáò Åõáããåëéäçò (Fri Sep 21 2007 - 06:12:49 CDT)
  • Andrea.Cristiani_at_pharm.unige.ch (Fri Sep 21 2007 - 04:16:37 CDT)
• create and operate a point in space
  • Axel Kohlmeyer (Wed Oct 09 2013 - 06:29:51 CDT)
  • sunyeping (Wed Oct 09 2013 - 05:15:44 CDT)
• Create atom selection from list of integers
  • Claw Isthelaw (Mon Jun 02 2008 - 13:10:12 CDT)
  • Joaquim Rui Rodrigues (Mon Jun 02 2008 - 12:10:28 CDT)
  • Leonardo Trabuco (Mon Jun 02 2008 - 11:15:58 CDT)
  • Leonardo Trabuco (Mon Jun 02 2008 - 11:51:09 CDT)
  • Axel Kohlmeyer (Mon Jun 02 2008 - 11:08:16 CDT)
  • Claw Isthelaw (Mon Jun 02 2008 - 11:01:49 CDT)
• Create Binding Pocket of Every PDB File In A Directory Using TCL Scripts and Atomselect Command protein and within 4 of resname LIG
  • Ashar Malik (Mon Jul 20 2020 - 16:06:03 CDT)
  • Bassam Haddad (Mon Jul 20 2020 - 13:31:24 CDT)
  • Bassam Haddad (Mon Jul 20 2020 - 12:58:36 CDT)
  • William Howe (Mon Jul 20 2020 - 11:12:54 CDT)
• Create bonds in VMD
  • Giacomo Fiorin (Tue Apr 11 2023 - 16:16:29 CDT)
  • Rajorshi Chattopadhyay (Tue Apr 11 2023 - 15:21:54 CDT)
• create bonds with uniform pairwise cut off radius for XYZ trajectories.
  • Axel Kohlmeyer (Fri Sep 26 2014 - 06:47:40 CDT)
  • Axel Kohlmeyer (Fri Sep 26 2014 - 06:46:27 CDT)
  • khannan krishna (Fri Sep 26 2014 - 06:14:22 CDT)
  • khannan krishna (Fri Sep 26 2014 - 05:05:52 CDT)
  • Axel Kohlmeyer (Fri Sep 26 2014 - 03:59:32 CDT)
  • khannan krishna (Fri Sep 26 2014 - 00:48:04 CDT)
• Create CHARMM COR files with VMD
  • Axel Kohlmeyer (Tue Jul 26 2022 - 12:09:13 CDT)
  • Prathit Chatterjee (Tue Jul 26 2022 - 08:50:27 CDT)
• Create covalent bonds between 2 atoms via Tk console
  • Josh Vermaas (Mon May 25 2020 - 11:19:29 CDT)
  • Hélder Bandarra Tavares (Mon May 25 2020 - 09:29:15 CDT)
• create images in vmd
  • Axel Kohlmeyer (Fri Feb 03 2012 - 06:34:53 CST)
  • oguz gurbulak (Fri Feb 03 2012 - 06:21:28 CST)
  • oguz gurbulak (Fri Feb 03 2012 - 05:34:54 CST)
• create movie from multiple frames
  • Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
• Create multiple tcl interpreter child instances within VMD to run several scripts at once
  • Axel Kohlmeyer (Thu Feb 16 2012 - 12:46:48 CST)
  • Salvatore Mario Cosseddu (Thu Feb 16 2012 - 12:04:17 CST)
  • John Stone (Thu Feb 16 2012 - 11:52:15 CST)
  • Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:49:55 CST)
  • Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:23:15 CST)
  • John Stone (Thu Feb 16 2012 - 11:40:11 CST)
• Create new atoms
  • John Stone (Wed Nov 07 2018 - 14:30:01 CST)
  • Axel Kohlmeyer (Wed Nov 07 2018 - 14:32:13 CST)
  • Michail Lazaratos (Wed Nov 07 2018 - 13:45:21 CST)
• create new colors
  • Justin Gullingsrud (Fri Mar 08 2002 - 11:39:58 CST)
  • Fei Xu (Thu Mar 07 2002 - 10:49:25 CST)
• create new topology file for new molecule
  • _at_huji.ac.il (Tue Jan 09 2007 - 10:06:25 CST)
• create new topology file for new molecule]
  • Peter Freddolino (Wed Jan 10 2007 - 08:51:29 CST)
  • Axel Kohlmeyer (Wed Jan 10 2007 - 08:39:17 CST)
  • _at_huji.ac.il (Wed Jan 10 2007 - 03:01:50 CST)
  • Peter Freddolino (Tue Jan 09 2007 - 11:11:04 CST)
• create psf and dcd from pdb
  • Peter Freddolino (Tue Aug 14 2007 - 10:56:07 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Aug 14 2007 - 10:25:15 CDT)
  • Èùìáò Åõáããåëéäçò (Mon Aug 13 2007 - 16:26:27 CDT)
  • Peter Freddolino (Mon Aug 13 2007 - 17:35:01 CDT)
• create psf file without hydrogens
  • Revthi Sanker (Fri Nov 21 2014 - 03:23:41 CST)
  • Josh Vermaas (Thu Nov 20 2014 - 13:55:24 CST)
  • Revthi Sanker (Thu Nov 20 2014 - 12:26:13 CST)
• Create Straight Peptide Molefacture Protein Builder
  • Miro Astore (Sat Oct 12 2019 - 17:14:12 CDT)
  • Mortimer Hemmit (Sat Oct 12 2019 - 16:31:04 CDT)
• create surface of overlapping VdW volume
  • Dow Hurst (Sat Jun 11 2011 - 11:08:43 CDT)
  • Dow Hurst (Fri Jun 10 2011 - 18:17:50 CDT)
• Creating 3D PDF files
  • James Kress (Wed Apr 19 2017 - 09:06:56 CDT)
• Creating a .tpr file from NAMD files Error
  • Ethan Croitoru (Wed Aug 05 2020 - 13:30:05 CDT)
  • Josh Vermaas (Wed Aug 05 2020 - 13:45:27 CDT)
  • Josh Vermaas (Wed Aug 05 2020 - 11:54:56 CDT)
  • Ethan Croitoru (Wed Aug 05 2020 - 10:23:49 CDT)
• Creating a constraints file(.pdb) from NMR constraints file(.mr)
  • Nick Palmer (Thu May 24 2018 - 15:40:08 CDT)
• Creating a cuboid box to fit in atoms
  • Leandro Martínez (Thu Sep 25 2008 - 14:51:00 CDT)
  • Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
• Creating a demo - updating the OpenGL window
  • John Stone (Mon Jun 20 2005 - 14:40:54 CDT)
  • Palmer, Teresa (Mon Jun 20 2005 - 14:30:22 CDT)
• Creating a fragment of the given protein
  • JC Gumbart (Mon Sep 19 2011 - 01:56:14 CDT)
  • Trung Nguyen Duc (Sun Sep 18 2011 - 11:43:18 CDT)
• creating a modified pdb/psf file
  • Axel Kohlmeyer (Tue Aug 14 2012 - 07:25:42 CDT)
  • Monika Madhavi (Tue Aug 14 2012 - 07:11:33 CDT)
  • Sean T Kigerl (Tue Aug 14 2012 - 00:43:26 CDT)
• Creating a pdb of periodic images of a unit cell
  • Vermaas, Joshua (Wed Nov 21 2018 - 11:43:43 CST)
  • Devanand T (Wed Nov 21 2018 - 00:19:11 CST)
  • Monika Madhavi (Tue Nov 20 2018 - 23:19:09 CST)
• creating a povray file
  • John Stone (Wed Feb 17 2010 - 16:07:16 CST)
  • gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 15:56:34 CST)
  • gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 10:44:02 CST)
  • John Stone (Wed Feb 17 2010 - 10:51:44 CST)
• Creating a Regular Structure
  • Fatemesadat Emami (Wed Jan 22 2014 - 18:03:05 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 18:06:39 CST)
  • Fatemesadat Emami (Wed Jan 22 2014 - 17:59:10 CST)
  • Fatemesadat Emami (Wed Jan 22 2014 - 17:38:31 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 17:48:18 CST)
• Creating a VMD movie from a Tcl script
  • John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
  • Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
  • John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
  • Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
  • Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
  • Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
  • John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
  • Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
  • Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
  • Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
  • John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
  • Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
  • Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
  • John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
  • John Stone (Thu Jul 17 2008 - 21:56:35 CDT)
  • Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
  • John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
  • Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
• creating an index file for POPC in water
  • Fotis Baltoumas (Fri Oct 03 2014 - 15:24:52 CDT)
  • Mihaela Drenscko (Fri Oct 03 2014 - 13:57:31 CDT)
• creating and appending to DCD in VMD
  • Nicholas Musolino (Thu Apr 08 2010 - 17:04:40 CDT)
  • Nicholas Musolino (Thu Apr 08 2010 - 15:50:04 CDT)
  • John Stone (Thu Apr 08 2010 - 16:18:41 CDT)
• Creating and using a tk button
  • Ali Morshedi (Tue Apr 09 2019 - 01:22:22 CDT)
  • Joao Ribeiro (Mon Apr 08 2019 - 07:25:50 CDT)
  • Ali Morshedi (Sun Apr 07 2019 - 03:34:39 CDT)
• Creating AVI movies
  • Bjoern Olausson (Mon May 10 2010 - 08:37:58 CDT)
  • Axel Kohlmeyer (Mon May 10 2010 - 08:21:13 CDT)
  • David Poger (Mon May 10 2010 - 07:28:24 CDT)
• Creating bond between two atoms
  • Nitin Bhardwaj (Tue Oct 25 2005 - 16:09:00 CDT)
  • John Stone (Mon Oct 24 2005 - 17:20:52 CDT)
  • Nitin Bhardwaj (Fri Oct 21 2005 - 13:33:00 CDT)
  • Sergio Anis (Fri Oct 21 2005 - 13:27:36 CDT)
  • John Stone (Fri Oct 21 2005 - 12:32:44 CDT)
  • Nitin Bhardwaj (Fri Oct 21 2005 - 12:05:09 CDT)
• Creating bonds using VMD
  • John Stone (Sun Apr 11 2010 - 23:07:21 CDT)
  • Mihir Tungare (Mon Mar 29 2010 - 16:34:21 CDT)
• Creating boxes of different water models
  • Axel Kohlmeyer (Sun May 24 2015 - 04:06:30 CDT)
  • Monika Madhavi (Sun May 24 2015 - 02:17:21 CDT)
• Creating Carbon Nano-tube psf file..
  • zeynab hoseyni (Sun Feb 28 2016 - 06:32:00 CST)
• creating chiral molecules
  • Ajasja LjubetiÄ� (Thu Jul 28 2011 - 05:09:29 CDT)
  • Peyman Z.Moghadam (Thu Jul 28 2011 - 04:21:16 CDT)
• Creating custom molecule in VMD scripting
  • Joaquim Rui de Castro Rodrigues (Tue Oct 29 2013 - 06:45:08 CDT)
  • Axel Kohlmeyer (Tue Oct 29 2013 - 05:36:28 CDT)
  • Luká¹ Pravda (Tue Oct 29 2013 - 04:40:29 CDT)
• Creating data file for triclinic system
  • Axel Kohlmeyer (Wed Jul 23 2014 - 07:03:17 CDT)
  • Bonakala Satyanarayana (Wed Jul 23 2014 - 01:40:58 CDT)
• Creating Dummy Atoms in VMD Using TCL Script
  • Smith, Harper E. (Fri Oct 27 2023 - 15:40:40 CDT)
  • Kevin Lin (Fri Oct 27 2023 - 15:16:45 CDT)
• creating gif animation with povray
  • John Stone (Mon Feb 05 2007 - 09:56:28 CST)
  • Vlad Cojocaru (Mon Feb 05 2007 - 03:48:54 CST)
  • John Stone (Sat Feb 03 2007 - 00:54:16 CST)
  • Vlad Cojocaru (Fri Feb 02 2007 - 04:09:12 CST)
• creating high quality movie in VMD
  • Shomesankar Bhunia (Mon Nov 11 2013 - 07:04:45 CST)
  • John Stone (Sat Nov 09 2013 - 17:39:20 CST)
  • Shomesankar Bhunia (Sat Nov 09 2013 - 12:57:10 CST)
• Creating length dependent coloured bonds in VMD
  • Axel Kohlmeyer (Tue Mar 30 2010 - 15:12:28 CDT)
  • Willie Maddox (Tue Mar 30 2010 - 14:17:33 CDT)
• creating model helices
  • Ajasja LjubetiÄ� (Mon Jun 27 2011 - 07:10:23 CDT)
  • Neelanjana Sengupta (Mon Jun 27 2011 - 06:31:03 CDT)
• creating movie files
  • John Stone (Fri Aug 12 2005 - 10:58:16 CDT)
  • Jaime Sanchez (Fri Aug 12 2005 - 08:34:15 CDT)
• Creating multiple views from same trajectory file for movie generation
  • Michael Doig (Fri Oct 03 2014 - 05:45:02 CDT)
  • Felipe Merino (Wed Oct 01 2014 - 08:36:35 CDT)
  • John Stone (Wed Oct 01 2014 - 07:43:22 CDT)
  • Michael Doig (Wed Oct 01 2014 - 07:25:04 CDT)
• creating nonstandard solvent
  • Peter Freddolino (Fri Oct 05 2007 - 10:01:12 CDT)
  • Nicolas Belloy (Fri Oct 05 2007 - 09:16:30 CDT)
  • lucie huynh (Wed Oct 03 2007 - 07:53:21 CDT)
  • Peter Freddolino (Wed Oct 03 2007 - 08:19:30 CDT)
  • Leandro Martínez (Wed Oct 03 2007 - 08:35:19 CDT)
  • Peter Freddolino (Wed Oct 03 2007 - 08:23:07 CDT)
• Creating PDB files of binding pockets that lists ligands first within the file
  • Ashar Malik (Tue Feb 02 2021 - 19:22:51 CST)
  • William Howe (Tue Feb 02 2021 - 18:14:55 CST)
• creating periodic images of an atom
  • Mgr. Lubos Vrbka (Mon Jan 23 2006 - 08:22:43 CST)
  • John Stone (Fri Jan 20 2006 - 14:39:57 CST)
  • Mgr. Lubos Vrbka (Thu Jan 19 2006 - 01:58:15 CST)
  • John Stone (Wed Jan 18 2006 - 17:08:27 CST)
  • Mgr. Lubos Vrbka (Wed Jan 18 2006 - 08:08:41 CST)
• creating psf file
  • John Stone (Tue Jul 14 2015 - 10:57:08 CDT)
  • Mai Aamer (Tue Jul 07 2015 - 16:10:29 CDT)
  • John Stone (Fri May 27 2011 - 14:37:59 CDT)
  • seda demirci (Fri May 27 2011 - 10:13:05 CDT)
  • Eduard Schreiner (Sun Sep 19 2010 - 21:39:29 CDT)
  • John Stone (Sun Sep 19 2010 - 20:09:03 CDT)
  • unni kuttan (Mon Aug 30 2010 - 12:14:15 CDT)
• Creating psf file for graphene sheet
  • Monika Madhavi (Thu Aug 02 2012 - 04:10:07 CDT)
• Creating PSF from PDB files
  • Shehan Parmar (Thu Sep 07 2017 - 22:15:34 CDT)
• creating psf from pgn
  • John Stone (Tue Apr 29 2008 - 16:09:24 CDT)
  • S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
• creating psf with trimethoprim
  • Charles Moad (Wed May 11 2005 - 21:38:14 CDT)
• creating scripts
  • Chang, Christopher (Fri Jun 03 2005 - 17:50:51 CDT)
  • Mark A. Hallman (Fri Jun 03 2005 - 16:00:54 CDT)
• creating SiO2 device with Inorganic Builder
  • Marzieh Alishahi (Sat Nov 17 2012 - 02:36:22 CST)
• creating spherical water droplet
  • Justin Gullingsrud (Fri Dec 27 2002 - 09:46:09 CST)
  • Rukman Hertadi (Thu Dec 26 2002 - 19:41:52 CST)
• Creating surfaces with desired lengths- Inorganic Builder
  • Monika Madhavi (Mon Aug 06 2012 - 23:26:37 CDT)
• creating the center of mass pdb file
  • Ashar Malik (Tue Feb 28 2017 - 15:27:07 CST)
  • Mehdi Bagherpour (Tue Feb 28 2017 - 13:22:23 CST)
• creating topology for a unique structure
  • soroush ziaei (Sun Nov 04 2018 - 05:49:31 CST)
• Creating very large solvation boxes
  • Ajasja LjubetiÄ� (Thu Oct 03 2013 - 09:06:37 CDT)
  • John Grime (Thu Oct 03 2013 - 07:36:44 CDT)
  • Josh Vermaas (Wed Oct 02 2013 - 19:47:40 CDT)
  • John Grime (Wed Oct 02 2013 - 16:45:14 CDT)
  • John Grime (Fri Sep 20 2013 - 12:12:45 CDT)
• creating videos where the representation changes throughout
  • John Stone (Thu Feb 19 2009 - 23:45:17 CST)
  • Brian Kidd (Thu Feb 19 2009 - 23:30:20 CST)
• Creating VR-movies with tachyon renderer
  • John Stone (Thu Mar 15 2018 - 00:03:16 CDT)
  • Per Larsson (Thu Mar 08 2018 - 03:49:38 CST)
  • Dallas Warren (Wed Mar 07 2018 - 16:04:53 CST)
  • Dallas Warren (Wed Mar 07 2018 - 16:10:17 CST)
  • Per Larsson (Wed Mar 07 2018 - 14:24:31 CST)
  • Vermaas, Joshua (Wed Mar 07 2018 - 12:20:30 CST)
  • Per Larsson (Wed Mar 07 2018 - 08:09:49 CST)
  • Per Larsson (Wed Mar 07 2018 - 02:09:16 CST)
  • Dallas Warren (Tue Mar 06 2018 - 14:23:07 CST)
  • Vermaas, Joshua (Tue Mar 06 2018 - 11:53:35 CST)
  • Per Larsson (Tue Mar 06 2018 - 06:52:54 CST)
• creation of psf
  • t.shivam_at_iitg.ernet.in (Thu Nov 30 2017 - 22:10:49 CST)
  • Vermaas, Joshua (Thu Nov 30 2017 - 13:15:38 CST)
  • t.shivam_at_iitg.ernet.in (Mon Nov 27 2017 - 02:40:53 CST)
• Creation of SiC NP
  • Francesco Coppola (Fri Oct 08 2021 - 11:37:59 CDT)
• Creation of Thin Amorphous SiO2 using Inorganic Builder-VMD
  • Sina Zarepakzad (Fri Jul 19 2019 - 07:32:39 CDT)
• criteria for detecting hydrogen bonds
  • Michel Espinoza-Fonseca (Sun Apr 17 2005 - 19:41:29 CDT)
  • Amarda Shehu (Sun Apr 17 2005 - 18:14:21 CDT)
• criteria for hydrogen bonds.
  • Kristine Manibog (Tue Apr 23 2013 - 19:39:17 CDT)
• cropping the missing residues from other PDB file
  • sarah k (Mon Jun 13 2011 - 10:19:05 CDT)
  • Joyce Tan (Mon Jun 13 2011 - 09:37:14 CDT)
• Cross correlation
  • John Stone (Thu Dec 05 2019 - 16:44:33 CST)
  • Vermaas, Joshua (Tue Dec 03 2019 - 11:12:45 CST)
  • Paula Mihaljevic-Juric (Tue Dec 03 2019 - 08:17:02 CST)
• cross correlation in VMD
  • Simon Whitehead (Mon Dec 12 2005 - 12:19:30 CST)
• Cross-correlation coefficient calculated MDFF package
  • Ryan McGreevy (Mon Feb 09 2015 - 10:36:55 CST)
  • Kevin C Chan (Mon Feb 09 2015 - 06:47:21 CST)
• Crosseye stereo image rendering
  • John Kerrigan (Tue Feb 01 2005 - 18:20:27 CST)
  • Wang, Yangzhou (Tue Feb 01 2005 - 16:43:24 CST)
  • John Stone (Tue Feb 01 2005 - 15:32:03 CST)
  • Wang, Yangzhou (Tue Feb 01 2005 - 15:06:07 CST)
• crystal eyes vmd
  • John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
  • Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
  • John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
  • John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
  • John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
  • Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
• Crystal water
  • Axel Kohlmeyer (Thu May 22 2008 - 05:23:24 CDT)
  • INPE (Ingrid Viveka Pettersson) (Thu May 22 2008 - 04:32:59 CDT)
• crystallographic symmetry tool
  • Daniel Barsky (Wed Dec 05 2001 - 19:11:35 CST)
• cube file question
  • Axel Kohlmeyer (Fri Jan 09 2009 - 08:23:16 CST)
  • Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
• cube file: coordinates rotated
  • Axel Kohlmeyer (Thu Feb 22 2007 - 09:07:28 CST)
  • Yaser Khan (Wed Feb 21 2007 - 20:05:32 CST)
• Cube Files - proportion of the electron density
  • Axel Kohlmeyer (Tue Oct 09 2007 - 16:40:25 CDT)
  • John Stone (Tue Oct 09 2007 - 14:38:06 CDT)
  • Jay Shore (Tue Oct 09 2007 - 14:10:35 CDT)
  • Axel Kohlmeyer (Sun Oct 07 2007 - 18:14:00 CDT)
  • Jay Shore (Sun Oct 07 2007 - 15:50:40 CDT)
• CUBIC box of system
  • Axel Kohlmeyer (Thu Jun 03 2004 - 12:44:37 CDT)
  • Ran Friedman (Thu Jun 03 2004 - 14:56:23 CDT)
  • Axel Kohlmeyer (Thu Jun 03 2004 - 07:22:09 CDT)
  • Raghunadha Reddy Burri (Thu Jun 03 2004 - 03:24:54 CDT)
• CUDA 10
  • Jérôme Hénin (Thu Nov 22 2018 - 11:30:53 CST)
  • John Stone (Thu Nov 22 2018 - 09:12:31 CST)
  • Jérôme Hénin (Thu Nov 22 2018 - 06:47:27 CST)
• CUDA acceleration for Tachyon rendering?
  • Eiros Zamora, Juan (Fri Dec 02 2016 - 04:48:37 CST)
  • Vermaas, Joshua (Thu Dec 01 2016 - 15:20:44 CST)
  • John Stone (Thu Dec 01 2016 - 15:06:03 CST)
  • Eiros Zamora, Juan (Thu Dec 01 2016 - 13:41:59 CST)
• Cuda an a cluster ?
  • Christian Wohlschlager (Fri Oct 23 2009 - 00:20:59 CDT)
  • John Stone (Thu Oct 22 2009 - 11:04:45 CDT)
  • Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
• CUDA cores seen by VMD on GT540M
  • PaweÅ‚ KÄ™dzierski (Thu Sep 01 2011 - 08:07:26 CDT)
  • John Stone (Wed Aug 31 2011 - 10:19:39 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 10:17:39 CDT)
  • Pawe³ Kêdzierski (Wed Aug 31 2011 - 09:02:09 CDT)
• CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ?
  • Joshua A. Anderson (Wed Jan 25 2012 - 14:50:27 CST)
  • John Stone (Wed Jan 25 2012 - 09:59:13 CST)
  • Axel Kohlmeyer (Thu Jan 19 2012 - 13:55:04 CST)
  • Joshua A. Anderson (Thu Jan 19 2012 - 14:02:42 CST)
  • John Stone (Thu Jan 19 2012 - 13:07:25 CST)
  • Joshua A. Anderson (Thu Jan 19 2012 - 12:47:21 CST)
  • John Stone (Fri Jan 13 2012 - 14:52:45 CST)
  • John Stone (Thu Jan 12 2012 - 10:48:06 CST)
  • Joshua D. Moore (Wed Jan 11 2012 - 19:09:50 CST)
  • John Stone (Thu Jan 05 2012 - 15:14:17 CST)
  • Joshua D. Moore (Fri Dec 30 2011 - 19:07:05 CST)
  • Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
• CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu
  • Chris Taylor (Mon Apr 17 2023 - 22:40:59 CDT)
  • John Stone (Mon Apr 17 2023 - 11:13:20 CDT)
  • Chris Taylor (Mon Apr 10 2023 - 20:08:42 CDT)
  • John Stone (Mon Apr 10 2023 - 00:58:11 CDT)
  • Chris Taylor (Sun Apr 09 2023 - 22:07:14 CDT)
• CUDA errors for graphics card in Linux
  • John Stone (Wed May 28 2014 - 16:09:48 CDT)
  • Matthew J. Comstock (Wed May 28 2014 - 16:07:29 CDT)
  • John Stone (Wed May 28 2014 - 14:35:00 CDT)
  • John Stone (Wed May 28 2014 - 14:33:45 CDT)
  • Matthew J. Comstock (Wed May 28 2014 - 14:06:23 CDT)
• CUDA issues
  • John Stone (Mon Mar 08 2010 - 11:19:00 CST)
  • Filippo Federici (Fri Mar 05 2010 - 01:38:40 CST)
  • John Stone (Thu Mar 04 2010 - 13:54:49 CST)
  • Axel Kohlmeyer (Thu Mar 04 2010 - 13:16:58 CST)
  • Filippo Federici Canova (Thu Mar 04 2010 - 11:54:09 CST)
  • Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
  • John Stone (Thu Mar 04 2010 - 10:32:06 CST)
  • John Stone (Thu Mar 04 2010 - 08:11:53 CST)
  • Filippo Federici (Thu Mar 04 2010 - 01:18:14 CST)
• CUDA out of memory
  • Ajasja LjubetiÄ� (Mon Mar 15 2010 - 04:41:14 CDT)
  • John Stone (Mon Mar 15 2010 - 10:20:37 CDT)
  • John Stone (Fri Mar 12 2010 - 09:02:19 CST)
  • Ajasja LjubetiÄ� (Fri Mar 12 2010 - 08:22:40 CST)
• CUDA Support
  • John Stone (Tue Aug 18 2009 - 01:18:10 CDT)
  • Christian Wohlschlager (Tue Aug 18 2009 - 01:06:27 CDT)
  • John Stone (Wed Aug 12 2009 - 07:55:30 CDT)
  • Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
• CUDA-NAMD hangs -- check the Northbridge temp!
  • Biff Forbush (Tue Jan 05 2010 - 21:51:51 CST)
• Curious about analytical capabilities of VMD
  • Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
  • Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
  • Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
  • Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
  • Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
  • Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
  • Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
• cursor size/shape in pick mode
  • Mads Nørregaard-Madsen (Fri May 02 2003 - 12:04:45 CDT)
  • John Stone (Thu May 01 2003 - 08:30:57 CDT)
  • Mads Nørregaard-Madsen (Thu May 01 2003 - 03:43:32 CDT)
• custom color on surface plot
  • Axel Kohlmeyer (Thu Apr 10 2014 - 09:57:41 CDT)
  • Beat Meier (Thu Apr 10 2014 - 09:09:05 CDT)
• custom db in Multiseq
  • Elijah Roberts (Tue May 22 2007 - 16:01:53 CDT)
  • John Eargle (Fri May 18 2007 - 14:02:09 CDT)
  • Armen Nalian (Fri May 18 2007 - 12:29:41 CDT)
  • John Eargle (Fri May 18 2007 - 11:32:51 CDT)
  • Armen Nalian (Thu May 17 2007 - 18:48:01 CDT)
• Custom particle shapes
  • John Stone (Sun Mar 07 2021 - 14:55:31 CST)
  • Johannes Haataja (Sun Mar 07 2021 - 08:31:07 CST)
  • Gumbart, JC (Sat Mar 06 2021 - 17:02:07 CST)
  • Johannes Haataja (Sat Mar 06 2021 - 13:58:14 CST)
  • John Stone (Sat Mar 06 2021 - 12:46:29 CST)
  • Johannes Haataja (Sat Mar 06 2021 - 06:27:04 CST)
• Custom residue in mutate psfgen
  • Prof. Eddie (Tue Mar 02 2021 - 07:56:53 CST)
  • Michael Robinson (Tue Mar 02 2021 - 05:53:35 CST)
  • Prof. Eddie (Mon Mar 01 2021 - 14:10:15 CST)
• custom residue ribbon/cartoon representation issue
  • Do Yong Kim (Tue Oct 01 2013 - 10:59:08 CDT)
• Custom selection variable
  • Josh (Fri Aug 11 2023 - 08:32:12 CDT)
  • Bart Bruininks (Tue Aug 08 2023 - 09:12:23 CDT)
• Custom Visualization of Atom Properties Change with Color
  • Nima Nouri (Sun Mar 16 2014 - 16:59:58 CDT)
• Custom VMD script development service for fee
  • Andrew Dalke (Fri Jun 08 2018 - 06:57:14 CDT)
  • Neeraj (Thu Jun 07 2018 - 15:08:32 CDT)
• Custom Water Box
  • Vermaas, Joshua (Fri Aug 12 2016 - 13:43:10 CDT)
  • Vermaas, Joshua (Wed Jul 27 2016 - 15:08:29 CDT)
  • Richard Wood (Wed Jul 27 2016 - 14:17:39 CDT)
  • Amy Rice (Wed Jul 27 2016 - 12:46:51 CDT)
  • Jackson Cavett (Tue Jul 26 2016 - 19:13:32 CDT)
  • James Kress (Mon Jul 25 2016 - 22:00:08 CDT)
  • Jackson Cavett (Mon Jul 25 2016 - 20:34:31 CDT)
• Customized radii
  • Axel Kohlmeyer (Tue May 22 2007 - 12:56:58 CDT)
  • Manali Joshi (Tue May 22 2007 - 13:04:27 CDT)
• Customizing vdw radius
  • John Stone (Tue Feb 17 2004 - 10:32:22 CST)
  • Marcin Krol (Tue Feb 17 2004 - 03:57:21 CST)
• Customizing VMD Sessions
  • John Stone (Thu Apr 14 2005 - 09:46:01 CDT)
  • Axel Kohlmeyer (Thu Apr 14 2005 - 08:45:00 CDT)
  • Adrian Koh (Thu Apr 14 2005 - 06:03:41 CDT)
  • Olaf Lenz (Thu Apr 14 2005 - 05:39:22 CDT)
  • Axel Kohlmeyer (Thu Apr 14 2005 - 05:39:38 CDT)
  • Adrian Koh (Thu Apr 14 2005 - 02:49:19 CDT)
• Cutting a bond
  • Axel Kohlmeyer (Wed May 19 2010 - 14:33:01 CDT)
  • Francesco Pietra (Wed May 19 2010 - 13:52:18 CDT)
• Cutting a sphere with a specified radius along a trajectory
  • Axel Kohlmeyer (Fri Jan 27 2012 - 17:24:23 CST)
  • John Stone (Fri Jan 27 2012 - 17:17:43 CST)
  • Mustafa Tekpinar (Fri Jan 27 2012 - 16:26:29 CST)
• Cutting and replacing in VMD
  • Kalyan Madanapalli (Sat Jun 03 2017 - 16:26:45 CDT)
• cutting short a DMPC bilayer in VMD
  • Jerome Henin (Sat Oct 07 2006 - 11:33:03 CDT)
  • Akshay Patny (Thu Oct 05 2006 - 21:23:43 CDT)
• cvs
  • Christian Wohlschlager (Tue Jul 14 2015 - 01:02:05 CDT)
  • John Stone (Mon Jul 13 2015 - 09:43:24 CDT)
  • Axel Kohlmeyer (Mon Jul 13 2015 - 03:06:18 CDT)
  • Christian Wohlschlager (Mon Jul 13 2015 - 02:08:53 CDT)
• CVS access is back online...
  • John Stone (Fri Aug 06 2004 - 16:08:41 CDT)
  • Jerry Ebalunode (Fri Aug 06 2004 - 06:53:15 CDT)
  • John Stone (Fri Aug 06 2004 - 10:12:15 CDT)
• cvs plugins do not compile because of errors in the sgsmooth.C
  • Cojocaru,Vlad (Tue Mar 31 2009 - 13:40:47 CDT)
  • John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
• CVS root directory not found
  • Jerry Ebalunode (Mon Aug 02 2004 - 10:57:47 CDT)
  • John Stone (Mon Aug 02 2004 - 16:10:27 CDT)
• Cyclic peptide Nanotube
  • Nikhil Maroli (Fri Oct 02 2015 - 08:52:59 CDT)
• Cyclic peptide nanotube psf second mail
  • Tristan Croll (Tue Oct 13 2015 - 02:00:43 CDT)
  • Nikhil Maroli (Tue Oct 13 2015 - 00:42:55 CDT)
• cyclic peptides
  • Alisha \ (Fri Jul 22 2011 - 13:09:55 CDT)
• Cycling between files using the same output file
  • Windle,Stephen (Sun Dec 17 2017 - 13:21:09 CST)
  • Vermaas, Joshua (Fri Dec 15 2017 - 20:03:57 CST)
  • Ashar Malik (Fri Dec 15 2017 - 17:34:44 CST)
  • Windle,Stephen (Fri Dec 15 2017 - 16:39:25 CST)
• cylindrical water
  • Rukman Hertadi (Fri Jan 24 2003 - 04:22:28 CST)
• Cylindrical water box
  • Liu, Zhanwu (Fri Jan 03 2003 - 08:49:53 CST)
• Dangerous bug with pbwithin selection?
  • Norman Geist (Fri Jun 26 2020 - 06:24:02 CDT)
• Dangling Bonds
  • John Stone (Fri Apr 03 2020 - 10:58:36 CDT)
  • Anthony Ruth (Fri Apr 03 2020 - 10:29:06 CDT)
  • Josh Vermaas (Thu Apr 02 2020 - 15:55:08 CDT)
  • Anthony Ruth (Thu Apr 02 2020 - 14:46:33 CDT)
• data analysis script help
  • Axel Kohlmeyer (Tue Sep 17 2013 - 08:18:57 CDT)
  • Martin, Erik W (Mon Sep 16 2013 - 11:51:15 CDT)
• Data fields in vmd
  • Axel Kohlmeyer (Thu Jan 15 2009 - 14:10:26 CST)
  • Cesar Luis Avila (Thu Jan 15 2009 - 13:27:14 CST)
  • Cesar Luis Avila (Thu Jan 15 2009 - 12:33:09 CST)
  • John Stone (Thu Jan 15 2009 - 11:38:22 CST)
  • John Stone (Thu Jan 15 2009 - 10:34:56 CST)
  • Axel Kohlmeyer (Wed Jan 14 2009 - 14:56:10 CST)
  • Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
• data file extensions
  • John Stone (Wed May 24 2006 - 13:04:16 CDT)
  • Kurt Smith (Wed May 24 2006 - 11:41:21 CDT)
• DCD architecture dependence
  • Jason Gans (Mon Dec 08 1997 - 08:58:10 CST)
• DCD Based on a parameter
  • Axel Kohlmeyer (Thu Aug 26 2010 - 11:11:07 CDT)
  • Ajasja LjubetiÄ� (Thu Aug 26 2010 - 10:12:42 CDT)
  • Pat Yee (Thu Aug 26 2010 - 09:01:51 CDT)
• DCD command-line options
  • John Stone (Wed Jun 28 2000 - 11:05:34 CDT)
  • Timm Essigke (Tue Jun 27 2000 - 11:55:16 CDT)
• DCD file
  • Yinglong Miao (Fri Mar 07 2008 - 14:43:37 CST)
  • Alejandro Ortega (Fri Mar 07 2008 - 12:07:23 CST)
• dcd File and bounds
  • Axel Kohlmeyer (Mon Sep 19 2016 - 09:47:15 CDT)
  • Christian Wohlschlager (Mon Sep 19 2016 - 08:00:53 CDT)
• dcd file appears to contain no timesteps
  • John Stone (Tue Jan 04 2005 - 10:18:52 CST)
  • mashaojie163 (Tue Jan 04 2005 - 02:58:38 CST)
• dcd file error
  • John Stone (Wed Aug 29 2007 - 00:08:39 CDT)
  • dimka (Tue Aug 28 2007 - 17:50:52 CDT)
• DCD file format
  • Tatyana Kuznetsova (Fri Sep 16 2005 - 05:58:44 CDT)
  • John Stone (Thu Sep 15 2005 - 11:07:50 CDT)
  • Chang, Christopher (Wed Sep 14 2005 - 14:27:47 CDT)
  • Tatyana Kuznetsova (Wed Sep 14 2005 - 09:09:06 CDT)
• DCD file format?
  • John Stone (Fri Apr 25 2003 - 17:40:04 CDT)
  • John Stone (Fri Apr 25 2003 - 16:02:00 CDT)
  • Changbong Hyeon (Fri Apr 25 2003 - 15:50:23 CDT)
• dcd files generated with catdcd
  • Giovanni (Fri Apr 30 2004 - 04:11:00 CDT)
• DCD for windows
  • John Stone (Mon Mar 12 2007 - 01:15:22 CDT)
  • John Stone (Tue Mar 06 2007 - 16:20:27 CST)
  • lily jin (Tue Mar 06 2007 - 15:25:40 CST)
• dcd format
  • Axel Kohlmeyer (Wed Oct 22 2008 - 15:59:08 CDT)
  • Leandro Martínez (Wed Oct 22 2008 - 14:41:32 CDT)
  • Axel Kohlmeyer (Wed Oct 22 2008 - 14:17:22 CDT)
  • Leandro Martínez (Wed Oct 22 2008 - 13:53:20 CDT)
  • Axel Kohlmeyer (Wed Oct 22 2008 - 12:49:56 CDT)
  • Tibbitt, Jeffrey A. (Wed Oct 22 2008 - 11:56:30 CDT)
  • JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
• dcd header information missing
  • Nichols A. Romero (Sat Mar 31 2007 - 18:11:30 CDT)
  • John Stone (Thu Mar 29 2007 - 11:03:17 CDT)
  • Nichols A. Romero (Thu Mar 29 2007 - 10:21:31 CDT)
• DCD is not detected as protein but single pdbs are?
  • Michael LeVine (Wed Jan 15 2014 - 19:45:48 CST)
• dcd large files, charmm-VMD
  • Kos (Wed May 04 2005 - 11:14:22 CDT)
  • Kos (Tue Apr 26 2005 - 14:31:51 CDT)
  • Axel Kohlmeyer (Fri Apr 22 2005 - 11:53:25 CDT)
  • John Stone (Fri Apr 22 2005 - 11:11:45 CDT)
  • Bogdan Costescu (Fri Apr 22 2005 - 11:08:13 CDT)
  • John Stone (Fri Apr 22 2005 - 11:06:09 CDT)
  • Kos (Fri Apr 22 2005 - 11:00:38 CDT)
  • Marc Q. Ma (Fri Apr 22 2005 - 10:44:25 CDT)
  • Kos (Fri Apr 22 2005 - 10:43:11 CDT)
  • John Stone (Fri Apr 22 2005 - 10:34:41 CDT)
  • John Stone (Fri Apr 22 2005 - 10:33:21 CDT)
  • John Stone (Fri Apr 22 2005 - 10:21:17 CDT)
  • Marc Q. Ma (Fri Apr 22 2005 - 09:15:17 CDT)
  • Bogdan Costescu (Fri Apr 22 2005 - 08:09:11 CDT)
  • Kos (Thu Apr 21 2005 - 20:29:21 CDT)
• DCD Question
  • McGuire, Kelly (Sun Apr 29 2018 - 20:31:18 CDT)
  • Fernando Vallejos-Burgos (Sun Apr 29 2018 - 18:37:16 CDT)
  • McGuire, Kelly (Sun Apr 29 2018 - 16:45:35 CDT)
• dcd reading error
  • John Stone (Sat Jan 03 2004 - 21:35:03 CST)
  • Bogdan Costescu (Sat Jan 03 2004 - 10:07:49 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 13:48:06 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 13:58:44 CST)
  • John Stone (Fri Jan 02 2004 - 14:34:07 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 14:27:06 CST)
  • John Stone (Fri Jan 02 2004 - 13:05:17 CST)
  • Mauricio C. Tripp (Fri Jan 02 2004 - 11:23:08 CST)
• dcd reading routines
  • John Stone (Fri Aug 10 2007 - 13:15:37 CDT)
  • nmichaud_at_jhu.edu (Fri Aug 10 2007 - 13:12:15 CDT)
• dcd to coor files
  • John Stone (Sat May 15 2004 - 14:08:20 CDT)
  • Amit Paliwal (Fri May 14 2004 - 15:18:26 CDT)
• DCD to XYZ conversion)
  • John Stone (Mon Oct 10 2005 - 14:53:09 CDT)
  • Kaihsu Tai (Thu Oct 06 2005 - 05:43:14 CDT)
• dcd tools
  • Chang, Christopher (Tue Sep 13 2005 - 10:20:35 CDT)
  • JC Gumbart (Mon Sep 12 2005 - 21:11:58 CDT)
  • dimka (Mon Sep 12 2005 - 20:34:20 CDT)
• DCD unit cell data
  • Axel Kohlmeyer (Thu Oct 16 2003 - 04:59:29 CDT)
  • Ioana Cozmuta (Wed Oct 15 2003 - 16:40:18 CDT)
  • Erica Smith (Wed Oct 15 2003 - 15:45:51 CDT)
• dcd with fixed atoms
  • John Stone (Thu Mar 18 2004 - 19:31:16 CST)
  • Bogdan Costescu (Wed Mar 17 2004 - 13:05:14 CST)
  • John Stone (Wed Mar 17 2004 - 10:13:00 CST)
  • Luis Gracia (Wed Mar 17 2004 - 00:39:28 CST)
• DCD write/save with a python script
  • David Huggins (Fri Nov 05 2010 - 14:58:18 CDT)
• dealing with large pdb files
  • Morteza Chehel Amirani (Tue Sep 27 2022 - 15:50:47 CDT)
• Dealing with lone pairs in fftk
  • Emma Wu (Sat Jan 30 2021 - 20:31:30 CST)
• debug
  • John Stone (Tue Jul 04 2006 - 22:43:57 CDT)
  • Vivek Sharma (Tue Jul 04 2006 - 01:07:20 CDT)
• debugging tool for atomselect
  • Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
• Decompose Transformation Matrix to Rotations and Translations along XYZ axes
  • Peter Mawanga (Fri Mar 30 2018 - 12:51:59 CDT)
  • Vermaas, Joshua (Fri Mar 23 2018 - 12:24:42 CDT)
  • Ashar Malik (Wed Mar 21 2018 - 13:29:17 CDT)
  • Peter Mawanga (Wed Mar 21 2018 - 11:12:20 CDT)
• Decrease in CC during MDFF
  • Ryan McGreevy (Fri Sep 20 2019 - 07:34:34 CDT)
  • Paula Mihaljevic-Juric (Fri Sep 20 2019 - 04:45:38 CDT)
• default colors
  • MyLinkka (Fri May 29 2009 - 05:15:26 CDT)
  • John Stone (Tue May 26 2009 - 17:03:39 CDT)
  • MyLinkka (Tue May 26 2009 - 04:57:50 CDT)
  • Axel Kohlmeyer (Mon May 25 2009 - 16:10:47 CDT)
  • John Stone (Wed May 20 2009 - 21:11:25 CDT)
  • MyLinkka (Wed May 20 2009 - 11:58:57 CDT)
  • Axel Kohlmeyer (Wed May 20 2009 - 09:38:40 CDT)
  • MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
• default directory
  • Michel Espinoza-Fonseca (Mon Dec 26 2005 - 10:25:01 CST)
  • Li Anbang (Mon Dec 26 2005 - 09:49:39 CST)
• default drawing style
  • Pawel Kedzierski (Fri Mar 18 2016 - 05:44:07 CDT)
  • Parvez Mh (Thu Mar 17 2016 - 18:02:06 CDT)
  • Ajasja LjubetiÄ� (Tue Mar 15 2016 - 08:59:58 CDT)
  • Parvez Mh (Tue Mar 15 2016 - 08:28:27 CDT)
  • Axel Kohlmeyer (Mon Mar 14 2016 - 22:04:59 CDT)
  • Parvez Mh (Mon Mar 14 2016 - 21:15:10 CDT)
  • Pawel Kedzierski (Fri Mar 11 2016 - 02:43:29 CST)
  • Parvez Mh (Fri Mar 11 2016 - 01:02:06 CST)
• Default parameters for image renderers
  • John Stone (Sat Jun 08 2002 - 22:24:24 CDT)
  • Reinhard Klement (Wed Jun 05 2002 - 04:20:15 CDT)
• Default radii and colors
  • John Stone (Fri Jul 16 2004 - 10:12:01 CDT)
  • Olaf Lenz (Fri Jul 16 2004 - 09:21:03 CDT)
• Default representation style in command line
  • Axel Kohlmeyer (Fri Apr 13 2012 - 07:21:39 CDT)
  • Nuno Sousa Cerqueira (Fri Apr 13 2012 - 07:08:18 CDT)
  • Paulo E. Abreu (Fri Apr 13 2012 - 06:10:43 CDT)
• default representations for multiple molecules
  • Bokas George (Thu May 15 2014 - 18:31:47 CDT)
  • Axel Kohlmeyer (Thu May 15 2014 - 18:06:53 CDT)
  • Bennion, Brian (Thu May 15 2014 - 17:48:54 CDT)
  • Josh Vermaas (Thu May 15 2014 - 17:49:51 CDT)
  • Bokas George (Thu May 15 2014 - 17:58:52 CDT)
  • Axel Kohlmeyer (Thu May 15 2014 - 17:30:12 CDT)
  • Bokas George (Thu May 15 2014 - 16:48:54 CDT)
• Default resource file (.vmdrc)
  • John Stone (Mon Sep 13 2004 - 15:59:23 CDT)
  • Gustavo Mercier (Mon Sep 13 2004 - 15:41:02 CDT)
• Default XML format
  • Axel Kohlmeyer (Fri Dec 07 2012 - 14:10:03 CST)
  • Tim Moore (Wed Dec 05 2012 - 09:55:15 CST)
• Define "color Element" through rgb values
  • Roger Nadler (Wed Mar 21 2012 - 12:20:50 CDT)
  • John Stone (Wed Mar 21 2012 - 11:34:24 CDT)
  • Axel Kohlmeyer (Mon Mar 19 2012 - 12:55:31 CDT)
  • Roger Nadler (Mon Mar 19 2012 - 11:47:14 CDT)
• Define bond length
  • John Stone (Mon Dec 16 2013 - 15:17:17 CST)
  • Axel Kohlmeyer (Mon Dec 16 2013 - 12:37:37 CST)
  • Lee, Sa (Mon Dec 16 2013 - 11:41:38 CST)
• define custom colours for posX gradient
  • Yogesh Sharma (Wed Aug 16 2023 - 06:30:49 CDT)
• Define the percentage of zoom
  • M K (Mon Feb 22 2016 - 17:54:14 CST)
  • John Stone (Mon Feb 22 2016 - 09:51:52 CST)
  • M K (Mon Feb 22 2016 - 05:21:36 CST)
• define water cavity using atom selection in graphical representations window
  • Axel Kohlmeyer (Tue Sep 06 2011 - 09:28:45 CDT)
  • Mark Cunningham (Tue Sep 06 2011 - 07:35:23 CDT)
  • Axel Kohlmeyer (Tue Sep 06 2011 - 05:11:00 CDT)
  • Axel Kohlmeyer (Tue Sep 06 2011 - 05:31:23 CDT)
  • Hitesh Patel (Tue Sep 06 2011 - 04:20:35 CDT)
  • Filip Persson (Tue Sep 06 2011 - 03:08:20 CDT)
• Defining a layer for a micelle
  • Vermaas, Joshua (Wed May 15 2019 - 12:12:22 CDT)
  • Nick Palmer (Wed May 15 2019 - 11:08:33 CDT)
  • Giacomo Fiorin (Wed May 15 2019 - 08:47:13 CDT)
  • Vermaas, Joshua (Wed May 15 2019 - 08:25:45 CDT)
  • Alec Zander (Wed May 15 2019 - 08:22:50 CDT)
  • Nick Palmer (Tue May 14 2019 - 21:33:36 CDT)
  • Vermaas, Joshua (Mon May 13 2019 - 13:35:32 CDT)
  • Alec Zander (Mon May 13 2019 - 12:12:42 CDT)
  • Nick Palmer (Mon May 13 2019 - 11:26:22 CDT)
• defining bonds
  • Axel Kohlmeyer (Thu Feb 21 2008 - 15:17:50 CST)
  • Thomas C. Bishop (Thu Feb 21 2008 - 14:47:15 CST)
• Defining Bonds in .xyz file format
  • Axel Kohlmeyer (Wed Feb 16 2005 - 06:09:46 CST)
  • Adrian Koh (Wed Feb 16 2005 - 02:29:09 CST)
• Defining graphics colors
  • John Stone (Mon Oct 25 2004 - 14:33:57 CDT)
  • John Stone (Thu Sep 30 2004 - 14:09:38 CDT)
  • hinsen_at_llb.saclay.cea.fr (Thu Sep 30 2004 - 03:34:26 CDT)
  • John Stone (Wed Sep 29 2004 - 16:12:24 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 16:02:31 CDT)
  • Luis Gracia (Wed Sep 29 2004 - 15:11:24 CDT)
  • John Stone (Wed Sep 29 2004 - 13:05:16 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 11:57:34 CDT)
  • John Stone (Wed Sep 29 2004 - 09:55:59 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 03:45:18 CDT)
  • John Stone (Tue Sep 28 2004 - 12:31:28 CDT)
  • hinsen_at_llb.saclay.cea.fr (Tue Sep 28 2004 - 12:15:05 CDT)
• Defining space coordinates for multiple structures
  • Joaquim Rui de Castro Rodrigues (Tue Dec 08 2015 - 14:17:13 CST)
  • Axel Kohlmeyer (Tue Dec 08 2015 - 13:45:12 CST)
  • Mariano Smoler (Tue Dec 08 2015 - 13:08:15 CST)
• defining/updating atom selection within loop
  • Chitrak Gupta (Fri May 27 2016 - 14:03:47 CDT)
  • Chitrak Gupta (Thu May 26 2016 - 15:31:33 CDT)
  • Josh Vermaas (Thu May 26 2016 - 15:35:18 CDT)
  • Chitrak Gupta (Thu May 26 2016 - 13:11:05 CDT)
  • Josh Vermaas (Thu May 26 2016 - 13:14:36 CDT)
  • Josh Vermaas (Thu May 26 2016 - 06:46:36 CDT)
  • John Stone (Wed May 25 2016 - 21:52:21 CDT)
  • Chitrak Gupta (Wed May 25 2016 - 22:05:21 CDT)
  • Chitrak Gupta (Wed May 25 2016 - 13:07:49 CDT)
• definition of single word "protein" selection
  • John Stone (Wed Feb 27 2013 - 10:28:52 CST)
  • John Stone (Wed Feb 27 2013 - 10:18:49 CST)
  • Bennion, Brian (Wed Feb 27 2013 - 10:22:55 CST)
  • Bennion, Brian (Tue Feb 26 2013 - 17:00:39 CST)
• defintion of alpha helix in vmd?
  • L. Michel Espinoza-Fonseca (Tue Dec 16 2008 - 04:41:47 CST)
  • Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
• delatom "no segment..."
  • Axel Kohlmeyer (Tue Jan 22 2008 - 05:49:32 CST)
  • Lucie Huynh (Tue Jan 22 2008 - 05:10:00 CST)
• delatom usage - no such segment?
  • Jim Phillips (Mon Dec 17 2007 - 11:50:12 CST)
  • Stephen M. Dutz (Sun Dec 09 2007 - 19:05:37 CST)
• delet a frame from dcd file
  • John Stone (Tue Feb 26 2013 - 16:47:17 CST)
  • yp sun (Sat Feb 02 2013 - 19:59:51 CST)
• delete angle type with topo tool
  • Axel Kohlmeyer (Sat May 09 2020 - 16:12:13 CDT)
  • omid gh (Sat May 09 2020 - 11:46:22 CDT)
• Delete atoms from selection
  • Axel Kohlmeyer (Mon Oct 19 2015 - 09:25:03 CDT)
  • Frank Zack (Mon Oct 19 2015 - 08:47:05 CDT)
  • Frank Zack (Mon Oct 19 2015 - 08:34:16 CDT)
• delete bad atom in psfgen
  • 程昌利 (Fri Nov 26 2010 - 05:21:01 CST)
• delete bonds in TIP3P
  • John Stone (Wed Jul 31 2002 - 08:12:28 CDT)
  • Pascal Bonnet (Wed Jul 31 2002 - 06:52:07 CDT)
• delete bonds in TIP3P water model
  • Pascal Bonnet (Sat Jul 27 2002 - 05:51:49 CDT)
• Delete frames in a script
  • Ran Friedman (Wed Jan 31 2007 - 03:33:36 CST)
  • Axel Kohlmeyer (Tue Jan 30 2007 - 11:13:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 11:02:41 CST)
  • L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 11:00:41 CST)
  • L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 10:38:22 CST)
  • Peter Freddolino (Tue Jan 30 2007 - 10:36:01 CST)
  • Ran Friedman (Tue Jan 30 2007 - 10:20:35 CST)
  • Ana Celia Araujo Vila Verde (Tue Jan 30 2007 - 10:08:50 CST)
  • Ran Friedman (Tue Jan 30 2007 - 06:12:14 CST)
• delete of some molecules
  • Axel Kohlmeyer (Sat Dec 15 2012 - 01:10:25 CST)
  • mohammad agha (Fri Dec 14 2012 - 23:42:56 CST)
• Delete overlapping residues
  • Axel Kohlmeyer (Sat Nov 24 2007 - 17:30:22 CST)
  • Francesco Pietra (Sat Nov 24 2007 - 10:50:32 CST)
• Delete redundant bonds in water molecule
  • Axel Kohlmeyer (Wed Aug 12 2015 - 18:27:41 CDT)
  • Xiaohui She (Wed Aug 12 2015 - 14:25:05 CDT)
  • Xiaohui She (Wed Aug 12 2015 - 11:32:31 CDT)
• delete residues from trajectory
  • Schreiner Eduard (Sun Mar 01 2009 - 01:14:53 CST)
  • bo baker (Sat Feb 28 2009 - 23:06:17 CST)
  • bo baker (Sat Feb 28 2009 - 03:44:06 CST)
  • bo baker (Sat Feb 28 2009 - 03:46:20 CST)
• delete segments from dcd file
  • Axel Kohlmeyer (Tue Mar 19 2013 - 02:13:32 CDT)
  • yp sun (Tue Mar 19 2013 - 01:12:22 CDT)
• delete the most recent atomselect?
  • Axel Kohlmeyer (Thu Nov 29 2012 - 15:42:33 CST)
  • Fatemesadat Emami (Thu Nov 29 2012 - 14:21:23 CST)
• Delete the residue and reassign the residue numbers
  • Karteek Kumar (Wed Dec 07 2016 - 01:23:53 CST)
• Delete Volume Maps via Script
  • John Stone (Tue Mar 06 2007 - 14:47:07 CST)
  • Bob Johnson (Wed Feb 28 2007 - 18:36:43 CST)
• Delete water 5 Angstrom away of ligand
  • konda003 . (Fri Feb 17 2017 - 08:34:24 CST)
• delete water molecules
  • Joshua Adelman (Sat Dec 18 2010 - 09:07:59 CST)
  • siddesh southekal (Sat Dec 18 2010 - 08:14:25 CST)
  • Joshua Adelman (Fri Dec 17 2010 - 10:31:41 CST)
  • Ajasja LjubetiÄ� (Fri Dec 17 2010 - 08:29:52 CST)
  • siddesh southekal (Fri Dec 17 2010 - 07:18:17 CST)
• Deleting a given bond type by topo tool
  • Axel Kohlmeyer (Wed Jul 18 2018 - 08:27:37 CDT)
  • Amir Hossein Saeedi Dehaghani (Wed Jul 18 2018 - 07:15:40 CDT)
  • Amir Hossein Saeedi Dehaghani (Tue Jul 17 2018 - 02:58:20 CDT)
• deleting at vmd console
  • John Stone (Thu Feb 15 2007 - 22:39:08 CST)
  • Dallas B. Warren (Thu Feb 15 2007 - 22:23:01 CST)
• Deleting atomselect selections for proper memory management
  • pbrenne1_at_nd.edu (Wed Jan 12 2005 - 13:10:44 CST)
  • Justin Gullingsrud (Wed Jan 12 2005 - 11:08:15 CST)
  • John Stone (Wed Jan 12 2005 - 10:22:00 CST)
  • pbrenne1_at_nd.edu (Wed Jan 12 2005 - 08:56:43 CST)
• Deleting bonds based on length
  • Arneh Babakhani (Fri Jul 27 2007 - 07:58:41 CDT)
  • Olaf Lenz (Fri Jul 27 2007 - 01:28:09 CDT)
  • Arneh Babakhani (Thu Jul 26 2007 - 23:41:11 CDT)
• Deleting frames / molecules does not free up memory!
  • Axel Kohlmeyer (Tue Oct 14 2008 - 11:13:11 CDT)
  • Benjamin Bouvier (Tue Oct 14 2008 - 11:34:44 CDT)
  • Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
• Deleting portions of isosurfaces
  • jimkress_58_at_kressworks.org (Thu May 23 2024 - 18:30:11 CDT)
  • jimkress_58_at_kressworks.org (Sat May 18 2024 - 00:12:45 CDT)
• deleting specific residues or atoms
  • Axel Kohlmeyer (Tue Feb 03 2009 - 10:55:28 CST)
  • maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
• deleting trajectory paths
  • Axel Kohlmeyer (Wed Feb 12 2014 - 20:45:14 CST)
  • Research Jubilant (Wed Feb 12 2014 - 19:31:53 CST)
• Deleting/modifying specific molecule representations
  • John Stone (Fri Jun 18 2010 - 16:20:57 CDT)
  • Ajasja LjubetiÄ� (Wed Jun 02 2010 - 11:53:00 CDT)
  • Bob Johnson (Tue Jun 01 2010 - 11:23:58 CDT)
• Delightful repl1ca w4tches at Prest1ge Repl1cas
  • Kenton Webster (Tue Aug 28 2007 - 09:33:17 CDT)
• Delightsome Cart1er w4tches at Prest1ge Repl1cas
  • Carson Cope (Fri Aug 31 2007 - 13:58:34 CDT)
• Delphi binary phi map problem
  • John Stone (Tue Dec 06 2005 - 17:08:10 CST)
  • Mengjuei Hsieh (Mon Dec 05 2005 - 19:59:12 CST)
  • John Stone (Mon Dec 05 2005 - 16:22:46 CST)
  • Mengjuei Hsieh (Fri Dec 02 2005 - 18:11:30 CST)
  • John Stone (Thu Dec 01 2005 - 17:26:20 CST)
  • Mengjuei Hsieh (Thu Dec 01 2005 - 17:10:03 CST)
• dementi: VMD freezes KDE under Linux Redhat = nVidia problem
  • Raik Grunberg (Mon Nov 05 2001 - 15:04:19 CST)
• Densities for protein and ligand
  • John Stone (Fri Feb 06 2004 - 13:56:17 CST)
  • Jim Nettles (Wed Feb 04 2004 - 11:52:31 CST)
• density
  • Swarna Patra (Sun Apr 10 2005 - 20:25:43 CDT)
• Density distribution plots
  • Axel Kohlmeyer (Fri Oct 10 2008 - 16:26:20 CDT)
  • mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
  • Axel Kohlmeyer (Thu Oct 09 2008 - 14:14:57 CDT)
  • mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
• density of system
  • Axel Kohlmeyer (Sun Jul 21 2013 - 16:08:49 CDT)
  • chin chun (Sun Jul 21 2013 - 14:46:30 CDT)
• Density of water box in solvate 1.5 plugin ~ 0.9 g/cc
  • Jim Parker (Sat Dec 13 2014 - 15:02:17 CST)
  • Jim Parker (Fri Dec 05 2014 - 15:33:06 CST)
  • Richard Wood (Fri Dec 05 2014 - 08:58:47 CST)
  • Jim Parker (Fri Dec 05 2014 - 07:29:22 CST)
• density profile
  • John Stone (Tue Mar 16 2004 - 18:49:27 CST)
  • Justin Gullingsrud (Tue Mar 16 2004 - 16:36:08 CST)
  • Ekta Khurana (Tue Mar 16 2004 - 14:57:36 CST)
• Density Profile in VMD
  • Axel Kohlmeyer (Mon Sep 05 2011 - 08:39:31 CDT)
  • oguz gurbulak (Mon Sep 05 2011 - 02:37:37 CDT)
• density profile install
  • Kazem Sepehrinia (Fri Dec 26 2014 - 10:14:19 CST)
• Density profile of MICELLE .
  • Giacomo Fiorin (Fri Oct 08 2021 - 11:05:29 CDT)
  • sheikh sameer (Fri Oct 08 2021 - 09:55:58 CDT)
• Density profile tool plugin
  • Faezeh Pousaneh (Thu Jun 16 2016 - 02:12:50 CDT)
• Density Profile Tool: Is the selection updated as the frame is changed?
  • Axel Kohlmeyer (Wed May 27 2015 - 22:37:02 CDT)
  • Shane.OMahony (Tue May 26 2015 - 15:11:09 CDT)
• density profiles
  • Eduardo (Wed Apr 22 2009 - 22:17:42 CDT)
  • BIN ZHANG (Wed Apr 22 2009 - 12:25:59 CDT)
  • Raul Araya (Wed Apr 22 2009 - 11:24:31 CDT)
• Depicting hydrogen bonds between water and residues
  • Josh Vermaas (Tue Nov 12 2013 - 08:42:11 CST)
  • bharat gupta (Mon Nov 11 2013 - 20:24:59 CST)
• Depletion of few atoms
  • makkuva Ram vivek (Mon Aug 29 2011 - 22:16:16 CDT)
• deposition simulation from lammps
  • Axel Kohlmeyer (Thu Jul 26 2007 - 12:53:39 CDT)
  • Kathleen Barron (Thu Jul 26 2007 - 11:04:33 CDT)
• Depth Cueing and dispdev none
  • John Stone (Wed Aug 13 2008 - 09:56:44 CDT)
  • Oleg Stroganov (Tue Aug 12 2008 - 18:03:29 CDT)
  • John Stone (Mon Aug 11 2008 - 14:13:55 CDT)
  • Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
• Depth of field with movie maker
  • Kyle Mills (Mon Apr 04 2016 - 16:37:55 CDT)
  • John Stone (Thu Mar 31 2016 - 10:19:22 CDT)
  • Kyle Mills (Thu Mar 31 2016 - 07:27:50 CDT)
• Derivation of parameters for a ligand with a Cl atom with fftk
  • ABEL Stephane (Tue Aug 07 2018 - 05:17:10 CDT)
  • JC Gumbart (Mon Aug 06 2018 - 11:34:48 CDT)
  • ABEL Stephane (Mon Aug 06 2018 - 08:21:57 CDT)
• Deselecting the atoms
  • Rafael Bernardi (Fri Jan 29 2021 - 11:21:07 CST)
  • Smith, Harper E. (Fri Jan 29 2021 - 10:18:48 CST)
  • Yuvam Bhateja (Fri Jan 29 2021 - 10:11:33 CST)
• desmond plug-in error
  • Nuno Sousa Cerqueira (Mon Nov 30 2009 - 18:35:39 CST)
  • Justin Gullingsrud (Mon Nov 30 2009 - 16:35:13 CST)
  • John Stone (Thu Nov 26 2009 - 14:16:26 CST)
  • Nuno Sousa Cerqueira (Thu Nov 26 2009 - 11:53:58 CST)
• desmond plugin
  • John Stone (Wed Dec 09 2009 - 09:11:33 CST)
  • John Stone (Fri Dec 04 2009 - 17:28:31 CST)
  • Nuno Sousa Cerqueira (Fri Dec 04 2009 - 15:07:32 CST)
  • John Stone (Fri Dec 04 2009 - 13:54:38 CST)
  • John Stone (Fri Dec 04 2009 - 10:43:25 CST)
  • Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:43:02 CST)
  • Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:37:51 CST)
• Desmond Trajectory Alignment for Timeline Analysis
  • Pedley, Anthony M (Tue Jun 25 2013 - 09:15:33 CDT)
• Desmond trajectory conversion to dcd format
  • dimka (Wed Nov 26 2008 - 17:09:57 CST)
  • Dong Xu (Wed Nov 26 2008 - 17:15:25 CST)
  • John Stone (Wed Nov 26 2008 - 16:52:42 CST)
  • Dong Xu (Wed Nov 26 2008 - 16:24:57 CST)
• Desmond Trajectory Files on the fly in VMD
  • Axel Kohlmeyer (Tue Mar 13 2012 - 08:56:45 CDT)
  • Hitesh Patel (Tue Mar 13 2012 - 05:13:34 CDT)
• desmond trajectory plugin
  • John Stone (Wed May 04 2011 - 22:36:41 CDT)
  • Davide Provasi (Mon May 02 2011 - 10:40:30 CDT)
• destroyed molecule
  • Peter Freddolino (Sat Nov 21 2009 - 08:59:35 CST)
  • sarah k (Sat Nov 21 2009 - 06:57:32 CST)
• Details of .psf format
  • Paul T. Bauman (Fri Dec 08 2006 - 15:24:48 CST)
  • Peter Freddolino (Fri Dec 08 2006 - 15:19:26 CST)
  • Marcos Sotomayor (Fri Dec 08 2006 - 14:56:45 CST)
  • Paul T. Bauman (Fri Dec 08 2006 - 14:52:09 CST)
• Detecting Custom "h-bonds"
  • Josh Vermaas (Thu Apr 25 2013 - 19:07:30 CDT)
  • Salomon Turgman Cohen (Thu Apr 25 2013 - 19:02:36 CDT)
  • Salomon Turgman Cohen (Thu Apr 25 2013 - 19:12:09 CDT)
  • Salomon Turgman Cohen (Thu Apr 25 2013 - 17:15:20 CDT)
  • Josh Vermaas (Thu Apr 25 2013 - 17:53:44 CDT)
  • Josh Vermaas (Thu Apr 25 2013 - 17:39:51 CDT)
  • Salomon Turgman Cohen (Thu Apr 25 2013 - 17:49:44 CDT)
  • Josh Vermaas (Thu Apr 25 2013 - 14:51:15 CDT)
  • Salomon Turgman Cohen (Thu Apr 25 2013 - 13:13:57 CDT)
• Determining energies between two different molecules
  • Nick Palmer (Thu Aug 16 2018 - 10:58:05 CDT)
• Determining the Size of my Molecule
  • Marc Gordon (Sat Sep 15 2012 - 07:15:28 CDT)
• Determining the Size of my Molecule. .
  • Axel Kohlmeyer (Sun Sep 16 2012 - 17:10:21 CDT)
  • Marc Gordon (Sun Sep 16 2012 - 05:21:29 CDT)
  • Rajan Vatassery (Sat Sep 15 2012 - 16:43:08 CDT)
  • Martin, Erik W (Sat Sep 15 2012 - 10:29:06 CDT)
• determining vdw, elec, and others
  • Jan Saam (Thu Feb 17 2005 - 16:00:00 CST)
  • Axel Kohlmeyer (Thu Feb 17 2005 - 03:43:21 CST)
  • Brian Kidd (Wed Feb 16 2005 - 23:09:12 CST)
• developing plugins to vmd in python
  • Axel Kohlmeyer (Tue Jul 03 2007 - 09:25:33 CDT)
  • shourabh rawat (Tue Jul 03 2007 - 01:12:22 CDT)
• Diagnosing vmd startup problems
  • John Stone (Mon May 07 2018 - 15:46:32 CDT)
  • Goedde, Chris (Mon May 07 2018 - 16:03:45 CDT)
  • Goedde, Chris (Mon May 07 2018 - 15:44:18 CDT)
  • John Stone (Mon May 07 2018 - 14:47:22 CDT)
  • Goedde, Chris (Mon May 07 2018 - 11:29:36 CDT)
• Dialboxes
  • John Stone (Mon Jul 23 2001 - 10:00:55 CDT)
  • John Stone (Sun Jul 22 2001 - 23:58:19 CDT)
  • Craig Morton (Sun Jul 22 2001 - 21:36:49 CDT)
• dict command
  • John Stone (Thu Apr 06 2006 - 09:55:36 CDT)
  • andrea spitaleri (Thu Apr 06 2006 - 02:43:21 CDT)
  • John Stone (Wed Apr 05 2006 - 10:11:08 CDT)
  • andrea spitaleri (Wed Apr 05 2006 - 09:44:50 CDT)
• dielectric constant for ELEC energy in VMD namdenergy tool
  • Axel Kohlmeyer (Tue Apr 28 2015 - 16:34:47 CDT)
  • Subrata Paul (Tue Apr 28 2015 - 05:03:37 CDT)
• difference for solvating a protein in long box suing or not using Molecule Dimensions
  • Shulin Zhuang (Sun Nov 25 2007 - 16:43:40 CST)
• difference in angles and dihedral between psf files
  • Raul Araya (Thu Jun 14 2012 - 10:02:58 CDT)
• Difference in ParseFEP result with versions 1.9.2 and 2.1
  • Brian Radak (Tue Feb 19 2019 - 11:44:01 CST)
  • Jérôme Hénin (Tue Feb 19 2019 - 11:48:04 CST)
  • Amy Rice (Tue Feb 19 2019 - 10:34:03 CST)
  • Jérôme Hénin (Mon Feb 18 2019 - 16:44:16 CST)
  • Brian Radak (Mon Feb 18 2019 - 16:31:07 CST)
  • Amy Rice (Mon Feb 18 2019 - 15:16:00 CST)
• Different bond styles in VMD
  • Patzschke, Dr. Michael (Mon Sep 03 2018 - 03:37:35 CDT)
  • Patzschke, Dr. Michael (Fri Aug 31 2018 - 09:01:28 CDT)
• different colors
  • Luca UvA (Thu Feb 06 2003 - 05:04:21 CST)
  • John Stone (Tue Feb 04 2003 - 10:01:19 CST)
  • Luca UvA (Tue Feb 04 2003 - 04:50:40 CST)
• Different colors of a residue at different frames
  • Cruzeiro,Vinicius Wilian D (Sun Jul 01 2018 - 11:00:50 CDT)
  • Vermaas, Joshua (Fri Jun 29 2018 - 12:27:47 CDT)
  • Vermaas, Joshua (Thu Jun 28 2018 - 17:53:00 CDT)
  • Cruzeiro,Vinicius Wilian D (Thu Jun 28 2018 - 16:13:29 CDT)
• Different colouring of the same molecule.
  • John Stone (Thu Aug 28 2014 - 14:16:13 CDT)
  • Dawid das (Wed Aug 27 2014 - 13:37:20 CDT)
• different hydrogen bond results for the same system
  • Sadegh Faramarzi Ganjabad (Tue Jun 06 2017 - 14:42:33 CDT)
  • Sadegh Faramarzi Ganjabad (Mon Jun 05 2017 - 15:27:57 CDT)
• different number of atoms in different frames of a trajectory
  • John Stone (Mon Sep 04 2006 - 22:46:01 CDT)
  • Enzo Vitale (Mon Sep 04 2006 - 11:09:33 CDT)
• different number of atoms in each frame of the trajectory file
  • Axel Kohlmeyer (Fri Jul 29 2011 - 18:05:32 CDT)
  • Debasis Sengupta (Fri Jul 29 2011 - 16:58:34 CDT)
• Different number of atoms trajectory frames
  • John Stone (Thu Dec 11 2003 - 10:41:34 CST)
  • John Stone (Thu Dec 11 2003 - 10:12:35 CST)
  • Manuel Melle-Franco (Thu Dec 11 2003 - 05:14:04 CST)
• different numbers of frames even though...
  • Axel Kohlmeyer (Fri Mar 14 2008 - 13:05:03 CDT)
  • Christopher Stiles (Fri Mar 14 2008 - 10:59:50 CDT)
  • Axel Kohlmeyer (Fri Mar 14 2008 - 09:49:00 CDT)
  • Christopher Stiles (Fri Mar 14 2008 - 01:49:53 CDT)
• Different output of Saltbridge calculation between Saltbridge plugin and Timeline
  • Priyabrata Panigrahi (Sat Feb 23 2013 - 02:21:14 CST)
• Different results in using GUI or script Timelime
  • Roni Saiba (Mon Jun 13 2022 - 02:06:32 CDT)
  • Leonardo Palmieri (Fri Jun 10 2022 - 11:15:34 CDT)
• different RMSD number in VMD and charmm
  • Peter Freddolino (Sat Aug 15 2020 - 20:30:19 CDT)
  • Michael Morgan (Fri Aug 14 2020 - 17:31:09 CDT)
• differentiate between nitroso and oxime atomselections
  • Bennion, Brian (Thu Jun 18 2015 - 11:03:48 CDT)
  • Axel Kohlmeyer (Wed Jun 17 2015 - 19:34:09 CDT)
  • Bennion, Brian (Wed Jun 17 2015 - 18:55:27 CDT)
• differentiating solvent molecules......
  • JC Gumbart (Tue Oct 17 2006 - 12:59:21 CDT)
  • John Stone (Tue Oct 17 2006 - 12:57:41 CDT)
  • bertrand russell (Tue Oct 17 2006 - 12:44:28 CDT)
• differing particle numbers in each frame
  • Axel Kohlmeyer (Tue Apr 23 2013 - 05:58:58 CDT)
  • Olaf Lenz (Fri Feb 08 2013 - 10:01:15 CST)
  • Jeffrey Potoff (Fri Feb 08 2013 - 09:56:22 CST)
  • Axel Kohlmeyer (Fri Feb 08 2013 - 07:53:07 CST)
  • Gavin Melaugh (Fri Feb 08 2013 - 06:55:05 CST)
• difficulties referencing a variable within a namespace
  • Peter Freddolino (Mon Dec 22 2008 - 14:04:35 CST)
  • Thomas Evangelidis (Sun Dec 21 2008 - 21:00:38 CST)
• Difficulties using Crystal Eyes 3
  • Christian Simon (Mon Dec 06 2004 - 10:20:59 CST)
  • Jim Nettles (Thu Dec 02 2004 - 14:09:58 CST)
  • John Stone (Thu Dec 02 2004 - 12:54:23 CST)
  • John Stone (Thu Dec 02 2004 - 09:51:12 CST)
  • Christian Simon (Thu Dec 02 2004 - 09:00:05 CST)
• difficulties with starting vmd
  • root (Sat Nov 29 1997 - 07:38:28 CST)
• difficulties with starting vmd (fwd)
  • root (Mon Dec 01 1997 - 09:25:02 CST)
• Difficulty downloading databases for MultiSeq
  • John Stone (Mon Nov 02 2020 - 14:30:33 CST)
  • Julia Steckner (Mon Jul 13 2020 - 11:34:50 CDT)
• difficulty in installing VMD on linux.
  • John Stone (Fri Sep 19 2008 - 15:11:32 CDT)
  • Deepti Mishra (Fri Sep 19 2008 - 05:47:18 CDT)
• difficulty in viewing AMBER mdcrd files
  • Thomas C. Bishop (Wed Jul 25 2012 - 11:40:35 CDT)
  • Brian Radak (Wed Jul 25 2012 - 08:45:38 CDT)
  • John Stone (Tue Jul 24 2012 - 15:36:01 CDT)
  • Thomas C. Bishop (Tue Jul 24 2012 - 15:24:15 CDT)
  • Mahendra B Thapa (Tue Jul 24 2012 - 12:38:00 CDT)
  • Thomas C. Bishop (Sat Jul 07 2012 - 09:56:37 CDT)
  • John Stone (Mon Jul 02 2012 - 15:22:10 CDT)
  • Axel Kohlmeyer (Mon Jul 02 2012 - 12:56:46 CDT)
  • Mahendra B Thapa (Mon Jul 02 2012 - 11:56:43 CDT)
• diffusion coefficient
  • Ivan Degtyarenko (Fri Dec 08 2006 - 05:44:58 CST)
  • Nicolas Floquet (Fri Dec 08 2006 - 04:24:27 CST)
  • Nicolas Floquet (Fri Dec 08 2006 - 04:21:48 CST)
• Diffusion Coefficient calculation
  • Nakshatra Upadhyay (Wed Aug 09 2023 - 15:04:29 CDT)
  • Josh (Wed Aug 09 2023 - 13:49:47 CDT)
  • Nakshatra Upadhyay (Wed Aug 09 2023 - 11:25:19 CDT)
  • Vermaas, Joshua (Wed Apr 11 2018 - 11:07:32 CDT)
  • A. M.M (Wed Apr 11 2018 - 11:37:52 CDT)
  • A. M.M (Wed Apr 11 2018 - 11:37:01 CDT)
  • A. M.M (Wed Apr 11 2018 - 11:27:31 CDT)
  • Rabeta Yeasmin (Wed Apr 11 2018 - 10:52:54 CDT)
  • Jeams Anderson (Wed Apr 11 2018 - 08:14:59 CDT)
• diffusion coefficient from rmsd
  • Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
• diffusion coefficient plug-in in VMD
  • Ana Celia Vila Verde (Tue May 08 2012 - 11:17:41 CDT)
  • fariba taghavi (Tue May 08 2012 - 09:14:54 CDT)
  • Axel Kohlmeyer (Tue May 08 2012 - 08:12:35 CDT)
  • fariba taghavi (Tue May 08 2012 - 07:06:31 CDT)
• diffusion coefficient tool
  • Roshan Shrestha (Wed May 16 2018 - 06:21:40 CDT)
  • Suresh Ghimire (Wed May 16 2018 - 02:32:55 CDT)
• Diffusion Constant
  • Axel Kohlmeyer (Wed Mar 19 2008 - 06:09:56 CDT)
  • Massimo Lai (Wed Mar 19 2008 - 06:09:44 CDT)
  • Axel Kohlmeyer (Tue Mar 18 2008 - 22:59:53 CDT)
  • joy tehrani (Wed Mar 12 2008 - 17:44:52 CDT)
  • Myunggi Yi (Tue Dec 12 2006 - 19:22:23 CST)
  • Myunggi Yi (Tue Dec 12 2006 - 19:12:35 CST)
  • Myunggi Yi (Tue Dec 12 2006 - 17:26:22 CST)
• digest form
  • John Stone (Wed Mar 17 2004 - 10:06:24 CST)
  • Bogdan Costescu (Wed Mar 17 2004 - 05:10:43 CST)
  • John Stone (Tue Mar 16 2004 - 10:09:07 CST)
  • Dr. Daniel James White PhD (Tue Mar 16 2004 - 03:34:05 CST)
• DIHE in topology file
  • Peter Freddolino (Thu Sep 04 2008 - 07:51:51 CDT)
  • politr_at_huji.ac.il (Thu Sep 04 2008 - 02:31:52 CDT)
• dihedral & g(r)
  • John Stone (Wed Apr 13 2005 - 09:34:13 CDT)
  • Mgr. Lubos Vrbka (Wed Apr 13 2005 - 00:52:34 CDT)
  • Kos (Tue Apr 12 2005 - 15:16:55 CDT)
• Dihedral angle calculation!
  • Jan Saam (Wed Jun 04 2003 - 16:54:02 CDT)
  • Justin Gullingsrud (Wed Jun 04 2003 - 12:29:43 CDT)
  • Justin Gullingsrud (Wed Jun 04 2003 - 12:08:32 CDT)
  • Jan Saam (Wed Jun 04 2003 - 11:37:41 CDT)
  • John Stone (Wed Jun 04 2003 - 11:32:15 CDT)
  • Thomas Hedegaard Pedersen (Wed Jun 04 2003 - 10:58:36 CDT)
• Dihedral angle calculations for alanine dipeptide
  • Jindal Shah (Tue Sep 06 2005 - 12:36:42 CDT)
• dihedral angle distribution
  • Collins Nganou (Tue Aug 13 2013 - 08:36:47 CDT)
• dihedral angles
  • Stephane Spieser (Wed Apr 22 1998 - 09:09:34 CDT)
  • Eduard Schreiner (Tue Dec 06 2005 - 09:35:22 CST)
  • Michel Espinoza-Fonseca (Mon Dec 05 2005 - 17:28:28 CST)
  • Narender Singh Maan (Mon Dec 05 2005 - 16:04:20 CST)
• dihedral angles at the ends
  • Brian Bennion (Tue Oct 05 2004 - 11:44:53 CDT)
  • Meric Ayse Ovacik (Sat Oct 02 2004 - 06:42:20 CDT)
• dihedral angles cleaned up
  • Alexei Podtelezhnikov (Fri Aug 05 2005 - 17:47:13 CDT)
  • John Stone (Thu Aug 04 2005 - 11:08:08 CDT)
  • Alexei Podtelezhnikov (Thu Aug 04 2005 - 10:09:38 CDT)
• dihedral angles cleaned up!
  • Alexei Podtelezhnikov (Thu Aug 04 2005 - 11:19:31 CDT)
• dihedral angles for a lot of identical molecules
  • tatyana_at_fi.uib.no (Thu Jun 17 2004 - 04:32:29 CDT)
• dihedral angles of nonpolar hydrogen in FFTK
  • Mayne, Christopher G (Tue Jun 20 2017 - 09:12:15 CDT)
  • Mayne, Christopher G (Mon Jun 19 2017 - 10:19:54 CDT)
  • saeed amini (Sun Jun 18 2017 - 07:37:51 CDT)
• dihedral energy using namdenergy -regd
  • Rajitha Tatikonda (Wed Nov 07 2012 - 06:52:20 CST)
• Dihedral fiiting - MME - optimum fit
  • Mohan maruthi sena (Wed Jul 01 2015 - 12:39:31 CDT)
• Dihedral fitting -FFTK-shift in minima
  • Mayne, Christopher G (Wed Sep 28 2016 - 09:35:46 CDT)
• Dihedrale angles in VMD
  • Axel Kohlmeyer (Thu Jul 03 2008 - 12:24:16 CDT)
  • Jorgen Simonsen (Thu Jul 03 2008 - 07:43:07 CDT)
• Dihedrals
  • Axel Kohlmeyer (Wed Jun 05 2013 - 10:42:43 CDT)
  • Ali Alizadeh (Wed Jun 05 2013 - 10:22:45 CDT)
  • Axel Kohlmeyer (Wed Jun 05 2013 - 09:37:22 CDT)
  • Ali Alizadeh (Wed Jun 05 2013 - 09:28:19 CDT)
  • Axel Kohlmeyer (Wed Jun 05 2013 - 09:03:00 CDT)
  • Ali Alizadeh (Wed Jun 05 2013 - 07:48:14 CDT)
• Dihedrals Angle
  • Ajasja LjubetiÄ� (Thu Jul 29 2010 - 02:13:30 CDT)
  • ban arn (Wed Jul 28 2010 - 11:43:47 CDT)
• dihedrals in ffTK
  • Mayne, Christopher G (Thu Jul 04 2013 - 13:17:54 CDT)
  • Darre Castell, Leonardo (Thu Jul 04 2013 - 06:56:16 CDT)
• diplaying multiple frames from DCD file
  • diane lynch (Fri Aug 24 2001 - 15:11:20 CDT)
• dipole
  • Axel Kohlmeyer (Wed Mar 19 2008 - 07:32:17 CDT)
  • Alessio Alexiadis (Wed Mar 19 2008 - 06:54:21 CDT)
• dipole / move (align)
  • Stéphane Pezennec (Fri Feb 11 2011 - 08:25:43 CST)
• dipole moment
  • Jan Saam (Fri Sep 08 2006 - 12:17:26 CDT)
  • Axel Kohlmeyer (Fri Sep 08 2006 - 12:13:29 CDT)
  • Axel Kohlmeyer (Fri Sep 08 2006 - 12:10:54 CDT)
  • L. Michel Espinoza-Fonseca (Fri Sep 08 2006 - 11:46:59 CDT)
• dipole moment - corrigendum!
  • Jan Saam (Fri Sep 08 2006 - 12:18:15 CDT)
• Dipole Moment calculation
  • Shounak Mukherjee (Tue Dec 08 2020 - 13:13:29 CST)
  • John Stone (Thu Dec 03 2020 - 01:25:14 CST)
  • Shounak Mukherjee (Wed Dec 02 2020 - 04:16:34 CST)
• Dipole Moment Measurement
  • John Stone (Thu Dec 17 2020 - 09:37:00 CST)
  • John Stone (Thu Dec 17 2020 - 00:44:32 CST)
  • Hamish Swanson (Wed Dec 16 2020 - 08:04:59 CST)
• Dipole Moment Monitoring
  • Axel Kohlmeyer (Mon Jun 06 2011 - 21:45:08 CDT)
  • Sally Fisher (Mon Jun 06 2011 - 21:10:57 CDT)
• Dipole moment?
  • Ignacio Fernández Galván (Tue Jul 15 2008 - 09:52:07 CDT)
  • Axel Kohlmeyer (Sat Jun 07 2008 - 12:47:19 CDT)
  • Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 13:25:40 CDT)
  • Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 07:21:55 CDT)
• dipole watcher plugin
  • kazimieras tamoliunas (Thu Aug 05 2021 - 04:51:56 CDT)
• Dipole Watcher Plugin - atom selection not updated at every frame when drawing dipoles
  • Axel Kohlmeyer (Mon Oct 22 2018 - 10:15:14 CDT)
  • Eric Lang (Thu Oct 18 2018 - 08:39:14 CDT)
  • Axel Kohlmeyer (Thu Oct 18 2018 - 08:05:04 CDT)
  • Eric Lang (Thu Oct 18 2018 - 06:31:41 CDT)
• Direct manipulation of the camera
  • poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 03:26:59 CDT)
  • poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 00:21:57 CDT)
• Disable autobonds for LAMMPS trajectory file
  • John Michael Alex Grime (Mon Apr 08 2013 - 17:26:12 CDT)
• Disable display resetview
  • Ahmet Bakan (Thu Apr 04 2013 - 08:38:56 CDT)
  • Axel Kohlmeyer (Thu Apr 04 2013 - 02:17:46 CDT)
  • John Stone (Wed Apr 03 2013 - 15:52:20 CDT)
  • Crosskey, Mark William (Sun Mar 31 2013 - 22:38:11 CDT)
• Disable OSPRay for VMD on AMD CPU
  • John Stone (Mon Apr 17 2017 - 07:59:29 CDT)
• Disable the set output
  • Leonardo Trabuco (Sat Jul 25 2009 - 10:54:53 CDT)
  • Thomas C. Bishop (Thu Jul 23 2009 - 09:52:15 CDT)
  • Nicolas Sapay (Thu Jul 23 2009 - 09:28:13 CDT)
  • Axel Kohlmeyer (Thu Jul 23 2009 - 07:45:34 CDT)
  • Nicolas SAPAY (Thu Jul 23 2009 - 05:15:24 CDT)
• Disabling VMD logo
  • Bryan Roessler (Tue May 31 2016 - 20:47:21 CDT)
  • Bryan Roessler (Tue May 31 2016 - 20:40:27 CDT)
• Discrepancy between colours when coloured by timestep and Tachyon rendered
  • John Stone (Thu Jun 19 2008 - 13:54:40 CDT)
  • Tim Carpenter (Thu Jun 19 2008 - 13:52:30 CDT)
  • John Stone (Thu Jun 19 2008 - 13:25:49 CDT)
  • John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
  • Tim Carpenter (Thu Jun 19 2008 - 12:48:40 CDT)
  • John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
• Discrepancy in interaction energy of amber coordinate trajectories of a system
  • Prathit Chatterjee (Fri Nov 20 2020 - 22:40:10 CST)
  • Peter Freddolino (Fri Nov 20 2020 - 11:47:47 CST)
  • Prathit Chatterjee (Fri Nov 20 2020 - 04:49:42 CST)
  • Prathit Chatterjee (Mon Nov 09 2020 - 01:14:26 CST)
  • Peter Freddolino (Mon Nov 09 2020 - 00:15:42 CST)
  • Prathit Chatterjee (Sun Nov 08 2020 - 21:55:55 CST)
  • Prathit Chatterjee (Sun Nov 08 2020 - 21:50:23 CST)
  • Peter Freddolino (Sat Nov 07 2020 - 19:35:23 CST)
  • Prathit Chatterjee (Sat Nov 07 2020 - 07:22:40 CST)
• Discrepancy in value of dihedral angles of a sugar molecule by VMD tools
  • chiessi_at_uniroma2.it (Fri Jul 23 2021 - 04:42:54 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Jul 22 2021 - 09:56:53 CDT)
  • Josh Vermaas (Thu Jul 22 2021 - 08:44:49 CDT)
  • chiessi_at_uniroma2.it (Thu Jul 22 2021 - 08:38:25 CDT)
  • Axel Kohlmeyer (Thu Jul 22 2021 - 07:41:39 CDT)
  • chiessi_at_uniroma2.it (Thu Jul 22 2021 - 05:55:17 CDT)
• discriminate aromatic ring face
  • Michel Espinoza-Fonseca (Mon Dec 05 2005 - 10:45:47 CST)
  • andrea spitaleri (Mon Dec 05 2005 - 09:54:38 CST)
• display all frames simultaneously
  • Peter Freddolino (Thu Apr 16 2009 - 22:32:26 CDT)
  • Axel Kohlmeyer (Thu Apr 16 2009 - 22:11:12 CDT)
  • Samuel Coulbourn Flores 花山 (Thu Apr 16 2009 - 21:35:59 CDT)
• Display alternative atom locations using vmd
  • John Stone (Thu Sep 29 2005 - 14:03:29 CDT)
  • Wang, Yangzhou (Thu Sep 29 2005 - 13:35:47 CDT)
• Display APBS on Solvent Accessible Surface
  • Ricardo O. S. Soares (Thu Jan 16 2014 - 07:55:14 CST)
  • John Stone (Tue Jan 14 2014 - 09:43:03 CST)
  • Ricardo O. S. Soares (Fri Jan 10 2014 - 08:42:05 CST)
  • Josh Vermaas (Thu Jan 09 2014 - 16:36:59 CST)
  • Ricardo O. S. Soares (Thu Jan 09 2014 - 15:12:41 CST)
  • John Stone (Thu Jan 09 2014 - 16:01:14 CST)
• Display bond between fragment and protein residue
  • Mackay Steffensen (Mon Jul 02 2007 - 12:24:47 CDT)
• Display bond breaking
  • Axel Kohlmeyer (Tue Mar 18 2008 - 22:25:27 CDT)
  • Stanley, Yemin Shi (Tue Mar 18 2008 - 22:17:50 CDT)
• display bonds
  • John Stone (Wed Dec 19 2007 - 14:02:49 CST)
  • Dongsheng Zhang (Fri Dec 14 2007 - 08:52:24 CST)
• Display both-signed portions of isosurface
  • jimkress_58_at_kressworks.org (Sun Jun 02 2024 - 23:19:29 CDT)
  • Vermaas, Josh (Sun Jun 02 2024 - 15:24:39 CDT)
  • jimkress_58_at_kressworks.org (Sun Jun 02 2024 - 01:02:52 CDT)
• Display CCP4 density map around selection only
  • Axel Kohlmeyer (Sun Aug 04 2013 - 23:11:02 CDT)
  • Ryan McGreevy (Sun Aug 04 2013 - 20:14:57 CDT)
  • Jim (Sun Aug 04 2013 - 18:51:08 CDT)
• display Gaussian cube file
  • Eduard Schreiner (Wed Jul 13 2005 - 04:05:27 CDT)
  • John Stone (Tue Jul 12 2005 - 13:05:46 CDT)
  • Jiabo Li (Tue Jul 12 2005 - 11:24:56 CDT)
• Display Grasp potential map in VMD
  • Wei Liu (Wed Jul 25 2007 - 16:15:14 CDT)
  • John Stone (Thu Jul 26 2007 - 16:16:27 CDT)
• display hexagonal periodic system
  • Justin Gullingsrud (Wed Aug 10 2005 - 19:21:02 CDT)
  • dimka (Wed Aug 10 2005 - 12:38:54 CDT)
• Display issue on VMD for Linux
  • John Stone (Thu Mar 12 2009 - 17:02:21 CDT)
  • Samuel Coulbourn Flores 花山 (Thu Mar 12 2009 - 16:54:11 CDT)
  • Axel Kohlmeyer (Wed Mar 04 2009 - 21:55:04 CST)
  • Samuel Coulbourn Flores 花山 (Wed Mar 04 2009 - 19:43:59 CST)
• Display Multiple Bond Order
  • John Stone (Wed Jun 29 2011 - 15:24:24 CDT)
  • Axel Kohlmeyer (Wed Jun 29 2011 - 12:41:50 CDT)
  • Joseph Bylund (Wed Jun 29 2011 - 11:57:50 CDT)
• Display not updated when using move() from Python in VMD 1.8.6
  • Axel Kohlmeyer (Thu May 07 2009 - 10:45:00 CDT)
  • John Stone (Thu May 07 2009 - 10:19:09 CDT)
  • Axel Kohlmeyer (Thu May 07 2009 - 09:44:06 CDT)
  • Pawel Kedzierski (Thu May 07 2009 - 07:31:25 CDT)
  • Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
  • Pawel Kedzierski (Wed May 06 2009 - 13:50:47 CDT)
• display of electron density maps
  • Axel Kohlmeyer (Thu Jun 03 2004 - 11:50:29 CDT)
  • Eamon Caddigan (Thu Jun 03 2004 - 11:33:00 CDT)
  • Karsten Suhre (Thu Jun 03 2004 - 07:53:20 CDT)
• Display of H-bonded waters only
  • pl (Wed Nov 03 2004 - 10:04:29 CST)
• display of periodic DCD information
  • John Stone (Thu Feb 14 2008 - 16:34:22 CST)
  • Olaf Lenz (Thu Feb 14 2008 - 16:05:32 CST)
  • Olaf Lenz (Thu Feb 14 2008 - 16:08:46 CST)
  • Thomas C. Bishop (Thu Feb 14 2008 - 14:15:15 CST)
• display of periodic DCD information/PBCTOOL
  • Axel Kohlmeyer (Fri Feb 15 2008 - 12:22:40 CST)
  • Thomas C. Bishop (Fri Feb 15 2008 - 11:44:24 CST)
• display of the atom number beyond 100000 in pdb file
  • John Stone (Wed Mar 03 2010 - 01:11:27 CST)
  • YangMingjun (Wed Mar 03 2010 - 00:52:07 CST)
  • Dipesh Bhattarai (Tue Mar 02 2010 - 21:41:53 CST)
  • YangMingjun (Tue Mar 02 2010 - 20:36:25 CST)
• Display on a Graphic Cluster
  • John Stone (Fri Jan 28 2005 - 17:37:08 CST)
  • Luis Rosales (Fri Jan 28 2005 - 17:54:15 CST)
  • John Stone (Fri Jan 28 2005 - 13:55:58 CST)
  • Luis Rosales (Fri Jan 28 2005 - 15:23:51 CST)
• Display only side chains
  • Justin Gullingsrud (Tue Mar 08 2005 - 10:33:32 CST)
  • Jérôme Hénin (Mon Mar 07 2005 - 18:59:42 CST)
  • Chang, Christopher (Mon Mar 07 2005 - 17:40:24 CST)
  • Peter Holm (Mon Mar 07 2005 - 17:04:25 CST)
  • John Stone (Mon Mar 07 2005 - 16:46:47 CST)
  • Luis Rosales (Mon Mar 07 2005 - 17:36:29 CST)
  • Peter Holm (Mon Mar 07 2005 - 16:21:02 CST)
  • Peter Holm (Mon Mar 07 2005 - 15:42:40 CST)
• display panel only showed 1/4 of its area on the screen.
  • Margaret Cheung (Mon Jan 21 2002 - 01:40:58 CST)
  • Jim Phillips (Sun Jan 20 2002 - 13:59:26 CST)
  • John Stone (Sun Jan 20 2002 - 13:25:32 CST)
  • Margaret Cheung (Sun Jan 20 2002 - 12:45:26 CST)
• Display point charges
  • jimkress_58_at_kressworks.org (Wed Aug 24 2022 - 13:55:01 CDT)
• Display problem
  • Stéphane (Tue Dec 04 2001 - 10:26:23 CST)
  • John Stone (Tue Dec 04 2001 - 09:44:20 CST)
  • Stéphane (Wed Nov 28 2001 - 05:52:41 CST)
• Display Problem with VMD in Mac OS
  • Q=96zer_Duman?= (Sat Jan 03 2015 - 10:32:29 CST)
• Display representations with Tk Console
  • Giacomo Fiorin (Thu Oct 11 2018 - 14:35:26 CDT)
  • Vermaas, Joshua (Thu Oct 11 2018 - 13:53:23 CDT)
  • Giacomo Fiorin (Thu Oct 11 2018 - 13:11:43 CDT)
  • Michail Lazaratos (Thu Oct 11 2018 - 12:19:13 CDT)
• display residues near ligand
  • amin sagar (Sat Aug 11 2018 - 03:14:12 CDT)
  • Graham Jackson (Sat Aug 11 2018 - 02:38:55 CDT)
• Display shuts down on startup
  • Peter Holm (Wed Jun 29 2005 - 02:37:37 CDT)
  • Stefano Piana (Tue Jun 28 2005 - 20:37:15 CDT)
  • John Stone (Tue Jun 28 2005 - 15:35:12 CDT)
  • Peter Holm (Tue Jun 28 2005 - 07:05:04 CDT)
  • John Stone (Mon Jun 27 2005 - 09:52:56 CDT)
  • QS=2E_Teletch=E9a=22?= (Mon Jun 27 2005 - 07:33:36 CDT)
  • Peter Holm (Mon Jun 27 2005 - 07:07:07 CDT)
  • QS=2E_Teletch=E9a=22?= (Mon Jun 27 2005 - 06:55:45 CDT)
  • Peter Holm (Mon Jun 27 2005 - 05:36:50 CDT)
• Display size in VMD 1.8a29 for OS X
  • John Stone (Tue Nov 05 2002 - 10:41:46 CST)
• display surface amino acid beads
  • John Stone (Tue Jan 12 2010 - 14:25:28 CST)
  • Christine Horejs (Sat Jan 09 2010 - 04:22:34 CST)
• Display the electrostatic character (delphimap) on the structure file
  • John Stone (Wed May 24 2006 - 13:37:50 CDT)
  • Eric Hajjar (Wed May 24 2006 - 02:48:31 CDT)
  • John Stone (Tue May 16 2006 - 13:14:20 CDT)
  • Eric Hajjar (Tue May 16 2006 - 01:51:14 CDT)
  • John Stone (Mon May 15 2006 - 12:29:27 CDT)
  • John Stone (Mon May 15 2006 - 12:15:11 CDT)
  • Eric Hajjar (Thu May 11 2006 - 01:18:54 CDT)
  • John Stone (Tue May 09 2006 - 09:25:09 CDT)
  • Eric Hajjar (Tue May 09 2006 - 05:18:37 CDT)
• display water
  • Josh Vermaas (Sun Aug 03 2014 - 07:25:55 CDT)
  • sunyeping (Sun Aug 03 2014 - 02:06:44 CDT)
• Displaying an overlay of multiple structures with VMD
  • John Stone (Thu Feb 10 2011 - 12:56:22 CST)
  • Axel Kohlmeyer (Tue Feb 08 2011 - 16:28:23 CST)
  • John Stone (Tue Feb 08 2011 - 14:22:21 CST)
  • B.M.B. Vanschouwen (Tue Feb 08 2011 - 09:19:45 CST)
• Displaying Bead and Bonds
  • Axel Kohlmeyer (Wed Jan 19 2011 - 14:30:29 CST)
  • Phelan Jr., Frederick R. Dr. (Wed Jan 19 2011 - 13:32:48 CST)
• Displaying biological unit revisited
  • John Stone (Tue Nov 07 2006 - 17:08:12 CST)
  • Adrian Kaats (Thu Nov 02 2006 - 14:23:41 CST)
  • John Stone (Wed Nov 01 2006 - 16:32:29 CST)
  • Adrian Kaats (Tue Oct 31 2006 - 12:22:19 CST)
• displaying charge distribution
  • Bjørnar Jensen (Mon Jan 14 2013 - 01:53:38 CST)
  • mpincu (Fri Jan 11 2013 - 15:28:51 CST)
• Displaying Colors
  • John Stone (Wed Nov 12 2014 - 10:45:38 CST)
  • John Stone (Mon Nov 10 2014 - 09:14:52 CST)
  • Kraemer, Tobias (Mon Nov 10 2014 - 07:04:58 CST)
• Displaying Counter alongside animation
  • Adrian Koh (Mon Feb 11 2008 - 03:08:44 CST)
  • Axel Kohlmeyer (Tue Feb 05 2008 - 03:23:44 CST)
  • Adrian Koh (Tue Feb 05 2008 - 00:20:36 CST)
• Displaying disulfide bonds with updated VMD
  • Francesco Pietra (Sun Aug 02 2020 - 01:16:00 CDT)
  • Josh Vermaas (Sat Aug 01 2020 - 16:48:19 CDT)
  • Francesco Pietra (Sat Aug 01 2020 - 12:04:20 CDT)
• displaying double, triple bonds
  • John Stone (Thu Aug 11 2005 - 15:41:31 CDT)
  • Andrew Dalke (Tue Mar 29 2005 - 17:05:33 CST)
  • Stern, Julie (Tue Mar 29 2005 - 14:56:57 CST)
• Displaying Flat Cross-Sections Using Surface Representation
  • John Stone (Thu Mar 28 2013 - 14:16:49 CDT)
  • Robert Johnson (Thu Mar 28 2013 - 12:35:10 CDT)
  • Robert Johnson (Thu Feb 28 2013 - 16:29:40 CST)
  • John Stone (Tue Feb 26 2013 - 13:06:47 CST)
  • Mayne, Christopher G (Tue Feb 26 2013 - 12:58:11 CST)
  • Robert Johnson (Tue Feb 26 2013 - 11:59:28 CST)
• Displaying gaussian cube file produced by Delphi
  • John Stone (Mon Apr 30 2018 - 22:06:29 CDT)
  • Andy Liu (Mon Apr 30 2018 - 17:04:24 CDT)
• displaying hydrogen bonds when hydrogens are not available
  • Eric H. Lee (Thu Jun 19 2008 - 09:46:51 CDT)
  • Axel Kohlmeyer (Thu Jun 19 2008 - 09:31:53 CDT)
  • Y. U. Sasidhar (Thu Jun 19 2008 - 07:34:23 CDT)
• Displaying local water molecules throughout trajectory
  • John Stone (Thu Feb 26 2009 - 14:53:56 CST)
  • Axel Kohlmeyer (Thu Feb 26 2009 - 15:20:50 CST)
  • ben rodriguez (Thu Feb 26 2009 - 14:47:26 CST)
• displaying many frames with periodic images
  • John Stone (Mon Feb 21 2005 - 11:30:01 CST)
  • Philip Blood (Mon Feb 21 2005 - 10:49:51 CST)
• Displaying nearest images using PBCTools
  • Olaf Lenz (Wed Apr 09 2008 - 03:06:08 CDT)
  • Subramanian Vaitheeswaran (Tue Apr 08 2008 - 15:49:03 CDT)
• displaying neighboring residues
  • John Stone (Wed Sep 22 2004 - 12:36:51 CDT)
  • Stern, Julie (Wed Sep 22 2004 - 11:54:26 CDT)
• Displaying protein AND ligand from an amber trajectory
  • George Tzotzos (Fri May 20 2011 - 09:16:14 CDT)
  • Ajasja LjubetiÄ� (Fri May 20 2011 - 09:11:24 CDT)
  • Axel Kohlmeyer (Fri May 20 2011 - 09:07:14 CDT)
  • George Tzotzos (Fri May 20 2011 - 08:31:17 CDT)
• Displaying residue name in simulation movie
  • Josh Vermaas (Mon Oct 13 2014 - 09:15:38 CDT)
  • James Lord (Sun Oct 12 2014 - 22:04:36 CDT)
• Displaying residues on chain A within X of chain B
  • Irene Newhouse (Sat Sep 10 2011 - 00:49:34 CDT)
  • Irene Newhouse (Sat Sep 10 2011 - 00:33:25 CDT)
  • Axel Kohlmeyer (Fri Sep 09 2011 - 20:27:25 CDT)
  • Mark Cunningham (Fri Sep 09 2011 - 20:40:36 CDT)
  • Irene Newhouse (Fri Sep 09 2011 - 19:54:51 CDT)
  • Axel Kohlmeyer (Fri Sep 09 2011 - 17:51:33 CDT)
  • Irene Newhouse (Fri Sep 09 2011 - 16:19:18 CDT)
• displaying residues within 5 A of ligand in vmd
  • John Stone (Tue Mar 03 2009 - 10:25:12 CST)
  • Falgun Shah (Tue Mar 03 2009 - 09:53:29 CST)
• Displaying simulations and rotations
  • Mauricio Carrillo Tripp (Wed Apr 06 2005 - 15:00:54 CDT)
  • John Stone (Wed Apr 06 2005 - 11:23:09 CDT)
  • Palmer, Teresa (Wed Apr 06 2005 - 11:03:11 CDT)
• Displaying the periodic box ...
  • Eduard Schreiner (Thu May 24 2007 - 12:39:40 CDT)
  • Alexandr Isayev (Thu May 24 2007 - 10:59:08 CDT)
  • Axel Kohlmeyer (Thu May 24 2007 - 09:19:44 CDT)
  • Stéphane Téletchéa (Thu May 24 2007 - 09:54:25 CDT)
• displaying tube/ribbon with varying diameter ?
  • John Stone (Tue May 18 2004 - 08:56:09 CDT)
  • Marc Baaden (Tue May 18 2004 - 05:26:26 CDT)
• displaying velocity from dlpoly history
  • Axel Kohlmeyer (Tue Jul 10 2007 - 15:07:16 CDT)
  • Peter Freddolino (Tue Jul 10 2007 - 15:22:13 CDT)
  • Stern, Julie (Tue Jul 10 2007 - 14:52:37 CDT)
• DisRG Plugin Availability
  • Axel Kohlmeyer (Thu Aug 25 2022 - 17:45:01 CDT)
  • Trifan, Anda (Thu Aug 25 2022 - 11:56:11 CDT)
  • Efthymiou, Christos (Thu Aug 25 2022 - 10:43:10 CDT)
• Distance between atoms in frame
  • snoze pa (Wed Jul 06 2011 - 09:53:32 CDT)
  • sajad falsafi (Wed Jul 06 2011 - 05:56:58 CDT)
  • Mark Cunningham (Tue Jul 05 2011 - 21:09:24 CDT)
  • Axel Kohlmeyer (Tue Jul 05 2011 - 20:10:04 CDT)
  • snoze pa (Tue Jul 05 2011 - 19:12:47 CDT)
  • snoze pa (Tue Jul 05 2011 - 18:12:31 CDT)
• Distance between center of mass of two amino acid residues.
  • Axel Kohlmeyer (Sun Feb 19 2012 - 14:43:17 CST)
  • Axel Kohlmeyer (Sun Feb 19 2012 - 11:37:25 CST)
  • mish (Sun Feb 19 2012 - 10:27:45 CST)
• Distance between COM for 2 chains for each frame of trajectory
  • Axel Kohlmeyer (Wed May 20 2009 - 14:05:27 CDT)
  • Axel Kohlmeyer (Wed May 20 2009 - 12:09:39 CDT)
  • Florentina Tofoleanu (Wed May 20 2009 - 11:34:18 CDT)
• Distance between multiple residues as heat plot
  • Raman Preet Singh (Fri Sep 11 2020 - 06:21:21 CDT)
• distance between two groups of atoms
  • Rabeta Yeasmin (Mon Dec 18 2017 - 10:02:23 CST)
  • Souvik Sinha (Sat Dec 16 2017 - 04:33:25 CST)
  • Karteek Kumar (Fri Dec 15 2017 - 15:23:39 CST)
  • Vermaas, Joshua (Fri Dec 15 2017 - 15:37:27 CST)
  • Rabeta Yeasmin (Fri Dec 15 2017 - 14:39:06 CST)
• Distance calculation in TkConsole
  • Giovanni Bellesia (Thu Feb 10 2005 - 08:00:15 CST)
  • Axel Kohlmeyer (Thu Feb 10 2005 - 07:44:33 CST)
  • Leyla Celik (Thu Feb 10 2005 - 04:33:43 CST)
• Distance constraints
  • satya kumar (Mon Jul 09 2012 - 15:35:44 CDT)
  • satya kumar (Mon Jul 09 2012 - 14:30:27 CDT)
  • John Stone (Mon Jul 09 2012 - 11:31:39 CDT)
  • satya kumar (Mon Jul 09 2012 - 10:16:58 CDT)
  • John Stone (Mon Jul 09 2012 - 10:08:34 CDT)
  • satya kumar (Mon Jul 09 2012 - 08:15:51 CDT)
  • Suresh (Fri Jul 06 2012 - 23:33:01 CDT)
  • Axel Kohlmeyer (Fri Jul 06 2012 - 23:05:45 CDT)
  • satya kumar (Fri Jul 06 2012 - 18:34:20 CDT)
• Distance from surface
  • Giacomo Fiorin (Mon Dec 06 2021 - 12:57:32 CST)
  • Raman Preet Singh (Mon Dec 06 2021 - 12:07:40 CST)
• Distance lines
  • Joseph Bylund (Thu Sep 09 2010 - 16:46:55 CDT)
  • Patargias, George (Thu Sep 09 2010 - 15:24:38 CDT)
• Distance measurement and PBC
  • Olaf Lenz (Sun May 25 2014 - 05:41:59 CDT)
  • Ozgun Kirker (Student) (Fri May 23 2014 - 21:30:17 CDT)
• Distance measurement via measure bond
  • John Stone (Mon Jun 04 2007 - 14:36:31 CDT)
  • Axel Kohlmeyer (Mon Jun 04 2007 - 10:26:18 CDT)
  • Philipp Schoen1 (Mon Jun 04 2007 - 10:32:02 CDT)
• distance of two center of mass
  • Axel Kohlmeyer (Mon Oct 05 2009 - 06:04:33 CDT)
  • Nicola Giacche' (Mon Oct 05 2009 - 04:36:37 CDT)
• distance selection
  • Josh Vermaas (Fri Mar 07 2014 - 14:19:02 CST)
  • Antonio Tilocca (Fri Mar 07 2014 - 10:41:43 CST)
• distance to solvent accessible surface
  • John Stone (Wed Jun 04 2003 - 16:23:06 CDT)
  • Greg Moore (Wed Jun 04 2003 - 15:29:42 CDT)
• distance tween two atoms
  • John Stone (Wed Mar 22 2006 - 16:55:45 CST)
  • lily jin (Tue Mar 21 2006 - 15:42:18 CST)
• Distance, angle
  • John Stone (Mon Mar 24 2003 - 10:27:52 CST)
  • chandran karunakaran (Sat Mar 22 2003 - 15:09:10 CST)
• distance-based selections applied to velDCD
  • Mike McCallum (Tue Jul 03 2018 - 15:25:42 CDT)
  • Mike McCallum (Sat Jun 30 2018 - 12:00:27 CDT)
  • Vermaas, Joshua (Fri Jun 29 2018 - 18:28:58 CDT)
  • Mike McCallum (Fri Jun 29 2018 - 16:01:56 CDT)
• distances
  • Axel Kohlmeyer (Tue Apr 11 2006 - 14:11:13 CDT)
  • Kenley Barrett (Tue Apr 11 2006 - 11:19:41 CDT)
• Distances from the command line VMD 1.9.2
  • Josh Vermaas (Tue Sep 01 2015 - 09:05:18 CDT)
  • debra ragland (Tue Sep 01 2015 - 07:49:25 CDT)
• distances on a isosurface plot
  • John Stone (Thu Jan 26 2006 - 14:21:37 CST)
  • Marco Neves (Wed Jan 25 2006 - 12:28:09 CST)
• Distances with respect to principal axis
  • Peter Mawanga (Mon Mar 21 2022 - 09:30:57 CDT)
• Distribute evenly n-molecules at m-angstroem from protein surface
  • Vermaas, Joshua (Sun Dec 04 2016 - 11:17:09 CST)
  • Axel Kohlmeyer (Sun Dec 04 2016 - 00:29:54 CST)
  • John Stone (Sat Dec 03 2016 - 23:38:11 CST)
  • Ebert Maximilian (Fri Dec 02 2016 - 21:55:50 CST)
• distribution analysis
  • Lubos Vrbka (Tue Dec 07 2004 - 02:23:05 CST)
  • John Stone (Wed Dec 01 2004 - 10:43:51 CST)
  • Lubos Vrbka (Wed Dec 01 2004 - 10:29:25 CST)
  • John Stone (Wed Dec 01 2004 - 10:02:22 CST)
  • Jerry Ebalunode (Wed Dec 01 2004 - 10:00:26 CST)
  • Lubos Vrbka (Wed Dec 01 2004 - 09:25:53 CST)
• Disulfide bonds
  • Pavan Ghatty (Mon Oct 19 2009 - 10:55:24 CDT)
  • Andres Morales N (Tue Oct 13 2009 - 01:02:30 CDT)
• disulfide bonds are not showimg in vmd
  • Vermaas, Joshua (Mon Jan 29 2018 - 13:06:34 CST)
  • Shahee Islam (Mon Jan 29 2018 - 02:34:29 CST)
  • Souvik Sinha (Mon Jan 29 2018 - 02:27:09 CST)
  • Shahee Islam (Mon Jan 29 2018 - 01:41:15 CST)
  • Shahee Islam (Mon Jan 29 2018 - 00:01:25 CST)
• Disulfude bonds
  • JC Gumbart (Tue Oct 13 2009 - 01:20:11 CDT)
  • JC Gumbart (Tue Oct 13 2009 - 01:08:13 CDT)
  • Andres Morales N (Tue Oct 13 2009 - 01:00:39 CDT)
  • Schreiner Eduard (Tue Oct 13 2009 - 01:12:23 CDT)
• disulphide bond
  • Peter Freddolino (Tue May 30 2006 - 13:38:20 CDT)
  • Naser, Md Abu (Tue May 30 2006 - 13:09:43 CDT)
• disulphide bond formation
  • Axel Kohlmeyer (Fri Jun 05 2009 - 10:45:12 CDT)
  • gurunath katagi (Fri Jun 05 2009 - 10:14:11 CDT)
• Divide by Zero Error , but can't find the zero!
  • Arneh Babakhani (Thu Jul 05 2007 - 20:03:45 CDT)
  • Axel Kohlmeyer (Thu Jul 05 2007 - 14:53:16 CDT)
  • Arneh Babakhani (Thu Jul 05 2007 - 14:57:03 CDT)
• Dividing the water in groups like WAT1; WAT2; WAT3
  • PAUL NEWMAN (Wed Jun 22 2011 - 20:41:32 CDT)
• DL_POLY output files
  • John Stone (Tue Jul 25 2006 - 15:59:58 CDT)
  • Viswanadham Sridhara (Tue Jul 25 2006 - 15:31:08 CDT)
• dll by c++ cannot be recognized by VMD tk console ?
  • John Stone (Mon Nov 02 2009 - 13:57:35 CST)
  • vmd_chcwaaa (Sun Nov 01 2009 - 01:32:42 CDT)
• DLP Stereo and VR toolkit integration with vmd
  • Simon Su (Wed Sep 16 2009 - 16:29:22 CDT)
  • Simon Su (Wed Sep 16 2009 - 16:04:25 CDT)
  • John Stone (Wed Sep 16 2009 - 16:10:38 CDT)
• DLPOLY HISTORY FILE in VMD
  • Utpal Sarkar (Tue Mar 18 2008 - 11:08:29 CDT)
  • Axel Kohlmeyer (Tue Mar 18 2008 - 11:23:31 CDT)
• dlpoly history files in vmd 1.8.4
  • Mgr. Lubos Vrbka (Fri May 05 2006 - 00:48:51 CDT)
  • John Stone (Thu May 04 2006 - 10:38:26 CDT)
  • John Stone (Thu May 04 2006 - 08:28:45 CDT)
  • Mgr. Lubos Vrbka (Thu May 04 2006 - 01:09:54 CDT)
  • John Stone (Wed May 03 2006 - 17:34:16 CDT)
  • Mgr. Lubos Vrbka (Wed May 03 2006 - 14:24:57 CDT)
  • John Stone (Wed May 03 2006 - 10:24:15 CDT)
  • Mgr. Lubos Vrbka (Wed May 03 2006 - 02:26:50 CDT)
• dmpc membrane
  • Swarna Patra (Mon Jul 04 2005 - 20:17:43 CDT)
• DNA .dcd file analysis
  • Karl Decker (Thu Jan 05 2017 - 14:46:29 CST)
  • brataraj ghosh (Thu Jan 05 2017 - 07:33:07 CST)
• DNA and low pH
  • Peter Freddolino (Wed Jan 31 2007 - 19:51:26 CST)
  • Gaurav Sharma (Wed Jan 31 2007 - 15:06:46 CST)
• DNA form
  • Taufik Al-Sarraj (Thu Feb 11 2010 - 12:42:19 CST)
• DNA hairpin
  • Chirag Vora (Sun Aug 21 2011 - 11:49:44 CDT)
  • Anna (Sat Aug 20 2011 - 04:30:52 CDT)
  • Shesh Nath (Sat Aug 20 2011 - 04:41:20 CDT)
  • Jernej Zidar (Sat Aug 20 2011 - 02:39:31 CDT)
  • Shesh Nath (Sat Aug 20 2011 - 01:19:04 CDT)
• DNA mutation
  • João Ribeiro KS (Mon Mar 21 2016 - 11:33:43 CDT)
  • Vlad Cojocaru (Sat Mar 19 2016 - 03:34:16 CDT)
  • Kalyanashis Jana (Sat Mar 19 2016 - 02:32:08 CDT)
• DNA on RMSD Trajectory Tool
  • Ashar Malik (Tue Apr 28 2020 - 04:57:54 CDT)
  • Seojin You (Tue Apr 28 2020 - 03:11:26 CDT)
• Do different version of NAMD would give different results?
  • Krishna Vkm (Mon Sep 07 2020 - 08:04:08 CDT)
  • Peter Freddolino (Mon Sep 07 2020 - 07:31:01 CDT)
  • Krishna Vkm (Mon Sep 07 2020 - 04:56:11 CDT)
  • Krishna Vkm (Mon Sep 07 2020 - 04:47:50 CDT)
  • Peter Freddolino (Sun Sep 06 2020 - 19:00:34 CDT)
  • Josh Vermaas (Sun Sep 06 2020 - 17:00:53 CDT)
  • Krishna Vkm (Sun Sep 06 2020 - 14:38:26 CDT)
• Do I need a "professional" graphics card?
  • John Stone (Sun Feb 09 2014 - 13:41:14 CST)
  • Charles McAnany (Sun Feb 09 2014 - 13:29:41 CST)
• do not compute/draw bonds?
  • John Stone (Fri Jun 24 2005 - 11:02:38 CDT)
  • Axel Kohlmeyer (Thu Jun 23 2005 - 12:26:44 CDT)
  • Ivan Degtyarenko (Thu Jun 23 2005 - 08:36:33 CDT)
• Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD?
  • jnsong (Tue May 17 2011 - 21:42:42 CDT)
  • jnsong (Tue May 17 2011 - 21:32:52 CDT)
  • John Stone (Tue May 17 2011 - 10:09:55 CDT)
  • Axel Kohlmeyer (Tue May 17 2011 - 09:44:26 CDT)
  • jnsong (Tue May 17 2011 - 08:54:54 CDT)
• Dobule and triple bonds
  • Peter Freddolino (Tue Jan 13 2009 - 09:30:56 CST)
  • Max (Tue Jan 13 2009 - 04:32:04 CST)
• dock
  • Axel Kohlmeyer (Tue Apr 23 2013 - 04:22:26 CDT)
  • LW (Tue Apr 23 2013 - 03:40:47 CDT)
• docking
  • John Stone (Wed Sep 29 2004 - 20:33:05 CDT)
  • Adam Kubach (Wed Sep 29 2004 - 20:20:38 CDT)
• docking in VMD
  • Han Choe (Tue Jan 20 2004 - 01:24:57 CST)
  • John Stone (Mon Jan 19 2004 - 07:54:36 CST)
  • Han Choe (Mon Jan 19 2004 - 06:03:48 CST)
• Docking protein-protein
  • vladanstefanovic_at_kg.ac.rs (Wed May 16 2012 - 16:08:22 CDT)
• Does CHARMM-GUI Drude-Prepper input generator work for MD simulation of carbon nanotubes?
  • Stefan Boresch (Tue Jul 27 2021 - 02:38:19 CDT)
  • Raman Preet Singh (Tue Jul 27 2021 - 02:03:23 CDT)
  • zeynab hosseini (Mon Jul 26 2021 - 14:08:52 CDT)
• Does command "animate delete all" free memory?
  • Fred (Rui FENG) (Thu Feb 26 2009 - 17:00:49 CST)
  • John Stone (Thu Feb 26 2009 - 16:48:58 CST)
  • Fred (Rui FENG) (Thu Feb 26 2009 - 15:57:56 CST)
  • Fred (Rui FENG) (Thu Feb 26 2009 - 15:00:53 CST)
  • John Stone (Thu Feb 26 2009 - 15:16:44 CST)
• Does Paratool support CgenFF?
  • JC Gumbart (Wed Sep 28 2011 - 09:39:23 CDT)
  • Alexandre Suman de Araujo (Wed Sep 28 2011 - 09:28:14 CDT)
  • Alexandre Suman de Araujo (Wed Sep 28 2011 - 08:39:04 CDT)
  • JC Gumbart (Thu Sep 15 2011 - 01:31:32 CDT)
  • John Stone (Wed Sep 14 2011 - 10:10:31 CDT)
  • Axel Kohlmeyer (Wed Sep 14 2011 - 09:37:26 CDT)
  • Alexandre Suman de Araujo (Wed Sep 14 2011 - 07:22:33 CDT)
• Does the VMD Linux 64-bit version perform better than the Windows 32-bit when visualizing large molecules?
  • John Stone (Tue Aug 05 2014 - 21:05:56 CDT)
  • Can Ali Tomruk (Tue Aug 05 2014 - 16:45:31 CDT)
• Does this work with VMD: Nvidia 3DVision Glasses + SyncMaster 2233RZ + GTX 580 + Win7?
  • John Stone (Sat Jul 09 2011 - 22:20:20 CDT)
  • Ajasja LjubetiÄ� (Sat Jul 09 2011 - 17:06:19 CDT)
• Does topo readlammpsdata automatically detect bonds?
  • Dhritiman Talukdar (Fri Jan 30 2015 - 03:21:48 CST)
  • Axel Kohlmeyer (Thu Jan 29 2015 - 20:31:31 CST)
  • M K (Thu Jan 29 2015 - 19:16:23 CST)
  • Dhritiman Talukdar (Sat Jan 24 2015 - 09:23:00 CST)
• Does VMD 1.8.6 support SMP under IRIX?
  • John Stone (Fri Sep 19 2014 - 23:54:59 CDT)
  • tyrrell t (Fri Jul 25 2014 - 22:25:46 CDT)
• does vmd allow change in volume
  • Axel Kohlmeyer (Thu Nov 18 2010 - 14:34:29 CST)
  • David Wedner (Thu Nov 18 2010 - 12:57:00 CST)
• Does VMD support cfg file format?
  • John Stone (Wed Oct 01 2008 - 12:57:19 CDT)
  • zhjjvmd (Wed Oct 01 2008 - 11:58:06 CDT)
  • zhjjvmd (Wed Oct 01 2008 - 12:00:33 CDT)
  • John Stone (Wed Oct 01 2008 - 11:03:05 CDT)
  • zhjjvmd (Wed Oct 01 2008 - 03:52:32 CDT)
• Does Vmd support GUI and rendering separate
  • John Stone (Thu Oct 27 2005 - 13:43:42 CDT)
  • Terry Jordan (Thu Oct 27 2005 - 09:26:10 CDT)
  • John Stone (Tue Oct 25 2005 - 15:09:00 CDT)
  • Terry Jordan (Tue Oct 25 2005 - 14:26:06 CDT)
• Does VMD support LES simulations?
  • John Stone (Fri Jan 30 2004 - 01:26:48 CST)
  • Vlad Cojocaru (Thu Jan 29 2004 - 11:17:28 CST)
• Does VMD support LES simulations?]
  • John Stone (Fri Jan 30 2004 - 13:10:34 CST)
• Does VMD support to draw a velocity field diagram?
  • Axel Kohlmeyer (Thu Mar 13 2008 - 18:03:54 CDT)
  • Fred (Rui FENG) (Thu Mar 13 2008 - 16:26:13 CDT)
• Does volume coloring require GLSL rendering?
  • John Stone (Tue Oct 03 2006 - 14:27:52 CDT)
  • Robin L Hayes (Mon Oct 02 2006 - 19:26:24 CDT)
• Domain error in parseFEP
  • Kevin Song (Tue Oct 23 2018 - 11:58:47 CDT)
• Domain Error while using ParseFEP plugin
  • John Stone (Tue Dec 10 2013 - 10:32:07 CST)
  • Shyno Mathew (Mon Dec 09 2013 - 12:23:29 CST)
  • Shyno Mathew (Mon Dec 09 2013 - 11:01:38 CST)
  • Shyno Mathew (Sun Dec 08 2013 - 22:40:58 CST)
  • Shyno Mathew (Wed Dec 04 2013 - 10:41:18 CST)
  • John Stone (Tue Dec 03 2013 - 10:46:15 CST)
  • Josh Vermaas (Tue Dec 03 2013 - 10:08:48 CST)
  • Shyno Mathew (Mon Dec 02 2013 - 11:42:37 CST)
• DOPC membrane
  • JC Gumbart (Tue Feb 15 2011 - 19:52:11 CST)
  • snoze pa (Tue Feb 15 2011 - 17:35:24 CST)
• dots per inch?
  • Dan Strahs (Wed Oct 19 2005 - 16:46:02 CDT)
  • Chang, Christopher (Wed Oct 19 2005 - 15:26:46 CDT)
  • John Stone (Wed Oct 19 2005 - 14:56:23 CDT)
  • Kelvin Luther (Wed Oct 19 2005 - 14:01:18 CDT)
• Double bond in VMD
  • Parvez Mh (Wed Oct 21 2015 - 17:45:25 CDT)
• double bonds
  • J. Rui Rodrigues (Thu Sep 24 2009 - 07:22:09 CDT)
  • Taufik Al-Sarraj (Wed Sep 23 2009 - 13:13:12 CDT)
  • John Stone (Wed Sep 23 2009 - 13:17:09 CDT)
  • Taufik Al-Sarraj (Wed Sep 23 2009 - 12:22:27 CDT)
• double image for one eye with crystal eyes stereo
  • John Stone (Fri Jun 13 2003 - 10:13:58 CDT)
  • John Stone (Fri Jun 13 2003 - 10:04:58 CDT)
  • Dr. Daniel James White PhD (Fri Jun 13 2003 - 03:50:12 CDT)
  • Dr. Daniel James White PhD (Fri Jun 13 2003 - 03:38:01 CDT)
  • John Stone (Thu Jun 12 2003 - 11:24:51 CDT)
  • John Stone (Thu Jun 12 2003 - 11:07:01 CDT)
  • Bogdan Costescu (Thu Jun 12 2003 - 11:02:01 CDT)
  • Bogdan Costescu (Thu Jun 12 2003 - 10:41:47 CDT)
  • John Stone (Thu Jun 12 2003 - 10:11:43 CDT)
  • Dr. Daniel James White PhD (Thu Jun 12 2003 - 09:48:30 CDT)
  • Bogdan Costescu (Thu Jun 12 2003 - 09:34:36 CDT)
  • Dr. Daniel James White PhD (Thu Jun 12 2003 - 08:38:37 CDT)
• doubling a membrane
  • Cesar Luis Avila (Tue Nov 11 2008 - 18:44:07 CST)
  • Cesar Luis Avila (Tue Nov 11 2008 - 13:23:33 CST)
  • Peter Freddolino (Mon Nov 10 2008 - 17:29:24 CST)
  • Edward Lyman (Mon Nov 10 2008 - 16:42:13 CST)
• doubts in movie making using vmd.
  • John Stone (Wed Mar 28 2007 - 21:52:17 CDT)
  • Axel Kohlmeyer (Wed Mar 28 2007 - 21:47:12 CDT)
  • gadde suneetha (Wed Mar 28 2007 - 19:05:05 CDT)
• download pdb files from PDB with vmd 1.8.4b10
  • John Stone (Thu Apr 06 2006 - 09:36:28 CDT)
  • Vlad Cojocaru (Thu Apr 06 2006 - 03:55:16 CDT)
• Download the newest version of VMD
  • Axel Kohlmeyer (Mon Jan 19 2009 - 10:09:33 CST)
  • Carsten Olbrich (Mon Jan 19 2009 - 05:05:08 CST)
  • ÖÜÎIJý (Mon Jan 19 2009 - 04:15:52 CST)
• Download vmd for 64-bit Intel Itanium
  • John Stone (Mon Nov 05 2007 - 16:55:20 CST)
  • FyD (Mon Nov 05 2007 - 15:00:36 CST)
• Downloadable version
  • chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 02:51:04 CDT)
• Dowser Availability
  • John Stone (Mon Jul 16 2018 - 17:50:50 CDT)
  • Giacomo Fiorin (Mon Jul 16 2018 - 16:14:13 CDT)
  • Giacomo Fiorin (Mon Jul 16 2018 - 15:53:03 CDT)
  • McGuire, Kelly (Mon Jul 16 2018 - 14:54:05 CDT)
• Dowser files and manual
  • John Stone (Tue Jul 24 2012 - 23:19:26 CDT)
  • Sebastián Gutiérrez (Tue Jul 24 2012 - 18:50:37 CDT)
• Dowser installation trouble
  • John Stone (Tue Jan 14 2014 - 17:10:22 CST)
  • James Marsh (Tue Dec 03 2013 - 03:09:29 CST)
• Dowser-plugin with RNA
  • Behrmann, Elmar (Wed Oct 16 2013 - 07:36:12 CDT)
• DOWSER: child process exited abnormally
  • Leonardo Trabuco (Thu Apr 26 2007 - 11:27:53 CDT)
  • Robert Selwyne (Thu Apr 26 2007 - 06:57:03 CDT)
• DPPC
  • Eduard Schreiner (Thu Jul 08 2010 - 23:42:27 CDT)
  • jouko_at_uchicago.edu (Thu Jul 08 2010 - 22:21:25 CDT)
• DPPC Bilayer Size
  • JC Gumbart (Fri Sep 15 2006 - 19:46:30 CDT)
  • Akshay Patny (Fri Sep 15 2006 - 12:07:51 CDT)
  • Axel Kohlmeyer (Thu Sep 14 2006 - 18:26:45 CDT)
  • L. Michel Espinoza-Fonseca (Thu Sep 14 2006 - 18:11:28 CDT)
  • Ting Wang (Thu Sep 14 2006 - 17:27:55 CDT)
  • Akshay Patny (Thu Sep 14 2006 - 13:49:06 CDT)
• Drastically different number of suboptimal paths in similar simulations
  • amin sagar (Tue Apr 10 2018 - 10:17:54 CDT)
• Draw a box cell for a crystal
  • Bjoern Olausson (Wed Sep 15 2010 - 08:19:32 CDT)
  • Axel Kohlmeyer (Wed Sep 15 2010 - 08:15:50 CDT)
  • Germain Vallverdu (Wed Sep 15 2010 - 06:43:35 CDT)
• Draw a circle
  • John Stone (Fri Mar 23 2007 - 10:25:36 CDT)
  • Abi Ghanem josephine (Fri Mar 23 2007 - 09:47:12 CDT)
• draw a time bar for a trajectory
  • Davide Mercadante (Tue Sep 24 2013 - 01:28:58 CDT)
  • Axel Kohlmeyer (Mon Sep 23 2013 - 11:13:35 CDT)
  • Davide Mercadante (Mon Sep 23 2013 - 09:53:24 CDT)
• draw a vector
  • John Stone (Sat Nov 30 2002 - 15:17:39 CST)
  • Nguyen Hoang Phuong (Thu Nov 28 2002 - 07:59:56 CST)
• Draw arrows in trajectory file
  • Amit Gupta (Tue Dec 20 2016 - 09:54:03 CST)
  • Ajasja LjubetiÄ� (Tue Dec 20 2016 - 08:50:20 CST)
  • Axel Kohlmeyer (Tue Dec 20 2016 - 08:27:51 CST)
  • Ashar Malik (Tue Dec 20 2016 - 07:35:02 CST)
  • Ajasja LjubetiÄ� (Tue Dec 20 2016 - 07:29:58 CST)
  • Amit Gupta (Tue Dec 20 2016 - 07:25:02 CST)
  • Ashar Malik (Tue Dec 20 2016 - 06:41:58 CST)
  • Amit Gupta (Tue Dec 20 2016 - 06:28:54 CST)
  • Ashar Malik (Tue Dec 20 2016 - 06:19:33 CST)
  • Amit Gupta (Tue Dec 20 2016 - 03:45:40 CST)
  • Amit Gupta (Tue Dec 20 2016 - 00:31:18 CST)
• draw bond across cell boudary
  • Nima Nouri (Fri Jan 21 2011 - 01:01:23 CST)
  • pascal boulet (Thu Jan 20 2011 - 15:47:44 CST)
• Draw Bonds
  • John Stone (Mon Aug 08 2005 - 18:48:11 CDT)
  • Joshua D. Moore (Mon Aug 08 2005 - 14:48:05 CDT)
  • Bob Johnson (Mon Aug 08 2005 - 10:42:13 CDT)
• draw command
  • Justin Gullingsrud (Thu Apr 01 2004 - 11:17:30 CST)
  • Vlad Cojocaru (Thu Apr 01 2004 - 09:30:13 CST)
• draw command with different material
  • John Stone (Thu Feb 26 2009 - 23:46:09 CST)
  • BIN ZHANG (Thu Feb 26 2009 - 23:31:08 CST)
• Draw cylinder with two different diameters for the endpoints (cone)
  • John Stone (Wed Oct 07 2015 - 16:38:27 CDT)
  • Ebert Maximilian (Wed Oct 07 2015 - 11:35:27 CDT)
  • Ebert Maximilian (Wed Oct 07 2015 - 11:21:08 CDT)
• draw geometrical objects on specific frames
  • John Stone (Thu Sep 25 2014 - 09:34:30 CDT)
  • Bin Liu (Mon Sep 22 2014 - 11:44:59 CDT)
• draw hydrophobic contact
  • Nuno Ricardo Loureiro Ferreira (Sat Dec 02 2006 - 03:18:05 CST)
  • Nuno Ricardo Loureiro Ferreira (Thu Nov 30 2006 - 15:11:28 CST)
  • gcmc jie (Thu Nov 30 2006 - 13:41:10 CST)
• Draw in a new layer problems
  • Axel Kohlmeyer (Fri May 16 2008 - 10:48:12 CDT)
  • Peter Freddolino (Fri May 16 2008 - 09:09:43 CDT)
  • Nuno Sousa Cerqueira (Fri May 16 2008 - 08:36:58 CDT)
• draw intersection volume between two spheres
  • Axel Kohlmeyer (Wed Sep 07 2011 - 10:35:43 CDT)
  • Filip Persson (Wed Sep 07 2011 - 08:30:33 CDT)
• draw line
  • John Stone (Fri Jan 26 2007 - 17:16:22 CST)
  • Narender Singh Maan (Fri Jan 26 2007 - 17:01:14 CST)
• draw lines
  • John Stone (Mon Jun 21 2004 - 14:02:54 CDT)
  • Osmany Guirola Cruz (Wed May 26 2004 - 07:36:13 CDT)
  • Axel Kohlmeyer (Wed May 26 2004 - 01:01:05 CDT)
  • Osmany Guirola Cruz (Tue May 25 2004 - 13:02:36 CDT)
• draw multiple frames
  • John Stone (Mon Dec 01 2003 - 12:16:16 CST)
  • Karunesh Arora (Fri Nov 28 2003 - 21:30:03 CST)
• draw structure with xyz coordinates
  • DanLiu (Tue Feb 12 2013 - 02:09:37 CST)
  • Heather Mayes (Mon Feb 11 2013 - 16:40:22 CST)
  • Axel Kohlmeyer (Mon Feb 11 2013 - 11:06:47 CST)
  • DanLiu (Mon Feb 11 2013 - 09:46:48 CST)
• draw text or title in pov
  • John Stone (Thu Apr 04 2002 - 21:56:25 CST)
  • Peter Varnai (Thu Apr 04 2002 - 10:04:03 CST)
• Drawing a high resolution transparent or translucent sphere
  • Axel Kohlmeyer (Wed Apr 11 2012 - 23:45:18 CDT)
  • John Stone (Wed Apr 11 2012 - 21:26:58 CDT)
  • Andrew DeYoung (Wed Apr 11 2012 - 20:37:20 CDT)
• drawing a length scale on the vmd display
  • maria goranovic (Tue May 04 2010 - 03:56:00 CDT)
  • maria goranovic (Tue May 04 2010 - 03:01:07 CDT)
• Drawing a line between two atoms
  • Marx Gomes Van der Linden (Mon Jun 16 2008 - 17:10:12 CDT)
• drawing a membrane
  • John Stone (Tue May 08 2007 - 16:34:02 CDT)
  • dimka (Tue May 08 2007 - 15:10:03 CDT)
• drawing a plane
  • John Stone (Tue Jun 29 2004 - 13:45:14 CDT)
  • vivek sharma (Tue Jun 29 2004 - 09:30:00 CDT)
• drawing a truncated octahedron
  • Vlad Cojocaru (Mon Mar 13 2006 - 04:07:17 CST)
  • John Stone (Fri Mar 10 2006 - 18:40:17 CST)
  • Vlad Cojocaru (Wed Mar 08 2006 - 05:26:06 CST)
• Drawing a vector for each particle's velocity
  • John Stone (Tue Apr 21 2015 - 15:32:33 CDT)
  • Hojjat Behmadi (Tue Apr 14 2015 - 13:04:42 CDT)
• Drawing an ellipsoid
  • John Stone (Thu Jun 07 2012 - 15:11:19 CDT)
  • Axel Kohlmeyer (Thu May 31 2012 - 21:14:54 CDT)
  • bsnmrem-obj_at_yahoo.com (Thu May 31 2012 - 16:03:53 CDT)
  • Axel Kohlmeyer (Thu May 31 2012 - 10:35:17 CDT)
  • bsnmrem-obj_at_yahoo.com (Thu May 31 2012 - 08:44:33 CDT)
• Drawing atom - atom bonds
  • Justin Gullingsrud (Mon Sep 16 2002 - 09:44:49 CDT)
  • Yves Frapart (Mon Sep 16 2002 - 11:08:13 CDT)
• drawing bond for coarse grained model
  • Axel Kohlmeyer (Thu Jul 23 2009 - 14:06:53 CDT)
  • Sunjoo Lee (Thu Jul 23 2009 - 13:25:46 CDT)
• drawing bonds
  • Justin Gullingsrud (Tue Mar 25 2003 - 09:40:19 CST)
  • John Stone (Tue Mar 25 2003 - 09:36:38 CST)
  • Lubos Vrbka (Tue Mar 25 2003 - 09:27:05 CST)
• Drawing Bonds in Periodic structure
  • soumyajyoti haldar (Tue Mar 01 2011 - 03:50:36 CST)
  • Olaf Lenz (Tue Mar 01 2011 - 03:06:06 CST)
  • soumyajyoti haldar (Mon Feb 28 2011 - 10:07:32 CST)
• Drawing bonds to metals
  • John Stone (Tue Apr 08 2003 - 17:10:39 CDT)
  • Stephen Koch (Tue Apr 08 2003 - 15:37:08 CDT)
• drawing bonds with vmd/python interface
  • Justin Gullingsrud (Fri Mar 22 2002 - 11:55:45 CST)
  • Sonja M. Schwarzl (Fri Mar 22 2002 - 09:36:46 CST)
• Drawing circles and tooltips.
  • Lee-Ping Wang (Tue Mar 11 2014 - 13:30:02 CDT)
  • Lee-Ping Wang (Tue Mar 04 2014 - 11:52:59 CST)
  • John Stone (Mon Mar 03 2014 - 10:22:46 CST)
  • Lee-Ping Wang (Sat Mar 01 2014 - 17:38:38 CST)
  • Benjamin Kaduk (Fri Feb 28 2014 - 23:22:48 CST)
  • Lee-Ping Wang (Fri Feb 28 2014 - 22:58:59 CST)
  • Lee-Ping Wang (Fri Feb 28 2014 - 23:03:01 CST)
  • Benjamin Kaduk (Fri Feb 28 2014 - 21:57:36 CST)
  • Lee-Ping Wang (Fri Feb 28 2014 - 08:58:35 CST)
• Drawing cylinder in VMD
  • John Stone (Wed Dec 02 2009 - 20:36:13 CST)
  • rainy908_at_yahoo.com (Wed Dec 02 2009 - 20:22:50 CST)
  • rainy908_at_yahoo.com (Wed Dec 02 2009 - 17:29:24 CST)
  • rainy908_at_yahoo.com (Wed Dec 02 2009 - 17:36:00 CST)
  • John Stone (Wed Dec 02 2009 - 17:35:04 CST)
• Drawing electron density surfaces (from cube files)
  • John Stone (Thu Jan 31 2002 - 15:36:29 CST)
  • Francesco Gervasio (Fri Jan 25 2002 - 07:01:41 CST)
• Drawing ellipsoids
  • Johannes Haataja (Tue Jul 25 2023 - 14:10:29 CDT)
• Drawing extended arrow to show direction vector on VMD
  • Axel Kohlmeyer (Tue Jun 23 2015 - 13:51:34 CDT)
  • Bharat Sharma (Tue Jun 23 2015 - 13:41:25 CDT)
  • Bharat Sharma (Tue Jun 23 2015 - 11:45:18 CDT)
  • Josh Vermaas (Tue Jun 23 2015 - 12:34:31 CDT)
  • Axel Kohlmeyer (Tue Jun 23 2015 - 12:12:10 CDT)
• drawing helices from partial aminoacids
  • John Stone (Thu Dec 07 2006 - 11:04:39 CST)
  • Streutker, J (Thu Dec 07 2006 - 04:40:24 CST)
• Drawing hollow circles
  • Peter Mawanga (Tue May 30 2017 - 08:40:32 CDT)
  • John Stone (Wed May 24 2017 - 10:25:36 CDT)
  • Dallas Warren (Tue May 23 2017 - 23:25:35 CDT)
  • Karteek Kumar (Tue May 23 2017 - 21:01:19 CDT)
  • Peter Mawanga (Tue May 23 2017 - 20:58:32 CDT)
  • Karteek Kumar (Tue May 23 2017 - 19:37:56 CDT)
  • Peter Mawanga (Tue May 23 2017 - 19:02:28 CDT)
• drawing lines
  • Peter Freddolino (Tue Nov 25 2008 - 18:23:12 CST)
  • Ryan Pavlovicz (Tue Nov 25 2008 - 12:38:31 CST)
• Drawing Method: Lines does not display anything
  • John Stone (Sat Dec 01 2012 - 23:44:11 CST)
  • Clarinet (Wed Nov 21 2012 - 07:03:03 CST)
  • John Stone (Tue Nov 20 2012 - 10:51:39 CST)
  • Clarinet (Tue Nov 20 2012 - 08:04:09 CST)
• Drawing multiple frames
  • John Stone (Sat May 23 2020 - 02:24:52 CDT)
  • Neena Susan Eappen (Thu May 07 2020 - 17:58:22 CDT)
• drawing objects
  • John Stone (Tue Sep 09 2003 - 02:20:35 CDT)
  • Karunesh Arora (Sat Aug 30 2003 - 08:37:22 CDT)
• Drawing of bonds while trajectory animation.
  • John Stone (Thu Sep 18 2003 - 14:09:30 CDT)
  • Hiroyuki Maeshima (Thu Sep 18 2003 - 07:53:17 CDT)
• drawing of direction vectors for conformational transition
  • Charles McCallum (Thu Sep 14 2006 - 10:42:06 CDT)
  • Axel Kohlmeyer (Thu Sep 14 2006 - 11:25:47 CDT)
  • Peter Freddolino (Wed Sep 13 2006 - 17:34:34 CDT)
  • Axel Kohlmeyer (Wed Sep 13 2006 - 14:18:03 CDT)
  • Zu Thur Yew (Wed Sep 13 2006 - 11:52:45 CDT)
• Drawing oriented cylinders
  • John Stone (Wed Dec 29 2004 - 18:04:17 CST)
  • Jake . (Wed Dec 29 2004 - 14:16:10 CST)
• drawing poligons
  • John Stone (Tue Apr 06 2004 - 09:57:04 CDT)
  • Vlad Cojocaru (Tue Apr 06 2004 - 06:39:54 CDT)
• drawing spheres
  • Andrew Dalke (Wed Nov 19 1997 - 08:03:35 CST)
  • Nithin Rai (Tue Nov 18 1997 - 11:34:14 CST)
• drawing the edges of a non-rectangular box
  • Eduard Schreiner (Fri Mar 11 2005 - 13:02:50 CST)
  • Andre Farias de Moura (Fri Mar 11 2005 - 06:17:46 CST)
• Drawing the simulation box from a Gromacs trajectory
  • Axel Kohlmeyer (Mon Mar 12 2012 - 14:30:23 CDT)
  • Andrew DeYoung (Mon Mar 12 2012 - 12:43:23 CDT)
• drawing trajectory of a molecule
  • L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 09:40:51 CST)
  • L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 09:29:56 CST)
  • Axel Kohlmeyer (Fri Dec 07 2007 - 09:20:28 CST)
  • L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 08:30:04 CST)
• Drawing using variables
  • Axel Kohlmeyer (Mon Feb 21 2011 - 17:14:58 CST)
  • Phelan Jr., Frederick R. Dr. (Mon Feb 21 2011 - 16:01:52 CST)
• Drawing Vectors
  • John Stone (Thu Nov 18 2004 - 17:06:08 CST)
  • John Stone (Wed Nov 17 2004 - 10:23:17 CST)
  • Anthony Ivetac (Tue Nov 16 2004 - 08:53:35 CST)
• drawing waterbox
  • BIN ZHANG (Thu Aug 27 2009 - 11:02:46 CDT)
  • John Stone (Thu Aug 27 2009 - 10:29:08 CDT)
  • Narender Singh Maan (Thu Aug 27 2009 - 10:14:58 CDT)
  • John Stone (Wed Aug 26 2009 - 13:29:10 CDT)
  • Narender Singh Maan (Wed Aug 26 2009 - 09:35:56 CDT)
• drop off in IO speed for bigdcd analysis
  • Mayne, Christopher G (Thu Jul 31 2014 - 10:26:00 CDT)
  • John Stone (Thu Jul 31 2014 - 10:02:02 CDT)
  • Josh Vermaas (Thu Jul 31 2014 - 09:43:50 CDT)
  • Mayne, Christopher G (Wed Jul 30 2014 - 21:20:53 CDT)
• dssp in vmd
  • John Stone (Wed Aug 17 2005 - 14:39:51 CDT)
  • pascal.baillod_at_epfl.ch (Wed Aug 17 2005 - 02:15:11 CDT)
• dssp in vmd (II)
  • John Stone (Fri Jul 27 2007 - 12:42:49 CDT)
  • pascal.baillod_at_epfl.ch (Fri Jul 27 2007 - 05:04:54 CDT)
• dti monitor linux
  • John Stone (Fri Nov 29 2002 - 15:58:59 CST)
  • Peter Tieleman (Fri Nov 29 2002 - 15:12:58 CST)
• dtr plugin: does it work for forces traj?
  • John Stone (Wed Nov 10 2010 - 13:22:07 CST)
  • Edward Lyman (Fri Nov 05 2010 - 11:03:55 CDT)
• dublicated residue name in PDB/PSF
  • daniel aguayo (Wed Feb 01 2006 - 12:24:16 CST)
  • ziemys_at_ecr6.ohio-state.edu (Wed Feb 01 2006 - 09:15:37 CST)
• dumb movie maker question
  • Axel Kohlmeyer (Thu May 03 2007 - 10:16:10 CDT)
  • Nichols A. Romero (Thu May 03 2007 - 10:32:26 CDT)
• dummy atom ?
  • John Stone (Wed Feb 02 2005 - 09:59:34 CST)
  • mbb (Wed Feb 02 2005 - 09:50:21 CST)
• dummy atoms and FEP
  • Peter Freddolino (Thu Apr 06 2006 - 11:45:26 CDT)
  • Raul Araya Secchi (Thu Apr 06 2006 - 11:32:32 CDT)
• dump to vmd
  • Axel Kohlmeyer (Sun Jun 24 2012 - 06:44:01 CDT)
  • Ramin Ekhteiari (Sun Jun 24 2012 - 04:19:57 CDT)
• Dumping the coordinates of single frame
  • karthik kumar (Wed Apr 22 2015 - 05:02:58 CDT)
  • karthik kumar (Wed Apr 22 2015 - 05:01:04 CDT)
• duplicate atom coordinates in PDB files
  • John Stone (Mon Feb 16 2004 - 15:10:06 CST)
  • Streiff, John H. (Mon Feb 16 2004 - 11:57:51 CST)
• duplicate frames / slow down movie
  • Axel Kohlmeyer (Tue Jan 25 2011 - 08:55:42 CST)
  • Nicolas Belloy (Tue Jan 25 2011 - 07:50:10 CST)
• Duplicate option in fftk
  • Mayne, Christopher G (Thu Sep 13 2012 - 19:58:48 CDT)
  • ehsan zahedinejad (Thu Sep 13 2012 - 18:53:39 CDT)
• Duplicate VMD-L emails...
  • John Stone (Tue Jun 05 2007 - 13:11:26 CDT)
• duplicating an equilibrated system with psfgen
  • Gianluca Lattanzi (Wed Oct 17 2012 - 11:11:09 CDT)
• duration of video mpeg
  • Andres Palencia (Mon Dec 04 2006 - 06:12:51 CST)
  • Bogdan Costescu (Mon Dec 04 2006 - 05:18:53 CST)
  • Axel Kohlmeyer (Sun Dec 03 2006 - 16:31:58 CST)
  • Andres Palencia (Sun Dec 03 2006 - 13:07:28 CST)
  • Axel Kohlmeyer (Sun Dec 03 2006 - 09:39:28 CST)
  • Andres Palencia (Sat Dec 02 2006 - 11:39:04 CST)
• dx file format
  • Edward Lyman (Tue Mar 12 2013 - 10:35:06 CDT)
  • Axel Kohlmeyer (Mon Mar 11 2013 - 23:30:27 CDT)
  • Edward Lyman (Mon Mar 11 2013 - 20:23:55 CDT)
  • Edward Lyman (Mon Mar 11 2013 - 16:41:46 CDT)
• DX potential files
  • John Stone (Tue Jul 24 2012 - 10:33:23 CDT)
  • raunest (Tue Jul 24 2012 - 03:35:37 CDT)
  • John Stone (Thu Jul 12 2012 - 10:45:37 CDT)
  • Abolfazl Bayat (Thu Jun 28 2012 - 04:10:23 CDT)
• Dynamic 'Determine file type' list in main menu !?!
  • John Stone (Tue May 01 2007 - 12:38:46 CDT)
  • Axel Kohlmeyer (Fri Apr 27 2007 - 09:02:09 CDT)
  • Rob (Fri Apr 27 2007 - 01:14:37 CDT)
• dynamic atom selection
  • Axel Kohlmeyer (Tue Nov 09 2010 - 11:06:31 CST)
  • Jérôme Hénin (Tue Nov 09 2010 - 08:28:49 CST)
  • Axel Kohlmeyer (Tue Nov 09 2010 - 08:10:49 CST)
  • Ajasja LjubetiÄ� (Tue Nov 09 2010 - 08:06:58 CST)
  • Leonardo Trabuco (Tue Nov 09 2010 - 08:01:15 CST)
  • Stephen Cox (Tue Nov 09 2010 - 07:11:58 CST)
• Dynamic atomselect
  • Micha³ Jakub Kañski (Thu Oct 30 2014 - 11:49:36 CDT)
  • Ondrej Kroutil (Thu Oct 30 2014 - 11:07:02 CDT)
  • Josh Vermaas (Thu Oct 30 2014 - 09:55:16 CDT)
  • Ondrej Kroutil (Thu Oct 30 2014 - 08:49:09 CDT)
• Dynamic bond calculation
  • John Stone (Tue Aug 29 2006 - 14:27:46 CDT)
  • Ignacio Fernández Galván (Tue Aug 29 2006 - 02:49:30 CDT)
• dynamic bond making/breaking formats
  • Vermaas, Joshua (Fri Jun 30 2017 - 18:04:29 CDT)
  • Axel Kohlmeyer (Fri Jun 30 2017 - 17:49:12 CDT)
  • MD Simulation (Fri Jun 30 2017 - 17:11:24 CDT)
• Dynamic bond representations
  • Heather Mayes (Tue Jan 22 2013 - 19:27:14 CST)
  • Josh Vermaas (Tue Jan 22 2013 - 18:18:52 CST)
  • Peitong Duan (Tue Jan 22 2013 - 16:44:02 CST)
• dynamic bonding
  • Axel Kohlmeyer (Tue Mar 27 2007 - 15:48:22 CDT)
  • John Stone (Tue Mar 27 2007 - 15:39:26 CDT)
  • Zheng Hu (Tue Mar 27 2007 - 14:21:02 CDT)
• Dynamic bonds across PBC
  • MD Simulation (Sat Nov 27 2021 - 07:46:25 CST)
  • Axel Kohlmeyer (Sat Nov 27 2021 - 07:45:18 CST)
  • MD Simulation (Sat Nov 27 2021 - 07:01:37 CST)
• Dynamic bonds and H2 molecules.
  • Axel Kohlmeyer (Wed Nov 14 2007 - 04:07:00 CST)
  • David Schall (Tue Nov 13 2007 - 11:17:30 CST)
• Dynamic bonds for amorphous silicon carbide?
  • Axel Kohlmeyer (Fri Feb 15 2013 - 05:20:31 CST)
  • Bjørnar Jensen (Fri Feb 15 2013 - 04:09:18 CST)
  • Dave Schall (Thu Feb 14 2013 - 13:52:07 CST)
• Dynamic Bonds Question
  • Brian Radak (Wed Oct 31 2018 - 17:42:53 CDT)
  • Vermaas, Joshua (Wed Oct 31 2018 - 15:46:23 CDT)
  • McGuire, Kelly (Wed Oct 31 2018 - 14:52:09 CDT)
  • Vermaas, Joshua (Wed Oct 31 2018 - 14:20:13 CDT)
  • McGuire, Kelly (Wed Oct 31 2018 - 13:46:04 CDT)
  • McGuire, Kelly (Wed Oct 31 2018 - 12:58:01 CDT)
• dynamic bonds question??
  • John Stone (Thu Sep 09 2004 - 17:38:07 CDT)
  • David Schall (Thu Sep 09 2004 - 16:20:47 CDT)
• dynamic coloring
  • John Stone (Wed Apr 06 2005 - 13:49:01 CDT)
  • Leonor Cruzeiro (Mon Apr 04 2005 - 11:22:02 CDT)
  • John Stone (Fri Jan 21 2005 - 17:26:46 CST)
  • Jay Lee (Fri Jan 21 2005 - 12:36:39 CST)
• dynamic cross correlation map
  • Prof. Eddie (Thu May 16 2013 - 09:29:32 CDT)
  • Mark Cunningham (Wed May 15 2013 - 10:58:17 CDT)
  • Prof. Eddie (Tue May 14 2013 - 11:12:26 CDT)
• dynamic cross-correlation Map(DCCM)?
  • John Stone (Tue Apr 24 2018 - 16:56:19 CDT)
  • Gu, Wenze (Sat Apr 21 2018 - 21:48:02 CDT)
• Dynamic lines
  • John Stone (Wed Nov 02 2011 - 14:12:35 CDT)
  • Bogdan Costescu (Wed Nov 02 2011 - 13:42:01 CDT)
  • John Stone (Mon Oct 31 2011 - 16:18:33 CDT)
  • Axel Kohlmeyer (Mon Oct 31 2011 - 14:32:47 CDT)
  • Bogdan Costescu (Mon Oct 31 2011 - 13:21:59 CDT)
• Dynamic molecular connectivity
  • Axel Kohlmeyer (Sat Jun 06 2015 - 15:51:20 CDT)
  • Eric Smoll (Sat Jun 06 2015 - 14:55:07 CDT)
  • Axel Kohlmeyer (Sat Jun 06 2015 - 13:28:17 CDT)
  • Eric Smoll (Fri Jun 05 2015 - 22:31:53 CDT)
• Dynamic number of atoms visualization
  • Axel Kohlmeyer (Sat Jul 20 2013 - 07:46:18 CDT)
  • amit kunte (Sat Jul 20 2013 - 07:31:42 CDT)
  • Axel Kohlmeyer (Sat Jul 20 2013 - 06:42:50 CDT)
  • amit kunte (Sat Jul 20 2013 - 05:36:19 CDT)
• Dynamic selection of residues in a trajectory
  • Sanjeev B.S. (Wed May 19 2004 - 08:53:36 CDT)
  • Axel Kohlmeyer (Wed May 19 2004 - 08:45:05 CDT)
  • Sanjeev B.S. (Wed May 19 2004 - 04:34:24 CDT)
• Dynamic selection of residues on a trajectory
  • amit_at_mbu.iisc.ernet.in (Tue Nov 07 2006 - 11:07:13 CST)
  • amit_at_mbu.iisc.ernet.in (Tue Nov 07 2006 - 10:45:19 CST)
• Dynamical bond rendering
  • Axel Kohlmeyer (Sat Apr 05 2014 - 02:35:50 CDT)
  • Caro Miguel (Sat Apr 05 2014 - 01:36:34 CDT)
• dynamical list of atoms
  • John Stone (Wed Sep 06 2006 - 11:01:29 CDT)
  • Axel Kohlmeyer (Wed Sep 06 2006 - 10:54:30 CDT)
  • Silvina Matysiak (Wed Sep 06 2006 - 10:02:25 CDT)
• Dynamical Network Analysis
  • liushiyong (Thu Dec 20 2018 - 04:36:04 CST)
  • Ð�лекÑ�андр Кошкаров (Thu Dec 20 2018 - 02:53:47 CST)
• Dynamical Network Analysis (Network View) -- Please help
  • Anurag Sethi (Mon Sep 01 2014 - 14:05:21 CDT)
  • mason H (Mon Sep 01 2014 - 13:27:25 CDT)
• Dynamical Network Analysis (NetworkView): Changing contact cutoff values for edges
  • Fotis Baltoumas (Tue Aug 26 2014 - 11:01:55 CDT)
  • Kirby Vandivort (Tue Aug 26 2014 - 10:53:27 CDT)
  • Fotis Baltoumas (Tue Aug 26 2014 - 10:39:47 CDT)
• Dynamical Network Analysis -- Question on Nodes and Restrictions
  • mason H (Wed Aug 27 2014 - 21:38:53 CDT)
• dynamical network analysis on GROMACS trajectories
  • Payman Pirzadeh (Thu May 16 2013 - 14:46:23 CDT)
• Dynamical Network Analysis programs gncommunities and subopt
  • elena ermakova (Sat Apr 14 2012 - 01:40:33 CDT)
• Dynamical network analysis-NetworkView
  • Kirby Vandivort (Tue Jul 09 2013 - 11:29:29 CDT)
  • Ciara McCormack (Thu Jul 04 2013 - 04:17:14 CDT)
• Dynamical network analysis-NetworkView-error
  • Aliakbartehrani Zahra (Mon Nov 25 2019 - 04:56:22 CST)
• dynamically changing label...
  • John Stone (Mon Oct 10 2005 - 16:15:02 CDT)
  • Ravinder Abrol (Mon Oct 10 2005 - 16:12:52 CDT)
  • John Stone (Mon Oct 10 2005 - 14:54:18 CDT)
  • Ravinder Abrol (Thu Oct 06 2005 - 02:27:26 CDT)
• Dynamically displaying the length of hydrogen bonds
  • Axel Kohlmeyer (Fri Mar 30 2012 - 12:44:35 CDT)
  • Andrew DeYoung (Fri Mar 30 2012 - 11:54:56 CDT)
  • Wang Yi (Fri Mar 30 2012 - 11:24:22 CDT)
  • Andrew DeYoung (Fri Mar 30 2012 - 10:30:08 CDT)
• Dynamically updating water colors for each frame of a trajectory
  • J. Nathan Scott (Wed Feb 23 2011 - 12:10:38 CST)
  • Jérôme Hénin (Thu Feb 17 2011 - 04:10:04 CST)
  • Axel Kohlmeyer (Wed Feb 16 2011 - 18:01:35 CST)
  • J. Nathan Scott (Wed Feb 16 2011 - 17:17:28 CST)
• DynamicBonding
  • Ziemys, Arturas (Fri Apr 09 2010 - 15:34:09 CDT)
  • Axel Kohlmeyer (Fri Apr 09 2010 - 15:43:03 CDT)
  • Ziemys, Arturas (Fri Apr 09 2010 - 15:50:58 CDT)
  • Axel Kohlmeyer (Fri Apr 09 2010 - 15:23:38 CDT)
  • Ziemys, Arturas (Fri Apr 09 2010 - 14:10:56 CDT)
• DynamicBonds representation
  • John Stone (Thu Dec 16 2004 - 13:33:13 CST)
  • Axel Kohlmeyer (Thu Dec 16 2004 - 13:04:27 CST)
  • Lars Bruno Hansen (Thu Dec 16 2004 - 08:58:39 CST)
• E-D stereo glasses
  • John Stone (Sat Mar 03 2007 - 14:09:22 CST)
  • aneamtu_at_iasi.mednet.ro (Sat Mar 03 2007 - 04:44:51 CST)
• Early access to VMD builds with full-time interactive ray tracing display mode (Tachyon RTX RTRT)
  • John Stone (Tue Oct 19 2021 - 20:51:07 CDT)
  • Gumbart, JC (Tue Oct 19 2021 - 19:58:12 CDT)
  • John Stone (Tue Oct 19 2021 - 13:27:56 CDT)
• Early bird extended! ISQBP2016 meeting - Bergen Norway
  • Vlad Cojocaru (Mon Apr 18 2016 - 14:34:56 CDT)
• Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4)
  • FX (Sun May 03 2020 - 07:16:23 CDT)
  • John Stone (Tue Apr 28 2020 - 13:25:08 CDT)
  • FX (Tue Apr 28 2020 - 13:18:37 CDT)
  • John Stone (Tue Apr 28 2020 - 11:29:38 CDT)
  • FX (Sun Apr 26 2020 - 14:49:37 CDT)
  • John Stone (Sun Apr 26 2020 - 14:33:34 CDT)
  • John Stone (Sun Apr 26 2020 - 14:29:43 CDT)
  • FX (Sun Apr 26 2020 - 04:49:57 CDT)
  • FX (Sun Apr 26 2020 - 04:27:14 CDT)
  • John Stone (Sat Apr 25 2020 - 21:55:20 CDT)
  • John Stone (Sat Apr 25 2020 - 22:07:53 CDT)
  • Mustafa Tekpinar (Sat Apr 25 2020 - 19:37:45 CDT)
  • FX (Sat Apr 25 2020 - 08:25:09 CDT)
  • John Stone (Fri Apr 24 2020 - 00:46:13 CDT)
  • FX (Sat Apr 18 2020 - 07:16:45 CDT)
  • John Stone (Fri Apr 17 2020 - 22:23:30 CDT)
  • FX (Fri Apr 17 2020 - 17:42:29 CDT)
  • John Stone (Fri Apr 17 2020 - 16:04:27 CDT)
  • John Stone (Fri Apr 17 2020 - 14:30:59 CDT)
• Easy way to add hydrogens and get their internal coordinates?
  • Nick Palmer (Wed Jun 20 2018 - 12:42:00 CDT)
  • Nick Palmer (Wed Jun 20 2018 - 12:38:12 CDT)
  • Peter Freddolino (Fri Jun 15 2018 - 12:27:16 CDT)
  • Vermaas, Joshua (Fri Jun 15 2018 - 04:51:49 CDT)
  • Nick Palmer (Thu Jun 14 2018 - 13:27:56 CDT)
• easy way to adjust dihedral angles?
  • Peter Freddolino (Fri Nov 02 2007 - 14:29:14 CDT)
  • Samuel Flores (Thu Nov 01 2007 - 13:58:13 CDT)
• ed and vmd
  • John Stone (Mon Mar 12 2007 - 17:23:24 CDT)
  • Nadine Utz (Abt. Koslowski) (Mon Mar 12 2007 - 12:58:49 CDT)
• edit pdb file
  • Josh Vermaas (Wed Feb 20 2013 - 19:27:45 CST)
  • hamid mosaddeghi (Wed Feb 20 2013 - 18:03:13 CST)
• editing distance.tcl
  • debra ragland (Mon Feb 15 2016 - 08:23:38 CST)
• Editing in Molefacture plugin by importing pdb file
  • Him Bandhu Upadhyay (Thu Jan 17 2013 - 11:49:41 CST)
  • Him Bandhu Upadhyay (Thu Jan 17 2013 - 10:36:52 CST)
• ehrenfest dynamics
  • surya narayanan chandrasekaran (Fri Sep 20 2013 - 04:58:06 CDT)
• eigen values
  • Axel Kohlmeyer (Thu Aug 02 2007 - 11:51:00 CDT)
  • Myunggi Yi (Wed Aug 01 2007 - 14:36:00 CDT)
• Eigen values of Moment of Intertia Tensor
  • greddy1_at_umd.edu (Fri Apr 25 2008 - 15:12:19 CDT)
  • greddy1_at_umd.edu (Fri Apr 25 2008 - 10:19:52 CDT)
• EIGENVECTOR ANALYSIS
  • John Stone (Wed Oct 25 2006 - 12:40:57 CDT)
  • Tim Meyer (Tue Oct 24 2006 - 08:25:47 CDT)
• Elastic Properties
  • John Stone (Wed Nov 15 2006 - 18:07:44 CST)
  • Jennifer A Carvajal (Tue Nov 14 2006 - 14:51:13 CST)
• electric field
  • Ekta Khurana (Sat Sep 02 2006 - 20:21:23 CDT)
• Electron density
  • John Stone (Thu Jan 24 2008 - 18:08:52 CST)
  • Kristin Wunsch (Wed Jan 23 2008 - 09:03:12 CST)
• Electron Density Map Display
  • John Stone (Tue Apr 09 2002 - 13:02:21 CDT)
• electron density map is shifted?
  • John Stone (Thu Aug 09 2007 - 14:57:55 CDT)
  • John Stone (Thu Jul 12 2007 - 22:28:21 CDT)
  • Gunnar Schroeder (Thu Jul 12 2007 - 19:14:01 CDT)
• Electron density profile
  • Cesar Luis Avila (Thu May 31 2007 - 11:30:29 CDT)
• Electron microscopy surface with VMD?
  • John Stone (Thu Jul 12 2007 - 16:57:22 CDT)
  • Emmanuel Levy (Thu Jul 12 2007 - 16:37:18 CDT)
• Electrostatic - PMEpot
  • daniel aguayo (Mon Jun 16 2008 - 09:02:08 CDT)
  • Leonardo Trabuco (Fri Jun 13 2008 - 13:13:00 CDT)
  • daniel aguayo (Fri Jun 13 2008 - 12:23:22 CDT)
• electrostatic energy
  • Peter Freddolino (Wed Aug 15 2007 - 09:07:39 CDT)
  • emra Heshmati (Wed Aug 15 2007 - 08:20:16 CDT)
• Electrostatic interaction calculations using the NAMD Energy Plugin and PME
  • John Stone (Wed Sep 13 2017 - 11:51:55 CDT)
  • Michael LeVine (Tue Sep 12 2017 - 09:37:30 CDT)
• electrostatic map render problem
  • Axel Kohlmeyer (Wed Oct 18 2006 - 11:56:21 CDT)
  • Matthieu.Chavent_at_edam.uhp-nancy.fr (Wed Oct 18 2006 - 09:36:14 CDT)
• electrostatic potential
  • John Stone (Mon Sep 29 2008 - 16:57:39 CDT)
  • Raluca Mihaela ANDREI (Fri Sep 26 2008 - 09:38:52 CDT)
  • Raluca Mihaela ANDREI (Wed Sep 24 2008 - 10:46:54 CDT)
  • John Stone (Wed Sep 24 2008 - 10:50:29 CDT)
  • John Stone (Sat Sep 20 2008 - 02:19:15 CDT)
  • Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
  • John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
  • Raluca Mihaela ANDREI (Tue Sep 16 2008 - 03:28:02 CDT)
  • John Stone (Wed Dec 13 2006 - 15:56:25 CST)
  • Axel Kohlmeyer (Wed Dec 13 2006 - 15:11:27 CST)
  • ivana adamovic (Wed Dec 13 2006 - 14:15:09 CST)
• electrostatic potential along channel axis
  • Vermaas, Joshua (Thu Aug 31 2017 - 11:59:40 CDT)
  • Williams Miranda (Thu Aug 31 2017 - 09:55:39 CDT)
  • Williams Miranda (Wed Aug 30 2017 - 16:25:28 CDT)
• Electrostatic potential mapping
  • John Stone (Mon Nov 15 2004 - 15:40:21 CST)
  • Patti Schaefer (Mon Nov 15 2004 - 15:28:15 CST)
• Electrostatic potential maps
  • Francesco Pietra (Sat May 23 2020 - 03:20:02 CDT)
• electrostatic potential maps in vmd
  • Andrei A Golosov (Fri Mar 10 2006 - 12:17:50 CST)
  • John Stone (Fri Mar 10 2006 - 11:24:47 CST)
  • Andrei A Golosov (Fri Mar 10 2006 - 10:52:14 CST)
• electrostatic potential maps.
  • Guanglei Cui (Wed Jun 08 2011 - 10:56:40 CDT)
  • John Stone (Wed Apr 06 2011 - 16:39:41 CDT)
  • John Stone (Wed Apr 06 2011 - 16:23:13 CDT)
  • Raul Araya (Wed Apr 06 2011 - 13:13:58 CDT)
• Electrostatic Potential membrane pores
  • Satyan Sharma (Tue Mar 30 2021 - 03:52:44 CDT)
• Electrostatic potential values
  • John Stone (Fri Jan 29 2021 - 14:37:42 CST)
  • Araz Jakalian (Fri Jan 29 2021 - 08:29:12 CST)
• element Si
  • Axel Kohlmeyer (Fri Jul 09 2004 - 12:11:46 CDT)
  • Peter Deák (Fri Jul 09 2004 - 06:59:03 CDT)
• eliminate atoms from psf and pdb files
  • Axel Kohlmeyer (Tue Jan 06 2009 - 12:33:37 CST)
  • Peter Freddolino (Tue Jan 06 2009 - 11:51:45 CST)
  • caterinabernini_at_unisi.it (Tue Jan 06 2009 - 11:40:15 CST)
• ellipsoidal particles
  • Axel Kohlmeyer (Mon Apr 22 2013 - 02:42:08 CDT)
  • farrokh yousefi (Mon Apr 22 2013 - 02:28:15 CDT)
  • Olaf Lenz (Mon Apr 22 2013 - 01:44:15 CDT)
  • Axel Kohlmeyer (Sun Apr 21 2013 - 11:24:15 CDT)
  • farrokh yousefi (Sun Apr 21 2013 - 10:33:18 CDT)
  • Aleksei Aksimentiev (Mon May 03 2010 - 16:14:13 CDT)
  • John Stone (Mon May 03 2010 - 15:05:03 CDT)
  • Axel Kohlmeyer (Sun May 02 2010 - 15:08:54 CDT)
  • Germain Vallverdu (Sun May 02 2010 - 14:10:43 CDT)
• Elliptic molecules
  • Erik Abrahamsson (Tue Jun 30 2009 - 18:25:41 CDT)
  • John Stone (Fri Jul 16 2004 - 10:09:06 CDT)
  • Olaf Lenz (Fri Jul 16 2004 - 09:07:36 CDT)
  • John Stone (Fri Jul 16 2004 - 00:58:02 CDT)
  • Andrew Dalke (Thu Jul 15 2004 - 15:35:47 CDT)
  • John Stone (Thu Jul 15 2004 - 10:40:55 CDT)
  • Olaf Lenz (Thu Jul 15 2004 - 09:56:21 CDT)
  • Leonid Paramonov (Thu Jul 15 2004 - 07:10:01 CDT)
• embed a protein that includes a ligand into the membrane
  • Suresh (Thu Oct 10 2013 - 23:36:02 CDT)
  • John Stone (Thu Oct 10 2013 - 22:24:05 CDT)
  • Ramin Ekhteiari (Thu Oct 10 2013 - 12:38:11 CDT)
• embed VMD in web page
  • Axel Kohlmeyer (Wed Feb 25 2009 - 12:03:34 CST)
  • Xunlei Wu (Wed Feb 25 2009 - 11:21:39 CST)
• embedding proteins in membrane: child killed: segmentation violation
  • John Stone (Fri Aug 28 2015 - 01:33:32 CDT)
  • Atila Petrosian (Sun Aug 23 2015 - 09:59:08 CDT)
• Empirical force fields: release new version of RED Server Dev/PyRED
  • FyD (Mon May 05 2014 - 06:07:18 CDT)
• Empty Extension menu on OSX
  • John Stone (Mon Dec 09 2002 - 17:35:32 CST)
  • Pascal Mercier (Mon Dec 09 2002 - 17:24:52 CST)
• enable direct rendering DRI on fedora core 2
  • Dr. Daniel James White PhD (Fri Jun 11 2004 - 06:50:34 CDT)
• Enabling a menu on the top level
  • John Stone (Wed Apr 20 2005 - 15:43:27 CDT)
  • Palmer, Teresa (Wed Apr 20 2005 - 11:17:43 CDT)
• enantiomers
  • L. Michel Espinoza-Fonseca (Fri Jun 20 2008 - 09:10:31 CDT)
  • Ed Lowe (Fri Jun 20 2008 - 08:38:06 CDT)
• Energy
  • John Stone (Wed Jun 03 2009 - 22:04:04 CDT)
  • Axel Kohlmeyer (Wed Jun 03 2009 - 22:29:45 CDT)
  • Andres Morales N (Wed Jun 03 2009 - 21:50:41 CDT)
• Energy based coloring of residues
  • John Stone (Mon Jul 06 2015 - 16:46:03 CDT)
  • Atreya Dey (Mon Jul 06 2015 - 06:28:54 CDT)
• Energy between desired selected molecules
  • Faezeh Pousaneh (Tue Jul 05 2016 - 13:40:07 CDT)
  • John Stone (Tue Jul 05 2016 - 12:46:48 CDT)
  • Faezeh Pousaneh (Fri Jul 01 2016 - 02:41:40 CDT)
• energy calculation in VMD
  • John Stone (Wed Mar 22 2006 - 16:48:08 CST)
  • lily jin (Wed Mar 22 2006 - 16:41:45 CST)
• Energy contribution analysis
  • eneas_at_usal.es (Wed Aug 28 2013 - 05:42:43 CDT)
• energy minimization of a trajectory with vmd+namd
  • Peter Freddolino (Wed Mar 08 2006 - 10:02:25 CST)
  • John Stone (Wed Mar 08 2006 - 09:39:30 CST)
  • L. Michel Espinoza-Fonseca (Wed Mar 08 2006 - 08:41:37 CST)
• energy partitioning
  • Alexei Rossokhin (Thu Oct 28 2021 - 09:14:27 CDT)
  • Peter Freddolino (Thu Oct 28 2021 - 07:56:37 CDT)
  • Peter Freddolino (Wed Oct 27 2021 - 23:57:32 CDT)
  • Peter Freddolino (Wed Oct 27 2021 - 23:55:46 CDT)
  • John Stone (Wed Oct 27 2021 - 21:32:37 CDT)
  • Alexei Rossokhin (Tue Oct 26 2021 - 06:19:49 CDT)
• Energy plot script
  • Alexandre A. Vakhrouchev (Wed May 14 2008 - 22:11:19 CDT)
• Enhanced Sampling and Free-Energy Calculations Lectures
  • João Ribeiro (Wed Sep 12 2018 - 08:56:28 CDT)
  • João Ribeiro (Mon Sep 10 2018 - 12:02:42 CDT)
• entropy calculation
  • varun dewaker (Tue May 05 2020 - 00:33:14 CDT)
• entropy calculation by g_anaeig
  • Axel Kohlmeyer (Sat Aug 30 2014 - 11:22:28 CDT)
  • sunyeping (Sat Aug 30 2014 - 10:19:03 CDT)
• entropy calculations
  • L. Michel Espinoza-Fonseca (Fri Nov 21 2008 - 16:05:11 CST)
  • Roman Petrenko (Fri Nov 21 2008 - 15:23:07 CST)
  • Roman Petrenko (Fri Nov 21 2008 - 15:16:40 CST)
  • Ioana Cozmuta (Mon Feb 23 2004 - 17:41:54 CST)
• Epsilon, Rmin for copper ions
  • Francesco Pietra (Sat Sep 24 2011 - 03:55:34 CDT)
• EPYC and GTX selection for VMD and NAMD
  • jrhau lung (Fri Jul 03 2020 - 06:33:35 CDT)
• equilibrating a membrane patch
  • Edward Lyman (Mon Dec 08 2008 - 13:25:30 CST)
• Equivalent Mouse Capabilities to Tracker CAVELib
  • John Stone (Mon Feb 09 2009 - 15:24:34 CST)
  • Amr Rizq (Mon Feb 09 2009 - 07:06:26 CST)
• Erro compiling vmd and or fltk
  • John Stone (Sun Jul 16 2000 - 14:12:10 CDT)
  • mark knapp (Sun Jul 16 2000 - 13:37:04 CDT)
• ERROR
  • Axel Kohlmeyer (Wed Mar 09 2011 - 04:17:56 CST)
  • John Stone (Wed Mar 09 2011 - 00:19:45 CST)
  • vani panguluri (Wed Mar 09 2011 - 00:11:59 CST)
• Error "vecscale: parameters must have data" in water interaction step of FFTK
  • Mariano Spivak (Mon Nov 23 2020 - 17:24:53 CST)
  • Alexandre Suman de Araújo (Wed Nov 18 2020 - 15:44:56 CST)
  • Pang, Yui Tik (Wed Nov 18 2020 - 15:15:10 CST)
  • Alexandre Suman de Araújo (Mon Nov 16 2020 - 08:49:36 CST)
• Error (bug?) with Simulated annealing in FFTK-Bond/Angle opt
  • Peter Freddolino (Thu Aug 06 2020 - 10:50:43 CDT)
  • Peter Freddolino (Thu Aug 06 2020 - 10:53:48 CDT)
  • Peter Freddolino (Wed Aug 05 2020 - 21:46:46 CDT)
• Error (incompatible tcl8.5.so) when installing VMD plugins
  • Arash Azari (Sat Nov 14 2015 - 10:34:34 CST)
  • Axel Kohlmeyer (Sat Nov 14 2015 - 09:31:15 CST)
  • Xinqiang Ding (Sat Nov 14 2015 - 07:09:59 CST)
• error - with unknown atom type +CA
  • Peter Freddolino (Thu Jul 12 2007 - 21:56:32 CDT)
  • shyamala (Thu Jul 12 2007 - 13:02:04 CDT)
• error 1114 when loading plugins
  • Giacomo Fiorin (Tue Apr 05 2022 - 13:52:31 CDT)
  • Axel Kohlmeyer (Tue Apr 05 2022 - 13:36:18 CDT)
  • Giacomo Fiorin (Tue Apr 05 2022 - 13:21:56 CDT)
  • John Stone (Tue Apr 05 2022 - 12:16:34 CDT)
  • Eric Ledieu (Tue Apr 05 2022 - 12:07:49 CDT)
• Error 1327.Invalid Drive: F
  • John Stone (Tue Nov 30 2021 - 11:31:47 CST)
  • youtux (Tue Nov 30 2021 - 08:54:36 CST)
• error : invalid command name "psfgen" in 6pti tutorial
  • 本æ�‘肇 (Mon Nov 20 2017 - 23:34:40 CST)
  • Axel Kohlmeyer (Mon Nov 20 2017 - 23:47:19 CST)
  • Ashar Malik (Mon Nov 20 2017 - 23:22:31 CST)
  • 本æ�‘肇 (Mon Nov 20 2017 - 21:47:25 CST)
• Error : Lammps-data file error after merging two structures.
  • Pavan Miriyala (Tue Mar 18 2014 - 10:47:37 CDT)
• error after changing of PYTHONPATH variable
  • Axel Kohlmeyer (Fri Jul 17 2009 - 09:16:22 CDT)
  • Michael Kreim (Fri Jul 17 2009 - 08:51:46 CDT)
  • Axel Kohlmeyer (Fri Jul 17 2009 - 08:22:13 CDT)
  • Michael Kreim (Fri Jul 17 2009 - 07:12:52 CDT)
• Error at Dihedral Optimization using fftk
  • Pawel Kedzierski (Thu Dec 13 2018 - 09:01:46 CST)
  • Gumbart, JC (Wed Dec 12 2018 - 19:15:54 CST)
  • Pawel Kedzierski (Wed Dec 12 2018 - 10:09:45 CST)
  • JC Gumbart (Sun Sep 09 2018 - 13:22:22 CDT)
  • RABIUL ISLAM (Sun Sep 09 2018 - 13:19:36 CDT)
  • JC Gumbart (Sun Sep 09 2018 - 10:52:30 CDT)
  • RABIUL ISLAM (Fri Sep 07 2018 - 14:08:03 CDT)
  • Vermaas, Joshua (Fri Sep 07 2018 - 13:32:40 CDT)
  • RABIUL ISLAM (Fri Sep 07 2018 - 12:42:29 CDT)
  • RABIUL ISLAM (Fri Sep 07 2018 - 04:30:51 CDT)
• error Autoimd
  • John Stone (Wed Jun 21 2006 - 14:24:27 CDT)
  • John Stone (Thu Jun 15 2006 - 15:38:23 CDT)
  • Juan de Dios Lopez Castro (Thu Jun 15 2006 - 04:04:02 CDT)
• Error building VMD plugins from CVS 21.08.2012
  • Vlad Cojocaru (Fri Aug 24 2012 - 10:09:25 CDT)
  • John Stone (Fri Aug 24 2012 - 09:51:53 CDT)
  • Vlad Cojocaru (Fri Aug 24 2012 - 07:15:31 CDT)
  • John Stone (Thu Aug 23 2012 - 09:41:42 CDT)
  • Vlad Cojocaru (Thu Aug 23 2012 - 07:24:39 CDT)
  • Vlad Cojocaru (Thu Aug 23 2012 - 03:00:56 CDT)
  • Vlad Cojocaru (Wed Aug 22 2012 - 10:16:36 CDT)
  • John Stone (Wed Aug 22 2012 - 10:12:30 CDT)
  • Vlad Cojocaru (Wed Aug 22 2012 - 09:49:16 CDT)
  • John Stone (Wed Aug 22 2012 - 09:34:30 CDT)
  • Vlad Cojocaru (Wed Aug 22 2012 - 04:41:21 CDT)
  • John Stone (Tue Aug 21 2012 - 12:02:06 CDT)
  • Vlad Cojocaru (Tue Aug 21 2012 - 11:06:01 CDT)
• Error compiling 1.9.3 with CUDA
  • Vermaas, Joshua (Thu Jun 20 2019 - 17:21:51 CDT)
  • Weatherby,Gerard (Thu Jun 20 2019 - 15:18:43 CDT)
  • Vermaas, Joshua (Thu Jun 20 2019 - 14:40:07 CDT)
  • Weatherby,Gerard (Thu Jun 20 2019 - 12:54:53 CDT)
• Error compiling trio
  • John Stone (Wed Apr 09 2003 - 10:08:53 CDT)
  • Patrick Ladam (Wed Apr 09 2003 - 10:18:56 CDT)
• Error connecting to localhost on port 3000 and IMD connection ended unexpectedly; connection terminated.
  • jrhau lung (Thu Oct 27 2016 - 06:19:56 CDT)
  • jrhau lung (Thu Oct 27 2016 - 05:05:38 CDT)
• Error defining "clusters" in NetworkView?
  • Smith, Harper E. (Thu Mar 04 2021 - 18:18:26 CST)
• error during creat .psf file
  • John Stone (Wed Apr 05 2006 - 23:14:27 CDT)
  • John Stone (Wed Apr 05 2006 - 21:47:21 CDT)
  • Taeho Kim (Mon Apr 03 2006 - 03:16:01 CDT)
• error during membrane mixing: can't read "toplist": no such variable
  • Tvedt, Nathan (Fri Mar 29 2024 - 14:03:14 CDT)
• Error during minimizazion - Number of atoms in fixed atoms PDB...
  • Joao Ribeiro (Tue Jun 18 2019 - 09:38:50 CDT)
  • Alessandro Ruda (Mon Jun 17 2019 - 17:12:26 CDT)
• error during the Gaussian optimization of the Water interaction in fftk
  • Ghazaleh Zamani Maimian (Fri Nov 25 2016 - 03:25:42 CST)
• Error during Water interaction data generation using gaussian following ffTK screencast
  • Mayne, Christopher G (Wed Jul 10 2013 - 14:19:40 CDT)
  • Peterson J (Wed Jul 10 2013 - 12:03:45 CDT)
• Error Encountered in making vmdmovie
  • John Stone (Tue May 03 2005 - 09:59:45 CDT)
  • Adrian Koh (Tue May 03 2005 - 02:42:00 CDT)
• Error encountered when quitting VMD on the Mac
  • Ben Roberts (Wed Oct 13 2010 - 12:39:07 CDT)
  • Ben Roberts (Mon Sep 13 2010 - 21:12:37 CDT)
  • John Stone (Mon Sep 13 2010 - 20:08:36 CDT)
  • Ben Roberts (Mon Sep 13 2010 - 16:55:53 CDT)
• Error generating psf files
  • Peter Freddolino (Thu Sep 18 2008 - 22:45:03 CDT)
  • Nd S (Thu Sep 18 2008 - 22:30:05 CDT)
  • Nd S (Thu Sep 18 2008 - 22:05:07 CDT)
  • Peter Freddolino (Thu Sep 18 2008 - 22:14:25 CDT)
  • Peter Freddolino (Thu Sep 18 2008 - 20:18:14 CDT)
  • Nd S (Thu Sep 18 2008 - 18:55:28 CDT)
• Error in "measure fit"
  • John Stone (Thu Oct 16 2008 - 15:43:17 CDT)
  • Stephen Hicks (Sat Oct 11 2008 - 15:05:45 CDT)
• error in analyse fep simulation (parse fep)
  • soroush ziaei (Fri Oct 19 2018 - 08:54:44 CDT)
• Error in building a psf file for nanoparticle
  • Peter Freddolino (Tue Oct 13 2020 - 18:40:42 CDT)
  • Yuvam Bhateja (Sat Oct 10 2020 - 03:04:41 CDT)
• Error in changing on screen options of VMD
  • John Stone (Sun Jan 20 2008 - 22:54:33 CST)
  • Monika Sharma (Fri Jan 18 2008 - 07:45:07 CST)
• Error in charge optimization
  • Nibedita Ray Chaudhuri (Fri Nov 13 2020 - 00:54:16 CST)
  • Gumbart, JC (Thu Nov 12 2020 - 22:54:08 CST)
  • Nibedita Ray Chaudhuri (Thu Nov 12 2020 - 22:36:04 CST)
  • Gumbart, JC (Thu Nov 12 2020 - 15:46:45 CST)
  • Gumbart, JC (Wed Nov 11 2020 - 23:48:15 CST)
  • Nibedita Ray Chaudhuri (Fri Nov 06 2020 - 05:22:09 CST)
• Error in coordinate information of PDB file after merging
  • Axel Kohlmeyer (Wed Mar 02 2011 - 10:39:01 CST)
  • nabaneeta mukhopadhyay (Wed Mar 02 2011 - 00:50:42 CST)
• Error in disulfide bond identification in AutoPSF
  • Tristan Croll (Tue Jan 20 2015 - 23:15:12 CST)
• Error in FFTK charges optimization (Run Optimization)
  • Pang, Yui Tik (Sun Aug 28 2022 - 20:03:48 CDT)
  • Chenbo Yan (Sat Aug 20 2022 - 07:43:52 CDT)
  • Pang, Yui Tik (Fri Aug 19 2022 - 08:40:30 CDT)
  • Chenbo Yan (Thu Aug 18 2022 - 21:31:59 CDT)
• Error in fftk during bond opt using VMD 1.9.3
  • JC Gumbart (Mon Aug 17 2020 - 12:17:12 CDT)
  • Faisal, H M Nasrullah (Mon Aug 17 2020 - 10:08:37 CDT)
• Error in Linux
  • cheol_at_rccd.snu.ac.kr (Wed Apr 09 1997 - 05:51:13 CDT)
• Error in Loading atom_style hybrid LAMMPS data file in VMD
  • Axel Kohlmeyer (Mon Dec 17 2018 - 09:13:01 CST)
  • LIGESH B (Mon Dec 17 2018 - 08:27:34 CST)
• Error in loading large trajectories
  • John Stone (Sat Jan 12 2013 - 06:23:55 CST)
  • Jiawei Xu (Thu Jan 10 2013 - 17:26:53 CST)
  • Esam Tolba (Thu Jan 10 2013 - 15:56:15 CST)
• error in loading psf file generated from lammps data file.
  • John Stone (Sun Jan 20 2008 - 20:46:28 CST)
  • Dongsheng Zhang (Thu Jan 17 2008 - 16:23:27 CST)
• Error in merging manipulated graphene sheet (generate with VMD and manipulate with Hyperchem) with protein
  • v.satarifard (Sun Jul 28 2013 - 03:22:20 CDT)
• Error in merging two PDB files
  • Aishwarya Smriti (Mon Sep 18 2017 - 10:23:36 CDT)
  • John Stone (Mon Sep 18 2017 - 10:18:06 CDT)
  • Aishwarya Smriti (Sun Sep 17 2017 - 04:05:44 CDT)
  • Aishwarya Smriti (Sat Sep 16 2017 - 05:19:34 CDT)
• Error in merging two PSFs and PDBs using a TCL script
  • Sarthak Mohanty (Fri Dec 16 2022 - 11:59:06 CST)
• error in merging two structures
  • Anurag Sharma (Thu Jun 13 2013 - 17:26:59 CDT)
  • Anurag Sharma (Thu Jun 13 2013 - 12:24:09 CDT)
  • Anurag Sharma (Thu Jun 13 2013 - 12:18:17 CDT)
  • Bennion, Brian (Thu Jun 13 2013 - 12:25:34 CDT)
  • Subbarao Kanchi (Thu Jun 13 2013 - 11:24:21 CDT)
  • Bennion, Brian (Thu Jun 13 2013 - 10:32:34 CDT)
  • Anurag Sharma (Thu Jun 13 2013 - 09:21:43 CDT)
  • John Stone (Wed Jun 12 2013 - 23:19:30 CDT)
  • John Stone (Wed May 22 2013 - 10:24:02 CDT)
  • Anurag Sharma (Mon May 20 2013 - 12:38:18 CDT)
  • Anurag Sharma (Wed May 15 2013 - 18:38:58 CDT)
• Error in modifying and concatenating two pdb files into one [plz Help!]
  • John Stone (Mon Aug 02 2004 - 09:59:02 CDT)
  • Sekwan Oh (Fri Jul 30 2004 - 20:30:22 CDT)
• Error in Molefacture 2.0: Unable to write PSF and PDB files
  • Sarthak Mohanty (Mon Feb 26 2024 - 02:19:07 CST)
• error in movie generator
  • Phelan Jr, Frederick R. Dr. (Thu Jun 02 2011 - 08:44:38 CDT)
  • John Stone (Tue May 17 2011 - 10:11:16 CDT)
  • Esam Tolba (Tue May 17 2011 - 03:57:06 CDT)
  • Esam Tolba (Mon May 16 2011 - 10:01:27 CDT)
• Error in NAMD energy plugin of VMD
  • John Stone (Fri May 15 2015 - 11:24:28 CDT)
  • Debashis Kundu (Fri May 15 2015 - 08:40:45 CDT)
• Error in NAMD plot
  • John Stone (Mon Aug 31 2020 - 11:45:27 CDT)
• Error in PCA analysis
  • John Stone (Tue Jul 03 2018 - 11:46:14 CDT)
  • Aravind Ravichandran (Wed Jun 27 2018 - 05:26:18 CDT)
• Error in porcupine plot
  • Diego Gomes (Tue Sep 05 2023 - 13:55:55 CDT)
  • Sanjay Kumar Paul (Thu Aug 31 2023 - 04:06:46 CDT)
• Error in PSFGEN
  • Gianfranco Abrusci (Mon Oct 19 2020 - 15:43:46 CDT)
  • Bassam Haddad (Mon Oct 19 2020 - 15:45:28 CDT)
  • Gianfranco Abrusci (Mon Oct 19 2020 - 15:36:50 CDT)
  • Bassam Haddad (Mon Oct 19 2020 - 12:38:16 CDT)
  • Bassam Haddad (Wed Oct 14 2020 - 20:22:12 CDT)
  • Josh Vermaas (Wed Oct 14 2020 - 19:58:08 CDT)
  • Bassam Haddad (Wed Oct 14 2020 - 18:15:45 CDT)
• error in psfgen file
  • Marcos Sotomayor (Thu Mar 23 2006 - 22:13:15 CST)
  • Rima Chaudhuri (Thu Mar 23 2006 - 20:20:10 CST)
• Error in RATTLE algorithm
  • Stefan Franzen (Mon Nov 19 2012 - 15:38:05 CST)
• error in rbcg-2007.par file
  • Peter Freddolino (Fri Nov 27 2009 - 19:27:37 CST)
  • BIN ZHANG (Fri Nov 27 2009 - 13:15:01 CST)
• Error in reading data file
  • John Stone (Tue Oct 23 2012 - 11:52:06 CDT)
  • prakhar gupta (Tue Oct 23 2012 - 12:10:45 CDT)
  • Axel Kohlmeyer (Tue Oct 23 2012 - 10:08:15 CDT)
  • prakhar gupta (Tue Oct 23 2012 - 10:05:29 CDT)
  • Axel Kohlmeyer (Tue Oct 23 2012 - 09:56:49 CDT)
  • prakhar gupta (Tue Oct 23 2012 - 08:50:50 CDT)
• error in reading Gaussian log file
  • JC Gumbart (Wed Oct 21 2020 - 17:41:23 CDT)
  • Pawel Kedzierski (Wed Oct 14 2020 - 06:46:50 CDT)
  • JC Gumbart (Tue Oct 13 2020 - 18:03:50 CDT)
  • Lokendra Poudel (Tue Oct 13 2020 - 15:04:44 CDT)
  • Lokendra Poudel (Tue Oct 13 2020 - 14:15:39 CDT)
  • John Stone (Tue Oct 13 2020 - 14:25:04 CDT)
• error in rmsd.tcl for tutorial
  • TAE BUM LEE (Sun Dec 13 2009 - 12:23:03 CST)
  • John Stone (Fri Dec 11 2009 - 16:12:22 CST)
  • TAE BUM LEE (Thu Dec 10 2009 - 17:42:04 CST)
  • John Stone (Thu Dec 10 2009 - 10:28:16 CST)
  • TAE BUM LEE (Wed Dec 09 2009 - 16:37:42 CST)
• Error in running VMD on AMD64-bit machine (Fedora Core 4)
  • John Stone (Mon Dec 19 2005 - 16:54:21 CST)
  • Cheng, Kelvin (Mon Dec 19 2005 - 16:36:55 CST)
• Error in tcl script
  • Kiana Jahani (Mon Jan 24 2022 - 00:35:23 CST)
  • Peter Freddolino (Sun Jan 23 2022 - 09:41:25 CST)
  • Kiana Jahani (Sun Jan 23 2022 - 05:13:46 CST)
• error in the conversion of dcd to pdb files
  • Axel Kohlmeyer (Mon Jan 03 2011 - 04:58:45 CST)
  • Ramya Narasimhan (Sun Jan 02 2011 - 23:50:43 CST)
  • Axel Kohlmeyer (Fri Dec 31 2010 - 04:54:08 CST)
  • Ramya Narasimhan (Fri Dec 31 2010 - 04:11:06 CST)
• Error in visualizing the 5 prime end of DNA strand
  • Bob Johnson (Mon Aug 29 2005 - 10:56:06 CDT)
• Error installing VMD 1.8.5.
  • John Stone (Mon Oct 23 2006 - 12:13:35 CDT)
  • Lechuga, Javier (Mon Oct 23 2006 - 02:29:06 CDT)
• Error loading .cor files from CHARMM using dcd
  • John Stone (Wed Feb 04 2004 - 13:02:45 CST)
  • Tjaart de Beer (Fri Jan 30 2004 - 06:58:22 CST)
• Error loading .phi file
  • John Stone (Tue May 15 2018 - 14:53:22 CDT)
  • Andy Liu (Thu May 10 2018 - 19:03:43 CDT)
• error loading dcd
  • Abhishek TYAGI (Wed Mar 30 2016 - 04:14:05 CDT)
  • Ajasja LjubetiÄ� (Wed Mar 30 2016 - 02:45:46 CDT)
  • Stefano Guglielmo (Tue Mar 29 2016 - 17:48:41 CDT)
• error loading dcd file on Windows XP
  • Jindal Shah (Fri Mar 17 2006 - 16:36:58 CST)
  • John Stone (Fri Mar 17 2006 - 16:28:17 CST)
  • Jindal Shah (Thu Mar 16 2006 - 18:44:30 CST)
  • John Stone (Thu Mar 16 2006 - 15:30:43 CST)
  • Jindal Shah (Thu Mar 16 2006 - 15:18:24 CST)
• error loading PDB
  • Anna Lohning (Tue Nov 22 2016 - 18:33:21 CST)
  • Ashar Malik (Tue Nov 22 2016 - 18:13:11 CST)
  • Anna Lohning (Tue Nov 22 2016 - 17:44:03 CST)
  • John Stone (Tue Nov 22 2016 - 17:36:08 CST)
  • John Stone (Tue Nov 22 2016 - 17:33:14 CST)
  • Anna Lohning (Tue Nov 22 2016 - 00:56:00 CST)
• error loading pdb files
  • John Stone (Tue Jan 24 2006 - 11:13:39 CST)
  • John Stone (Tue Jan 24 2006 - 10:09:12 CST)
  • Dean Appling (Tue Jan 24 2006 - 08:59:08 CST)
• Error merging the pdbs and psfs
  • John Stone (Mon Mar 05 2018 - 14:51:53 CST)
  • Denish Poudyal (Mon Feb 26 2018 - 20:26:08 CST)
• Error message -" cannot find NAMD binary files" during parameterization using FFTK plugin.
  • Him Bandhu Upadhyay (Thu Oct 11 2012 - 15:02:16 CDT)
  • Mayne, Christopher G (Thu Oct 11 2012 - 14:55:38 CDT)
  • Him Bandhu Upadhyay (Thu Oct 11 2012 - 14:43:10 CDT)
  • Mayne, Christopher G (Thu Oct 11 2012 - 13:09:21 CDT)
  • Him Bandhu Upadhyay (Thu Oct 11 2012 - 12:41:59 CDT)
• Error message disappears before I can read it!
  • Robert Coridan (Thu Jun 02 2005 - 13:51:29 CDT)
  • John Stone (Thu Jun 02 2005 - 12:56:48 CDT)
  • Robert Coridan (Thu Jun 02 2005 - 11:21:35 CDT)
• error message from IED
  • John Stone (Wed Mar 02 2005 - 10:02:54 CST)
  • Vlad Cojocaru (Wed Mar 02 2005 - 08:55:06 CST)
• Error message in VMD console when I try to switch to Python mode.
  • Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
  • John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
  • Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
  • Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
  • John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
  • Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
  • John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
  • Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
  • John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
• error message MultiSeq - sequence alignement
  • John Stone (Wed Jan 13 2016 - 13:31:48 CST)
  • Marie Erard (Tue Jan 05 2016 - 15:52:06 CST)
• error message occurred in RMSD Trajectory Tool
  • Margaret Shun Cheung (Thu Jun 22 2006 - 14:56:36 CDT)
  • John Stone (Thu Jun 22 2006 - 14:36:46 CDT)
  • John Stone (Thu Jun 22 2006 - 13:53:37 CDT)
  • Margaret Shun Cheung (Thu Jun 22 2006 - 11:28:10 CDT)
• error message using gofr
  • OMAR NABEEL ALY DEMERDASH (Mon Jan 08 2007 - 15:17:42 CST)
  • John Stone (Mon Jan 08 2007 - 11:29:56 CST)
  • Axel Kohlmeyer (Fri Jan 05 2007 - 18:09:22 CST)
  • OMAR NABEEL ALY DEMERDASH (Fri Jan 05 2007 - 16:03:12 CST)
• error messages "*** glibc detected *** free(): invalid pointer"
  • Yinglong Miao (Wed Feb 18 2009 - 17:32:26 CST)
  • John Stone (Wed Feb 18 2009 - 17:43:14 CST)
  • John Stone (Wed Feb 18 2009 - 09:44:02 CST)
  • John Stone (Mon Feb 16 2009 - 13:14:31 CST)
  • Axel Kohlmeyer (Mon Feb 16 2009 - 12:26:19 CST)
  • Yinglong Miao (Mon Feb 16 2009 - 12:44:16 CST)
  • Yinglong Miao (Mon Feb 16 2009 - 12:10:11 CST)
  • Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
  • John Stone (Mon Feb 16 2009 - 11:43:44 CST)
  • John Stone (Mon Feb 16 2009 - 11:54:45 CST)
  • Yinglong Miao (Mon Feb 16 2009 - 11:23:32 CST)
• Error of NAMD simulation when the structure including azide
  • Chia-Ju Hsieh (Fri Sep 16 2016 - 15:03:43 CDT)
  • Vermaas, Joshua (Thu Sep 15 2016 - 11:23:17 CDT)
  • Chia-Ju Hsieh (Thu Sep 15 2016 - 10:15:34 CDT)
• Error on DNA
  • Mario Valle (Wed Oct 04 2006 - 00:31:50 CDT)
  • John Stone (Tue Oct 03 2006 - 23:52:24 CDT)
  • Mario Valle (Mon Oct 02 2006 - 02:59:08 CDT)
• Error on fftk while optimizing bonded parameters
  • Hyunjin Kim (Mon May 04 2015 - 13:49:06 CDT)
  • Mayne, Christopher G (Mon May 04 2015 - 12:48:25 CDT)
  • Hyunjin Kim (Mon May 04 2015 - 11:37:38 CDT)
  • Mayne, Christopher G (Mon May 04 2015 - 11:27:06 CDT)
  • Mayne, Christopher G (Mon May 04 2015 - 09:07:09 CDT)
  • Hyunjin Kim (Sun May 03 2015 - 02:55:11 CDT)
• Error on VMD Tkconsole : syntax error near unexpected token
  • Yixin Chen (Fri Nov 03 2023 - 05:11:19 CDT)
  • Josh (Thu Nov 02 2023 - 15:36:48 CDT)
  • Yixin Chen (Tue Oct 31 2023 - 10:55:22 CDT)
• error processing angles
  • John Stone (Mon Apr 26 2010 - 19:30:05 CDT)
  • Robert Brunner (Mon Apr 26 2010 - 19:12:07 CDT)
  • muniyamuthu.raviprasad_at_ndsu.edu (Mon Apr 26 2010 - 18:57:55 CDT)
  • Robert Brunner (Mon Apr 26 2010 - 18:32:44 CDT)
  • muniyamuthu.raviprasad_at_ndsu.edu (Fri Apr 23 2010 - 17:36:32 CDT)
• Error processing bonds
  • Gianluca Interlandi (Fri Apr 24 2009 - 14:09:59 CDT)
  • Gianluca Interlandi (Fri Apr 24 2009 - 11:12:31 CDT)
  • Gianluca Interlandi (Fri Apr 24 2009 - 10:15:38 CDT)
  • Axel Kohlmeyer (Fri Apr 24 2009 - 08:42:34 CDT)
  • John Stone (Fri Apr 24 2009 - 08:03:21 CDT)
  • Gianluca Interlandi (Fri Apr 24 2009 - 01:41:07 CDT)
• Error psfgen
  • Surendra Negi (Thu Oct 28 2004 - 20:07:14 CDT)
• error python
  • John Stone (Mon Sep 13 2004 - 10:02:20 CDT)
  • effekri_at_infinito.it (Mon Sep 13 2004 - 02:18:25 CDT)
• Error Qbug=3F=29=20with=20Simulated=20anne?= aling in FFTK-Bond/Angle opt
  • Yasser Almeida-Hernandez (Thu Aug 06 2020 - 10:52:46 CDT)
  • Yasser Almeida-Hernandez (Thu Aug 06 2020 - 01:36:32 CDT)
• Error Qbug=3F=29=20with=20Simulated=20annealing=20in?= QFFTK-Bond/Angle=20opt?=
  • Yasser Almeida-Hernandez (Tue Aug 04 2020 - 05:17:06 CDT)
• Error reading fep.tcl file in namd
  • SYEDA SABIHA SULTANA LUBNA . (Sat Oct 30 2021 - 01:58:38 CDT)
  • John Stone (Fri Oct 29 2021 - 10:25:00 CDT)
  • SYEDA SABIHA SULTANA LUBNA . (Fri Oct 29 2021 - 06:52:39 CDT)
• Error running IED
  • Manish (Tue Oct 18 2011 - 14:33:15 CDT)
  • Manish (Tue Oct 18 2011 - 13:39:09 CDT)
• Error running IED with VMD
  • Axel Kohlmeyer (Fri Oct 14 2011 - 10:09:16 CDT)
  • Manish (Fri Oct 14 2011 - 08:47:17 CDT)
• Error Running NAMD
  • Danu Fajar (Thu Mar 02 2017 - 08:54:48 CST)
  • João Ribeiro KS (Tue Feb 28 2017 - 07:56:40 CST)
  • Danu Fajar (Sun Feb 26 2017 - 10:50:23 CST)
  • João Ribeiro KS (Thu Feb 23 2017 - 11:52:13 CST)
  • Danu Fajar (Sat Feb 11 2017 - 12:03:17 CST)
  • João Ribeiro KS (Fri Feb 10 2017 - 13:42:33 CST)
  • Danu Fajar (Fri Feb 10 2017 - 13:31:38 CST)
  • João Ribeiro KS (Fri Feb 10 2017 - 09:52:29 CST)
  • João Ribeiro KS (Fri Feb 10 2017 - 07:23:23 CST)
  • Danu Fajar (Thu Feb 09 2017 - 22:53:46 CST)
• Error saying "too many open files"
  • Ashar Malik (Mon Apr 20 2015 - 02:33:57 CDT)
  • Monika Madhavi (Mon Apr 20 2015 - 01:56:32 CDT)
  • Ashar Malik (Mon Apr 20 2015 - 01:56:39 CDT)
  • John Stone (Mon Apr 20 2015 - 01:45:18 CDT)
  • Monika Madhavi (Mon Apr 20 2015 - 01:29:34 CDT)
• Error starting second VMD
  • John Stone (Tue Apr 19 2011 - 22:26:56 CDT)
  • Jérôme Hénin (Mon Mar 28 2011 - 17:33:59 CDT)
  • John Stone (Mon Mar 28 2011 - 16:04:34 CDT)
  • Jérôme Hénin (Fri Mar 25 2011 - 09:19:59 CDT)
  • John Stone (Fri Mar 25 2011 - 09:05:39 CDT)
  • Jérôme Hénin (Fri Mar 25 2011 - 04:40:04 CDT)
  • John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
  • Jérôme Hénin (Wed Mar 23 2011 - 09:40:20 CDT)
• Error tachyon rendering Mac Catalina
  • John Stone (Wed Dec 02 2020 - 01:03:32 CST)
  • fabio trovato (Sat Nov 28 2020 - 19:22:27 CST)
• error using Molecule.save() (vmd python)
  • Axel Kohlmeyer (Tue Jul 21 2009 - 08:43:21 CDT)
  • Michael Kreim (Tue Jul 21 2009 - 06:49:44 CDT)
• error using Namdenergy
  • John Stone (Thu Jun 22 2006 - 15:06:12 CDT)
  • Peter Freddolino (Wed Jun 21 2006 - 20:15:21 CDT)
  • Chandra Ramananjara (Wed Jun 21 2006 - 19:55:01 CDT)
  • Chandra Ramananjara (Wed Jun 21 2006 - 21:17:13 CDT)
  • Peter Freddolino (Wed Jun 21 2006 - 17:17:17 CDT)
  • Chandra Ramananjara (Wed Jun 21 2006 - 15:04:19 CDT)
• Error using namdstat.tcl script
  • S.K. Ghosh (Mon Jun 30 2008 - 10:51:20 CDT)
  • Axel Kohlmeyer (Mon Jun 30 2008 - 11:42:26 CDT)
• Error using psfgen "unknown residue type SOD"
  • Vermaas, Joshua (Wed Nov 01 2017 - 11:45:04 CDT)
  • Charles Hoying (Wed Nov 01 2017 - 04:59:23 CDT)
• Error vmd and Nvidia Graphik Card
  • John Stone (Tue Mar 09 2010 - 10:37:25 CST)
  • Christian Wohlschlager (Tue Mar 09 2010 - 10:19:47 CST)
• Error when compiling Plugins from source code
  • John Stone (Thu Jan 25 2007 - 14:49:56 CST)
  • Epiphaniou, Nicholas (Thu Jan 25 2007 - 04:57:09 CST)
• Error when compiling plugins: tcl.h not found
  • Daniel Lévesque (Tue May 14 2013 - 13:51:46 CDT)
  • John Stone (Tue May 14 2013 - 13:09:19 CDT)
  • Josh Vermaas (Tue May 14 2013 - 12:38:42 CDT)
  • Axel Kohlmeyer (Tue May 14 2013 - 12:48:29 CDT)
  • Daniel Lévesque (Tue May 14 2013 - 11:37:47 CDT)
• Error when find salt bridges
  • EGIDEA PUTI DEVINA (Tue Apr 25 2017 - 22:02:16 CDT)
• Error when loading log files into ffTK Torsion Explorer
  • Mayne, Christopher G (Thu Oct 20 2016 - 11:54:10 CDT)
  • david kastner (Tue Oct 11 2016 - 22:42:49 CDT)
  • Mayne, Christopher G (Tue Oct 11 2016 - 08:51:45 CDT)
  • david kastner (Mon Oct 10 2016 - 22:52:59 CDT)
• error when making a movie
  • John Stone (Wed Aug 06 2003 - 10:38:57 CDT)
  • Ioana Cozmuta (Wed Aug 06 2003 - 00:53:22 CDT)
  • John Stone (Tue Aug 05 2003 - 23:00:52 CDT)
  • Ioana Cozmuta (Tue Aug 05 2003 - 22:32:21 CDT)
  • John Stone (Tue Aug 05 2003 - 21:59:45 CDT)
  • Ioana Cozmuta (Tue Aug 05 2003 - 18:04:15 CDT)
• Error when opening the VMD.exe (Window 8)
  • Thiau Fu Ang (Wed Nov 27 2013 - 01:36:58 CST)
  • John Stone (Fri Nov 22 2013 - 23:35:36 CST)
  • Thiau Fu Ang (Fri Nov 15 2013 - 23:43:51 CST)
  • John Stone (Fri Nov 15 2013 - 17:24:43 CST)
  • Thiau Fu Ang (Thu Nov 14 2013 - 22:51:06 CST)
• Error when running ied.py
  • Joseph Fernandez (Fri Jul 08 2005 - 09:50:59 CDT)
• error when solvating a system
  • L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:49:27 CDT)
• error when solvating protein/vmd1.8.4a22
  • John Stone (Tue Nov 08 2005 - 15:24:57 CST)
  • amodzelewska_at_iimcb.gov.pl (Tue Nov 08 2005 - 08:44:30 CST)
  • John Stone (Tue Nov 08 2005 - 10:00:58 CST)
  • Anna Modzelewska (Mon Nov 07 2005 - 07:31:59 CST)
• Error when using orient command
  • John Stone (Wed Sep 07 2016 - 11:32:32 CDT)
  • #YEO JINGJIE# (Wed Aug 31 2016 - 16:46:17 CDT)
• Error while calculating rotational angle
  • Josh Vermaas (Fri Oct 10 2014 - 08:19:20 CDT)
  • Tristan Croll (Fri Oct 10 2014 - 00:38:50 CDT)
  • Aiswarya Pawar (Thu Oct 09 2014 - 22:51:41 CDT)
  • Josh Vermaas (Thu Oct 09 2014 - 15:31:13 CDT)
  • Bennion, Brian (Thu Oct 09 2014 - 15:09:58 CDT)
  • Aiswarya (Thu Oct 09 2014 - 13:32:55 CDT)
• Error while compiling vmd: "libmolfile_plugin.h"
  • Vermaas, Josh (Thu Apr 15 2021 - 13:47:19 CDT)
  • Chintapalli, Sree vamsee (Thu Apr 15 2021 - 12:08:04 CDT)
• error while generating a tetramer using transformation matrix
  • Himanshu Khandelia (Wed Jun 27 2007 - 04:00:50 CDT)
  • Ruchi Sachdeva (Wed Jun 27 2007 - 01:15:28 CDT)
• error while loading shared libraries: libcudart.so.4
  • MichaÅ‚ Kadlof (Wed Dec 05 2012 - 19:25:26 CST)
• error while loading shared libraries: libGLU.so.1
  • Cheri M Turman (Tue Oct 26 2004 - 15:12:07 CDT)
  • John Stone (Tue Oct 26 2004 - 13:43:49 CDT)
  • Cheri M Turman (Tue Oct 26 2004 - 13:37:56 CDT)
  • John Stone (Tue Oct 26 2004 - 12:38:06 CDT)
  • Cheri M Turman (Tue Oct 26 2004 - 12:21:29 CDT)
  • John Stone (Thu Oct 21 2004 - 15:20:33 CDT)
  • Cheri M Turman (Thu Oct 21 2004 - 14:27:46 CDT)
  • John Stone (Thu Oct 21 2004 - 13:35:23 CDT)
  • Cheri M Turman (Thu Oct 21 2004 - 13:24:12 CDT)
• Error while making th trajectory movie
  • Nancy Singh (Tue Jul 20 2021 - 10:26:47 CDT)
• Error while merging structures
  • Axel Kohlmeyer (Sun May 24 2015 - 07:36:55 CDT)
  • Sanghamitra Debroy (Sun May 24 2015 - 07:18:42 CDT)
  • Axel Kohlmeyer (Sun May 24 2015 - 03:58:34 CDT)
  • Sanghamitra Debroy (Sat May 23 2015 - 04:10:08 CDT)
• Error while opening dump file
  • M K (Tue Nov 17 2015 - 20:18:05 CST)
  • Dive, Aniruddha Mukund (Tue Nov 17 2015 - 19:05:10 CST)
• Error while running NAMD after using patch in psfgen
  • Ganesh Kamath (Wed Aug 22 2012 - 15:16:14 CDT)
• Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc'
  • Arneh Babakhani (Mon Feb 05 2007 - 10:59:04 CST)
  • John Stone (Mon Feb 05 2007 - 10:04:31 CST)
  • Arneh Babakhani (Sun Feb 04 2007 - 21:58:19 CST)
  • Axel Kohlmeyer (Sat Feb 03 2007 - 06:31:49 CST)
  • John Stone (Sat Feb 03 2007 - 00:45:58 CST)
  • Arneh Babakhani (Fri Feb 02 2007 - 20:04:29 CST)
  • John Stone (Fri Feb 02 2007 - 16:21:44 CST)
  • Arneh Babakhani (Fri Feb 02 2007 - 16:16:04 CST)
• Error while running steered MD script
  • Ban Arn (Fri Feb 03 2012 - 03:07:34 CST)
  • John Stone (Thu Feb 02 2012 - 18:18:20 CST)
  • Ban Arn (Thu Feb 02 2012 - 17:29:02 CST)
  • John Stone (Thu Feb 02 2012 - 17:10:01 CST)
  • Ban Arn (Thu Feb 02 2012 - 10:24:18 CST)
• error while trying to run the first tutorial for NAMD using VMD
  • Mochena, Mogus D. (Wed Mar 09 2016 - 11:59:13 CST)
• Error while using Alanine Scanning Plugin
  • amin sagar (Fri Sep 01 2017 - 08:33:17 CDT)
  • João Ribeiro (Fri Sep 01 2017 - 08:19:06 CDT)
  • João Ribeiro (Thu Aug 31 2017 - 09:57:41 CDT)
  • amin sagar (Thu Aug 31 2017 - 01:28:35 CDT)
  • JC Gumbart (Tue Aug 29 2017 - 19:40:47 CDT)
  • amin sagar (Tue Aug 29 2017 - 08:37:47 CDT)
• ERROR while using PSF builder
  • John Stone (Mon Feb 07 2011 - 20:25:33 CST)
  • vani panguluri (Mon Feb 07 2011 - 11:29:09 CST)
• Error with CaFE VMD Plugin
  • Efthymiou, Christos (Thu Jul 14 2022 - 12:19:20 CDT)
  • John Stone (Tue Jul 05 2022 - 23:29:15 CDT)
  • Efthymiou, Christos (Fri Jun 17 2022 - 06:22:28 CDT)
  • Jason Smith (Thu Jun 16 2022 - 10:50:03 CDT)
  • John Stone (Thu Jun 16 2022 - 09:39:35 CDT)
  • Ashar Malik (Thu Jun 16 2022 - 06:32:12 CDT)
  • Efthymiou, Christos (Thu Jun 16 2022 - 05:30:17 CDT)
• Error with Catdcd
  • Victor Kwan (Wed Mar 08 2023 - 02:18:40 CST)
  • Efthymiou, Christos (Tue Mar 07 2023 - 16:47:47 CST)
• Error with initiation of additional production simulation using Qwikmd
  • jrhau lung (Thu Jul 30 2020 - 18:44:45 CDT)
  • Josh Vermaas (Thu Jul 30 2020 - 16:33:10 CDT)
  • Peter Freddolino (Thu Jul 30 2020 - 10:02:09 CDT)
  • jrhau lung (Thu Jul 30 2020 - 06:48:11 CDT)
  • jrhau lung (Mon Jul 27 2020 - 04:19:54 CDT)
• error with make movie
  • mohammad rezaei (Tue May 05 2020 - 04:14:29 CDT)
  • Dallas Warren (Mon May 04 2020 - 17:55:59 CDT)
  • mohammad rezaei (Mon May 04 2020 - 05:54:47 CDT)
• Error with NAMD Energy
  • JC Gumbart (Thu Mar 28 2013 - 18:27:44 CDT)
  • Josh Vermaas (Thu Mar 28 2013 - 17:19:01 CDT)
  • Anurag Sharma (Thu Mar 28 2013 - 17:06:58 CDT)
  • Josh Vermaas (Thu Mar 28 2013 - 16:57:04 CDT)
  • Anurag Sharma (Thu Mar 28 2013 - 15:25:11 CDT)
• Error with PCA Calculation using Normal Mode Wizard
  • Efthymiou, Christos (Tue Nov 08 2022 - 12:06:45 CST)
• Error with RESP in ffTK
  • Gumbart, JC (Wed Dec 30 2020 - 18:25:03 CST)
  • Emma Wu (Wed Dec 30 2020 - 17:52:56 CST)
  • Gumbart, JC (Mon Dec 28 2020 - 20:39:05 CST)
  • Gumbart, JC (Mon Dec 28 2020 - 00:20:51 CST)
  • Emma Wu (Sun Dec 27 2020 - 22:00:35 CST)
• Error with show_replicas.vmd
  • John Stone (Tue Sep 03 2013 - 10:57:26 CDT)
  • Francesco Pietra (Tue Sep 03 2013 - 04:44:55 CDT)
• Error with stride
  • John Stone (Tue Oct 16 2007 - 09:27:10 CDT)
  • Per Jr. Greisen (Tue Oct 16 2007 - 09:01:21 CDT)
• error with top2psf
  • Marc Baaden (Thu Apr 22 2004 - 02:52:23 CDT)
  • Axel Kohlmeyer (Wed Apr 21 2004 - 15:47:17 CDT)
  • John Stone (Wed Apr 21 2004 - 13:40:22 CDT)
  • davide\.ruffoni (Wed Apr 21 2004 - 06:04:51 CDT)
• error with tutorial beginer required help
  • Nikhil Maroli (Fri Sep 18 2015 - 02:42:58 CDT)
• ERROR) Error reading bond information.
  • Axel Kohlmeyer (Fri Sep 25 2009 - 12:16:30 CDT)
  • Luca Gelisio (Fri Sep 25 2009 - 11:55:11 CDT)
  • John Stone (Fri Sep 25 2009 - 11:03:47 CDT)
  • Axel Kohlmeyer (Fri Sep 25 2009 - 10:02:52 CDT)
  • Luca Gelisio (Fri Sep 25 2009 - 09:25:55 CDT)
  • Axel Kohlmeyer (Fri Sep 25 2009 - 09:11:49 CDT)
  • Luca Gelisio (Fri Sep 25 2009 - 09:10:23 CDT)
  • Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
  • Axel Kohlmeyer (Fri Sep 25 2009 - 07:55:47 CDT)
  • John Stone (Fri Sep 25 2009 - 07:41:11 CDT)
  • Luca Gelisio (Fri Sep 25 2009 - 05:40:17 CDT)
• ERROR) Failed to create Surf atom radii input file
  • John Stone (Wed Dec 29 2004 - 18:14:08 CST)
  • dieter blaas (Wed Dec 29 2004 - 02:42:54 CST)
  • Brian Bennion (Tue Dec 28 2004 - 11:16:46 CST)
  • John Stone (Tue Dec 28 2004 - 10:46:02 CST)
  • Axel Kohlmeyer (Tue Dec 28 2004 - 10:14:27 CST)
  • dieter blaas (Tue Dec 28 2004 - 10:02:40 CST)
  • Axel Kohlmeyer (Tue Dec 28 2004 - 08:37:37 CST)
  • dieter blaas (Tue Dec 28 2004 - 04:14:50 CST)
• ERROR) measure gofr: bad frame range given. max
  • Axel Kohlmeyer (Mon Jan 23 2012 - 16:25:37 CST)
  • jeela keel (Mon Jan 23 2012 - 15:06:10 CST)
  • Axel Kohlmeyer (Mon Jan 23 2012 - 14:13:02 CST)
  • Axel Kohlmeyer (Mon Jan 23 2012 - 12:51:41 CST)
  • jeela keel (Mon Jan 23 2012 - 12:55:54 CST)
  • jeela keel (Mon Jan 23 2012 - 12:45:22 CST)
  • Axel Kohlmeyer (Mon Jan 23 2012 - 11:53:04 CST)
  • Axel Kohlmeyer (Mon Jan 23 2012 - 11:55:22 CST)
  • jeela keel (Mon Jan 23 2012 - 11:35:59 CST)
  • jeela keel (Mon Jan 23 2012 - 11:18:04 CST)
  • John Stone (Mon Jan 23 2012 - 10:01:36 CST)
  • jeela keel (Mon Jan 23 2012 - 09:56:43 CST)
  • Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
  • jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
  • jeela keel (Fri Jan 20 2012 - 14:43:13 CST)
• ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories:
  • John Stone (Wed Feb 15 2012 - 10:08:38 CST)
  • Urszula Uciechowska (Wed Feb 15 2012 - 07:59:30 CST)
  • Urszula Uciechowska (Wed Feb 15 2012 - 01:48:52 CST)
• ERROR) Unable to change color name
  • Teich-McGoldrick, Stephanie (Fri Sep 14 2012 - 20:01:04 CDT)
  • John Stone (Fri Sep 14 2012 - 17:44:44 CDT)
  • Teich-McGoldrick, Stephanie (Fri Sep 14 2012 - 16:51:36 CDT)
  • Teich-McGoldrick, Stephanie (Fri Sep 14 2012 - 16:40:04 CDT)
  • John Stone (Fri Sep 14 2012 - 16:46:10 CDT)
• Error, Tk option requires Tcl
  • John Stone (Fri Nov 11 2005 - 13:55:05 CST)
  • zhurx (Fri Nov 11 2005 - 00:14:00 CST)
• Error- Periodic cell
  • Axel Kohlmeyer (Thu Jul 02 2015 - 11:11:06 CDT)
  • Ashar Malik (Thu Jul 02 2015 - 11:13:29 CDT)
  • Jinasena Hewage (Thu Jul 02 2015 - 10:48:18 CDT)
• error. Autoimd
  • John Stone (Thu Jun 01 2006 - 12:46:38 CDT)
  • Juan de Dios Lopez Castro (Thu Jun 01 2006 - 05:21:51 CDT)
• error: can't read "w" no such variable.
  • yjcoshc (Wed Jun 10 2020 - 17:08:56 CDT)
  • æ�Žå�‰å¼˜ (Wed Jun 10 2020 - 08:16:23 CDT)
• Error: failed on end of segment with RBCG
  • Peter Freddolino (Sun Nov 15 2009 - 08:46:47 CST)
  • Francesco Pietra (Sun Nov 15 2009 - 03:18:57 CST)
• ERROR: graphics: color index value '1057' out of range
  • Jervis Chu (Sun Feb 27 2011 - 08:41:00 CST)
• Error: invalid command name "voltool"
  • John Stone (Tue Feb 19 2019 - 13:33:12 CST)
  • Vermaas, Joshua (Tue Feb 19 2019 - 12:35:31 CST)
  • Ryan McGreevy (Tue Feb 19 2019 - 10:57:35 CST)
  • Ashar Malik (Tue Feb 19 2019 - 11:14:49 CST)
  • Montserrat Fabrega Ferrer (Tue Feb 19 2019 - 10:40:59 CST)
• Error: Maximum number of bonds exceeded
  • Orsolya Karácsony (Sat Sep 07 2013 - 13:30:21 CDT)
• Error: not possible to build nodeSelString: () and ()
  • Sophie Mader (Tue Jun 26 2018 - 04:27:04 CDT)
• error: too many open files
  • Ludovic (Tue Jun 18 2013 - 09:31:14 CDT)
  • Axel Kohlmeyer (Wed Jun 12 2013 - 21:22:53 CDT)
  • John Stone (Wed Jun 12 2013 - 21:03:55 CDT)
  • Ludovic (Wed Jun 12 2013 - 19:14:35 CDT)
• ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry
  • Joel Subach (Fri Oct 13 2023 - 06:46:37 CDT)
  • Joel Subach (Wed Oct 11 2023 - 09:05:22 CDT)
• Error: vecscale: parameters must have data
  • JC Gumbart (Fri May 18 2018 - 09:51:53 CDT)
  • JC Gumbart (Fri May 11 2018 - 17:56:00 CDT)
  • dalpizar_at_fbio.uh.cu (Fri May 11 2018 - 15:17:11 CDT)
• Errors at Charge Opt. (Charge-2 step from FFTK Screencast)
  • Minh Ho (Wed Oct 07 2020 - 10:22:21 CDT)
  • Minh Ho (Wed Oct 07 2020 - 10:12:38 CDT)
  • John Stone (Tue Oct 06 2020 - 10:36:39 CDT)
  • Daniel Fellner (Fri Oct 02 2020 - 18:39:32 CDT)
  • Minh Ho (Fri Oct 02 2020 - 18:44:37 CDT)
  • Minh Ho (Fri Oct 02 2020 - 18:29:40 CDT)
• Errors compiling VMD on 1.8.3 on Solaris x86
  • John Stone (Fri Apr 01 2005 - 18:20:20 CST)
  • John Stone (Fri Apr 01 2005 - 18:10:36 CST)
  • Koo Kee Kiat (Fri Apr 01 2005 - 00:17:45 CST)
• Errors in display
  • yunshi11 . (Mon Oct 26 2015 - 00:19:59 CDT)
• Errors in exporting average structure to a .pdb file
  • Francesco Pietra (Tue Jul 20 2021 - 11:28:24 CDT)
• Errors in FFTK during bond opt using VMD 1.9.4a37
  • #YEO JINGJIE# (Wed Sep 18 2019 - 20:23:54 CDT)
  • mariano spivak (Tue Sep 17 2019 - 11:01:25 CDT)
  • mariano spivak (Tue Sep 10 2019 - 16:05:34 CDT)
  • #YEO JINGJIE# (Mon Sep 09 2019 - 20:08:27 CDT)
  • mariano spivak (Mon Sep 09 2019 - 13:34:33 CDT)
  • #YEO JINGJIE# (Mon Sep 09 2019 - 02:17:54 CDT)
• errors starting vmd 1.9.3
  • Robert Wohlhueter (Sun Jun 04 2017 - 12:44:43 CDT)
• Errors using 'replicateCrystal.tcl' tutorial script
  • John Stone (Fri May 06 2022 - 00:11:44 CDT)
  • Linda Ravazzano (Tue Apr 26 2022 - 09:10:39 CDT)
• errors with using surf and MSMS representations
  • Yinglong Miao (Tue May 27 2008 - 17:11:54 CDT)
  • John Stone (Tue May 27 2008 - 16:13:41 CDT)
  • John Stone (Tue May 27 2008 - 15:12:35 CDT)
  • Yinglong Miao (Tue May 27 2008 - 14:53:54 CDT)
• ESPResSo Summer School
  • Olaf Lenz (Mon Aug 06 2012 - 09:10:22 CDT)
• essential dynamics visualization in VMD
  • Vlad Cojocaru (Thu Oct 30 2014 - 09:15:20 CDT)
  • John Stone (Thu Oct 30 2014 - 08:41:05 CDT)
  • Vlad Cojocaru (Thu Oct 30 2014 - 04:38:51 CDT)
• ethanol solvation box
  • Raisa Carmen Andeme Ela (Thu Apr 15 2021 - 13:37:45 CDT)
  • Raisa Carmen Andeme Ela (Wed Apr 14 2021 - 19:31:56 CDT)
  • Vermaas, Josh (Wed Apr 14 2021 - 19:38:18 CDT)
  • Vermaas, Josh (Wed Apr 14 2021 - 18:35:05 CDT)
• eTimeBanker Bill Pay Service
  • Bankf of the West (Wed Aug 24 2005 - 11:02:50 CDT)
• Etiquette, please.
  • Ivan Gregoretti (Mon Sep 08 2014 - 10:17:21 CDT)
  • Ivan Gregoretti (Mon Sep 08 2014 - 07:58:34 CDT)
• euler angles
  • John Stone (Wed Mar 22 2006 - 13:30:55 CST)
  • pinisetty dinesh (Tue Mar 21 2006 - 19:07:47 CST)
• Euro QSAR 2004
  • Ahmet Bakan (Sun Sep 05 2004 - 15:42:27 CDT)
• everything grey with glsl
  • Gordon Wells (Sat Aug 10 2013 - 14:08:40 CDT)
  • Axel Kohlmeyer (Sat Aug 10 2013 - 13:57:18 CDT)
  • Gordon Wells (Sat Aug 10 2013 - 12:39:42 CDT)
• exact number of solvent molecule in simulation box
  • Ashar Malik (Tue Nov 15 2016 - 09:10:39 CST)
  • Ashar Malik (Tue Nov 15 2016 - 09:07:20 CST)
  • Raviteja Kurapati (Tue Nov 15 2016 - 08:20:00 CST)
• Exactly align view direction to coordinate axes
  • Zhang, Dansong (Wed Jun 29 2016 - 10:45:15 CDT)
• Example tutorial
  • snoze pa (Mon Apr 14 2008 - 18:38:03 CDT)
• Exceeded maximum number of bonds
  • Axel Kohlmeyer (Thu May 29 2008 - 13:54:24 CDT)
  • Demian Riccardi (Thu May 29 2008 - 13:18:09 CDT)
• Exceeded maximum number of bonds (8)
  • John Stone (Sun Mar 31 2002 - 16:38:11 CST)
  • Lu Yang (Sun Mar 31 2002 - 13:19:55 CST)
• exclude residues
  • Wei Chen (Thu Jun 30 2005 - 16:39:51 CDT)
  • Axel Kohlmeyer (Thu Jun 30 2005 - 15:54:32 CDT)
  • John Stone (Thu Jun 30 2005 - 13:40:35 CDT)
  • John (Thu Jun 30 2005 - 11:42:09 CDT)
• excluding atoms
  • Ashar Malik (Sat Apr 28 2018 - 08:12:45 CDT)
  • Doaa Saayed (Sat Apr 28 2018 - 05:29:58 CDT)
• Executing ORCA within ffTK Opt Geometry Tab Inquiry
  • Joel Subach (Tue Apr 18 2023 - 11:41:35 CDT)
  • Joel Subach (Tue Apr 18 2023 - 07:53:13 CDT)
• Exelent quality watch
  • Landon Beaver (Wed Oct 17 2007 - 17:56:35 CDT)
• Exocyclic dihedral
  • MD Simulation (Mon Nov 20 2017 - 12:13:22 CST)
• experience using VMD with 3-D printers?
  • Karsten Suhre (Tue Feb 10 2004 - 06:50:59 CST)
  • John Stone (Mon Feb 09 2004 - 10:49:31 CST)
  • Karsten Suhre (Mon Feb 09 2004 - 08:30:25 CST)
• Experience with Asus Netbook
  • TRINH Minh Hieu (Thu Sep 30 2010 - 01:53:08 CDT)
  • Gianluca Interlandi (Wed Sep 29 2010 - 18:38:32 CDT)
  • Richard Cook (Wed Sep 29 2010 - 16:50:52 CDT)
  • Gianluca Interlandi (Wed Sep 29 2010 - 16:54:50 CDT)
  • Gianluca Interlandi (Wed Sep 29 2010 - 16:34:24 CDT)
  • TRINH Minh Hieu (Wed Sep 29 2010 - 16:15:18 CDT)
  • Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
  • TRINH Minh Hieu (Wed Sep 29 2010 - 12:59:46 CDT)
  • Gianluca Interlandi (Tue Sep 28 2010 - 15:19:47 CDT)
  • Thomas C. Bishop (Tue Sep 28 2010 - 14:20:46 CDT)
  • John Stone (Tue Sep 28 2010 - 10:45:08 CDT)
  • Gianluca Interlandi (Sun Sep 26 2010 - 14:01:40 CDT)
• Explain Script
  • Nathan Kern (Wed May 06 2020 - 18:43:22 CDT)
  • Neena Susan Eappen (Wed May 06 2020 - 16:54:37 CDT)
• explicit secondary structure
  • John Stone (Tue Nov 08 2005 - 09:55:11 CST)
  • William Sheffler (Tue Nov 08 2005 - 00:21:29 CST)
• Export problem Licorice to STL
  • Kevin Smith (Mon Oct 03 2005 - 13:16:07 CDT)
  • John Stone (Mon Oct 03 2005 - 11:13:07 CDT)
  • Kevin Smith (Mon Oct 03 2005 - 10:50:53 CDT)
• export Ramachandran datas
  • Jianhui Tian (Thu Mar 15 2007 - 17:11:27 CDT)
  • John Stone (Thu Mar 15 2007 - 16:23:28 CDT)
  • Jianhui Tian (Thu Mar 15 2007 - 16:16:21 CDT)
• export trajectory all frames coordinates to numpy array
  • Bachir Aoun (Fri Jul 25 2014 - 10:34:43 CDT)
  • Josh Vermaas (Thu Jul 24 2014 - 17:54:39 CDT)
  • Axel Kohlmeyer (Thu Jul 24 2014 - 17:49:26 CDT)
  • Bachir Aoun (Thu Jul 24 2014 - 17:13:27 CDT)
  • Axel Kohlmeyer (Thu Jul 24 2014 - 17:04:28 CDT)
  • Bachir Aoun (Thu Jul 24 2014 - 16:33:06 CDT)
  • Ajasja LjubetiÄ� (Thu Jul 24 2014 - 14:59:45 CDT)
  • Axel Kohlmeyer (Thu Jul 24 2014 - 14:37:31 CDT)
  • Bachir Aoun (Thu Jul 24 2014 - 13:58:49 CDT)
• Export VMD graphics to POV-Ray
  • Axel Kohlmeyer (Fri Jan 11 2008 - 11:59:04 CST)
  • Igor Schapiro (Fri Jan 11 2008 - 08:22:13 CST)
• Exported POSCAR does not match original
  • Steve Jensen (Mon Apr 01 2013 - 17:12:37 CDT)
• exporting 3D model of a volume-based colored mesh
  • John Stone (Thu Sep 19 2019 - 10:53:26 CDT)
  • Walter Rocchia (Thu Sep 19 2019 - 10:42:44 CDT)
  • John Stone (Thu Sep 19 2019 - 10:35:35 CDT)
  • John Stone (Thu Sep 19 2019 - 10:43:17 CDT)
  • Walter Rocchia (Thu Sep 19 2019 - 08:39:00 CDT)
  • Luciano Abriata (Thu Sep 19 2019 - 02:37:07 CDT)
  • Luc Boisvert (Wed Sep 18 2019 - 17:36:22 CDT)
  • Walter Rocchia (Wed Sep 18 2019 - 16:10:18 CDT)
• Exporting a protein surface into a mesh (plain text file)
  • John Stone (Mon Oct 09 2006 - 12:18:33 CDT)
  • Emmanuel Levy (Mon Oct 09 2006 - 11:59:57 CDT)
• Exporting Average Structure to .pdb file
  • Josh Vermaas (Mon Aug 03 2015 - 13:09:50 CDT)
  • Kuiper, Ben (Mon Aug 03 2015 - 12:24:08 CDT)
• exporting marching cubes data from QuickSurf
  • John Stone (Wed Mar 21 2012 - 10:39:17 CDT)
  • Zhe Wu (Wed Mar 21 2012 - 10:02:16 CDT)
  • John Stone (Fri Mar 02 2012 - 15:47:41 CST)
  • Zhe Wu (Fri Mar 02 2012 - 15:04:18 CST)
  • John Stone (Thu Mar 01 2012 - 22:18:48 CST)
  • Zhe Wu (Thu Mar 01 2012 - 21:40:11 CST)
• Exporting VMD images to Alias
  • Andrew Dalke (Thu Jul 24 1997 - 14:28:40 CDT)
• exporting xyz file
  • Axel Kohlmeyer (Thu Jul 12 2007 - 10:37:40 CDT)
  • Bhaskar Jyoti Borah (Thu Jul 12 2007 - 11:19:25 CDT)
  • Axel Kohlmeyer (Thu Jul 12 2007 - 09:58:32 CDT)
  • Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:38:58 CDT)
• Exposed area of a particular residue from dehydrated trajectory
  • Josh Vermaas (Mon Jan 26 2015 - 11:30:46 CST)
  • Charles McAnany (Sun Jan 25 2015 - 23:31:38 CST)
• extended system file not found
  • Eashan C (Tue Nov 17 2020 - 20:41:14 CST)
  • Pang, Yui Tik (Tue Nov 17 2020 - 20:36:02 CST)
  • Eashan C (Tue Nov 17 2020 - 18:36:59 CST)
• extended xyz
  • John Stone (Wed May 31 2006 - 16:42:07 CDT)
  • John Stone (Wed May 31 2006 - 16:38:03 CDT)
  • Ioana Cozmuta (Fri May 26 2006 - 10:57:03 CDT)
• Extension crashes
  • Anoop Krishnan (Sat Sep 20 2014 - 01:43:04 CDT)
  • Anoop Krishnan (Sat Sep 20 2014 - 00:42:51 CDT)
  • John Stone (Fri Sep 19 2014 - 23:45:14 CDT)
  • Anoop Krishnan (Wed Aug 20 2014 - 23:30:37 CDT)
  • John Stone (Wed Aug 20 2014 - 00:04:24 CDT)
  • Anoop Krishnan (Tue Aug 19 2014 - 23:51:35 CDT)
  • John Stone (Tue Aug 19 2014 - 15:26:22 CDT)
  • Anoop Krishnan (Thu Aug 14 2014 - 06:49:57 CDT)
• Extensions menu empty
  • Woodson, Michael (Thu Oct 23 2014 - 16:31:57 CDT)
  • John Stone (Thu Oct 23 2014 - 16:22:02 CDT)
  • Woodson, Michael (Thu Oct 23 2014 - 16:14:59 CDT)
  • John Stone (Thu Oct 23 2014 - 16:00:00 CDT)
  • John Stone (Thu Oct 23 2014 - 15:43:35 CDT)
  • Woodson, Michael (Thu Oct 23 2014 - 15:51:13 CDT)
  • Josh Vermaas (Thu Oct 23 2014 - 14:14:12 CDT)
  • Woodson, Michael (Thu Oct 23 2014 - 13:15:05 CDT)
  • Josh Vermaas (Thu Oct 23 2014 - 12:13:23 CDT)
  • Woodson, Michael (Thu Oct 23 2014 - 10:27:54 CDT)
• Extensions menu is blank
  • Janet Jacobsen (Tue Sep 09 2008 - 12:07:24 CDT)
  • John Stone (Tue Sep 09 2008 - 10:52:00 CDT)
  • Janet Jacobsen (Mon Sep 08 2008 - 18:46:07 CDT)
• Extensions not working
  • John Stone (Mon Dec 03 2018 - 15:21:05 CST)
  • Francesco Pietra (Sat Dec 01 2018 - 09:17:03 CST)
• Extensions question
  • John Stone (Wed Sep 01 2004 - 13:45:20 CDT)
  • Troy Wymore (Wed Sep 01 2004 - 11:28:31 CDT)
• Extensions to the selection language
  • Olaf Lenz (Thu Jul 22 2004 - 11:08:38 CDT)
• external ???
  • John Stone (Thu Feb 02 2006 - 10:06:02 CST)
  • Damien Touraine (Thu Feb 02 2006 - 09:45:11 CST)
• external field application
  • Axel Kohlmeyer (Mon Jan 02 2012 - 12:21:06 CST)
  • sarah k (Mon Jan 02 2012 - 06:22:10 CST)
  • Axel Kohlmeyer (Sun Jan 01 2012 - 11:11:24 CST)
  • sarah k (Sun Jan 01 2012 - 03:57:21 CST)
• external force
  • John Stone (Tue Oct 24 2006 - 13:11:11 CDT)
  • Al-Rawi, Ahlam (Tue Oct 24 2006 - 11:41:54 CDT)
  • Al-Rawi, Ahlam (Wed Oct 18 2006 - 19:33:51 CDT)
• External renderer not rendering colors from volumetric data
  • Michael Geoffrey Klein (Wed Mar 25 2009 - 09:35:25 CDT)
  • John Stone (Wed Mar 25 2009 - 09:38:18 CDT)
  • Höfling Martin (Wed Mar 25 2009 - 08:34:24 CDT)
• Extra bond in TIP3 water
  • Axel Kohlmeyer (Wed Mar 09 2011 - 06:04:00 CST)
  • Julie Grouleff (Wed Mar 09 2011 - 04:56:53 CST)
• extra characters
  • kirtana S (Tue Sep 20 2011 - 10:54:07 CDT)
• Extra lines shown in trajectories in VMD
  • John Stone (Wed Jul 21 2010 - 13:08:34 CDT)
  • Elias Ahadi (Wed Jul 21 2010 - 12:26:08 CDT)
• extrabonds
  • John Stone (Wed Aug 24 2011 - 10:21:28 CDT)
  • Ling Wu (Wed Aug 24 2011 - 10:08:41 CDT)
  • John Stone (Tue Aug 23 2011 - 17:05:37 CDT)
  • Ling Wu (Tue Aug 23 2011 - 16:13:53 CDT)
• Extrabonds issue
  • Hélder Bandarra Tavares (Mon Jun 01 2020 - 08:31:51 CDT)
  • Josh Vermaas (Wed May 27 2020 - 10:49:31 CDT)
  • Hélder Bandarra Tavares (Wed May 27 2020 - 05:19:12 CDT)
• Extracellular Salt Bridges
  • Carlos Simmerling (Tue Jul 13 2021 - 16:21:28 CDT)
  • Manas Kohli (Tue Jul 13 2021 - 12:02:52 CDT)
• extract centers et radii of beads model
  • John Stone (Mon Sep 15 2008 - 16:11:20 CDT)
  • Matthieu Chavent (Mon Sep 15 2008 - 13:25:13 CDT)
• extract certain part of atoms into separate file
  • Ryan McGreevy (Thu Nov 19 2015 - 08:41:56 CST)
  • Morgan, Brittany (Thu Nov 19 2015 - 08:41:14 CST)
  • Albert (Thu Nov 19 2015 - 01:46:40 CST)
  • Ryan McGreevy (Wed Nov 18 2015 - 10:26:45 CST)
  • Albert (Wed Nov 18 2015 - 09:49:53 CST)
• Extract coordinates from a pdb file
  • Ashar Malik (Tue Jun 13 2017 - 08:27:08 CDT)
  • Ashar Malik (Mon Jun 12 2017 - 06:04:53 CDT)
  • jrhau lung (Mon Jun 12 2017 - 05:07:14 CDT)
  • Roshan Shrestha (Mon Jun 12 2017 - 04:19:00 CDT)
• extract euler angles from transformation matrix?
  • John Stone (Wed Dec 14 2005 - 10:11:34 CST)
  • Samuel Flores (Tue Dec 13 2005 - 15:43:03 CST)
• Extract Most Frequently found structure
  • Neena Susan Eappen (Fri Aug 23 2019 - 19:13:22 CDT)
  • Vermaas, Joshua (Fri Aug 23 2019 - 10:39:59 CDT)
  • Neena Susan Eappen (Fri Aug 23 2019 - 09:27:18 CDT)
  • Neena Susan Eappen (Fri Aug 16 2019 - 11:42:32 CDT)
  • Joao Ribeiro (Fri Aug 16 2019 - 08:11:56 CDT)
  • Neena Susan Eappen (Thu Aug 15 2019 - 22:31:08 CDT)
• Extract parameters of Shape-based Coarse Graining model from AA simulation
  • dongsheng lei (Thu Oct 23 2008 - 04:46:50 CDT)
  • Anton Arkhipov (Wed Oct 22 2008 - 10:28:02 CDT)
  • dongsheng lei (Wed Oct 22 2008 - 01:54:54 CDT)
• Extract specific frames from trajectory
  • Roman Petrenko (Thu Apr 01 2010 - 17:19:17 CDT)
  • Cathal Leahy (Thu Apr 01 2010 - 10:40:19 CDT)
• extracting 1-D data from a volumetric file
  • Bassam Haddad (Thu Feb 21 2019 - 16:02:08 CST)
  • Vermaas, Joshua (Thu Feb 21 2019 - 14:22:21 CST)
  • Giacomo Fiorin (Thu Feb 21 2019 - 13:31:40 CST)
  • Bassam Haddad (Thu Feb 21 2019 - 12:47:04 CST)
• Extracting chi angles / Saving coordinate with a script
  • Jon (Mon Sep 24 2012 - 03:56:59 CDT)
• Extracting complex of protein-ligand+water from every frame of DCD trajectory
  • KK R (Tue Feb 18 2014 - 13:30:19 CST)
• Extracting complex of protein-ligand+water from every frame of DCD trajectory. .
  • Martin, Erik W (Tue Feb 18 2014 - 14:50:23 CST)
• Extracting coordinates from DCD file to a single PDB file
  • Sourav Ray (Tue Feb 17 2015 - 11:22:12 CST)
  • Norman Geist (Tue Feb 17 2015 - 01:57:28 CST)
  • Sourav Ray (Tue Feb 17 2015 - 01:20:27 CST)
  • Norman Geist (Mon Feb 16 2015 - 06:33:50 CST)
  • Sourav Ray (Mon Feb 16 2015 - 04:53:02 CST)
  • Sourav Ray (Mon Feb 16 2015 - 04:36:17 CST)
  • Maxim Belkin (Mon Feb 16 2015 - 04:43:59 CST)
  • Norman Geist (Mon Feb 16 2015 - 03:29:54 CST)
  • Norman Geist (Mon Feb 16 2015 - 01:52:34 CST)
  • Sourav Ray (Mon Feb 16 2015 - 00:41:26 CST)
  • Sourav Ray (Mon Feb 16 2015 - 00:31:42 CST)
  • Maxim Belkin (Sun Feb 15 2015 - 23:51:48 CST)
  • Sourav Ray (Sun Feb 15 2015 - 23:21:59 CST)
  • Maxim Belkin (Fri Feb 13 2015 - 05:33:27 CST)
  • Sourav Ray (Fri Feb 13 2015 - 04:09:36 CST)
• extracting distances
  • Andrew Dalke (Thu Dec 10 1998 - 20:06:25 CST)
  • David Horita (Wed Dec 09 1998 - 17:00:54 CST)
• Extracting Entropies and Enthalpies With The ParseFEP Plugin Using SOS or BAR
  • Jérôme Hénin (Sat Jan 26 2013 - 11:43:59 CST)
  • David Huggins (Fri Jan 25 2013 - 07:41:58 CST)
• extracting grid points from an isosurface
  • Axel Kohlmeyer (Tue Aug 06 2013 - 16:39:57 CDT)
  • Chris Ing (Tue Aug 06 2013 - 15:04:08 CDT)
  • Georgios Gerogiokas (Tue Aug 06 2013 - 10:49:58 CDT)
  • John Stone (Tue Aug 06 2013 - 09:51:49 CDT)
  • Axel Kohlmeyer (Tue Aug 06 2013 - 06:05:11 CDT)
  • Georgios Gerogiokas (Tue Aug 06 2013 - 03:44:15 CDT)
• Extracting hydrogen bond information of water
  • Josh Vermaas (Thu Nov 03 2022 - 15:29:05 CDT)
  • Ata Madanchi (Thu Nov 03 2022 - 14:28:43 CDT)
• Extracting IR spectra from trajectories
  • Axel Kohlmeyer (Fri Oct 19 2007 - 15:30:50 CDT)
  • Cesar Luis Avila (Fri Oct 19 2007 - 10:08:45 CDT)
• extracting values from a dx file
  • John Stone (Mon Mar 27 2006 - 00:00:48 CST)
  • Axel Kohlmeyer (Thu Mar 23 2006 - 20:22:21 CST)
  • L. Michel Espinoza-Fonseca (Thu Mar 23 2006 - 07:45:35 CST)
• Extracting velocity information from .gro or .trr files
  • Davide Mercadante (Fri Jan 29 2016 - 03:48:55 CST)
  • John Stone (Thu Jan 28 2016 - 21:57:04 CST)
  • Davide Mercadante (Thu Jan 28 2016 - 10:30:47 CST)
• Extracting Voxel-based or STL from QuickSurf Representation
  • Josh Vermaas (Wed Oct 05 2022 - 16:51:57 CDT)
  • Max Win (Wed Oct 05 2022 - 15:13:51 CDT)
• extraction of bound water molecules in a trajectory
  • Thomas C. Bishop (Thu Oct 23 2008 - 08:46:59 CDT)
  • mon_sharma_at_research.iiit.ac.in (Thu Oct 23 2008 - 04:39:07 CDT)
• Eye position / camera position
  • John Stone (Thu Jun 09 2005 - 16:51:33 CDT)
  • Breght Boschker (Thu Jun 02 2005 - 05:27:49 CDT)
• faced error in operating vmd
  • Josh Vermaas (Mon Apr 06 2020 - 12:00:22 CDT)
  • Ram Krishna Adhikari (Mon Apr 06 2020 - 10:36:17 CDT)
  • Ram Krishna Adhikari (Fri Mar 27 2020 - 11:45:42 CDT)
  • John Stone (Fri Mar 27 2020 - 11:56:58 CDT)
• fading rep scripts
  • John Stone (Tue Jun 13 2006 - 13:42:31 CDT)
  • John Stone (Tue Jun 13 2006 - 13:28:10 CDT)
  • John Stone (Tue Jun 13 2006 - 12:53:17 CDT)
  • John Stone (Tue Jun 13 2006 - 11:16:03 CDT)
  • Brian Bennion (Mon Jun 12 2006 - 17:48:21 CDT)
  • John Stone (Mon Jun 12 2006 - 17:43:59 CDT)
  • Brian Bennion (Mon Jun 12 2006 - 16:41:38 CDT)
• Failed to compile VMD 1.9.2 on OSX 10.9
  • Zhenquan Hu (Thu Mar 06 2014 - 16:43:55 CST)
  • Zhenquan Hu (Thu Mar 06 2014 - 15:34:53 CST)
  • John Stone (Thu Mar 06 2014 - 15:42:06 CST)
  • John Stone (Wed Mar 05 2014 - 22:51:25 CST)
  • Zhenquan Hu (Tue Feb 25 2014 - 10:19:01 CST)
• Failed to create Optix rendering context ERROR: Invalid value (OptiXRenderer.C:1214
  • John Stone (Thu Jun 11 2020 - 21:56:17 CDT)
  • John Stone (Fri May 29 2020 - 16:46:33 CDT)
  • John Stone (Wed May 27 2020 - 16:26:16 CDT)
  • John Stone (Mon May 25 2020 - 23:16:04 CDT)
  • Lorenzo Casalino (Mon May 25 2020 - 15:28:53 CDT)
• Failing to load AMBER parameter files in VMD
  • Prathit Chatterjee (Thu Oct 22 2020 - 06:11:34 CDT)
• Failure getting correct charge on the system
  • Francesco Pietra (Mon Aug 13 2012 - 05:13:41 CDT)
  • Francesco Pietra (Mon Aug 13 2012 - 04:38:46 CDT)
  • Axel Kohlmeyer (Mon Aug 13 2012 - 04:45:16 CDT)
  • Axel Kohlmeyer (Mon Aug 13 2012 - 03:37:08 CDT)
  • Francesco Pietra (Mon Aug 13 2012 - 02:34:56 CDT)
• Failure of autopsf with modified nucleotides
  • Peter Freddolino (Thu Jan 06 2022 - 15:27:37 CST)
  • Francesco Pietra (Thu Jan 06 2022 - 14:28:13 CST)
  • Peter Freddolino (Thu Jan 06 2022 - 12:12:50 CST)
  • Francesco Pietra (Thu Jan 06 2022 - 09:44:32 CST)
  • Francesco Pietra (Thu Jan 06 2022 - 08:45:26 CST)
  • Peter Freddolino (Thu Jan 06 2022 - 07:55:42 CST)
  • Francesco Pietra (Thu Jan 06 2022 - 03:12:44 CST)
• Failure of AutoSCFBuilder to recognize all monomers
  • Francesco Pietra (Sun Jan 03 2010 - 04:54:24 CST)
• failure of charge optimization by fftk
  • WT Ren (Thu Jul 11 2019 - 11:00:57 CDT)
  • mariano spivak (Tue Jul 09 2019 - 17:56:47 CDT)
  • WT Ren (Sun Jun 30 2019 - 20:58:24 CDT)
  • mariano spivak (Sun Jun 30 2019 - 11:01:20 CDT)
  • WT Ren (Sun Jun 30 2019 - 09:42:13 CDT)
• Failure to open PDB files
  • Axel Kohlmeyer (Mon Aug 25 2008 - 14:52:38 CDT)
  • hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
• Failure to run tcl script at the mainframe
  • Francesco Pietra (Mon Jun 01 2015 - 01:49:30 CDT)
  • John Stone (Sun May 31 2015 - 17:51:52 CDT)
  • Francesco Pietra (Sat May 30 2015 - 12:30:29 CDT)
  • John Stone (Sat May 30 2015 - 10:41:21 CDT)
  • Francesco Pietra (Sat May 30 2015 - 10:19:32 CDT)
• Failure with AutoPSF (PDB has x, y, z zero)
  • Peter Freddolino (Sat Dec 05 2009 - 08:21:29 CST)
  • Francesco Pietra (Fri Dec 04 2009 - 12:35:12 CST)
• Fake angles created by AutoPSF
  • Francesco Pietra (Wed Dec 23 2020 - 08:52:35 CST)
• Fake Guru Hamid Arabnia and bogus WORLDCOMP and CSCI
  • jermy23_at_hushmail.com (Sat Jun 14 2014 - 08:29:47 CDT)
• Famous repl1ca w4tches r0lex Cartier Bvlgari
  • Shari Chin (Fri Apr 20 2007 - 23:08:24 CDT)
• fancy representations for lipids?
  • Mauricio Carrillo Tripp (Mon Oct 03 2005 - 14:23:04 CDT)
  • John Stone (Mon Oct 03 2005 - 11:45:35 CDT)
  • nsapay_at_ibcp.fr (Wed Sep 28 2005 - 18:22:51 CDT)
• Farewell VMD
  • Giacomo Fiorin (Mon Jul 30 2018 - 13:03:55 CDT)
  • Vermaas, Joshua (Mon Jul 30 2018 - 12:38:26 CDT)
  • John Stone (Mon Jul 30 2018 - 11:56:46 CDT)
  • Ivan Gregoretti (Mon Jul 30 2018 - 11:33:01 CDT)
  • Giacomo Fiorin (Mon Jul 30 2018 - 08:40:36 CDT)
  • Vlastimil Zíma (Sun Jul 29 2018 - 14:02:54 CDT)
• Fast PBC wrapping
  • Jérôme Hénin (Wed Mar 09 2016 - 13:05:56 CST)
  • Jérôme Hénin (Tue Mar 08 2016 - 11:13:38 CST)
• Fast PBC wrapping in VMD
  • Jérôme Hénin (Fri Nov 25 2016 - 07:40:26 CST)
  • Sourav Ray (Thu Nov 24 2016 - 19:55:32 CST)
  • Jérôme Hénin (Fri Nov 18 2016 - 18:46:56 CST)
  • Jérôme Hénin (Thu Nov 17 2016 - 03:09:14 CST)
  • Grace Brannigan (Wed Nov 16 2016 - 09:11:51 CST)
  • Jérôme Hénin (Wed Nov 16 2016 - 07:54:39 CST)
• Fast routines for distance evaluations using PBC.
  • John Stone (Fri May 11 2007 - 13:46:39 CDT)
  • John Stone (Fri May 11 2007 - 13:15:27 CDT)
  • Arturas Ziemys (Fri May 11 2007 - 11:52:49 CDT)
• fasta2pdb
  • Peter Freddolino (Mon Nov 10 2008 - 17:30:19 CST)
  • Eric H. Lee (Mon Nov 10 2008 - 15:16:00 CST)
  • Roman Petrenko (Mon Nov 10 2008 - 14:33:24 CST)
• Faster secondary structure assignment
  • John Stone (Tue Aug 31 2010 - 10:57:35 CDT)
  • Jérôme Hénin (Tue Aug 31 2010 - 10:38:49 CDT)
  • John Stone (Mon Aug 30 2010 - 11:57:25 CDT)
  • Jérôme Hénin (Mon Aug 30 2010 - 11:28:45 CDT)
• Faster vector computations in Tcl
  • Jérôme Hénin (Fri Dec 08 2017 - 12:41:33 CST)
• FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0*
  • Chuck (Mon Feb 23 2009 - 15:52:05 CST)
• FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OE
  • Axel Kohlmeyer (Thu Nov 06 2014 - 22:23:45 CST)
  • Mihaela Drenscko (Thu Nov 06 2014 - 12:47:34 CST)
• FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT
  • Aravinda Munasinghe (Wed Jul 10 2019 - 11:18:51 CDT)
  • Joao Ribeiro (Wed Jul 10 2019 - 09:49:09 CDT)
  • 黄洋 (Wed Jul 10 2019 - 09:03:44 CDT)
• FATAL ERROR: UNABLE TO FIND ANGLE PARAMETERS FOR HB2 CT1 NH3 (ATOMS 1 5 8)
  • SONAL GAHLAWAT (Thu Aug 10 2023 - 13:32:17 CDT)
• FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CD2R6A LPA1
  • zeynab hosseini (Mon Aug 16 2021 - 01:19:35 CDT)
  • Michael Robinson (Sun Aug 15 2021 - 22:55:51 CDT)
  • zeynab hosseini (Fri Aug 13 2021 - 03:28:24 CDT)
• Fatal error: Unable to find dihedral parameters
  • Kiana Jahani (Thu Dec 09 2021 - 02:37:41 CST)
  • Peter Freddolino (Wed Dec 08 2021 - 07:30:05 CST)
  • Kiana Jahani (Wed Dec 08 2021 - 00:32:49 CST)
  • Peter Freddolino (Tue Dec 07 2021 - 08:06:11 CST)
  • Kiana Jahani (Tue Dec 07 2021 - 05:30:01 CST)
  • Peter Freddolino (Mon Dec 06 2021 - 07:57:07 CST)
  • Kiana Jahani (Mon Dec 06 2021 - 02:19:29 CST)
  • Peter Freddolino (Sun Dec 05 2021 - 10:14:11 CST)
  • Kiana Jahani (Sun Dec 05 2021 - 06:26:46 CST)
• FATAL ERROR: UNABLE TO FIND DIHEDRAL PARAMETERS FOR NH3 CT1 CT2A CT2 (ATOMS 1 5 7 10)
  • Allen, Caley R (Mon Jan 27 2014 - 12:32:45 CST)
  • Tristan Croll (Fri Jan 24 2014 - 02:49:22 CST)
  • Allen, Caley R (Thu Jan 23 2014 - 16:00:54 CST)
  • Josh Vermaas (Thu Jan 23 2014 - 15:12:34 CST)
  • Allen, Caley R (Thu Jan 23 2014 - 13:37:06 CST)
• FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC*
  • Research Jubilant (Thu Apr 18 2013 - 13:03:53 CDT)
  • Mayne, Christopher G (Wed Apr 17 2013 - 22:18:05 CDT)
  • Research Jubilant (Wed Apr 17 2013 - 18:48:41 CDT)
  • Josh Vermaas (Wed Apr 17 2013 - 17:57:01 CDT)
  • Research Jubilant (Wed Apr 17 2013 - 16:54:08 CDT)
  • Jeffrey Potoff (Wed Apr 17 2013 - 15:16:06 CDT)
  • Mayne, Christopher G (Wed Apr 17 2013 - 14:11:45 CDT)
  • Research Jubilant (Wed Apr 17 2013 - 12:51:08 CDT)
• favorite VMD material settings?
  • John Stone (Fri Aug 11 2006 - 14:47:18 CDT)
• FC4 stereo problems
  • John Stone (Thu Jul 28 2005 - 12:55:24 CDT)
  • John Stone (Wed Jul 27 2005 - 18:59:05 CDT)
  • Cameron Mura (Wed Jul 27 2005 - 18:03:58 CDT)
• feature request
  • John Stone (Wed Feb 23 2011 - 15:45:48 CST)
  • Francesco Oteri (Wed Feb 23 2011 - 15:37:34 CST)
  • Axel Kohlmeyer (Sun Oct 19 2008 - 13:26:42 CDT)
  • Tamara Rogers (Sun Oct 19 2008 - 12:38:18 CDT)
• Feature request for vmd 1.8
  • Justin Gullingsrud (Mon Oct 28 2002 - 09:53:56 CST)
  • Stéphane Teletchéa (Mon Oct 28 2002 - 04:10:55 CST)
• Feature request: "Apply to all molecules" option in graphical representation window
  • Bryan Roessler (Wed Jan 18 2017 - 17:44:29 CST)
  • John Stone (Wed Jan 18 2017 - 17:17:50 CST)
  • Bryan Roessler (Wed Jan 18 2017 - 17:06:48 CST)
• Feature request: capturing tool location and steering forces in IMD trajectory
  • John Stone (Mon May 19 2014 - 14:54:39 CDT)
  • Tristan Croll (Fri May 16 2014 - 16:27:01 CDT)
  • John Stone (Fri May 16 2014 - 14:20:10 CDT)
  • Tristan Croll (Mon Apr 07 2014 - 03:29:31 CDT)
  • Axel Kohlmeyer (Mon Apr 07 2014 - 01:23:09 CDT)
  • Tristan Croll (Mon Apr 07 2014 - 00:45:51 CDT)
• Feature request: Change printf( to fprintf(stderr, in molfile plugins
  • Charles McAnany (Fri Jan 29 2016 - 11:13:40 CST)
  • John Stone (Thu Jan 28 2016 - 16:11:55 CST)
  • Charles McAnany (Thu Jan 28 2016 - 12:23:46 CST)
• Feature request: modify several representations at the same time
  • Luis Gracia (Wed Sep 29 2004 - 15:37:06 CDT)
• Feature request: output to Blender 3D modelling software
  • John Stone (Wed Jul 12 2006 - 00:07:45 CDT)
  • John Stone (Tue Jul 11 2006 - 16:18:23 CDT)
  • Ralph Jimenez (Tue Jul 11 2006 - 14:19:30 CDT)
  • Sabuj Pattanayek (Tue Jul 11 2006 - 13:19:33 CDT)
  • John Stone (Tue Jul 11 2006 - 11:06:43 CDT)
  • Ralph Jimenez (Tue Jul 11 2006 - 10:32:31 CDT)
• Feature request: PBC from CHARMM DCD files
  • John Stone (Thu Oct 02 2003 - 16:49:14 CDT)
  • Tyler Luchko (Thu Oct 02 2003 - 13:08:27 CDT)
• Feature request: read environment to set FreeVR lib, include paths
  • Stock, Mark (Fri Feb 13 2015 - 12:07:56 CST)
  • John Stone (Fri Feb 13 2015 - 08:58:05 CST)
  • Stock, Mark (Thu Feb 12 2015 - 17:54:02 CST)
• Feature Request: Stride on vmd commandline startup
  • Axel Kohlmeyer (Tue Jan 13 2015 - 08:18:01 CST)
  • Norman Geist (Tue Jan 13 2015 - 07:44:31 CST)
• Feature suggestion: "glow" representation
  • John Stone (Wed Aug 06 2014 - 09:50:09 CDT)
  • Josh Vermaas (Wed Aug 06 2014 - 09:21:04 CDT)
  • Tristan Croll (Wed Aug 06 2014 - 01:49:00 CDT)
• Fedora 20 x86_64 + ibus + sazanami fonts + GNOME => VMD 1.9.1 crashes
  • René Genz (Mon Mar 10 2014 - 14:07:40 CDT)
  • René Genz (Mon Mar 10 2014 - 14:15:23 CDT)
  • John Stone (Sun Mar 09 2014 - 09:25:50 CDT)
  • René Genz (Sun Mar 09 2014 - 08:51:55 CDT)
• fedora core 4 install problem
  • Michal Kolinski (Mon Dec 12 2005 - 05:06:08 CST)
  • John Stone (Fri Dec 09 2005 - 09:49:22 CST)
  • Michal Kolinski (Fri Dec 09 2005 - 05:06:24 CST)
• fedora core 5 and VMD 1.8.4
  • John Stone (Tue Apr 25 2006 - 23:54:27 CDT)
  • Brian Kidd (Tue Apr 25 2006 - 23:02:17 CDT)
  • John Stone (Tue Apr 25 2006 - 22:51:55 CDT)
  • Brian Kidd (Tue Apr 25 2006 - 20:06:50 CDT)
  • John Stone (Tue Apr 25 2006 - 19:20:27 CDT)
  • Brian Kidd (Tue Apr 25 2006 - 18:37:32 CDT)
• feedback on pc-over-ip technology?
  • John Stone (Mon Sep 08 2008 - 11:07:09 CDT)
  • Tru Huynh (Mon Sep 08 2008 - 10:40:24 CDT)
• Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets
  • John Stone (Fri Nov 11 2011 - 16:13:14 CST)
  • Gianluca Interlandi (Fri Nov 11 2011 - 13:01:17 CST)
  • John Stone (Fri Nov 11 2011 - 12:42:32 CST)
  • Gianluca Interlandi (Fri Nov 11 2011 - 12:30:08 CST)
  • John Stone (Fri Nov 11 2011 - 10:19:21 CST)
  • Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
  • Andrew Jewett (Thu Nov 03 2011 - 16:07:46 CDT)
  • John Stone (Mon Oct 31 2011 - 10:12:15 CDT)
• FEP Energy very high: Mutual exclusion of atoms
  • Nitin Bhardwaj (Tue Nov 07 2006 - 17:29:49 CST)
• FEP simulation analysis error
  • Mckellan S Gonzales (Thu Aug 20 2020 - 11:49:03 CDT)
• FEP tutorial plot error
  • Brian Radak (Thu Jan 24 2019 - 13:37:07 CST)
  • surya narayanan chandrasekaran (Thu Jan 17 2019 - 23:07:35 CST)
  • soroush ziaei (Thu Jan 17 2019 - 06:57:21 CST)
  • surya narayanan chandrasekaran (Wed Jan 16 2019 - 07:00:25 CST)
• FEP with intermediary segments
  • Francesco Pietra (Thu Apr 26 2018 - 10:20:21 CDT)
• few colors in new ribbons representation - raytrace output
  • John Stone (Sat Jan 31 2004 - 16:47:43 CST)
  • John Stone (Fri Jan 30 2004 - 00:57:40 CST)
  • Charles_at_Schwieters.org (Thu Jan 29 2004 - 21:31:23 CST)
  • John Stone (Thu Jan 29 2004 - 20:21:53 CST)
  • Charles_at_Schwieters.org (Thu Jan 29 2004 - 17:40:15 CST)
• FF parameters for EtSNO
  • JC Gumbart (Mon Jul 06 2020 - 19:21:36 CDT)
  • JC Gumbart (Mon Jul 06 2020 - 18:57:17 CDT)
  • Ritu Arora (Mon Jul 06 2020 - 11:34:50 CDT)
• FfTK
  • RAHUL SURESH (Thu Aug 31 2017 - 10:35:21 CDT)
  • Abhishek TYAGI (Mon Aug 14 2017 - 06:41:21 CDT)
  • RAHUL SURESH (Mon Aug 14 2017 - 03:14:35 CDT)
  • RAHUL SURESH (Sat Aug 12 2017 - 10:57:02 CDT)
  • JC Gumbart (Sat Aug 12 2017 - 08:37:56 CDT)
  • RAHUL SURESH (Fri Aug 11 2017 - 02:04:38 CDT)
• ffTK & transition metals
  • JC Gumbart (Sun Oct 04 2015 - 08:23:55 CDT)
  • Francesco Pietra (Sun Oct 04 2015 - 06:01:37 CDT)
  • JC Gumbart (Sat Oct 03 2015 - 15:55:02 CDT)
  • Francesco Pietra (Fri Oct 02 2015 - 01:03:27 CDT)
  • JC Gumbart (Thu Oct 01 2015 - 16:38:01 CDT)
  • Francesco Pietra (Sun Sep 27 2015 - 13:20:28 CDT)
• FFTK - bond parameters
  • Mohan maruthi sena (Tue Mar 08 2016 - 05:11:53 CST)
  • Mayne, Christopher G (Mon Mar 07 2016 - 12:30:26 CST)
  • Mohan maruthi sena (Thu Mar 03 2016 - 11:32:24 CST)
• FFTK - Dihedral doesn't fit the QM target data
  • Gumbart, JC (Fri Mar 22 2024 - 16:21:59 CDT)
  • Daniel Fellner (Thu Mar 21 2024 - 18:25:16 CDT)
  • francesco quilli (Thu Mar 21 2024 - 08:27:40 CDT)
  • Klimkowski, V (Thu Mar 14 2024 - 18:23:27 CDT)
  • Gumbart, JC (Thu Mar 14 2024 - 07:18:31 CDT)
  • Daniel Fellner (Thu Mar 14 2024 - 03:51:15 CDT)
  • francesco quilli (Thu Mar 14 2024 - 02:55:24 CDT)
  • Gumbart, JC (Mon Mar 11 2024 - 21:43:51 CDT)
  • Ernesto Aleksei Delgado Hurtado (Mon Mar 11 2024 - 17:21:46 CDT)
  • francesco quilli (Mon Mar 11 2024 - 10:12:52 CDT)
• FFTK - issue after hessian loading during bonds/angles optimization
  • Yasser Almeida-Hernandez (Tue Aug 11 2020 - 05:32:05 CDT)
  • JC Gumbart (Mon Aug 10 2020 - 16:19:18 CDT)
  • Yasser Almeida-Hernandez (Mon Aug 10 2020 - 04:41:58 CDT)
• fftk - MM/QM distances not converging
  • Mayne, Christopher G (Mon Jul 24 2017 - 22:28:54 CDT)
  • Kitzmiller, Nate (Sat Jul 22 2017 - 23:44:30 CDT)
  • McCullough, Scott (Sat Jul 22 2017 - 15:36:35 CDT)
• fftk - Opt-charges
  • Mayne, Christopher G (Mon Apr 15 2013 - 11:54:54 CDT)
  • Carolina Penhavel de souza (Mon Apr 15 2013 - 09:40:26 CDT)
• fftk - Opt. Torsion
  • Carolina Penhavel de souza (Tue Apr 02 2013 - 17:53:54 CDT)
• FFTK - ORCA
  • Mariano Spivak (Thu Sep 30 2021 - 11:17:33 CDT)
  • Bassam Haddad (Thu Sep 30 2021 - 11:07:34 CDT)
  • Bassam Haddad (Tue Sep 28 2021 - 15:21:28 CDT)
  • Mariano Spivak (Tue Sep 28 2021 - 14:43:29 CDT)
  • Bassam Haddad (Tue Sep 21 2021 - 10:34:26 CDT)
  • Mariano Spivak (Sun Sep 19 2021 - 13:20:05 CDT)
  • Bassam Haddad (Sat Sep 18 2021 - 11:02:25 CDT)
  • Bassam Haddad (Mon Sep 13 2021 - 04:41:40 CDT)
• FFTK - Step -3 missing log file.
  • Mayne, Christopher G (Sun Apr 28 2013 - 11:47:16 CDT)
  • aravind chandrasekaran (Sun Apr 28 2013 - 10:54:59 CDT)
• FFTK abort charge calculation.
  • Mayne, Christopher G (Tue Oct 27 2015 - 17:10:11 CDT)
  • Eric Schibli (Tue Oct 27 2015 - 16:38:56 CDT)
• FFTK about Water Interaction
  • Francesco Pietra (Thu Jul 18 2013 - 11:18:21 CDT)
• FFTK and CGenFF
  • Mayne, Christopher G (Wed Jul 17 2013 - 15:27:27 CDT)
  • Mayne, Christopher G (Wed Jul 17 2013 - 14:54:00 CDT)
  • Francesco Pietra (Wed Jul 17 2013 - 10:14:04 CDT)
• fftk and charmmgui vdW parameters
  • Prof. Eddie (Sat Feb 06 2021 - 08:11:04 CST)
  • Daniel Fellner (Wed Feb 03 2021 - 17:02:50 CST)
  • Prof. Eddie (Wed Feb 03 2021 - 10:29:56 CST)
• ffTK and geometry optimization level
  • Mayne, Christopher G (Mon Aug 24 2015 - 10:49:46 CDT)
  • Francesco Pietra (Sun Aug 23 2015 - 04:09:15 CDT)
  • Mayne, Christopher G (Thu Aug 20 2015 - 13:09:10 CDT)
  • Francesco Pietra (Thu Aug 20 2015 - 12:50:55 CDT)
  • Mayne, Christopher G (Thu Aug 20 2015 - 12:23:09 CDT)
  • Francesco Pietra (Thu Aug 20 2015 - 10:13:52 CDT)
• fftk and impropers
  • Mayne, Christopher G (Thu Sep 24 2015 - 08:53:36 CDT)
  • Prof. Eddie (Thu Sep 24 2015 - 08:04:42 CDT)
• FFTK and the divide and conquer strategy
  • Mayne, Christopher G (Thu Feb 04 2016 - 10:10:25 CST)
  • fvlieffe (Thu Feb 04 2016 - 03:37:02 CST)
• FFTK Angle optimization error
  • Yasser Almeida-Hernandez (Mon Aug 03 2020 - 11:27:40 CDT)
  • Yasser Almeida-Hernandez (Mon Aug 03 2020 - 09:46:12 CDT)
  • JC Gumbart (Mon Aug 03 2020 - 09:28:00 CDT)
  • Yasser Almeida-Hernandez (Mon Aug 03 2020 - 06:46:49 CDT)
• FFTK Atom types
  • Francesco Pietra (Wed Mar 27 2013 - 10:54:21 CDT)
  • Mayne, Christopher G (Wed Mar 27 2013 - 08:24:31 CDT)
  • Mayne, Christopher G (Wed Mar 27 2013 - 08:06:05 CDT)
  • JC Gumbart (Wed Mar 27 2013 - 08:00:01 CDT)
  • Francesco Pietra (Wed Mar 27 2013 - 02:21:13 CDT)
• fftk autoDetect indices and
  • Mayne, Christopher G (Tue Jul 14 2015 - 09:25:07 CDT)
  • Evandro Semighini (Tue Jul 14 2015 - 07:30:44 CDT)
  • fvlieffe (Tue Jul 14 2015 - 07:13:10 CDT)
• FFTK baOpt electronic effects
  • Aleksei (Wed Apr 13 2022 - 22:28:14 CDT)
  • Daniel Fellner (Wed Apr 13 2022 - 21:39:00 CDT)
  • Aleksei (Wed Apr 13 2022 - 20:53:46 CDT)
  • Daniel Fellner (Wed Apr 13 2022 - 12:33:04 CDT)
• fftk Bond guassian input for hessian calculation
  • Chitrak Gupta (Tue Sep 15 2015 - 10:47:52 CDT)
  • Mayne, Christopher G (Tue Sep 15 2015 - 08:07:10 CDT)
  • fvlieffe (Tue Sep 15 2015 - 06:07:14 CDT)
• FFTK Bond optimization
  • Mayne, Christopher G (Fri Sep 25 2015 - 16:18:52 CDT)
  • Mayne, Christopher G (Fri Sep 25 2015 - 16:14:33 CDT)
  • Chitrak Gupta (Fri Sep 25 2015 - 15:43:45 CDT)
  • Chitrak Gupta (Fri Sep 25 2015 - 15:44:39 CDT)
  • Mayne, Christopher G (Wed Sep 23 2015 - 09:56:01 CDT)
  • Chitrak Gupta (Tue Sep 22 2015 - 18:18:00 CDT)
  • Chitrak Gupta (Tue Sep 22 2015 - 18:06:30 CDT)
  • Mayne, Christopher G (Mon Sep 14 2015 - 08:34:39 CDT)
  • Chitrak Gupta (Fri Sep 11 2015 - 08:26:42 CDT)
• FFTK bond optimization +idlepoll request
  • Francesco Pietra (Mon Apr 01 2013 - 00:39:22 CDT)
  • JC Gumbart (Mon Apr 01 2013 - 00:45:20 CDT)
  • Josh Vermaas (Sun Mar 31 2013 - 14:14:42 CDT)
  • JC Gumbart (Sun Mar 31 2013 - 14:13:41 CDT)
  • Francesco Pietra (Sun Mar 31 2013 - 13:14:38 CDT)
• FFTK Bond/Angle Optimization issue with namd2
  • JC Gumbart (Tue Feb 20 2018 - 10:27:53 CST)
  • JC Gumbart (Tue Feb 20 2018 - 09:43:21 CST)
  • JC Gumbart (Tue Feb 20 2018 - 01:20:50 CST)
  • Gabi Heller (Fri Feb 16 2018 - 06:05:00 CST)
• fftk bonded and dihedral optimization question
  • Richard Wood (Fri Mar 20 2015 - 14:29:57 CDT)
  • Richard Wood (Fri Mar 20 2015 - 13:06:15 CDT)
  • Mayne, Christopher G (Fri Mar 20 2015 - 13:19:51 CDT)
  • Mayne, Christopher G (Fri Mar 20 2015 - 12:53:22 CDT)
  • Richard Wood (Fri Mar 20 2015 - 12:50:25 CDT)
  • Mayne, Christopher G (Fri Mar 20 2015 - 12:41:00 CDT)
  • Mayne, Christopher G (Fri Mar 20 2015 - 12:04:04 CDT)
  • Mayne, Christopher G (Fri Mar 20 2015 - 11:21:42 CDT)
  • Chaya Stern (Fri Mar 20 2015 - 11:11:59 CDT)
  • Tim Lo (Fri Mar 20 2015 - 10:36:27 CDT)
  • Chaya Stern (Fri Mar 20 2015 - 09:13:01 CDT)
• fftk bonded parameter optimization
  • Mayne, Christopher G (Wed Apr 01 2015 - 16:34:32 CDT)
  • Chaya Stern (Wed Apr 01 2015 - 15:57:28 CDT)
• FFTK bonded parameter optimization with ORCA
  • Marcelo C. R. Melo (Mon Aug 03 2020 - 17:26:11 CDT)
• ffTK Calc Bonded Tab gbw file not recognized INQUIRY
  • Joel Subach (Tue Feb 20 2024 - 05:55:28 CST)
  • Joel Subach (Fri Feb 16 2024 - 07:50:37 CST)
  • Joel Subach (Wed Feb 14 2024 - 05:40:24 CST)
• ffTK can't use empty string as operand of "*" vmd194a53win64-SetupV7.exe
  • Gumbart, JC (Sat Apr 09 2022 - 20:40:03 CDT)
  • Gumbart, JC (Thu Apr 07 2022 - 08:34:27 CDT)
  • Rahul Nikhar (Tue Apr 05 2022 - 18:46:47 CDT)
• FFTK Characterising Distortions
  • JC Gumbart (Thu Apr 23 2020 - 19:48:37 CDT)
  • Daniel Fellner (Thu Apr 23 2020 - 02:32:58 CDT)
• FFTK Charge Opt Indoles
  • Daniel Fellner (Sun Sep 27 2020 - 20:15:46 CDT)
• FFTK charge optimisation does not converge
  • Mayne, Christopher G (Thu May 18 2017 - 21:46:03 CDT)
  • Siladitya Padhi (Thu May 18 2017 - 21:30:55 CDT)
  • Mayne, Christopher G (Tue May 16 2017 - 13:59:52 CDT)
  • Siladitya Padhi (Sun May 14 2017 - 15:55:41 CDT)
• FFTK Charge Optimization
  • McGuire, Kelly (Fri May 18 2018 - 13:36:22 CDT)
  • Vermaas, Joshua (Fri May 18 2018 - 13:25:05 CDT)
  • McGuire, Kelly (Fri May 18 2018 - 11:58:14 CDT)
• FFTK charge optimization - COLP
  • Mayne, Christopher G (Fri Jun 26 2015 - 10:51:22 CDT)
• ffTK charge optimization error
  • Gumbart, JC (Fri Jan 12 2024 - 18:13:38 CST)
  • Gumbart, JC (Tue Jan 09 2024 - 21:54:57 CST)
  • francesco quilli (Mon Jan 08 2024 - 08:38:31 CST)
• FFTK charge optimization of one charge group
  • Mayne, Christopher G (Tue Feb 10 2015 - 15:27:35 CST)
  • Elena Lilkova (Tue Feb 10 2015 - 08:08:18 CST)
  • Elena Lilkova (Tue Feb 10 2015 - 08:36:35 CST)
• fftk charge optimization option
  • JC Gumbart (Sun Jan 20 2013 - 13:16:33 CST)
  • ehsan zahedinejad (Sat Jan 19 2013 - 19:12:06 CST)
• FFTK Charge Optimization Target Data
  • Daniel Fellner (Thu Apr 07 2022 - 03:12:01 CDT)
  • Gumbart, JC (Wed Apr 06 2022 - 21:21:04 CDT)
  • Daniel Fellner (Mon Apr 04 2022 - 02:04:40 CDT)
  • Gumbart, JC (Sun Apr 03 2022 - 15:41:48 CDT)
  • Daniel Fellner (Fri Apr 01 2022 - 02:52:01 CDT)
  • Gumbart, JC (Thu Mar 31 2022 - 10:51:07 CDT)
  • Daniel Fellner (Wed Mar 30 2022 - 02:13:08 CDT)
• ffTK charge optimizations
  • Amira Yu (Fri Oct 30 2015 - 09:22:24 CDT)
• fftk charge validation
  • Mayne, Christopher G (Wed Sep 09 2015 - 09:42:24 CDT)
  • fvlieffe (Wed Sep 09 2015 - 04:58:59 CDT)
• FFTK dihedral fitting
  • Mayne, Christopher G (Mon Apr 04 2016 - 10:09:06 CDT)
  • Mohan maruthi sena (Thu Mar 31 2016 - 22:55:00 CDT)
  • Mayne, Christopher G (Thu Mar 31 2016 - 10:05:02 CDT)
  • Mohan maruthi sena (Wed Mar 30 2016 - 09:37:49 CDT)
• ffTK dihedral fitting question and cmap derivation
  • Josh Vermaas (Wed Oct 02 2013 - 09:00:54 CDT)
  • Mayne, Christopher G (Wed Oct 02 2013 - 08:04:29 CDT)
  • Daniel Klose (Wed Oct 02 2013 - 03:24:38 CDT)
• FFTK Dihedral Optimization Error
  • JC Gumbart (Tue Oct 24 2017 - 17:21:14 CDT)
  • JC Gumbart (Fri Oct 20 2017 - 16:54:15 CDT)
  • Nikolaos Galanakis (Fri Oct 20 2017 - 11:50:39 CDT)
• FFTK dihedral parametrization
  • Gumbart, JC (Wed Jan 29 2020 - 11:54:19 CST)
  • Adupa Vasista (Wed Jan 29 2020 - 09:34:57 CST)
  • David Sáez (Wed Jan 29 2020 - 08:58:11 CST)
  • Adupa Vasista (Wed Jan 29 2020 - 08:24:27 CST)
  • David Sáez (Wed Jan 29 2020 - 07:57:40 CST)
  • Gumbart, JC (Mon Jan 27 2020 - 19:52:53 CST)
  • David Sáez (Fri Jan 24 2020 - 23:07:00 CST)
• FFTK dihedral paramterization
  • Akash Banerjee (Fri Jan 08 2021 - 07:30:11 CST)
  • Gumbart, JC (Thu Jan 07 2021 - 17:49:26 CST)
  • Akash Banerjee (Thu Jan 07 2021 - 16:06:23 CST)
• FFTK dihedral scan
  • Mayne, Christopher G (Sat Nov 21 2015 - 10:44:49 CST)
  • Chitrak Gupta (Sat Nov 21 2015 - 10:41:55 CST)
  • Mayne, Christopher G (Sat Nov 21 2015 - 09:35:26 CST)
  • Chitrak Gupta (Fri Nov 20 2015 - 20:48:25 CST)
  • Mayne, Christopher G (Thu Nov 19 2015 - 15:23:27 CST)
  • Chitrak Gupta (Wed Nov 18 2015 - 14:31:22 CST)
  • Mayne, Christopher G (Wed Nov 18 2015 - 14:08:51 CST)
  • Chitrak Gupta (Wed Nov 18 2015 - 08:07:57 CST)
• FFTK dihedral scan discontinuities
  • Daniel Fellner (Fri Apr 08 2022 - 01:29:41 CDT)
  • Jérôme Hénin (Fri Aug 27 2021 - 07:35:26 CDT)
  • Daniel Fellner (Thu Aug 26 2021 - 10:18:17 CDT)
• FFTK dihedrals and problematic intermolecular H-bonds
  • LOISON CLAIRE (Tue May 24 2016 - 06:24:43 CDT)
  • JC Gumbart (Sat May 21 2016 - 18:57:07 CDT)
  • Seth Axen (Sat May 21 2016 - 13:45:08 CDT)
  • Mayne, Christopher G (Fri May 20 2016 - 10:11:46 CDT)
  • LOISON CLAIRE (Fri May 20 2016 - 04:29:14 CDT)
• fftk dihedrals error
  • JC Gumbart (Fri Apr 17 2020 - 18:03:45 CDT)
  • JC Gumbart (Sun Apr 12 2020 - 16:03:29 CDT)
  • Andrej Tekel (Sun Apr 12 2020 - 03:32:05 CDT)
• FFTK Dihedrals Opt - Multiplicity modification
  • JC Gumbart (Wed Aug 12 2020 - 14:25:50 CDT)
  • Yasser Almeida-Hernandez (Wed Aug 12 2020 - 09:34:59 CDT)
• FFTK Diherdal Scan error
  • Mayne, Christopher G (Tue Feb 02 2016 - 09:23:36 CST)
  • Soumya Lipsa Rath (Mon Feb 01 2016 - 20:07:49 CST)
  • Mayne, Christopher G (Mon Feb 01 2016 - 19:58:37 CST)
  • Soumya Lipsa Rath (Mon Feb 01 2016 - 18:19:22 CST)
  • Mayne, Christopher G (Mon Feb 01 2016 - 12:34:42 CST)
  • Soumya Lipsa Rath (Mon Feb 01 2016 - 00:27:26 CST)
• ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry
  • Joel Subach (Sat Oct 21 2023 - 07:09:38 CDT)
  • Gumbart, JC (Fri Oct 20 2023 - 16:45:25 CDT)
  • Joel Subach (Fri Oct 20 2023 - 09:39:13 CDT)
  • Joel Subach (Fri Oct 20 2023 - 09:19:14 CDT)
  • Josh (Fri Oct 20 2023 - 09:32:45 CDT)
  • Gumbart, JC (Sun Oct 15 2023 - 11:19:51 CDT)
  • Vermaas, Josh (Sat Oct 14 2023 - 12:15:04 CDT)
  • Joel Subach (Sat Oct 14 2023 - 08:47:54 CDT)
  • Gumbart, JC (Fri Oct 13 2023 - 21:49:24 CDT)
  • Joel Subach (Fri Oct 13 2023 - 06:52:49 CDT)
• ffTK fitting dihedrals
  • Seth Axen (Wed May 18 2016 - 14:04:29 CDT)
  • Mayne, Christopher G (Tue May 17 2016 - 15:45:02 CDT)
  • Seth Axen (Tue May 17 2016 - 13:23:41 CDT)
• FFTK for adjusting partial charge only
  • JC Gumbart (Tue May 29 2012 - 11:08:02 CDT)
  • Francesco Pietra (Tue May 29 2012 - 10:29:53 CDT)
• FFTK for diazonium-modified tyrosine
  • #YEO JINGJIE# (Thu Jan 12 2017 - 09:47:40 CST)
  • JC Gumbart (Sun Jan 08 2017 - 23:08:15 CST)
  • #YEO JINGJIE# (Sun Jan 08 2017 - 11:24:40 CST)
  • JC Gumbart (Sat Jan 07 2017 - 16:36:01 CST)
  • #YEO JINGJIE# (Fri Jan 06 2017 - 15:47:00 CST)
  • JC Gumbart (Fri Jan 06 2017 - 14:52:50 CST)
  • #YEO JINGJIE# (Fri Jan 06 2017 - 12:52:40 CST)
• FFTK Fragment Charge Opt.
  • Daniel Fellner (Wed Jul 22 2020 - 03:46:59 CDT)
• FFTK Gaussian Input Generator - Bug?
  • JC Gumbart (Fri Sep 25 2020 - 17:37:45 CDT)
  • Axel Kohlmeyer (Fri Sep 25 2020 - 17:29:43 CDT)
  • JC Gumbart (Fri Sep 25 2020 - 16:30:18 CDT)
  • Daniel Fellner (Fri Sep 25 2020 - 08:42:57 CDT)
  • JC Gumbart (Fri Sep 25 2020 - 06:39:47 CDT)
  • Daniel Fellner (Fri Sep 25 2020 - 00:54:04 CDT)
  • JC Gumbart (Thu Sep 24 2020 - 23:08:50 CDT)
  • Daniel Fellner (Thu Sep 24 2020 - 21:22:39 CDT)
  • Daniel Fellner (Thu Sep 24 2020 - 20:20:36 CDT)
• FFTK gaussian log
  • JC Gumbart (Mon Aug 07 2017 - 12:23:17 CDT)
  • Laura Joana (Thu Aug 03 2017 - 17:40:27 CDT)
• ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run
  • Jim Parker (Wed Apr 23 2014 - 07:13:37 CDT)
  • JC Gumbart (Tue Apr 08 2014 - 15:05:23 CDT)
  • Mayne, Christopher G (Mon Apr 07 2014 - 12:55:08 CDT)
  • Jim Parker (Fri Apr 04 2014 - 14:32:24 CDT)
  • Mayne, Christopher G (Fri Apr 04 2014 - 11:08:13 CDT)
  • Jim Parker (Fri Apr 04 2014 - 05:42:33 CDT)
• FFTk GUI unresponsive
  • PaweÅ‚ KÄ™dzierski (Wed Jul 28 2021 - 06:05:27 CDT)
  • Gumbart, JC (Tue Jul 27 2021 - 10:42:19 CDT)
  • Hamish Swanson (Thu Jul 22 2021 - 09:30:58 CDT)
• ffTK has halted on error. The optimizer has returned an empty result, indicating an abnormal termination.
  • JC Gumbart (Sat Dec 31 2016 - 22:12:49 CST)
  • JC Gumbart (Wed Dec 28 2016 - 16:52:28 CST)
  • Ern Ong (Mon Dec 26 2016 - 22:31:47 CST)
• ffTK Hessian calculation error outputting to Gaussian input
  • JC Gumbart (Fri Jan 20 2017 - 10:48:13 CST)
  • John Stone (Fri Jan 20 2017 - 10:55:24 CST)
  • Sze May Yee (Fri Jan 20 2017 - 05:02:22 CST)
• ffTK HF/6-31G Base Set QM or a Different QM Base Set?
  • Joel Subach (Sat May 11 2024 - 11:09:14 CDT)
  • Joel Subach (Thu Apr 25 2024 - 10:17:20 CDT)
  • Joel Subach (Thu Apr 25 2024 - 09:39:46 CDT)
  • Josh Vermaas (Thu Apr 25 2024 - 09:23:26 CDT)
  • Joel Subach (Thu Apr 25 2024 - 05:42:29 CDT)
  • Joel Subach (Wed Apr 24 2024 - 09:00:23 CDT)
  • Vermaas, Josh (Wed Apr 24 2024 - 08:35:29 CDT)
  • Joel Subach (Wed Apr 24 2024 - 06:37:51 CDT)
  • Joel Subach (Wed Apr 24 2024 - 05:07:16 CDT)
• fftk Improper fitting
  • Rizal Sinaga (Thu Feb 02 2023 - 18:12:52 CST)
• ffTK in the just released VMD 1.9.1
  • JC Gumbart (Sat Feb 04 2012 - 15:04:05 CST)
• FFTK initial par file is empty
  • Mayne, Christopher G (Thu Sep 03 2015 - 20:07:03 CDT)
  • Chitrak Gupta (Thu Sep 03 2015 - 19:56:00 CDT)
  • Mayne, Christopher G (Thu Sep 03 2015 - 11:20:42 CDT)
  • Chitrak Gupta (Wed Sep 02 2015 - 14:59:12 CDT)
  • Mayne, Christopher G (Wed Sep 02 2015 - 15:29:28 CDT)
  • Mayne, Christopher G (Wed Sep 02 2015 - 13:37:26 CDT)
  • Chitrak Gupta (Wed Sep 02 2015 - 11:05:47 CDT)
• ffTK Inquiry
  • Joel Subach (Tue Mar 14 2023 - 06:32:30 CDT)
  • Vardan Vardanyan (Mon Mar 13 2023 - 21:36:38 CDT)
  • Joel Subach (Mon Mar 13 2023 - 20:28:51 CDT)
• FFTK Issue: Not able to visualize dihedral scan
  • Akash Banerjee (Sun Jan 10 2021 - 08:43:12 CST)
  • Gumbart, JC (Sun Jan 10 2021 - 06:52:25 CST)
  • Akash Banerjee (Fri Jan 08 2021 - 17:41:07 CST)
• FFTK kList no such variable
  • Hamish Swanson (Mon Jul 05 2021 - 12:03:23 CDT)
  • Smith, Harper E. (Mon Jul 05 2021 - 11:01:21 CDT)
  • Gumbart, JC (Mon Jul 05 2021 - 10:25:16 CDT)
  • Hamish Swanson (Mon Jul 05 2021 - 05:49:38 CDT)
• ffTK Load Dihedral Scan Output for Visualization Inquiry
  • Joel Subach (Sun Jul 30 2023 - 07:05:50 CDT)
• FFTK measure bond error
  • Eisenhart, Andrew (eisenhaw) (Mon Nov 07 2016 - 13:33:39 CST)
  • JC Gumbart (Sat Nov 05 2016 - 18:30:33 CDT)
  • Eisenhart, Andrew (eisenhaw) (Wed Nov 02 2016 - 11:27:20 CDT)
  • JC Gumbart (Tue Nov 01 2016 - 14:39:40 CDT)
  • Mayne, Christopher G (Tue Nov 01 2016 - 10:45:28 CDT)
  • JC Gumbart (Mon Oct 31 2016 - 21:38:12 CDT)
  • Eisenhart, Andrew (eisenhaw) (Mon Oct 31 2016 - 13:15:24 CDT)
• FFTK most probably doesn't work with molecules containing new atom types
  • zoran (Mon Dec 15 2014 - 17:13:16 CST)
  • zoran (Mon Dec 15 2014 - 14:28:29 CST)
  • zoran (Sun Dec 14 2014 - 10:20:00 CST)
  • Francesco Pietra (Sun Dec 14 2014 - 03:26:50 CST)
  • zoran (Sat Dec 13 2014 - 18:54:35 CST)
  • Axel Kohlmeyer (Sat Dec 13 2014 - 18:15:42 CST)
  • zoran (Sat Dec 13 2014 - 17:22:16 CST)
  • Francesco Pietra (Sat Dec 13 2014 - 16:44:12 CST)
  • zoran (Sat Dec 13 2014 - 16:04:25 CST)
  • Axel Kohlmeyer (Sat Dec 13 2014 - 15:15:52 CST)
  • Josh Vermaas (Sat Dec 13 2014 - 13:54:38 CST)
  • zoran (Sat Dec 13 2014 - 06:50:49 CST)
• ffTK Opt Torsions .log file input Inquiry
  • Joel Subach (Tue Feb 20 2024 - 06:15:00 CST)
  • Joel Subach (Sun Jun 25 2023 - 06:20:01 CDT)
  • Joel Subach (Thu Jun 22 2023 - 07:43:40 CDT)
• FFTK Opt Torsions MM Trajectory
  • Daniel Fellner (Wed Jul 15 2020 - 07:11:20 CDT)
• ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM
  • Joel Subach (Tue Mar 28 2023 - 19:33:46 CDT)
  • Gumbart, JC (Tue Mar 28 2023 - 19:31:17 CDT)
  • Joel Subach (Tue Mar 28 2023 - 19:30:06 CDT)
  • Gumbart, JC (Tue Mar 28 2023 - 18:54:11 CDT)
  • Joel Subach (Tue Mar 28 2023 - 18:28:01 CDT)
  • Gumbart, JC (Tue Mar 28 2023 - 18:04:16 CDT)
  • Gumbart, JC (Tue Mar 28 2023 - 18:06:57 CDT)
  • Joel Subach (Mon Mar 27 2023 - 07:25:41 CDT)
• ffTK Opt Torsions Refine Section i.e. PERIODICITY, PHASE SHIFT Values?
  • Joel Subach (Tue Oct 24 2023 - 10:40:24 CDT)
  • Josh (Mon Oct 23 2023 - 07:51:12 CDT)
  • Joel Subach (Sun Oct 22 2023 - 07:21:10 CDT)
• ffTK Opt Torsions Tab Hysteresis Problem in the QM Calculation Inquiry or Phase Periodicity error?
  • Joel Subach (Tue Feb 20 2024 - 06:06:29 CST)
  • Joel Subach (Thu Oct 26 2023 - 11:09:03 CDT)
• FFTK Opt Torsions: can not find channel named ""
  • Almeida-Hernández, Yasser, Dr. (Tue Sep 29 2020 - 11:49:53 CDT)
  • JC Gumbart (Tue Sep 29 2020 - 11:41:11 CDT)
  • Almeida-Hernández, Yasser, Dr. (Tue Sep 29 2020 - 04:25:09 CDT)
  • Almeida-Hernández, Yasser, Dr. (Mon Sep 28 2020 - 05:45:50 CDT)
• ffTK Opt. Charge Run Optimization Error PSF File Problem INQUIRY
  • Joel Subach (Mon Feb 05 2024 - 11:32:15 CST)
  • Joel Subach (Mon Feb 05 2024 - 11:39:02 CST)
  • Vermaas, Josh (Mon Feb 05 2024 - 09:25:25 CST)
  • Joel Subach (Sat Feb 03 2024 - 08:36:02 CST)
• ffTK Opt. Charge Run QM Target Data WATER INTERACTION ENERGY DATA INQUIRY
  • Joel Subach (Fri Feb 09 2024 - 11:47:09 CST)
  • Joel Subach (Tue Feb 06 2024 - 09:43:16 CST)
• fftk Opt. Charges
  • Prof. Eddie (Thu Jun 27 2013 - 16:12:27 CDT)
  • Bennion, Brian (Thu Jun 27 2013 - 15:56:52 CDT)
  • Bennion, Brian (Thu Jun 27 2013 - 14:53:35 CDT)
  • Prof. Eddie (Thu Jun 27 2013 - 14:37:15 CDT)
  • Prof. Eddie (Wed Jun 19 2013 - 13:16:20 CDT)
  • Mayne, Christopher G (Wed Jun 19 2013 - 10:53:43 CDT)
  • Prof. Eddie (Wed Jun 19 2013 - 08:50:47 CDT)
  • Bennion, Brian (Tue Jun 18 2013 - 17:47:56 CDT)
  • Prof. Eddie (Tue Jun 18 2013 - 16:47:25 CDT)
• FFTK Opt.Bonded error: unmatched open quote in list
  • Gumbart, JC (Mon May 23 2022 - 17:33:14 CDT)
  • Zakaria Bouchouireb (Tue May 10 2022 - 03:14:24 CDT)
• FFTK OptCharges
  • Mayne, Christopher G (Mon Jun 04 2012 - 13:45:14 CDT)
  • Francesco Pietra (Mon Jun 04 2012 - 13:28:23 CDT)
  • Mayne, Christopher G (Mon Jun 04 2012 - 09:41:59 CDT)
  • Francesco Pietra (Mon Jun 04 2012 - 04:10:40 CDT)
• fftk optimization of bonded parameters + Error: missing close-bracket
  • AnkiReddy katha (Thu Oct 31 2013 - 03:20:50 CDT)
  • Mayne, Christopher G (Wed Oct 30 2013 - 07:42:33 CDT)
  • AnkiReddy katha (Wed Oct 30 2013 - 03:08:57 CDT)
• ffTK Parameter Selection i.e. just Scan and Opt Torsion Selection Viable?
  • Joel Subach (Tue Feb 20 2024 - 07:33:37 CST)
  • PaweÅ‚ KÄ™dzierski (Tue Feb 20 2024 - 07:29:39 CST)
  • Ebru Çetin (Tue Feb 20 2024 - 07:03:03 CST)
  • Joel Subach (Tue Feb 20 2024 - 06:09:32 CST)
  • Joel Subach (Wed Oct 18 2023 - 06:13:50 CDT)
• FFTK Parameterization of Halogenated Molecule
  • Pang, Yui Tik (Fri May 06 2022 - 12:08:43 CDT)
  • Pang, Yui Tik (Fri May 06 2022 - 10:00:10 CDT)
  • Bassam Haddad (Thu May 05 2022 - 11:24:24 CDT)
• FFTK partial charges against water
  • Francesco Pietra (Wed Jul 24 2013 - 08:32:42 CDT)
• FFTK plugin, Water Inter issue
  • Francesco Pietra (Tue Mar 26 2013 - 12:15:00 CDT)
• FFTK plugin: domain error: argument not in valid range
  • Mayne, Christopher G (Sat Dec 09 2017 - 12:56:18 CST)
  • JC Gumbart (Sat Dec 09 2017 - 07:33:39 CST)
  • David Fischermeier (Sat Dec 09 2017 - 05:32:50 CST)
  • David Fischermeier (Fri Dec 08 2017 - 06:14:49 CST)
• FFTK plugin: in which order should the components be run?
  • Mayne, Christopher G (Tue May 22 2012 - 11:00:41 CDT)
  • Wang Yi (Mon May 21 2012 - 08:47:10 CDT)
  • Francesco Pietra (Mon May 21 2012 - 04:20:58 CDT)
• FFTK Possible Bug
  • Mayne, Christopher G (Sun Mar 03 2019 - 22:03:55 CST)
  • Vermaas, Joshua (Sun Mar 03 2019 - 05:18:15 CST)
  • McGuire, Kelly (Sun Mar 03 2019 - 01:29:37 CST)
  • Robin Betz (Sat Mar 02 2019 - 23:15:39 CST)
  • McGuire, Kelly (Sat Mar 02 2019 - 20:55:31 CST)
  • McGuire, Kelly (Sat Mar 02 2019 - 22:00:33 CST)
  • McGuire, Kelly (Sat Mar 02 2019 - 20:28:38 CST)
• fftk problem - opt_bonded
  • Mayne, Christopher G (Mon Dec 08 2014 - 08:28:13 CST)
  • zoran (Mon Dec 08 2014 - 06:39:38 CST)
• fftk problem in opt. bonded step
  • John Stone (Mon Dec 17 2018 - 09:42:20 CST)
  • Nicolás Veiga (Sun Dec 16 2018 - 13:38:09 CST)
  • Mayne, Christopher G (Sun Dec 16 2018 - 12:53:17 CST)
  • Gumbart, JC (Fri Dec 14 2018 - 18:04:17 CST)
  • Gumbart, JC (Fri Dec 14 2018 - 16:51:59 CST)
  • Nicolás Veiga (Fri Dec 14 2018 - 14:57:59 CST)
• ffTK problem: initial parameter file is void of atoms!
  • Mayne, Christopher G (Mon Oct 20 2014 - 14:19:29 CDT)
  • Zeinab Emami (Mon Oct 20 2014 - 14:27:30 CDT)
  • Zeinab Emami (Mon Oct 20 2014 - 14:15:16 CDT)
  • Zeinab Emami (Mon Oct 20 2014 - 14:14:23 CDT)
  • Mayne, Christopher G (Mon Oct 20 2014 - 13:05:04 CDT)
  • Zeinab Emami (Mon Oct 20 2014 - 12:44:19 CDT)
  • Zeinab Emami (Mon Oct 20 2014 - 11:34:17 CDT)
• ffTK problem: OPT.Charges
  • Zeinab Emami (Fri Nov 07 2014 - 11:13:04 CST)
  • Mayne, Christopher G (Fri Nov 07 2014 - 10:51:57 CST)
  • Zeinab Emami (Fri Nov 07 2014 - 09:14:15 CST)
• ffTK problems with Gaussian OPT
  • Francesco Pietra (Sun Aug 16 2015 - 05:43:43 CDT)
• FFTK question regarding dihedral fitting
  • Mayne, Christopher G (Fri Jul 26 2013 - 02:56:21 CDT)
  • Daniel Klose (Fri Jul 26 2013 - 01:29:14 CDT)
• FFTK scan torsions aromatics
  • Mayne, Christopher G (Fri Dec 06 2013 - 14:27:18 CST)
  • Christian Jorgensen (Fri Dec 06 2013 - 11:12:48 CST)
  • Francesco Pietra (Tue Jul 23 2013 - 02:14:14 CDT)
• ffTK Scan Torsions Generate Dihedral Scan Input OUTPUT Inquiry
  • Joel Subach (Mon Jun 19 2023 - 09:50:49 CDT)
• FFTK scan torsions MP2 vs RHF
  • Mayne, Christopher G (Wed Jul 24 2013 - 04:22:18 CDT)
  • Francesco Pietra (Mon Jul 22 2013 - 11:24:55 CDT)
• FFTK scan torsions question
  • Elena Lilkova (Tue Feb 17 2015 - 10:07:10 CST)
  • Mayne, Christopher G (Tue Feb 17 2015 - 09:14:49 CST)
  • Josh Vermaas (Tue Feb 17 2015 - 08:50:02 CST)
  • Elena Lilkova (Tue Feb 17 2015 - 07:46:06 CST)
• ffTK Scan Torsions Scan +/-and Step Size Inquiry which are Best Values?
  • Joel Subach (Fri Oct 27 2023 - 11:12:38 CDT)
• FFTK segmentation fault when guessing charge groups
  • Pang, Yui Tik (Tue Dec 07 2021 - 15:12:20 CST)
  • Pang, Yui Tik (Fri Dec 03 2021 - 09:05:49 CST)
  • Gumbart, JC (Fri Dec 03 2021 - 07:07:48 CST)
  • Bassam Haddad (Fri Dec 03 2021 - 07:09:39 CST)
  • Bassam Haddad (Fri Dec 03 2021 - 02:35:30 CST)
• fftk source code
  • Mayne, Christopher G (Wed Apr 10 2013 - 13:14:50 CDT)
  • Axel Kohlmeyer (Wed Apr 10 2013 - 03:08:35 CDT)
  • Francesco Pietra (Wed Apr 10 2013 - 01:05:13 CDT)
• FFTK sulfur ChargeOpt
  • Daniel Fellner (Wed Jun 24 2020 - 22:36:42 CDT)
  • JC Gumbart (Mon Jun 22 2020 - 19:13:54 CDT)
  • Daniel Fellner (Mon Jun 22 2020 - 02:09:39 CDT)
  • Daniel Fellner (Fri Jun 19 2020 - 21:55:53 CDT)
  • Daniel Fellner (Fri Jun 19 2020 - 19:37:01 CDT)
  • JC Gumbart (Fri Jun 19 2020 - 19:42:54 CDT)
  • JC Gumbart (Fri Jun 19 2020 - 18:01:44 CDT)
  • Daniel Fellner (Fri Jun 19 2020 - 17:52:54 CDT)
  • JC Gumbart (Fri Jun 19 2020 - 15:08:14 CDT)
  • Daniel Fellner (Thu Jun 18 2020 - 23:17:42 CDT)
• ffTK Tabs for Just Dihedral Optimization Can I Just Use Scan and Opt Tabs Inquiry?
  • Joel Subach (Tue Feb 20 2024 - 06:04:23 CST)
  • Joel Subach (Fri Oct 27 2023 - 11:18:02 CDT)
• ffTK torsion scan?
  • Gumbart, JC (Thu Feb 18 2021 - 18:12:36 CST)
  • Smith, Harper E. (Mon Feb 15 2021 - 15:50:41 CST)
  • Gumbart, JC (Mon Feb 15 2021 - 09:55:07 CST)
  • Smith, Harper E. (Thu Feb 11 2021 - 18:30:51 CST)
• FFTK Tutorial Charge Opt Question
  • João Ribeiro (Mon May 21 2018 - 13:47:15 CDT)
  • McGuire, Kelly (Mon May 21 2018 - 12:44:05 CDT)
  • Vermaas, Joshua (Mon May 21 2018 - 12:05:26 CDT)
  • McGuire, Kelly (Mon May 21 2018 - 11:11:40 CDT)
  • João Ribeiro (Mon May 21 2018 - 09:45:36 CDT)
  • McGuire, Kelly (Sat May 19 2018 - 21:31:37 CDT)
  • Vermaas, Joshua (Sat May 19 2018 - 15:26:15 CDT)
  • McGuire, Kelly (Sat May 19 2018 - 14:21:07 CDT)
  • Vermaas, Joshua (Sat May 19 2018 - 13:43:41 CDT)
  • McGuire, Kelly (Fri May 18 2018 - 23:59:48 CDT)
• FFTK Update Parameter File with Optimized Parameters - fails?
  • Mayne, Christopher G (Thu Mar 28 2013 - 08:03:11 CDT)
  • PaweÅ‚ KÄ™dzierski (Thu Mar 28 2013 - 06:26:15 CDT)
• ffTk user feature request
  • Maxim Belkin (Fri Apr 04 2014 - 11:05:19 CDT)
  • Mayne, Christopher G (Fri Apr 04 2014 - 10:40:13 CDT)
  • John Stone (Fri Apr 04 2014 - 09:26:32 CDT)
  • Jim Parker (Fri Apr 04 2014 - 05:58:57 CDT)
• fftk using Terachem?
  • Tristan Croll (Thu Oct 29 2015 - 18:42:53 CDT)
  • Mayne, Christopher G (Thu Oct 29 2015 - 07:59:31 CDT)
  • Tristan Croll (Wed Oct 28 2015 - 20:25:55 CDT)
• ffTK vmd Index Atom Numbering via ORCA .inp and .out Files Inquiry
  • Joel Subach (Wed Dec 13 2023 - 04:30:37 CST)
  • Joel Subach (Wed Dec 13 2023 - 03:46:25 CST)
• FFTK VMD plugin issue (arising from VECSCALE TCL issues of either NAMD or VMD ?)
  • Mayne, Christopher G (Tue Jun 05 2012 - 13:27:13 CDT)
  • Francesco Pietra (Tue Jun 05 2012 - 12:54:05 CDT)
  • JC Gumbart (Tue Jun 05 2012 - 09:22:10 CDT)
  • Francesco Pietra (Tue Jun 05 2012 - 02:16:40 CDT)
• fftk wat. opt. when charges overlap
  • Pawel Kedzierski (Tue Mar 09 2021 - 11:19:20 CST)
  • Prof. Eddie (Tue Mar 09 2021 - 08:28:34 CST)
  • Pawel Kedzierski (Tue Mar 09 2021 - 05:51:15 CST)
  • Jason Smith (Mon Mar 08 2021 - 11:04:23 CST)
  • Prof. Eddie (Mon Mar 08 2021 - 08:46:07 CST)
• ffTK Water Int Tab .inp File Flipping a Waters Coordinates Inquiry
  • Joel Subach (Mon Jul 15 2024 - 09:09:18 CDT)
  • Joel Subach (Sun Jul 14 2024 - 12:19:46 CDT)
• ffTK Water Int Tab Optimization INTERACTION DISTANCE INQUIRY
  • Joel Subach (Mon Jul 08 2024 - 12:04:35 CDT)
  • PaweÅ‚ KÄ™dzierski (Mon Jul 08 2024 - 04:51:34 CDT)
  • Joel Subach (Mon Jul 08 2024 - 03:47:52 CDT)
  • PaweÅ‚ KÄ™dzierski (Mon Jul 08 2024 - 01:38:32 CDT)
  • Joel Subach (Sun Jul 07 2024 - 05:35:12 CDT)
• FFTK Water Interaction
  • Mayne, Christopher G (Fri Apr 05 2019 - 17:32:33 CDT)
  • mariano spivak (Fri Mar 29 2019 - 09:17:25 CDT)
  • McGuire, Kelly (Fri Mar 29 2019 - 00:48:51 CDT)
  • McGuire, Kelly (Thu Mar 28 2019 - 15:30:56 CDT)
  • mariano spivak (Thu Mar 28 2019 - 09:25:13 CDT)
  • McGuire, Kelly (Wed Mar 27 2019 - 23:57:34 CDT)
  • Mayne, Christopher G (Thu Sep 10 2015 - 13:41:26 CDT)
  • Chitrak Gupta (Thu Sep 10 2015 - 12:39:01 CDT)
  • Mayne, Christopher G (Wed Sep 09 2015 - 09:12:58 CDT)
  • Chitrak Gupta (Wed Sep 09 2015 - 08:17:50 CDT)
  • Chitrak Gupta (Tue Sep 08 2015 - 14:57:55 CDT)
  • Mayne, Christopher G (Tue Sep 08 2015 - 15:10:03 CDT)
  • Mayne, Christopher G (Tue Sep 08 2015 - 12:48:50 CDT)
  • Chitrak Gupta (Tue Sep 08 2015 - 10:54:19 CDT)
• fftk water interaction questions
  • Bennion, Brian (Tue Apr 21 2015 - 16:09:46 CDT)
  • Pawel Kedzierski (Tue Apr 21 2015 - 03:04:32 CDT)
  • Bennion, Brian (Mon Apr 20 2015 - 14:18:45 CDT)
• ffTK Water Interactions Ligand Atom Hydrogen Bond Acceptors Acting as Donors Inquiry
  • Joel Subach (Thu Dec 14 2023 - 06:19:45 CST)
• FFTK water molecules overlapped and charge optimisation error
  • Joel Subach (Tue Jul 23 2024 - 02:18:55 CDT)
  • Gumbart, JC (Sun Jul 21 2024 - 22:13:21 CDT)
  • MARIA MILANESI (Mon Jul 15 2024 - 04:06:27 CDT)
• FFTK work's with molecules containing new atom types
  • zoran (Tue Dec 16 2014 - 09:42:00 CST)
  • Francesco Pietra (Tue Dec 16 2014 - 09:56:42 CST)
  • Francesco Pietra (Tue Dec 16 2014 - 01:21:43 CST)
  • zoran (Mon Dec 15 2014 - 17:57:28 CST)
• fftk, charge optimization, fragmentation
  • Ernesto Aleksei Delgado Hurtado (Thu Jan 19 2023 - 18:09:44 CST)
  • Vardan Vardanyan (Thu Jan 19 2023 - 13:39:33 CST)
• FFTk, dihedral optimization
  • Mayne, Christopher G (Sat Jul 29 2017 - 09:43:05 CDT)
  • Mayne, Christopher G (Sat Jul 29 2017 - 10:10:51 CDT)
  • RAHUL SURESH (Sat Jul 29 2017 - 10:04:57 CDT)
  • RAHUL SURESH (Sat Jul 29 2017 - 02:45:46 CDT)
• fftk, ORCA, Bond and Angle Optimization, error As a subsequent Frequencies calculation has been requested
  • Joel Subach (Thu Jul 25 2024 - 13:05:15 CDT)
  • Gumbart, JC (Thu Jul 25 2024 - 12:46:36 CDT)
  • Vardan Vardanyan (Tue Jul 23 2024 - 15:29:09 CDT)
• FFTK, pyrrolidine parametrization bonded parameters- issue with Hessian
  • JC Gumbart (Tue Oct 22 2013 - 10:23:45 CDT)
  • AnkiReddy katha (Tue Oct 22 2013 - 06:59:59 CDT)
  • JC Gumbart (Fri Oct 18 2013 - 13:28:42 CDT)
  • JC Gumbart (Thu Oct 17 2013 - 06:32:24 CDT)
  • AnkiReddy katha (Thu Oct 17 2013 - 02:44:02 CDT)
• FFTK, recognize wildcard atom types in forcefields
  • JC Gumbart (Sat Mar 24 2018 - 08:56:35 CDT)
  • Bryan Roessler (Fri Mar 23 2018 - 19:38:06 CDT)
• FFTK, regarding
  • Vermaas, Joshua (Mon Dec 18 2017 - 11:34:17 CST)
  • Suresh Ghimire (Sun Dec 17 2017 - 01:34:20 CST)
  • RAHUL SURESH (Sat Dec 16 2017 - 00:12:31 CST)
  • Vermaas, Joshua (Fri Dec 15 2017 - 12:25:57 CST)
  • Giacomo Fiorin (Fri Dec 15 2017 - 09:07:26 CST)
  • RAHUL SURESH (Fri Dec 15 2017 - 05:45:54 CST)
  • JC Gumbart (Sun Oct 01 2017 - 07:15:49 CDT)
  • RAHUL SURESH (Sun Oct 01 2017 - 02:22:19 CDT)
  • RAHUL SURESH (Mon Jul 31 2017 - 05:13:44 CDT)
  • RAHUL SURESH (Sat Jul 29 2017 - 03:15:46 CDT)
• fftk-bonded-opt problem
  • zoran (Thu Dec 11 2014 - 03:30:25 CST)
• fftk-charges
  • rodolfo gonzalez (Tue Oct 22 2013 - 09:33:02 CDT)
  • Mayne, Christopher G (Tue Oct 22 2013 - 08:00:11 CDT)
  • rodolfo gonzalez (Tue Oct 22 2013 - 05:26:31 CDT)
  • Mayne, Christopher G (Mon Oct 21 2013 - 18:20:04 CDT)
  • Josh Vermaas (Mon Oct 21 2013 - 14:50:44 CDT)
  • rodolfo gonzalez (Mon Oct 21 2013 - 10:43:01 CDT)
  • rodolfo gonzalez (Mon Oct 21 2013 - 01:57:55 CDT)
  • rodolfo gonzalez (Sun Oct 20 2013 - 10:00:50 CDT)
• FFTK-Opt.Bonded-empty string error_VMD1.9.2Beta
  • Mayne, Christopher G (Thu Dec 04 2014 - 16:53:13 CST)
  • Mayne, Christopher G (Wed Nov 26 2014 - 02:44:58 CST)
  • SEZEN VATANSEVER (Thu Nov 20 2014 - 06:23:43 CST)
  • Mayne, Christopher G (Mon Nov 17 2014 - 13:43:48 CST)
  • Zeinab Emami (Wed Nov 12 2014 - 13:08:47 CST)
  • Mayne, Christopher G (Wed Nov 12 2014 - 08:04:11 CST)
  • Ashar Malik (Wed Nov 12 2014 - 06:51:52 CST)
  • SEZEN VATANSEVER (Wed Nov 12 2014 - 04:40:59 CST)
• FFTK-optimization error
  • Mayne, Christopher G (Fri May 22 2015 - 10:21:44 CDT)
• fftk-Tutorial Writing psf and pdb files from a CGenFF .str File Inquiry
  • Joel Subach (Fri Apr 07 2023 - 11:35:41 CDT)
  • Joel Subach (Fri Apr 07 2023 - 07:24:56 CDT)
• FFTK... and now gaussian version or QMtool problem
  • Mayne, Christopher G (Thu Mar 28 2013 - 20:52:28 CDT)
  • PaweÅ‚ KÄ™dzierski (Thu Mar 28 2013 - 19:23:45 CDT)
  • Mayne, Christopher G (Thu Mar 28 2013 - 11:13:33 CDT)
  • John Stone (Thu Mar 28 2013 - 09:34:50 CDT)
  • PaweÅ‚ KÄ™dzierski (Thu Mar 28 2013 - 09:25:50 CDT)
• FFTK: bond and angle parameters
  • Mayne, Christopher G (Wed Apr 16 2014 - 09:44:19 CDT)
  • denilson_at_dqi.ufla.br (Mon Apr 07 2014 - 14:42:28 CDT)
• FFTK: Charge Optimisation partial charges
  • Daniel Fellner (Wed Jun 10 2020 - 07:01:37 CDT)
  • JC Gumbart (Wed Jun 10 2020 - 06:44:05 CDT)
  • JC Gumbart (Wed Jun 10 2020 - 06:19:28 CDT)
  • JC Gumbart (Tue Jun 09 2020 - 12:33:39 CDT)
  • Daniel Fellner (Mon Jun 08 2020 - 23:15:15 CDT)
• ffTK: Charge optimization
  • Mayne, Christopher G (Wed Sep 23 2015 - 09:36:08 CDT)
  • Amy Rice (Tue Sep 22 2015 - 11:26:48 CDT)
  • Mayne, Christopher G (Thu Sep 17 2015 - 16:21:12 CDT)
  • Amy Rice (Thu Sep 17 2015 - 14:39:05 CDT)
• FFTK: Charge Optimization (Water Int.)
  • Aleksei (Thu May 28 2020 - 01:39:15 CDT)
  • Daniel Fellner (Sun May 24 2020 - 21:24:40 CDT)
  • Aleksei (Fri May 22 2020 - 11:50:36 CDT)
  • Daniel Fellner (Fri May 22 2020 - 01:24:18 CDT)
• ffTK: COLP (Charge Optimization Log Plotter)
  • Mayne, Christopher G (Sat Nov 08 2014 - 11:14:15 CST)
  • Zeinab Emami (Sat Nov 08 2014 - 10:07:14 CST)
• FFTK: dihedral containing hydrogen?
  • Gumbart, JC (Tue May 18 2021 - 19:03:04 CDT)
  • Smith, Harper E. (Tue May 18 2021 - 15:42:21 CDT)
• FFTK: Dihedral scan trans/cis
  • Gumbart, JC (Mon Mar 22 2021 - 22:48:09 CDT)
  • Daniel Fellner (Sun Mar 21 2021 - 06:28:55 CDT)
• fftk: domain error: argument not in valid range
  • Mayne, Christopher G (Tue Jul 10 2012 - 08:57:56 CDT)
  • Ф¸»¹ó (Tue Jul 10 2012 - 03:30:31 CDT)
• FFTk: donor water escape during optimization
  • Mayne, Christopher G (Tue May 05 2015 - 09:41:16 CDT)
  • Michetti Davide (Tue May 05 2015 - 03:48:42 CDT)
  • Mayne, Christopher G (Mon May 04 2015 - 11:38:43 CDT)
  • Michetti Davide (Mon May 04 2015 - 08:49:46 CDT)
• FFTK: Error when optimizing charges
  • Mayne, Christopher G (Thu Feb 06 2014 - 11:51:34 CST)
  • Mayne, Christopher G (Thu Feb 06 2014 - 09:29:04 CST)
  • Shane.OMahony (Thu Feb 06 2014 - 08:10:00 CST)
• ffTK: How to determine the optimized bond and angle parameters
  • JC Gumbart (Thu Nov 17 2016 - 11:56:18 CST)
  • Ern.Ong_at_student.adfa.edu.au (Thu Nov 17 2016 - 03:38:59 CST)
  • JC Gumbart (Mon Nov 14 2016 - 23:20:09 CST)
  • Ern Ong (Mon Nov 14 2016 - 23:32:47 CST)
  • Ern Ong (Sun Nov 13 2016 - 02:43:12 CST)
• ffTK: neutral pyruvate group and charged pyruvate group at beta-D-mannose
  • Mayne, Christopher G (Thu Jul 27 2017 - 22:52:49 CDT)
  • Ern Ong (Wed Jul 26 2017 - 01:37:37 CDT)
  • Ern Ong (Wed Jul 26 2017 - 01:40:49 CDT)
• FFTK: Obj value in bond optimization
  • Mayne, Christopher G (Mon Mar 07 2016 - 12:24:58 CST)
  • Soumya Lipsa Rath (Wed Mar 02 2016 - 20:36:04 CST)
• FFTK: Opt Bonded error
  • Mayne, Christopher G (Thu Sep 11 2014 - 11:17:17 CDT)
• FFTK: Opt. Charges Error
  • Gumbart, JC (Sun May 31 2020 - 15:20:52 CDT)
  • Daniel Fellner (Sat May 30 2020 - 20:33:32 CDT)
  • Gumbart, JC (Sat May 30 2020 - 11:48:23 CDT)
  • Gumbart, JC (Sat May 30 2020 - 11:49:45 CDT)
  • Daniel Fellner (Sat May 30 2020 - 02:58:43 CDT)
• fftk: prepare from CGENFF and improper
  • Mayne, Christopher G (Fri Oct 16 2015 - 09:58:51 CDT)
  • fvlieffe (Fri Oct 16 2015 - 08:01:49 CDT)
• FFTK: Running optimizations in batch?
  • Mayne, Christopher G (Wed Mar 25 2015 - 23:38:03 CDT)
  • Amira Yu (Wed Mar 25 2015 - 22:09:15 CDT)
• FFTK: Water Interactions, Steric Clashes
  • Emma Wu (Wed Oct 07 2020 - 23:20:54 CDT)
  • Daniel Fellner (Tue Oct 06 2020 - 22:51:15 CDT)
  • Emma Wu (Tue Oct 06 2020 - 22:13:31 CDT)
• FFTK: What is the correct charge calculation setup for carbonyl compounds
  • JC Gumbart (Thu Feb 20 2020 - 08:10:32 CST)
  • Giacomo Fiorin (Wed Feb 19 2020 - 10:47:26 CST)
  • David Sáez (Wed Feb 19 2020 - 10:06:54 CST)
• fglrx driver workaround?
  • John Stone (Wed May 18 2005 - 11:15:59 CDT)
  • John Stone (Wed May 18 2005 - 11:03:36 CDT)
  • Gyimesi Gergely (Tue May 17 2005 - 14:19:07 CDT)
  • Sabuj Pattanayek (Tue May 17 2005 - 14:15:47 CDT)
  • John Stone (Mon May 16 2005 - 19:51:04 CDT)
  • Gyimesi Gergely (Sun May 15 2005 - 10:16:08 CDT)
  • Alec Robertson (Thu Mar 31 2005 - 10:18:45 CST)
  • John Stone (Thu Mar 31 2005 - 10:12:55 CST)
  • Alec Robertson (Thu Mar 31 2005 - 09:53:21 CST)
• FieldLines
  • John Stone (Wed Feb 13 2008 - 14:34:04 CST)
  • Axel Kohlmeyer (Tue Feb 12 2008 - 09:53:36 CST)
  • Mary Karpen (Tue Feb 12 2008 - 07:34:42 CST)
• fiiting
  • Justin Gullingsrud (Mon May 27 2002 - 12:25:44 CDT)
  • Justin Gullingsrud (Mon May 27 2002 - 10:24:14 CDT)
  • Vlad Cojocaru (Mon May 27 2002 - 09:30:59 CDT)
• file "top_all22_prot.inp"
  • Axel Kohlmeyer (Wed Feb 07 2007 - 09:49:39 CST)
  • Hai-Jun Su (Tue Feb 06 2007 - 20:26:53 CST)
• File as video
  • Bjoern Olausson (Tue Jul 05 2011 - 03:33:13 CDT)
  • sajad falsafi (Tue Jul 05 2011 - 03:25:15 CDT)
  • safron saif (Tue Jul 05 2011 - 00:02:36 CDT)
• file bigger than 2GB
  • John Stone (Thu Jun 01 2006 - 12:44:28 CDT)
  • snoze pa (Thu Jun 01 2006 - 10:35:04 CDT)
• File conversion for from Amber to Charmm
  • Axel Kohlmeyer (Mon Jul 20 2009 - 08:54:41 CDT)
  • Yogesh Aher (Mon Jul 20 2009 - 07:22:21 CDT)
  • Axel Kohlmeyer (Fri Jul 17 2009 - 10:14:24 CDT)
  • Axel Kohlmeyer (Fri Jul 17 2009 - 07:23:35 CDT)
  • Yogesh Aher (Fri Jul 17 2009 - 04:34:55 CDT)
• File Format
  • John Stone (Wed Apr 10 2019 - 17:30:55 CDT)
  • McGuire, Kelly (Wed Apr 10 2019 - 17:25:55 CDT)
  • John Stone (Wed Apr 10 2019 - 17:23:25 CDT)
  • McGuire, Kelly (Wed Apr 10 2019 - 16:41:34 CDT)
  • McGuire, Kelly (Wed Apr 10 2019 - 16:21:43 CDT)
  • John Stone (Wed Apr 10 2019 - 15:54:50 CDT)
  • McGuire, Kelly (Wed Apr 10 2019 - 15:15:17 CDT)
• File format of DCD Trajectory file
  • Izrailev, Sergei (Tue Sep 30 2003 - 11:21:35 CDT)
  • John Stone (Mon Sep 29 2003 - 10:53:21 CDT)
  • FUNG WAI KEUNG (Mon Sep 29 2003 - 01:10:13 CDT)
• file format of VMD
  • John Stone (Wed May 29 2013 - 09:13:27 CDT)
  • Reza Md. (Tue May 28 2013 - 09:19:19 CDT)
• file output issue
  • Karl Lundquist (Mon May 19 2014 - 11:15:28 CDT)
  • John Stone (Fri May 16 2014 - 10:15:20 CDT)
  • Karl Lundquist (Thu May 15 2014 - 14:13:58 CDT)
• File owner/group settings after installing precompiled VMD.
  • John Stone (Thu Dec 17 2009 - 00:24:11 CST)
  • Rob (Mon Dec 14 2009 - 21:13:23 CST)
• File patterns
  • Justin Gullingsrud (Tue May 30 2000 - 14:00:15 CDT)
  • Luis Gracia (Tue May 30 2000 - 09:58:38 CDT)
• File Reader Plugin Issues
  • John Stone (Mon Jul 19 2004 - 10:07:45 CDT)
  • Olaf Lenz (Mon Jul 19 2004 - 06:14:29 CDT)
  • John Stone (Fri Jul 16 2004 - 10:31:22 CDT)
  • Olaf Lenz (Fri Jul 16 2004 - 09:40:33 CDT)
• File Selector in VMD1.6a1
  • John Stone (Wed Sep 13 2000 - 23:15:21 CDT)
  • Surjit Dixit (Wed Sep 13 2000 - 12:03:45 CDT)
• File size limits
  • John Stone (Thu Aug 11 2005 - 09:57:11 CDT)
  • Jayendra Balasubramanian (Thu Aug 11 2005 - 09:53:44 CDT)
• file splitting
  • Axel Kohlmeyer (Thu May 17 2012 - 11:11:00 CDT)
  • Grace Brannigan (Thu May 17 2012 - 10:40:25 CDT)
  • Axel Kohlmeyer (Thu May 17 2012 - 07:34:47 CDT)
  • P.-L. Chau (Thu May 17 2012 - 07:42:58 CDT)
  • P.-L. Chau (Thu May 17 2012 - 03:19:50 CDT)
• File to benchmark a new GPU system
  • John Stone (Mon Jul 27 2009 - 16:39:45 CDT)
  • Axel Kohlmeyer (Sun Jul 26 2009 - 20:07:37 CDT)
  • luc Renambot (Sun Jul 26 2009 - 18:52:30 CDT)
  • Axel Kohlmeyer (Sun Jul 26 2009 - 18:22:59 CDT)
  • luc Renambot (Sun Jul 26 2009 - 16:20:28 CDT)
• file type specification question
  • John Stone (Mon Apr 19 2004 - 18:06:03 CDT)
  • John Stone (Sun Apr 18 2004 - 19:44:40 CDT)
  • Kooser, Ara S (Fri Apr 16 2004 - 10:50:39 CDT)
  • John Stone (Tue Apr 13 2004 - 16:05:56 CDT)
  • Kooser, Ara S (Tue Apr 13 2004 - 16:08:35 CDT)
  • Kooser, Ara S (Tue Apr 13 2004 - 15:04:55 CDT)
  • John Stone (Tue Apr 13 2004 - 14:23:17 CDT)
  • Kooser, Ara S (Fri Apr 09 2004 - 10:37:32 CDT)
  • Lubos Vrbka (Fri Apr 09 2004 - 09:35:19 CDT)
  • John Stone (Thu Apr 08 2004 - 16:53:04 CDT)
  • John Stone (Wed Apr 07 2004 - 15:32:42 CDT)
  • Lubos Vrbka (Wed Apr 07 2004 - 11:12:56 CDT)
• file.dat and file.out from AMBER
  • Martina Devi (Sat Jul 15 2017 - 01:13:10 CDT)
• files
  • Lars Burgdorf (Fri Dec 08 2000 - 13:57:33 CST)
  • John Stone (Fri Dec 08 2000 - 12:40:43 CST)
  • Zachariah Sinkala (Fri Dec 08 2000 - 11:50:31 CST)
• Files closing/Memory issues in VMD
  • John Stone (Mon Feb 19 2007 - 17:30:16 CST)
  • Alexander Balaeff (Mon Feb 19 2007 - 14:03:54 CST)
• files for air
  • Axel Kohlmeyer (Fri May 11 2007 - 07:46:23 CDT)
  • SMAHANE CHALABI (Fri May 11 2007 - 04:01:27 CDT)
• Files not written during OptiX ray tracing
  • John Stone (Tue Jan 07 2020 - 14:54:46 CST)
  • Bart Bruininks (Fri Dec 13 2019 - 05:01:18 CST)
  • John Stone (Fri Dec 13 2019 - 00:53:31 CST)
  • Dallas Warren (Thu Dec 05 2019 - 19:02:31 CST)
  • Bart Bruininks (Thu Dec 05 2019 - 10:56:54 CST)
• Filetype for Kinetic Monte Carlo
  • Anthony Ruth (Mon Nov 25 2019 - 08:19:44 CST)
  • Giacomo Fiorin (Fri Nov 22 2019 - 11:05:51 CST)
  • Axel Kohlmeyer (Fri Nov 22 2019 - 10:29:22 CST)
  • Anthony Ruth (Fri Nov 22 2019 - 09:07:31 CST)
• find avgstruct
  • Axel Kohlmeyer (Fri Nov 04 2011 - 07:29:32 CDT)
  • Ajasja LjubetiÄ� (Fri Nov 04 2011 - 06:03:16 CDT)
  • hamze rahimi (Fri Nov 04 2011 - 04:30:38 CDT)
• Find Hydrogens not participating in H-bond
  • Neena Susan Eappen (Wed May 01 2019 - 17:11:11 CDT)
• find neighbour ligand-protein
  • John Stone (Thu Mar 23 2006 - 08:57:52 CST)
  • andrea spitaleri (Thu Mar 23 2006 - 08:53:40 CST)
• Finding .vmdrc in LINUX(UBUNTU)
  • Vermaas, Joshua (Mon May 01 2017 - 11:32:53 CDT)
  • Dallas Warren (Sun Apr 30 2017 - 16:16:30 CDT)
  • Roshan Shrestha (Sat Apr 29 2017 - 01:31:54 CDT)
• Finding atoms in protein-lipid system having electrostatic interaction
  • Rabeta Yeasmin (Wed Aug 09 2017 - 15:22:53 CDT)
  • Rabeta Yeasmin (Wed Aug 09 2017 - 15:29:27 CDT)
  • Philippe Bopp (Wed Aug 09 2017 - 15:14:56 CDT)
  • Ashar Malik (Wed Aug 09 2017 - 14:27:48 CDT)
  • Rabeta Yeasmin (Wed Aug 09 2017 - 13:33:44 CDT)
• finding charges and diameters
  • Shuaib Shahid (Wed Feb 25 2004 - 03:21:52 CST)
  • Shuaib Shahid (Tue Feb 24 2004 - 11:20:27 CST)
• finding distance of atoms
  • Axel Kohlmeyer (Wed Jun 10 2015 - 13:01:03 CDT)
  • Mehdi Bagherpour (Wed Jun 10 2015 - 12:12:36 CDT)
• Finding gas migration pathways in protein using ILS method.
  • Muhammad tariq (Tue Jun 09 2020 - 04:51:21 CDT)
• Finding Local Kinetic Energy or Velocities
  • Axel Kohlmeyer (Wed May 23 2018 - 10:55:36 CDT)
  • Nick Palmer (Wed May 23 2018 - 10:28:53 CDT)
• finding number of atoms within a radius
  • Rogers Swai (Mon Sep 07 2020 - 04:56:37 CDT)
  • Saikat Pal (Mon Sep 07 2020 - 00:54:08 CDT)
• Finding particles that are close
  • John Stone (Wed Oct 09 2013 - 09:50:22 CDT)
  • Olaf Lenz (Wed Oct 09 2013 - 02:37:07 CDT)
  • John Stone (Tue Oct 08 2013 - 16:43:34 CDT)
  • Chris Knorowski (Tue Oct 08 2013 - 16:05:38 CDT)
  • Bennion, Brian (Tue Oct 08 2013 - 10:24:22 CDT)
  • John Stone (Tue Oct 08 2013 - 08:51:36 CDT)
  • Axel Kohlmeyer (Tue Oct 08 2013 - 04:21:45 CDT)
  • Olaf Lenz (Tue Oct 08 2013 - 03:31:45 CDT)
• Finding residues involved in Hbonds.
  • Axel Kohlmeyer (Thu Sep 14 2006 - 13:12:56 CDT)
  • Nitin Bhardwaj (Thu Sep 14 2006 - 11:16:21 CDT)
• Finding residues with some distance
  • John Stone (Wed Mar 03 2010 - 22:35:10 CST)
  • Anurag Sethi (Wed Mar 03 2010 - 18:25:11 CST)
  • Neeraj Jagdish Agrawal (Wed Mar 03 2010 - 17:38:33 CST)
• Finding resname without using atomselect?
  • Cosseddu, Salvatore (Tue Nov 01 2011 - 18:35:22 CDT)
  • Cosseddu, Salvatore (Tue Nov 01 2011 - 18:48:29 CDT)
  • Axel Kohlmeyer (Tue Nov 01 2011 - 16:50:51 CDT)
  • Casey Johnson (Tue Nov 01 2011 - 15:46:28 CDT)
• Finding RMSD of atoms
  • Josh Vermaas (Fri Jul 10 2015 - 14:23:56 CDT)
  • Mehdi Bagherpour (Fri Jul 10 2015 - 12:41:25 CDT)
  • Mehdi Bagherpour (Fri Jul 10 2015 - 11:49:16 CDT)
• Finding the length of multiple small molecules
  • Axel Kohlmeyer (Sat Dec 08 2007 - 16:03:07 CST)
  • Manali Mehendale (Sat Dec 08 2007 - 15:09:47 CST)
  • Axel Kohlmeyer (Fri Dec 07 2007 - 14:19:47 CST)
  • Manali Mehendale (Fri Dec 07 2007 - 13:15:59 CST)
• Finding the Number of Chains Present via Scripting
  • harish vashisth (Fri Jun 08 2012 - 12:49:18 CDT)
  • Axel Kohlmeyer (Fri Jun 08 2012 - 12:10:36 CDT)
  • Nate Hurley (Fri Jun 08 2012 - 11:19:12 CDT)
• finding water around protein
  • divya nayar (Wed Jun 22 2011 - 23:55:35 CDT)
• Finding waters near a protein
  • Mihaela Drenscko (Tue Apr 26 2016 - 18:06:24 CDT)
  • Bennion, Brian (Tue Apr 26 2016 - 17:26:05 CDT)
  • Axel Kohlmeyer (Tue Apr 26 2016 - 17:14:43 CDT)
  • Mihaela Drenscko (Tue Apr 26 2016 - 16:46:02 CDT)
• First "Hands-On" Workshop on Structural DNA Nanotechnology
  • Dudo (Mon Sep 24 2018 - 09:49:19 CDT)
  • João Ribeiro (Mon Sep 24 2018 - 09:13:30 CDT)
• fit dcd is not converging
  • mohan maruthi sena (Fri Apr 22 2011 - 03:52:48 CDT)
  • mohan maruthi sena (Thu Apr 21 2011 - 22:53:01 CDT)
  • John Stone (Thu Apr 21 2011 - 15:02:48 CDT)
  • mohan maruthi sena (Thu Apr 21 2011 - 13:54:04 CDT)
  • John Stone (Thu Apr 21 2011 - 12:15:30 CDT)
  • mohan maruthi sena (Thu Apr 21 2011 - 11:49:02 CDT)
  • John Stone (Thu Apr 21 2011 - 11:17:02 CDT)
  • mohan maruthi sena (Thu Apr 21 2011 - 10:37:31 CDT)
  • mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
  • John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
  • mohan maruthi sena (Thu Apr 21 2011 - 04:10:07 CDT)
• Fit function
  • Joseph Geraci (Wed Mar 13 2013 - 14:00:55 CDT)
• fit.tcl
  • Bo Liu (Mon Nov 08 2010 - 09:23:24 CST)
  • divya nayar (Mon Nov 08 2010 - 03:01:14 CST)
• fitting
  • Justin Gullingsrud (Thu Jul 10 2003 - 09:20:41 CDT)
  • Vlad Cojocaru (Thu Jul 10 2003 - 07:13:07 CDT)
• fitting a line to 3D data points
  • Simon Dürr (Thu Nov 26 2015 - 08:37:45 CST)
  • Ajasja LjubetiÄ� (Thu Nov 26 2015 - 02:41:44 CST)
  • Vlad Cojocaru (Thu Nov 26 2015 - 02:18:55 CST)
  • Vlad Cojocaru (Wed Nov 25 2015 - 10:10:30 CST)
• Fitting simple geometric objects to a molecule ?
  • Justin Gullingsrud (Mon Dec 02 2002 - 09:19:55 CST)
  • Marc Baaden (Mon Dec 02 2002 - 04:59:11 CST)
• fitting structure to map generated by Volmap
  • Axel Kohlmeyer (Wed Oct 22 2008 - 10:38:15 CDT)
  • Tomek Wlodarski (Wed Oct 22 2008 - 04:56:03 CDT)
  • Tomek Wlodarski (Tue Oct 21 2008 - 15:30:46 CDT)
  • Axel Kohlmeyer (Tue Oct 21 2008 - 15:53:07 CDT)
  • Axel Kohlmeyer (Tue Oct 21 2008 - 14:53:57 CDT)
  • Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
  • Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
  • Tomek Wlodarski (Tue Oct 21 2008 - 07:55:09 CDT)
• Fitting trajectory frames to another molecule
  • Justin Gullingsrud (Mon Jul 18 2005 - 20:22:51 CDT)
  • klsale (Mon Jul 18 2005 - 18:49:15 CDT)
• Fix for SELinux breaking VMD on FC5
  • John Stone (Tue Apr 04 2006 - 11:28:38 CDT)
• Fix the Header of DCD File After Merging Multiple Trajectories
  • Efthymiou, Christos (Mon Jul 03 2023 - 04:19:11 CDT)
• fix the viewing angles
  • Axel Kohlmeyer (Mon Jun 18 2012 - 06:27:10 CDT)
  • XY (Mon Jun 18 2012 - 00:29:56 CDT)
• Fixed atoms
  • Hélder Bandarra Tavares (Wed Jun 10 2020 - 05:55:09 CDT)
  • Michael Robinson (Tue Jun 09 2020 - 22:14:48 CDT)
  • Hélder Bandarra Tavares (Tue Jun 09 2020 - 09:35:48 CDT)
• Fixed atoms question
  • Hélder Bandarra Tavares (Mon Jun 08 2020 - 12:51:07 CDT)
• Fixed number of solvatation water
  • Andrea Cristiani (Wed Apr 25 2007 - 04:56:41 CDT)
• fixing a molecule
  • Barry Isralewitz (Wed Aug 01 2001 - 17:40:06 CDT)
  • Jeff Taylor (Tue Jul 31 2001 - 10:19:39 CDT)
  • John Stone (Mon Jul 30 2001 - 20:40:28 CDT)
  • Mauricio Carrillo-Tripp (Mon Jul 30 2001 - 17:08:39 CDT)
• Fixing CAVE Functionality
  • Todd J. Furlong (Tue Apr 09 2002 - 10:27:49 CDT)
• Fixing coordinates for visualization
  • Vermaas, Joshua (Thu Mar 14 2019 - 12:43:48 CDT)
  • Eugenio Gil (Thu Mar 14 2019 - 08:22:14 CDT)
• Fixing Martini PSF
  • Ganne, Akshatha (Mon Jul 09 2018 - 18:00:38 CDT)
• Fixing Memory Overflow Issue with LJ Parameter Assignment
  • John Stone (Tue Jan 26 2021 - 01:30:38 CST)
  • Peter Freddolino (Thu Jan 21 2021 - 00:33:44 CST)
  • Timothy Leong (Wed Jan 20 2021 - 12:23:53 CST)
• Fixing the rotation of complex during trajectory visualization
  • MannyEful E (Wed Nov 19 2014 - 08:18:25 CST)
  • Ashar Malik (Wed Nov 19 2014 - 06:54:59 CST)
  • Kshatresh Dutta Dubey (Wed Nov 19 2014 - 06:09:27 CST)
• Fixing the View in a Movie
  • John Stone (Fri Oct 12 2007 - 16:14:14 CDT)
  • carlos_at_avalon.umaryland.edu (Fri Oct 12 2007 - 11:44:45 CDT)
• Fixing VMD build with recent FLTK on macOS
  • John Stone (Thu Apr 26 2018 - 17:30:17 CDT)
• flashing the VMD
  • mohammad agha (Sat May 19 2012 - 02:49:39 CDT)
  • Wang Yi (Thu May 10 2012 - 11:17:11 CDT)
  • Axel Kohlmeyer (Thu May 10 2012 - 10:49:11 CDT)
  • Wang Yi (Thu May 10 2012 - 09:57:19 CDT)
  • Axel Kohlmeyer (Thu May 10 2012 - 08:41:00 CDT)
  • mohammad agha (Thu May 10 2012 - 01:56:22 CDT)
  • mohammad agha (Thu May 10 2012 - 02:00:37 CDT)
  • mohammad agha (Thu May 10 2012 - 01:42:43 CDT)
  • John Stone (Wed May 09 2012 - 13:17:42 CDT)
  • mohammad agha (Wed May 09 2012 - 12:26:10 CDT)
  • mohammad agha (Wed May 09 2012 - 12:24:53 CDT)
  • mohammad agha (Wed May 09 2012 - 11:16:02 CDT)
  • John Stone (Wed May 09 2012 - 11:13:43 CDT)
  • mohammad agha (Wed May 09 2012 - 11:07:23 CDT)
  • Axel Kohlmeyer (Wed May 09 2012 - 11:01:54 CDT)
  • mohammad agha (Wed May 09 2012 - 10:26:50 CDT)
  • mohammad agha (Wed May 09 2012 - 10:24:58 CDT)
  • John Stone (Wed May 09 2012 - 10:30:23 CDT)
  • John Stone (Wed May 09 2012 - 10:11:38 CDT)
  • mohammad agha (Wed May 09 2012 - 10:07:24 CDT)
  • mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
  • Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
  • Axel Kohlmeyer (Tue May 08 2012 - 16:22:57 CDT)
  • mohammad agha (Tue May 08 2012 - 15:32:31 CDT)
  • mohammad agha (Tue May 08 2012 - 14:54:03 CDT)
  • mohammad agha (Tue May 08 2012 - 14:52:53 CDT)
  • Gianluca Interlandi (Tue May 08 2012 - 11:23:06 CDT)
  • Axel Kohlmeyer (Tue May 08 2012 - 09:18:17 CDT)
  • Axel Kohlmeyer (Tue May 08 2012 - 09:09:27 CDT)
  • Wang Yi (Tue May 08 2012 - 09:14:35 CDT)
  • Wang Yi (Tue May 08 2012 - 08:19:43 CDT)
  • mohammad agha (Tue May 08 2012 - 05:18:04 CDT)
• flasshing the VMD
  • Axel Kohlmeyer (Tue May 08 2012 - 08:16:53 CDT)
  • mohammad agha (Mon May 07 2012 - 22:25:58 CDT)
  • Axel Kohlmeyer (Mon May 07 2012 - 22:10:30 CDT)
  • mohammad agha (Mon May 07 2012 - 21:13:43 CDT)
• Flexible Water molecules
  • Jim Phillips (Fri Sep 24 2004 - 19:02:37 CDT)
  • Shirley Hui (Sat Feb 21 2004 - 17:54:00 CST)
• Flickering display when running remotely
  • Clarinet (Wed May 30 2012 - 04:37:58 CDT)
  • Peter C. Lai (Tue May 29 2012 - 12:51:51 CDT)
  • John Stone (Tue May 29 2012 - 11:01:26 CDT)
  • Clarinet (Tue May 29 2012 - 10:43:52 CDT)
• flip the sheet using transaxis command
  • Ashar Malik (Sun Mar 29 2015 - 01:29:38 CDT)
  • Ashar Malik (Sat Mar 28 2015 - 23:30:46 CDT)
  • Mohan maruthi sena (Sat Mar 28 2015 - 22:37:04 CDT)
• Flipping a molecule around its geometrical center
  • Vermaas, Joshua (Tue Jun 05 2018 - 07:55:00 CDT)
  • JC Gumbart (Mon Jun 04 2018 - 23:39:24 CDT)
  • Casalino, Lorenzo (Mon Jun 04 2018 - 23:37:12 CDT)
  • Ashar Malik (Mon Jun 04 2018 - 23:29:51 CDT)
  • Lorenzo Casalino (Mon Jun 04 2018 - 21:38:37 CDT)
• Flipping vector in orient
  • Raul Araya (Tue Jan 19 2021 - 09:21:39 CST)
• floating error - tcl script
  • Ban Arn (Fri Feb 03 2012 - 04:51:11 CST)
• Flow Fields
  • Axel Kohlmeyer (Tue Feb 10 2009 - 16:53:19 CST)
  • John Stone (Tue Feb 10 2009 - 16:28:08 CST)
  • Roland Schulz (Tue Feb 10 2009 - 16:04:23 CST)
• FLTK fonts
  • John Stone (Mon Aug 20 2012 - 16:43:36 CDT)
  • John Stone (Mon Aug 20 2012 - 10:57:24 CDT)
  • GUIXA GONZALEZ, RAMON (Sun Aug 19 2012 - 09:26:24 CDT)
• Flying metal ion in QWIKMD ( NAMD/ORCA) QM/MM
  • Herald Delis (Sat Aug 07 2021 - 14:01:27 CDT)
• Focal blur with Tachyon
  • John Stone (Thu Aug 05 2010 - 17:09:46 CDT)
  • Bogdan Costescu (Fri Jul 30 2010 - 04:49:55 CDT)
  • Nicolas Sapay (Fri Jul 30 2010 - 03:13:49 CDT)
• follow up
  • John Stone (Mon Jun 04 2001 - 15:47:29 CDT)
  • Jeff Taylor (Mon Jun 04 2001 - 15:30:35 CDT)
• follow-up of "new VMD plugin for H5MD file format"
  • Pierre de Buyl (Thu Apr 23 2015 - 06:56:29 CDT)
• Follow-up to PME question
  • Stefan Franzen (Sun May 02 2010 - 16:54:06 CDT)
• follow-up to previous message
  • sjcav_at_aros.net (Sat Jun 29 2002 - 03:56:13 CDT)
• followup: atomselect one liner
  • Ashar Malik (Sat Jul 20 2019 - 05:15:51 CDT)
  • Philippe Bopp (Sat Jul 20 2019 - 04:09:27 CDT)
• font size
  • Deepak Singh (Fri Nov 12 1999 - 13:38:53 CST)
• Font size of the colorbar legends and rotation of the colorscale bar
  • bibhab majumdar (Sun Feb 26 2023 - 22:44:56 CST)
• fonts for paratool
  • John Stone (Thu Sep 22 2011 - 01:31:07 CDT)
  • Francesco Pietra (Sun Sep 18 2011 - 09:11:38 CDT)
• For calculating the number of osmolytes molecules
  • Gianfranco Abrusci (Mon Sep 16 2019 - 12:37:00 CDT)
  • Joao Ribeiro (Mon Sep 16 2019 - 09:35:59 CDT)
  • Ashma Khan (Mon Sep 16 2019 - 09:47:08 CDT)
  • Ashma Khan (Mon Sep 16 2019 - 04:51:51 CDT)
• For loops decelerate
  • Axel Kohlmeyer (Mon Jun 06 2011 - 16:36:31 CDT)
  • Benjamin Hall (Mon Jun 06 2011 - 16:28:31 CDT)
  • John Stone (Mon Jun 06 2011 - 13:47:41 CDT)
  • Axel Kohlmeyer (Fri Jun 03 2011 - 14:19:12 CDT)
  • John Stone (Fri Jun 03 2011 - 14:13:14 CDT)
  • Axel Kohlmeyer (Fri Jun 03 2011 - 13:57:27 CDT)
  • John Stone (Fri Jun 03 2011 - 13:02:04 CDT)
  • Benjamin Hall (Fri Jun 03 2011 - 11:23:25 CDT)
  • Axel Kohlmeyer (Thu Jun 02 2011 - 06:27:04 CDT)
  • Benjamin Hall (Thu Jun 02 2011 - 03:39:02 CDT)
• for surface area calculation
  • Abhishek TYAGI (Fri Oct 14 2016 - 08:36:56 CDT)
• For Users of VMD
  • Yojana Joshi (Mon Feb 16 2004 - 09:58:50 CST)
• Force extension from SMD log file
  • snoze pa (Thu Aug 20 2009 - 17:25:20 CDT)
• Force field atom types
  • Peter Freddolino (Sun Oct 28 2007 - 10:25:28 CDT)
  • FyD (Sun Oct 28 2007 - 05:23:11 CDT)
• Force field tool kit - calculation of enthalpy of vaporization
  • Mayne, Christopher G (Mon May 16 2016 - 10:26:03 CDT)
  • Mohan maruthi sena (Thu May 12 2016 - 12:42:51 CDT)
• force field tool kit - error in the step of tutorial charges optimization 2-using vmd1.9.1
  • Mayne, Christopher G (Thu Sep 19 2013 - 08:14:38 CDT)
  • Mohan maruthi sena (Thu Sep 19 2013 - 04:52:34 CDT)
  • Mohan maruthi sena (Thu Sep 19 2013 - 03:38:09 CDT)
• Force field tool kit - missing close brackets-vmd version 1.9.2
  • Axel Kohlmeyer (Mon Sep 30 2013 - 02:47:21 CDT)
  • Mohan maruthi sena (Mon Sep 30 2013 - 01:40:41 CDT)
• Force Field Toolkit (ffTK)
  • Norge Cruz Hernández (Wed Aug 08 2018 - 11:43:40 CDT)
  • JC Gumbart (Mon Jul 30 2018 - 06:57:51 CDT)
  • Norge Cruz Hernández (Mon Jul 30 2018 - 05:32:39 CDT)
• Force field toolkit (ffTK) - problem of reading Gaussian log file
  • Mayne, Christopher G (Sat Mar 10 2012 - 15:44:06 CST)
  • Wang Yi (Sat Mar 10 2012 - 15:14:20 CST)
  • Wang Yi (Sat Mar 10 2012 - 13:58:20 CST)
• Force Field ToolKit - Angles
  • DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:20:54 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:22:37 CDT)
  • Mayne, Christopher G (Mon Apr 30 2012 - 20:15:21 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 15:22:42 CDT)
  • JC Gumbart (Mon Apr 30 2012 - 15:26:07 CDT)
  • Wang Yi (Sun Apr 29 2012 - 19:56:10 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 19:29:33 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:58:39 CDT)
  • Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
  • JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 14:39:52 CDT)
• Force Field ToolKit and QM codes other than Gaussian
  • Axel Kohlmeyer (Mon Jun 25 2012 - 05:07:47 CDT)
  • MOHAMMAD JAVAD AGHAEI (Mon Jun 25 2012 - 02:05:41 CDT)
• Force Field Toolkit: scaling, weight etc
  • DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:11:56 CDT)
  • Mayne, Christopher G (Sun Apr 29 2012 - 16:13:30 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 06:37:04 CDT)
• force over selection
  • John Stone (Thu Mar 23 2006 - 10:26:50 CST)
  • Ioana Cozmuta (Wed Mar 22 2006 - 23:51:46 CST)
• Forcing FFTK to treat aminos as planar
  • Aaron Larsen (Thu Jun 18 2015 - 14:57:16 CDT)
  • Aaron Larsen (Thu Jun 18 2015 - 14:27:55 CDT)
  • Mayne, Christopher G (Thu Jun 18 2015 - 14:37:31 CDT)
  • Mayne, Christopher G (Fri Jun 12 2015 - 10:18:00 CDT)
  • Aaron Larsen (Fri Jun 12 2015 - 08:03:25 CDT)
• format I should use if I have different total number of atoms for each timesteps
  • Pawel Kedzierski (Fri Dec 12 2014 - 02:32:05 CST)
  • Ashar Malik (Thu Dec 11 2014 - 20:58:14 CST)
  • Jun-Chieh Wang (Thu Dec 11 2014 - 19:47:04 CST)
• format of pdb file
  • Axel Kohlmeyer (Mon Oct 12 2009 - 10:10:06 CDT)
  • Christine Horejs (Mon Oct 12 2009 - 09:04:51 CDT)
• Format of the axes
  • John Stone (Wed Jun 04 2003 - 14:22:20 CDT)
• Formation of a gold layer
  • John Stone (Tue Mar 16 2004 - 10:24:23 CST)
  • lmfok_at_acae.cuhk.edu.hk (Mon Mar 08 2004 - 20:41:33 CST)
• Formation of a nanoparticle-ligand complex
  • Yuvam Bhateja (Fri Oct 09 2020 - 14:10:08 CDT)
• Formats supported by animate write file_type
  • Salvatore Mario Cosseddu (Thu Jan 20 2011 - 10:19:42 CST)
• Formatting labels in script
  • Jim Parker (Fri Aug 23 2013 - 06:02:26 CDT)
  • Jim Parker (Fri Aug 23 2013 - 06:30:11 CDT)
  • PaweÅ‚ KÄ™dzierski (Fri May 17 2013 - 09:03:40 CDT)
  • Axel Kohlmeyer (Fri May 17 2013 - 05:22:43 CDT)
  • PaweÅ‚ KÄ™dzierski (Fri May 17 2013 - 04:17:59 CDT)
• Formatting of text in label
  • Roshan Shrestha (Fri Apr 21 2023 - 09:14:41 CDT)
• fortran bindings for molfile library
  • John Stone (Wed Feb 15 2006 - 10:22:04 CST)
  • Axel Kohlmeyer (Wed Feb 15 2006 - 09:31:54 CST)
• fortran/tcl
  • Axel Kohlmeyer (Fri May 25 2007 - 10:55:50 CDT)
  • Luca Bellucci (Fri May 25 2007 - 03:13:54 CDT)
• Found bad contact
  • Diship Srivastava (Thu Jun 10 2021 - 11:11:59 CDT)
  • Josh Vermaas (Thu Jun 10 2021 - 10:35:11 CDT)
  • Ropon-Palacios G. (Thu Jun 10 2021 - 10:23:46 CDT)
  • Ropon-Palacios G. (Thu Jun 10 2021 - 10:19:13 CDT)
  • Vermaas, Josh (Thu Jun 10 2021 - 10:20:24 CDT)
• FPR monitor+glasses
  • John Stone (Mon Feb 25 2013 - 16:36:54 CST)
  • Axel Kohlmeyer (Fri Feb 22 2013 - 08:18:12 CST)
  • Marcel UJI (IMAP) (Fri Feb 22 2013 - 07:13:42 CST)
• FPS indicator color
  • John Stone (Wed Jul 21 2004 - 11:12:48 CDT)
  • Olaf Lenz (Tue Jul 20 2004 - 12:06:03 CDT)
  • John Stone (Mon Jul 19 2004 - 11:35:36 CDT)
  • John Stone (Mon Jul 19 2004 - 10:16:20 CDT)
  • Olaf Lenz (Mon Jul 19 2004 - 10:06:55 CDT)
• Fragment determination
  • MD Simulation (Sat Jul 01 2017 - 11:19:01 CDT)
• Fragments
  • John Stone (Thu Apr 22 2010 - 10:26:59 CDT)
  • Olaf Lenz (Wed Apr 21 2010 - 03:19:04 CDT)
• Frame creation
  • Axel Kohlmeyer (Fri Sep 25 2009 - 05:14:03 CDT)
  • Andreas Wagenmann (Fri Sep 25 2009 - 02:01:27 CDT)
  • John Stone (Thu Sep 24 2009 - 10:02:58 CDT)
  • Axel Kohlmeyer (Thu Sep 24 2009 - 10:13:16 CDT)
  • Andreas Wagenmann (Thu Sep 24 2009 - 09:28:50 CDT)
• frame number input in tcl and direct mol graph display update
  • Axel Kohlmeyer (Thu Jul 12 2007 - 10:03:43 CDT)
  • pascal.baillod_at_epfl.ch (Thu Jul 12 2007 - 09:35:45 CDT)
• frame number input in tcl and direct mol graph display update (II)
  • Axel Kohlmeyer (Fri Jul 27 2007 - 13:56:05 CDT)
  • John Stone (Fri Jul 27 2007 - 12:40:35 CDT)
  • pascal.baillod_at_epfl.ch (Fri Jul 27 2007 - 04:56:24 CDT)
  • John Stone (Thu Jul 26 2007 - 16:25:21 CDT)
  • pascal.baillod_at_epfl.ch (Tue Jul 24 2007 - 09:36:35 CDT)
• Frame out of range when trying to edit .psf
  • Francesco Pietra (Sun Jun 24 2018 - 03:29:24 CDT)
  • Francesco Pietra (Sat Jun 23 2018 - 11:46:37 CDT)
• Frames-Movie
  • Axel Kohlmeyer (Wed May 19 2010 - 14:39:12 CDT)
  • Vikas Varshney (Wed May 19 2010 - 13:12:58 CDT)
  • Salvador H-V (Wed May 19 2010 - 11:54:32 CDT)
• Free Cluster-Building Workshops - 16-17 Mar 2006, 20-21 Apr 2006
  • Tim Skirvin (Mon Feb 13 2006 - 13:33:09 CST)
• Free Energy Perturbation Analysis using VMD
  • Brian Radak (Fri Dec 14 2018 - 10:24:22 CST)
  • HOCHEOL LIM (Thu Dec 13 2018 - 01:24:02 CST)
• Free Energy Workshop, Münster, March 9-11, 2015
  • Vlad Cojocaru (Fri Jan 09 2015 - 03:20:14 CST)
• Free Linux Cluster-Building Workshop - 30 Nov 2006 - 01 Dec 2006
  • Tim Skirvin (Mon Oct 16 2006 - 12:34:13 CDT)
• free sample!!!
  • Ali Deyhim (Wed May 09 2001 - 10:35:13 CDT)
  • your1word_at_yahoo.com (Wed May 09 2001 - 07:18:35 CDT)
• Free software for building peptide
  • sajad falsafi (Wed May 02 2012 - 06:56:14 CDT)
  • amin_at_imtech.res.in (Wed May 02 2012 - 04:06:30 CDT)
  • Thomas Evangelidis (Wed May 02 2012 - 04:01:09 CDT)
  • meisam valizadeh kiamahalleh (Wed May 02 2012 - 01:34:20 CDT)
• Free Trial of New Toxicity Prediction Software (LD50, MRDD, side effects) is now available
  • Maxim Kholin (Tue Oct 28 2008 - 09:00:25 CDT)
• Free Webinar: Vendor Neutral Intro to Data Mining for Absolute Beginners, January 26, 2007
  • Lisa Solomon (Mon Jan 15 2007 - 22:55:13 CST)
• FreeBSD port
  • Stephen Montgomery-Smith (Thu Aug 12 2004 - 23:20:56 CDT)
• freevr tool transformation
  • John Stone (Thu Jan 03 2008 - 01:12:44 CST)
  • Ahmed Nawar (Thu Jan 03 2008 - 00:28:31 CST)
• FreeVR wand
  • John Stone (Tue Dec 04 2007 - 18:00:55 CST)
  • Ahmed Nawar (Tue Dec 04 2007 - 03:42:13 CST)
• frequecy of inter-residue contact
  • Anjela Manandhar (Mon Jun 13 2016 - 16:12:15 CDT)
• from points to a surface ?
  • Paul Grayson (Fri Aug 30 2002 - 09:59:54 CDT)
  • Marc Baaden (Fri Aug 30 2002 - 04:37:22 CDT)
  • Paul Grayson (Wed Aug 28 2002 - 17:08:19 CDT)
  • John Stone (Wed Aug 28 2002 - 16:43:21 CDT)
  • Marc Baaden (Wed Aug 28 2002 - 16:35:10 CDT)
  • John Stone (Wed Aug 28 2002 - 15:05:35 CDT)
  • Marc Baaden (Wed Aug 28 2002 - 03:03:48 CDT)
• From Vmd to lammps data file
  • Axel Kohlmeyer (Mon Feb 27 2012 - 09:19:31 CST)
  • Dimitrios Mantzalis (Mon Feb 27 2012 - 09:07:05 CST)
  • Axel Kohlmeyer (Mon Feb 27 2012 - 08:07:24 CST)
  • Dimitrios Mantzalis (Mon Feb 27 2012 - 06:55:34 CST)
• ftp failed
  • $B:,>k(J $B6Q(J (Thu Aug 29 2002 - 03:21:12 CDT)
  • John Stone (Wed Aug 28 2002 - 15:28:00 CDT)
  • $B:,>k(J $B6Q(J (Tue Aug 27 2002 - 02:35:49 CDT)
  • John Stone (Mon Aug 26 2002 - 10:58:43 CDT)
  • Hitoshi Nejo (Fri Aug 23 2002 - 02:14:23 CDT)
• full version OEM soft
  • chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 23:14:25 CDT)
• Full-Screen display
  • Grzegorz Wieczorek (Wed Dec 05 2012 - 08:24:33 CST)
  • Axel Kohlmeyer (Tue Dec 04 2012 - 09:47:31 CST)
  • Axel Kohlmeyer (Tue Dec 04 2012 - 08:54:23 CST)
  • Sabine Reisser (Tue Dec 04 2012 - 06:54:47 CST)
• Fullerene coordinates
  • lothar esser (Fri Aug 27 2004 - 08:21:41 CDT)
  • #WONG CHEE HOW# (Fri Aug 27 2004 - 03:50:03 CDT)
• Fullscreen mode in VMD
  • John Stone (Tue Oct 07 2008 - 12:53:07 CDT)
  • Alexandr Bezginov (Tue Oct 07 2008 - 12:34:59 CDT)
• Fully Visual Docker Container for VMD
  • Matthew Kenney (Mon Jul 16 2018 - 15:49:49 CDT)
  • Matthew Kenney (Mon Jul 16 2018 - 15:37:32 CDT)
  • John Stone (Mon Jul 16 2018 - 15:06:35 CDT)
  • Matthew Kenney (Mon Jul 16 2018 - 10:00:16 CDT)
• function returned by atomselect; use global atomselect function from proc scope
  • Eric Smoll (Mon Apr 10 2017 - 10:30:03 CDT)
  • Eric Smoll (Mon Apr 10 2017 - 10:27:23 CDT)
• Functional Groups
  • Axel Kohlmeyer (Fri Jan 09 2009 - 08:16:12 CST)
  • Max (Fri Jan 09 2009 - 04:51:39 CST)
• Functionalizing
  • Mohsen Farshad (Mon Aug 21 2017 - 09:30:19 CDT)
• Funnel metadynamics
  • Prithwish Nandi (Fri Aug 13 2021 - 08:27:08 CDT)
  • Giacomo Fiorin (Fri Aug 13 2021 - 08:48:24 CDT)
  • Prithwish Nandi (Fri Aug 13 2021 - 07:59:36 CDT)
  • Ashar Malik (Fri Aug 13 2021 - 08:05:38 CDT)
  • Ashar Malik (Fri Aug 13 2021 - 07:20:50 CDT)
  • Prithwish Nandi (Fri Aug 13 2021 - 06:14:45 CDT)
• Funny tcl/tk script behavior....
  • Alberto Sergio Garay (Tue Jun 30 2009 - 12:08:32 CDT)
  • Axel Kohlmeyer (Tue Jun 30 2009 - 09:48:45 CDT)
  • Alberto Sergio Garay (Tue Jun 30 2009 - 08:02:57 CDT)
• Further angle question
  • Axel Kohlmeyer (Sat Sep 08 2007 - 20:37:28 CDT)
  • jo hanna (Sat Sep 08 2007 - 09:16:15 CDT)
• Fusing proteins together
  • Nick Palmer (Fri Jul 27 2018 - 10:05:31 CDT)
  • Ashar Malik (Thu Jul 26 2018 - 19:33:48 CDT)
  • Dhiraj Srivastava (Thu Jul 26 2018 - 16:50:55 CDT)
  • Ashar Malik (Thu Jul 26 2018 - 16:01:55 CDT)
  • Nick Palmer (Thu Jul 26 2018 - 13:53:48 CDT)
• Fwd:
  • John Stone (Mon Jul 29 2019 - 12:55:54 CDT)
  • Charu Sharma (JRF) (Wed Jul 24 2019 - 08:59:05 CDT)
  • John Stone (Wed Jul 24 2019 - 08:42:45 CDT)
  • Charu Sharma (JRF) (Wed Jul 24 2019 - 03:57:31 CDT)
  • Charu Sharma (JRF) (Wed Jul 24 2019 - 03:03:06 CDT)
• Fwd: "cuda error cudastreamcreate",
  • Francesco Pietra (Fri Jun 17 2011 - 02:36:49 CDT)
  • John Stone (Fri Jun 17 2011 - 01:22:50 CDT)
  • Francesco Pietra (Fri Jun 17 2011 - 00:50:05 CDT)
• Fwd: (my) problems using molefacture dihedral
  • Francesco Pietra (Sun Apr 03 2011 - 09:14:44 CDT)
  • Francesco Pietra (Sun Apr 03 2011 - 08:49:53 CDT)
• Fwd: -samples flag of measure sasa
  • Nuno Sousa Cerqueira (Fri Jun 18 2010 - 15:20:23 CDT)
  • John Stone (Fri Jun 18 2010 - 15:25:51 CDT)
• Fwd: .pdbqt file type
  • Francesco Pietra (Thu Mar 17 2011 - 05:16:04 CDT)
• Fwd: [ACS award information, March 30 deadline]
  • John Stone (Mon Mar 22 2010 - 12:23:45 CDT)
• Fwd: [multiple topology files and resetpsf]
  • Jim Phillips (Tue Feb 08 2011 - 14:49:48 CST)
• Fwd: ACS awards
  • John Stone (Mon Sep 15 2008 - 12:53:34 CDT)
• Fwd: ACS awards information
  • John Stone (Mon Mar 07 2011 - 10:45:17 CST)
• Fwd: adding calcium atom to the nmr structure
  • Mahendra B Thapa (Fri Aug 09 2013 - 18:38:33 CDT)
• Fwd: Align specific residues of two structures
  • Hailin Huang (Mon Mar 31 2014 - 02:07:44 CDT)
• Fwd: Announce: STRAP
  • John Stone (Tue Mar 16 2004 - 16:06:47 CST)
• Fwd: APBS on each frame
  • Davide Mercadante (Thu Aug 08 2013 - 16:08:12 CDT)
  • PANAGIOTA KYRIAKOU (Thu Aug 08 2013 - 14:56:39 CDT)
• Fwd: APBS on each frame -> ON FLY ANALYSIS
  • Thomas C. Bishop (Fri Aug 09 2013 - 09:30:32 CDT)
• Fwd: ATOM LPH
  • Francesco Pietra (Wed Apr 15 2020 - 05:10:09 CDT)
  • Francesco Pietra (Tue Apr 14 2020 - 14:48:26 CDT)
  • Francesco Pietra (Tue Apr 14 2020 - 14:52:10 CDT)
• Fwd: atom serial number
  • Francesco Pietra (Sun Jul 01 2007 - 02:59:07 CDT)
• Fwd: autopsf error: failed on end of segment
  • Peter Freddolino (Tue Dec 28 2010 - 19:01:22 CST)
  • Jim Phillips (Tue Dec 28 2010 - 17:03:41 CST)
  • Dong Luo (Wed Dec 22 2010 - 09:51:39 CST)
  • Francesco Pietra (Wed Dec 22 2010 - 00:50:35 CST)
• Fwd: autopsf with many modifiers
  • Peter Freddolino (Sun Sep 19 2021 - 00:11:26 CDT)
  • Francesco Pietra (Mon Sep 13 2021 - 12:45:15 CDT)
  • Peter Freddolino (Mon Sep 13 2021 - 12:00:20 CDT)
  • Francesco Pietra (Mon Sep 13 2021 - 09:25:31 CDT)
  • Francesco Pietra (Mon Sep 13 2021 - 04:58:30 CDT)
• Fwd: autopsf-patches C++ error 'expected integer but got "" ""' SOLVED, MY FAULT
  • Francesco Pietra (Fri Feb 25 2011 - 07:59:56 CST)
• Fwd: autopsfgen looking for wrong angle
  • Francesco Pietra (Thu Nov 18 2021 - 02:28:25 CST)
• Fwd: bond lengths and angle display
  • Diego Gomes (Fri Mar 01 2024 - 10:08:19 CST)
  • Diego Gomes (Thu Feb 29 2024 - 22:10:19 CST)
  • SKM (Wed Feb 28 2024 - 21:43:52 CST)
• Fwd: Bypassing MM parameterization of ligand in QMMM
  • Francesco Pietra (Wed May 06 2020 - 03:10:29 CDT)
• Fwd: calculation hydrogen bond.
  • subrata paul (Thu Oct 20 2011 - 22:57:17 CDT)
• Fwd: Calculation the Surface Area/Volume of a Protein Cavity
  • Nuno Sousa Cerqueira (Thu Dec 10 2009 - 07:13:07 CST)
• Fwd: catdcd error opening reading index file
  • Francesco Pietra (Sat Jun 23 2018 - 09:45:23 CDT)
  • Francesco Pietra (Sat Jun 23 2018 - 09:01:53 CDT)
• Fwd: CG lipid bilayer vmd 1.8.7
  • Francesco Pietra (Mon Dec 07 2009 - 01:31:46 CST)
  • Francesco Pietra (Mon Dec 07 2009 - 02:01:28 CST)
• Fwd: charmmgen to autopsf
  • Francesco Pietra (Tue Mar 22 2011 - 13:38:37 CDT)
  • Peter Freddolino (Tue Mar 22 2011 - 11:21:42 CDT)
  • Francesco Pietra (Tue Mar 22 2011 - 11:03:05 CDT)
  • Peter Freddolino (Mon Mar 21 2011 - 19:11:35 CDT)
  • Francesco Pietra (Mon Mar 21 2011 - 07:20:00 CDT)
• Fwd: Compile / Configure VMD with the Oculus Rift DK2
  • John Stone (Fri Nov 11 2016 - 10:03:12 CST)
• Fwd: Compiling VMD with python interpreter on MacOSX
  • Maxim Belkin (Wed Nov 18 2015 - 10:52:52 CST)
  • kskeby (Wed Nov 18 2015 - 10:43:22 CST)
  • Josh Vermaas (Wed Nov 18 2015 - 09:45:12 CST)
  • kskeby (Wed Nov 18 2015 - 08:29:45 CST)
• Fwd: Compute angle between 2 principal axis
  • Revthi Sanker (Sat Jun 21 2014 - 00:07:50 CDT)
• Fwd: convert prmtop to psf
  • Lai zaizhi (Mon Jun 21 2010 - 16:42:10 CDT)
• Fwd: Copper ions paratool
  • Francesco Pietra (Fri Sep 23 2011 - 10:12:04 CDT)
• Fwd: couldn't execute "psfgen": no such file or directory
  • zeynab hoseyni (Sun Dec 06 2015 - 07:39:17 CST)
• Fwd: Crystal eyes stereo on un supported Mac G5 GeForce FX5200
  • John Stone (Fri Aug 18 2006 - 11:42:34 CDT)
  • Dan White (Fri Aug 18 2006 - 09:15:23 CDT)
• Fwd: dcd file uploading problem
  • Axel Kohlmeyer (Thu Dec 05 2013 - 22:56:17 CST)
  • Subbusinger N (Thu Dec 05 2013 - 21:59:32 CST)
• Fwd: Diffusion coefficient calculation
  • Vermaas, Joshua (Sun Sep 30 2018 - 18:06:15 CDT)
  • Kinkini Jayasundara (Sat Sep 29 2018 - 11:30:47 CDT)
• Fwd: Digest
  • Dr. Daniel James White PhD (Wed Mar 17 2004 - 03:32:00 CST)
• Fwd: Dihedral fitting -FFTK-shift in minima
  • Mohan maruthi sena (Wed Sep 28 2016 - 05:19:09 CDT)
• Fwd: Displaying residue name in simulation movie
  • James Lord (Sun Oct 12 2014 - 22:11:16 CDT)
• Fwd: distance using pbc
  • Sangkha Borah (Tue Mar 01 2016 - 10:18:58 CST)
• Fwd: Dowser plugin: Error message
  • John Stone (Tue Aug 23 2011 - 12:39:44 CDT)
  • George Tzotzos (Mon Aug 22 2011 - 16:34:31 CDT)
• Fwd: Electrostatic potential maps
  • Francesco Pietra (Mon May 25 2020 - 04:41:32 CDT)
  • Sebastian Reiter (Mon May 25 2020 - 04:10:18 CDT)
  • Francesco Pietra (Mon May 25 2020 - 03:03:03 CDT)
  • Mortimer Hemmit (Sun May 24 2020 - 16:31:50 CDT)
  • Francesco Pietra (Sun May 24 2020 - 08:58:49 CDT)
• Fwd: Extensions not working
  • Francesco Pietra (Sun Dec 09 2018 - 01:29:24 CST)
• Fwd: Failure of autopsf with modified nucleotides
  • Francesco Pietra (Thu Jan 06 2022 - 09:01:58 CST)
• Fwd: Failure of AutoSCFBuilder to recognize all monomers
  • Francesco Pietra (Sun Jan 03 2010 - 09:24:22 CST)
• Fwd: Failure with AutoPSF (PDB has x, y, z zero)
  • Peter Freddolino (Sat Dec 05 2009 - 15:40:27 CST)
  • Francesco Pietra (Sat Dec 05 2009 - 14:25:41 CST)
  • Francesco Pietra (Sat Dec 05 2009 - 12:51:22 CST)
• Fwd: Fake angles created by AutoPSF
  • Peter Freddolino (Thu Dec 24 2020 - 09:19:58 CST)
  • Francesco Pietra (Thu Dec 24 2020 - 01:03:23 CST)
  • Peter Freddolino (Wed Dec 23 2020 - 20:35:40 CST)
  • Francesco Pietra (Wed Dec 23 2020 - 08:55:08 CST)
• Fwd: FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT
  • Adupa Vasista (Wed Jul 10 2019 - 10:32:16 CDT)
• Fwd: FEP with intermediary segments
  • Axel Kohlmeyer (Fri May 04 2018 - 11:12:04 CDT)
  • Brian Radak (Fri May 04 2018 - 11:04:10 CDT)
  • Francesco Pietra (Fri May 04 2018 - 10:51:45 CDT)
  • Brian Radak (Fri May 04 2018 - 08:01:28 CDT)
  • Francesco Pietra (Fri May 04 2018 - 00:37:18 CDT)
• Fwd: FFTK about Water Interaction
  • Francesco Pietra (Fri Jul 19 2013 - 11:50:29 CDT)
• Fwd: FFTK and CGenFF
  • Francesco Pietra (Wed Jul 17 2013 - 12:48:36 CDT)
• Fwd: FFTK Atom types
  • Francesco Pietra (Wed Mar 27 2013 - 03:34:30 CDT)
• Fwd: FFTK plugin, Water Inter issue
  • Mayne, Christopher G (Tue Mar 26 2013 - 14:29:29 CDT)
  • Josh Vermaas (Tue Mar 26 2013 - 13:48:40 CDT)
  • Francesco Pietra (Tue Mar 26 2013 - 12:20:12 CDT)
• Fwd: ffTK problems with Gaussian OPT
  • Mayne, Christopher G (Mon Aug 17 2015 - 14:31:52 CDT)
  • Francesco Pietra (Sun Aug 16 2015 - 05:54:24 CDT)
• Fwd: FFTK scan torsions aromatics
  • Christian Jorgensen (Fri Dec 06 2013 - 05:07:42 CST)
  • Francesco Pietra (Wed Jul 24 2013 - 05:16:30 CDT)
  • Mayne, Christopher G (Wed Jul 24 2013 - 04:36:38 CDT)
  • Francesco Pietra (Tue Jul 23 2013 - 03:12:05 CDT)
• Fwd: ffTk, regarding
  • RAHUL SURESH (Mon Jul 31 2017 - 05:38:55 CDT)
• Fwd: fixed atoms_creating psf with out change in pdb
  • Tristan Croll (Sat Sep 06 2014 - 00:10:59 CDT)
  • Tristan Croll (Thu Sep 04 2014 - 07:09:58 CDT)
  • Boshra Moradi (Wed Sep 03 2014 - 21:13:08 CDT)
• Fwd: Fwd: autopsf with many modifiers
  • Francesco Pietra (Tue Sep 14 2021 - 04:30:38 CDT)
  • Francesco Pietra (Tue Sep 14 2021 - 03:04:07 CDT)
• Fwd: Fwd: Electrostatic potential maps
  • Sebastian Reiter (Mon May 25 2020 - 09:56:00 CDT)
  • Sebastian Reiter (Mon May 25 2020 - 06:35:18 CDT)
  • Francesco Pietra (Mon May 25 2020 - 04:48:46 CDT)
• Fwd: Fwd: Fake angles created by AutoPSF
  • Francesco Pietra (Thu Dec 24 2020 - 03:24:44 CST)
• Fwd: Fwd: FFTK scan torsions aromatics
  • Francesco Pietra (Tue Jul 23 2013 - 09:50:51 CDT)
• Fwd: Fwd: Fwd: Electrostatic potential maps
  • John Stone (Fri May 29 2020 - 21:50:01 CDT)
  • Francesco Pietra (Fri May 29 2020 - 05:07:20 CDT)
  • Sebastian Reiter (Wed May 27 2020 - 09:36:37 CDT)
• Fwd: Fwd: namd-l: impropers for protonated 1-methyladenosine
  • Ashar Malik (Thu Oct 21 2021 - 08:51:20 CDT)
  • Francesco Pietra (Thu Oct 21 2021 - 07:56:06 CDT)
  • Ashar Malik (Thu Oct 21 2021 - 05:04:03 CDT)
  • Francesco Pietra (Thu Oct 21 2021 - 04:15:56 CDT)
  • Francesco Pietra (Wed Oct 20 2021 - 08:40:14 CDT)
• Fwd: Fwd: ParseFEP for restating FEP
  • Francesco Pietra (Sun Mar 25 2018 - 04:24:50 CDT)
• Fwd: Fwd: Visulizing subunits
  • Francesco Pietra (Wed Feb 12 2020 - 03:54:49 CST)
  • Francesco Pietra (Wed Feb 12 2020 - 02:31:20 CST)
• Fwd: generating COORDINATE FILES
  • PREETA DATTA (Tue Feb 20 2007 - 07:22:53 CST)
• Fwd: GROMOS to AMBER and reverse
  • John Stone (Fri Nov 29 2002 - 23:23:53 CST)
• Fwd: hbond analysis
  • John Stone (Fri Aug 05 2011 - 16:28:17 CDT)
  • subrata paul (Wed Aug 03 2011 - 07:41:05 CDT)
• Fwd: High quality movies, bmp frames and videomach=poor quality
  • Jennifer Williams (Wed Apr 21 2010 - 05:56:33 CDT)
• Fwd: How can I get the path of the TOP molecule in the tcl console?
  • Ashar Malik (Thu Dec 04 2014 - 22:15:51 CST)
• Fwd: How find water mediated hydrogen bond
  • M K (Tue Dec 16 2014 - 01:26:40 CST)
  • Axel Kohlmeyer (Wed Dec 10 2014 - 18:06:44 CST)
  • Josh Vermaas (Wed Dec 10 2014 - 17:57:40 CST)
  • Mehdi Bagherpour (Wed Dec 10 2014 - 16:33:25 CST)
• Fwd: How to pick up the lost periodic information?
  • dimka (Mon May 08 2006 - 12:08:53 CDT)
  • Axel Kohlmeyer (Mon May 08 2006 - 11:46:49 CDT)
  • Guo Zhi (Mon May 08 2006 - 09:04:46 CDT)
• Fwd: hydrogen bond calculations
  • Sasthi Charan Mandal (Sun Mar 17 2019 - 03:58:09 CDT)
• Fwd: Initial configuration reorientation
  • Anna (Wed Aug 24 2011 - 12:34:11 CDT)
• Fwd: Inviting applications for a new PhD program in Quantitative Biosciences at Georgia Tech
  • Sourav Ray (Wed Sep 09 2015 - 22:51:54 CDT)
  • JC Gumbart (Wed Sep 09 2015 - 18:15:34 CDT)
• Fwd: ISQBP 2016 meeting - registration opened!
  • Vlad Cojocaru (Mon Mar 14 2016 - 03:13:37 CDT)
• Fwd: issue with protein- ligand psfgen
  • Aditi Gotkhindikar (Mon Dec 27 2021 - 22:33:03 CST)
• Fwd: Klaus Schulten Memorial Symposium, registration and accommodation
  • David Hardy (Thu Oct 05 2017 - 15:29:08 CDT)
• Fwd: linux FC3 VMD vs insightII conflict
  • Bogdan Costescu (Wed Jan 12 2005 - 11:08:45 CST)
  • John Stone (Wed Jan 12 2005 - 10:20:08 CST)
  • Dr. Daniel James White PhD (Wed Jan 12 2005 - 06:36:57 CST)
• Fwd: Linux installation issue
  • Axel Kohlmeyer (Tue Jun 05 2007 - 10:00:17 CDT)
  • Francesco Pietra (Sun May 27 2007 - 02:44:32 CDT)
  • Axel Kohlmeyer (Sat May 26 2007 - 15:41:24 CDT)
  • Axel Kohlmeyer (Sat May 26 2007 - 15:36:40 CDT)
  • Francesco Pietra (Sat May 26 2007 - 09:57:40 CDT)
  • Francesco Pietra (Sat May 26 2007 - 09:47:51 CDT)
• Fwd: making psf files
  • Zeinab Emami (Thu Oct 02 2014 - 11:45:27 CDT)
• Fwd: matching part of two models
  • Francesco Pietra (Mon Aug 26 2013 - 03:46:55 CDT)
• Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...)
  • Peter Freddolino (Wed Jul 16 2008 - 07:20:26 CDT)
  • bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
• Fwd: MOE discussion
  • Mike McCallum (Wed Apr 28 2004 - 23:11:43 CDT)
• Fwd: N-glycosylation in AutoPSF
  • JC Gumbart (Sun Aug 30 2020 - 06:39:36 CDT)
  • Adupa Vasista (Sun Aug 30 2020 - 02:20:32 CDT)
  • Peter Freddolino (Sat Aug 29 2020 - 23:21:49 CDT)
  • Adupa Vasista (Sat Aug 29 2020 - 03:21:23 CDT)
• Fwd: namd-l: About "add solvation"
  • Francesco Pietra (Mon Jan 21 2013 - 03:49:06 CST)
• Fwd: namd-l: Free Energy Workshop, Münster, March 9-11, 2015
  • Ana Celia Vila Verde (Fri Jan 09 2015 - 06:34:01 CST)
  • Ana Celia Vila Verde (Fri Jan 09 2015 - 03:35:00 CST)
• Fwd: namd-l: hBond component in colvars and patching
  • Francesco Pietra (Sun Mar 06 2011 - 02:36:10 CST)
• Fwd: namd-l: Modifying the equilibrium distance for a specific region of carbon nanotube in the parameter file
  • zeynab hoseyni (Mon Dec 26 2016 - 06:45:28 CST)
• Fwd: namd-l: water permeation through nanotube in lipid bilayer
  • Nikhil Maroli (Fri Jul 29 2016 - 10:59:23 CDT)
• Fwd: namd-l: Why RDF increases as r increase instead of constant
  • Tim Lo (Tue Nov 04 2014 - 20:48:32 CST)
  • Axel Kohlmeyer (Tue Nov 04 2014 - 14:29:41 CST)
  • Nifeng Guo hui (Tue Nov 04 2014 - 13:07:26 CST)
  • Axel Kohlmeyer (Tue Nov 04 2014 - 11:39:49 CST)
  • Nifeng Guo hui (Tue Nov 04 2014 - 10:58:23 CST)
  • Axel Kohlmeyer (Mon Nov 03 2014 - 15:49:48 CST)
  • Nifeng Guo hui (Mon Nov 03 2014 - 15:29:25 CST)
  • Axel Kohlmeyer (Mon Nov 03 2014 - 00:58:07 CST)
  • Nifeng Guo hui (Sun Nov 02 2014 - 22:19:43 CST)
  • Tim Lo (Sun Nov 02 2014 - 19:19:57 CST)
  • Nifeng Guo hui (Sun Nov 02 2014 - 16:01:29 CST)
• Fwd: NAMDEnergy fails to locate supporting files
  • Ashar Malik (Thu Feb 12 2015 - 00:48:48 CST)
• Fwd: Naming Atoms in VMD
  • David Alejandro Rincón Daza (Thu Jan 21 2021 - 20:22:56 CST)
  • Axel Kohlmeyer (Thu Jan 21 2021 - 16:36:16 CST)
  • David Alejandro Rincón Daza (Thu Jan 21 2021 - 15:57:41 CST)
  • Pawel Kedzierski (Wed Jan 20 2021 - 08:19:46 CST)
  • Daniel Fellner (Tue Jan 19 2021 - 19:47:08 CST)
  • David Alejandro Rincón Daza (Tue Jan 19 2021 - 16:27:44 CST)
• Fwd: obscurity in sbcg tutorial description
  • Francesco Pietra (Sat Jan 09 2010 - 16:01:21 CST)
• Fwd: paratool - parameter generation from gaussian log files
  • Nuno Sousa Cerqueira (Thu Dec 10 2009 - 01:05:51 CST)
• Fwd: parseFEP domain error
  • Brian Radak (Mon Mar 05 2018 - 15:43:15 CST)
  • Francesco Pietra (Mon Mar 05 2018 - 14:17:56 CST)
  • Francesco Pietra (Sat Mar 03 2018 - 11:44:06 CST)
• Fwd: ParseFEP for restating FEP
  • Brian Radak (Mon Mar 26 2018 - 16:13:19 CDT)
  • Francesco Pietra (Mon Mar 26 2018 - 15:57:11 CDT)
  • Brian Radak (Mon Mar 26 2018 - 11:57:28 CDT)
  • Francesco Pietra (Fri Mar 23 2018 - 15:31:58 CDT)
  • Brian Radak (Fri Mar 23 2018 - 10:48:17 CDT)
  • Francesco Pietra (Fri Mar 23 2018 - 09:00:15 CDT)
• Fwd: pbc wrap issue
  • René Hafner TUK (Tue Jan 25 2022 - 01:25:13 CST)
  • Aditi Gotkhindikar (Tue Jan 25 2022 - 00:11:51 CST)
• Fwd: PDB Bonds versus "distance" bonds
  • John Stone (Thu Jul 17 2008 - 09:24:55 CDT)
  • Sergey Ivanov (Thu Jul 17 2008 - 08:14:39 CDT)
  • John Stone (Tue Jul 15 2008 - 13:00:42 CDT)
  • Axel Kohlmeyer (Tue Jul 15 2008 - 11:20:53 CDT)
  • Sergey Ivanov (Tue Jul 15 2008 - 10:49:43 CDT)
• Fwd: Pdb file generation,bad water removal and coordinates of psf.
  • madhumita das (Wed Sep 07 2011 - 20:24:47 CDT)
• Fwd: peptide builder
  • Peter Freddolino (Fri Sep 07 2007 - 11:36:45 CDT)
  • L. Michel Espinoza-Fonseca (Fri Sep 07 2007 - 11:35:39 CDT)
• Fwd: Postdoctoral position available in Molecular Modeling
  • John Stone (Fri Feb 14 2003 - 13:27:31 CST)
• Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: ???OSPModel??? does not name a typ
  • John Stone (Fri Feb 24 2023 - 20:03:54 CST)
• Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: ‘OSPModel’ does not name a typ
  • Alexander Beerhoff (Fri Feb 24 2023 - 16:09:58 CST)
  • Vermaas, Josh (Fri Feb 24 2023 - 00:19:28 CST)
  • Axel Kohlmeyer (Thu Feb 23 2023 - 23:55:57 CST)
  • Alexander Beerhoff (Thu Feb 23 2023 - 22:47:16 CST)
• Fwd: Problem with cartoon and secondary structure
  • Francisco José Taberner Sanchis (Tue May 03 2011 - 03:26:18 CDT)
• Fwd: Problem with Loading Bond Angle Optimization Gaussian .log file into the fftk
  • JC Gumbart (Fri Nov 03 2017 - 10:39:20 CDT)
  • Matt Albertolle (Thu Nov 02 2017 - 09:27:35 CDT)
  • Matt Albertolle (Mon Oct 23 2017 - 18:40:54 CDT)
  • JC Gumbart (Fri Oct 20 2017 - 17:15:01 CDT)
  • Matt Albertolle (Thu Oct 12 2017 - 11:30:04 CDT)
• Fwd: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A)
  • Rangeen Othman (Wed Nov 26 2014 - 11:09:20 CST)
• Fwd: Problem with QwikMD analysis
  • Ranabir Majumder (Wed Mar 03 2021 - 07:14:13 CST)
  • Mariano Spivak (Mon Mar 01 2021 - 15:25:19 CST)
  • Ranabir Majumder (Mon Mar 01 2021 - 13:29:03 CST)
• Fwd: problemas con la opt de los enlaces
  • dalpizar_at_fbio.uh.cu (Wed Jul 18 2018 - 10:38:52 CDT)
  • JC Gumbart (Wed Jul 18 2018 - 09:02:33 CDT)
  • JC Gumbart (Tue Jul 17 2018 - 16:46:10 CDT)
  • Fotis Baltoumas (Tue Jul 17 2018 - 16:30:45 CDT)
  • dalpizar_at_fbio.uh.cu (Tue Jul 17 2018 - 15:05:07 CDT)
• Fwd: Problems with charmm36 modified nucleotides for psfgen and namd
  • Francesco Pietra (Thu Jan 20 2022 - 08:43:12 CST)
  • Francesco Pietra (Thu Jan 20 2022 - 08:31:36 CST)
• Fwd: Protein backbone representation for non standard residues / molecules
  • Dallas Warren (Wed Mar 28 2018 - 22:21:46 CDT)
• Fwd: psfgen patching protein-ligand
  • Francesco Pietra (Mon Nov 12 2018 - 10:27:33 CST)
  • Francesco Pietra (Mon Oct 22 2018 - 12:07:43 CDT)
• Fwd: Query for eliminating proteins with unusual amino acids
  • Akshay Bhatnagar (Thu Nov 05 2015 - 18:19:18 CST)
• Fwd: Question regarding HBond analysis
  • Ganesh Kamath (Tue Jan 17 2012 - 12:26:01 CST)
• Fwd: Reading chemical bonds by VMD from AMBER parm7 files
  • Francesco Pietra (Mon Feb 02 2015 - 14:16:08 CST)
  • John Stone (Mon Feb 02 2015 - 11:30:53 CST)
  • Francesco Pietra (Sat Jan 31 2015 - 15:42:05 CST)
• Fwd: regarding FFTK
  • surya narayanan chandrasekaran (Thu May 30 2013 - 09:26:58 CDT)
• Fwd: Removing all non polar hydrogens
  • Josh Vermaas (Sat Jun 27 2015 - 19:42:45 CDT)
  • Francesco Pietra (Sat Jun 27 2015 - 01:46:05 CDT)
• Fwd: Research Position at Acellera, Barcelona
  • João M. Damas (Thu Nov 03 2016 - 08:26:49 CDT)
• Fwd: Restraining selected atoms with multimer
  • Francesco Pietra (Wed Nov 04 2020 - 04:46:42 CST)
• Fwd: Restraints on coarse grained model
  • Francesco Pietra (Wed Dec 09 2009 - 03:07:36 CST)
• Fwd: RMSD pluging error
  • Joao Ribeiro (Mon Jan 06 2020 - 09:20:56 CST)
  • Francesco Pietra (Mon Dec 30 2019 - 10:21:28 CST)
• Fwd: Saved project and paratool
  • Francesco Pietra (Fri Sep 23 2011 - 06:00:05 CDT)
• Fwd: sbcg with multimers
  • Francesco Pietra (Thu Dec 31 2009 - 04:40:14 CST)
• Fwd: scripts CGTools
  • menica dibenedetto (Fri Feb 18 2011 - 06:39:29 CST)
• Fwd: Segmentation fault (core dump)
  • Nima Soltani (Fri Mar 13 2015 - 16:00:30 CDT)
  • John Stone (Fri Mar 13 2015 - 16:14:13 CDT)
• Fwd: spacial distribution function
  • L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:54:53 CST)
• Fwd: superimposing molecules
  • John Stone (Tue Sep 24 2002 - 14:23:24 CDT)
• Fwd: Tcl script
  • Axel Kohlmeyer (Tue Jan 20 2009 - 08:49:21 CST)
  • Roman Petrenko (Tue Jan 20 2009 - 06:24:37 CST)
  • varsha gautham (Tue Jan 20 2009 - 02:11:56 CST)
• Fwd: Termination when using QuickSurf, libGL no version info, and CUDA Error in start up
  • Dallas Warren (Tue Mar 07 2017 - 19:36:13 CST)
  • Dallas Warren (Tue Mar 07 2017 - 19:21:08 CST)
  • Dallas Warren (Tue Mar 07 2017 - 19:31:27 CST)
  • Dallas Warren (Mon Mar 06 2017 - 22:08:56 CST)
  • Dallas Warren (Mon Mar 06 2017 - 21:09:54 CST)
  • Dallas Warren (Mon Mar 06 2017 - 20:12:11 CST)
  • Vermaas, Joshua (Wed Mar 01 2017 - 10:35:37 CST)
  • Dallas Warren (Tue Feb 28 2017 - 19:08:46 CST)
  • John Stone (Tue Feb 28 2017 - 12:53:46 CST)
  • Dallas Warren (Mon Feb 27 2017 - 18:32:54 CST)
• Fwd: TIP4P and CHARMM27
  • Francesco Pietra (Fri Nov 27 2015 - 09:17:35 CST)
• Fwd: To delete some angles via VMD
  • Axel Kohlmeyer (Thu Jan 29 2015 - 06:45:34 CST)
  • Majid Shahbabaei (Wed Jan 28 2015 - 23:09:54 CST)
• Fwd: To delete some atoms via VMD
  • Axel Kohlmeyer (Tue Feb 10 2015 - 22:34:17 CST)
  • Majid Shahbabaei (Tue Feb 10 2015 - 21:51:56 CST)
  • John Stone (Tue Feb 10 2015 - 09:59:49 CST)
  • Majid Shahbabaei (Tue Feb 10 2015 - 05:28:31 CST)
• Fwd: Topotools to keep atomtypes same
  • Vaidyanathan Sethuraman (Wed Nov 01 2017 - 22:40:07 CDT)
  • Axel Kohlmeyer (Wed Nov 01 2017 - 21:03:27 CDT)
  • Axel Kohlmeyer (Wed Nov 01 2017 - 17:38:50 CDT)
  • Vaidyanathan Sethuraman (Wed Nov 01 2017 - 16:34:33 CDT)
• Fwd: topotools/topogromacs
  • Francesco Pietra (Wed Jun 13 2018 - 09:35:04 CDT)
• Fwd: trajectory_path.tcl queries
  • Axel Kohlmeyer (Sun Mar 14 2010 - 10:10:02 CDT)
  • Francesco Pietra (Sun Mar 14 2010 - 04:51:02 CDT)
• Fwd: troubles with openGL
  • Stefano Guglielmo (Tue Jul 05 2016 - 13:19:24 CDT)
  • John Stone (Tue Jun 28 2016 - 11:43:21 CDT)
  • Stefano Guglielmo (Fri Jun 24 2016 - 03:16:22 CDT)
• Fwd: Unknown atom type CG205 with CGenFF by psfgen
  • Francesco Pietra (Fri Oct 26 2018 - 14:30:59 CDT)
  • Gumbart, James C (Fri Oct 26 2018 - 12:06:15 CDT)
  • Francesco Pietra (Fri Oct 26 2018 - 10:11:20 CDT)
• Fwd: unwap/wrap failure in recomposing splitted system from periodic cells
  • Francesco Pietra (Fri Jun 12 2015 - 10:57:06 CDT)
  • Josh Vermaas (Fri Jun 12 2015 - 11:20:26 CDT)
  • Francesco Pietra (Fri Jun 12 2015 - 11:13:50 CDT)
• Fwd: version 1.8.7 for amd64 and cg tools
  • Francesco Pietra (Thu Nov 12 2009 - 23:33:42 CST)
  • John Stone (Thu Nov 12 2009 - 23:40:32 CST)
• Fwd: Visualizing the displacement vector
  • Adam Goler (Fri Jul 04 2014 - 11:18:10 CDT)
  • Axel Kohlmeyer (Fri Jul 04 2014 - 10:47:12 CDT)
  • Axel Kohlmeyer (Fri Jul 04 2014 - 10:50:03 CDT)
  • karthik kumar (Fri Jul 04 2014 - 09:28:07 CDT)
• Fwd: Visulizing subunits
  • Francesco Pietra (Wed Feb 12 2020 - 11:14:57 CST)
  • John Stone (Wed Feb 12 2020 - 09:52:36 CST)
  • Francesco Pietra (Wed Feb 12 2020 - 04:19:01 CST)
  • Francesco Pietra (Wed Feb 12 2020 - 02:21:55 CST)
  • John Stone (Tue Feb 11 2020 - 10:41:58 CST)
  • Francesco Pietra (Tue Feb 11 2020 - 10:10:07 CST)
• Fwd: VMD 1.9.2 released!
  • Josh Vermaas (Mon Jan 12 2015 - 11:40:34 CST)
  • John Stone (Mon Jan 12 2015 - 11:35:35 CST)
  • Axel Kohlmeyer (Mon Jan 12 2015 - 11:10:34 CST)
  • John Stone (Mon Jan 12 2015 - 10:37:35 CST)
• Fwd: VMD Compile problem
  • Nima Nouri (Mon Oct 06 2014 - 16:51:59 CDT)
• Fwd: VMD Crash with Ubuntu 12.04 LTS and NVidia 310.44 driver.
  • John Stone (Tue May 07 2013 - 08:19:15 CDT)
  • Aric Newton (Sun May 05 2013 - 10:32:15 CDT)
  • Francesco Pietra (Sat May 04 2013 - 01:37:42 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Fri May 03 2013 - 13:36:24 CDT)
• Fwd: vmd first installation
  • Francesco Pietra (Fri May 11 2007 - 11:05:08 CDT)
  • John Stone (Fri May 11 2007 - 10:51:53 CDT)
  • Axel Kohlmeyer (Fri May 11 2007 - 07:21:43 CDT)
  • Francesco Pietra (Fri May 11 2007 - 02:50:29 CDT)
  • Axel Kohlmeyer (Wed May 09 2007 - 16:41:10 CDT)
  • Francesco Pietra (Wed May 09 2007 - 16:59:08 CDT)
• Fwd: vmd installation Linux Debian i386
  • Axel Kohlmeyer (Tue Jun 05 2007 - 17:43:49 CDT)
  • Francesco Pietra (Tue Jun 05 2007 - 17:47:06 CDT)
  • John Stone (Tue Jun 05 2007 - 13:02:26 CDT)
  • Francesco Pietra (Tue Jun 05 2007 - 12:55:05 CDT)
• Fwd: Vmd molecule rotation and translation
  • Anna (Mon Aug 08 2011 - 19:45:53 CDT)
• Fwd: VMD Stereo does not work Quadbufferd
  • Mark Cunningham (Fri May 11 2012 - 09:54:45 CDT)
  • Christian Wohlschlager (Fri May 11 2012 - 03:45:12 CDT)
  • John Stone (Mon May 07 2012 - 03:03:38 CDT)
  • Christian Wohlschlager (Mon May 07 2012 - 02:46:23 CDT)
• Fwd: VMD Timeline Plug-in Selection in Hydrogen Bonds Calculations
  • Ebru Cetin (Wed May 26 2021 - 04:33:46 CDT)
• Fwd: vmd-1
  • João Ribeiro (Tue Apr 11 2017 - 07:50:39 CDT)
  • Sharav Desai (Tue Apr 11 2017 - 03:32:09 CDT)
• Fwd: vmd1.9.23 rlwrap: No match
  • Strahs, Dr. Daniel Bernard (Sat Dec 17 2016 - 17:28:33 CST)
  • Strahs, Dr. Daniel Bernard (Sat Dec 17 2016 - 15:23:08 CST)
  • Chitrak Gupta (Sat Dec 17 2016 - 13:14:38 CST)
  • Francesco Pietra (Sat Dec 17 2016 - 02:42:26 CST)
  • John Stone (Fri Dec 16 2016 - 14:14:50 CST)
  • Francesco Pietra (Fri Dec 16 2016 - 03:49:21 CST)
• Fwd: Writing pdb without chain identifier
  • John Stone (Wed Jan 03 2007 - 10:31:05 CST)
• FYI: (for OSX version) a document about shell script and applescript
  • MengJuei Hsieh (Tue Jan 28 2003 - 17:13:41 CST)
• FYI: 1.8.6 runs full GLSL on AMD64
  • John Stone (Wed Aug 22 2007 - 22:55:06 CDT)
  • John Stone (Wed Aug 22 2007 - 13:40:37 CDT)
• FYI: cause of a common Windows VMD install error message...
  • John Stone (Thu Apr 07 2005 - 13:01:43 CDT)
• FYI: vmd & vrpn v7.0b5
  • John Stone (Wed Dec 21 2005 - 09:57:26 CST)
  • Marc Baaden (Wed Dec 21 2005 - 05:25:11 CST)
• FYI:CCL:md rookie update (fwd)
  • root (Thu Jan 08 1998 - 12:42:37 CST)
• g(r)
  • Axel Kohlmeyer (Thu Jul 31 2008 - 08:57:34 CDT)
  • Rudra Banerjee (Thu Jul 31 2008 - 00:46:01 CDT)
  • Axel Kohlmeyer (Wed Jul 30 2008 - 14:31:55 CDT)
  • Rudra Banerjee (Wed Jul 30 2008 - 12:13:40 CDT)
• G(r) tcl script not including intramolecular correlations
  • Hall, Lisa Michelle (Fri May 07 2010 - 10:46:27 CDT)
  • Axel Kohlmeyer (Thu May 06 2010 - 19:46:26 CDT)
  • Hall, Lisa Michelle (Thu May 06 2010 - 18:12:49 CDT)
• g03 output and editing features for VMD
  • John Stone (Mon Aug 30 2004 - 11:18:25 CDT)
  • Vlad Cojocaru (Mon Aug 30 2004 - 11:03:41 CDT)
• gamepad on linux?
  • John Stone (Wed Apr 02 2003 - 11:15:44 CST)
  • Dr. Daniel James White PhD (Wed Apr 02 2003 - 10:52:15 CST)
• Gamepads and VMD (and MacOSX and ForceFeedback)
  • John Stone (Mon May 15 2006 - 12:04:35 CDT)
  • Marc Baaden (Fri May 12 2006 - 10:13:46 CDT)
• GAMESS plugin bus error
  • Ralph Jimenez (Wed Mar 28 2007 - 15:11:17 CDT)
• gamess plugin error of vmd 1.8.4a22 on windows
  • John Stone (Fri Oct 28 2005 - 12:04:37 CDT)
  • John Stone (Mon Oct 17 2005 - 15:03:37 CDT)
  • mashaojie163 (Sat Oct 15 2005 - 01:20:40 CDT)
  • mashaojie163 (Mon Oct 17 2005 - 06:53:53 CDT)
• gamess plugin error when using symmetry operations
  • mashaojienuaa (Fri May 26 2006 - 20:49:03 CDT)
  • mashaojienuaa (Thu May 25 2006 - 01:56:08 CDT)
  • John Stone (Tue May 23 2006 - 13:02:30 CDT)
  • mashaojienuaa (Tue May 23 2006 - 10:02:36 CDT)
  • mashaojienuaa (Sun May 21 2006 - 21:12:20 CDT)
• gamess plungin for PC Gamess
  • John Stone (Tue Nov 07 2006 - 15:34:33 CST)
  • mashaojie163 (Tue Nov 07 2006 - 01:00:58 CST)
• Gamma Silicon Nitrite Crystal - Reg
  • Mani Kandan (Mon Jul 09 2018 - 12:48:32 CDT)
• Gas migration pathway
  • Vermaas, Joshua (Wed Nov 08 2017 - 14:19:21 CST)
  • Lizelle Lubbe (Wed Nov 08 2017 - 12:43:15 CST)
• Gaussian *.log/out visualize
  • Parvez Mh (Sun Mar 27 2016 - 20:04:01 CDT)
  • Parvez Mh (Mon Mar 21 2016 - 18:26:47 CDT)
  • Mayne, Christopher G (Fri Mar 18 2016 - 09:35:59 CDT)
  • Parvez Mh (Thu Mar 17 2016 - 17:57:44 CDT)
• Gaussian aborting during ffTK - Calc.Bonded
  • Jason Smith (Wed Nov 25 2020 - 23:18:10 CST)
• Gaussian Cube file with VMD
  • Axel Kohlmeyer (Tue May 23 2006 - 15:34:04 CDT)
  • John Stone (Tue May 23 2006 - 13:14:29 CDT)
  • Berit Hinnemann (Tue May 23 2006 - 11:00:36 CDT)
  • Axel Kohlmeyer (Mon May 22 2006 - 23:25:18 CDT)
  • Berit Hinnemann (Mon May 22 2006 - 18:29:12 CDT)
• Gaussian Log File problem
  • Mayne, Christopher G (Thu Apr 03 2014 - 22:15:04 CDT)
  • Hay, Stuart (Thu Apr 03 2014 - 12:35:55 CDT)
• Gaussian run for ffTK: Solvation needed?
  • Mayne, Christopher G (Wed Oct 22 2014 - 09:14:49 CDT)
  • Zeinab Emami (Wed Oct 22 2014 - 09:00:53 CDT)
• Gaussian03 output
  • Vlad Cojocaru (Tue Aug 24 2004 - 10:09:27 CDT)
• Gaussian09 install on macOS Inquiry
  • Joel Subach (Fri Apr 14 2023 - 02:49:28 CDT)
  • Gumbart, JC (Thu Apr 13 2023 - 12:14:05 CDT)
  • Joel Subach (Thu Apr 13 2023 - 11:06:06 CDT)
  • Joel Subach (Wed Apr 12 2023 - 01:28:05 CDT)
  • Gumbart, JC (Wed Apr 12 2023 - 01:03:13 CDT)
  • Joel Subach (Tue Apr 11 2023 - 23:19:34 CDT)
  • Gumbart, JC (Tue Apr 11 2023 - 21:36:48 CDT)
  • Joel Subach (Tue Apr 11 2023 - 10:37:57 CDT)
  • Giacomo Fiorin (Tue Apr 11 2023 - 10:29:57 CDT)
  • Joel Subach (Tue Apr 11 2023 - 10:10:13 CDT)
  • Giacomo Fiorin (Tue Apr 11 2023 - 10:03:39 CDT)
  • Axel Kohlmeyer (Tue Apr 11 2023 - 08:43:23 CDT)
  • Axel Kohlmeyer (Tue Apr 11 2023 - 08:31:28 CDT)
  • Joel Subach (Tue Apr 11 2023 - 08:35:27 CDT)
  • Joel Subach (Tue Apr 11 2023 - 07:47:02 CDT)
• Gaussian16 support issue of ffTK
  • Gawtak Kim (Thu Feb 06 2020 - 22:19:58 CST)
  • JC Gumbart (Thu Feb 06 2020 - 19:58:52 CST)
  • Gawtak Kim (Wed Feb 05 2020 - 23:13:25 CST)
  • David Sáez (Wed Feb 05 2020 - 11:45:41 CST)
  • giuseppe_at_ks.uiuc.edu (Wed Feb 05 2020 - 10:09:08 CST)
  • David Sáez (Wed Feb 05 2020 - 04:07:17 CST)
  • Gawtak Kim (Wed Feb 05 2020 - 01:31:49 CST)
• gaussinan_log_file_error_can't use empty string as operand of "/"
  • Karol Kaszuba (Tue Nov 27 2007 - 03:28:04 CST)
• GBIS in NAMD 2.10 CUDA with IMD
  • John Stone (Wed Feb 11 2015 - 10:03:39 CST)
  • Tristan Croll (Wed Feb 11 2015 - 04:18:11 CST)
• GBIS parameters
  • John Stone (Wed Oct 02 2019 - 09:30:35 CDT)
  • Paula Mihaljevic-Juric (Wed Oct 02 2019 - 07:24:17 CDT)
• Geforce 3 DRI crashes
  • Stéphane Teletchéa (Wed Apr 10 2002 - 04:10:21 CDT)
  • John Stone (Tue Apr 09 2002 - 13:07:18 CDT)
  • John Stone (Tue Apr 09 2002 - 09:57:55 CDT)
  • Mikko Huhtala (Tue Apr 09 2002 - 08:37:11 CDT)
• GeForce FX5800 and VMD 1.8.1
  • Joost Van Durme (Thu Jun 05 2003 - 12:19:59 CDT)
• General query on MD
  • Peter Freddolino (Fri Jan 20 2006 - 09:06:49 CST)
  • Lin (Wed Jan 18 2006 - 23:31:06 CST)
• General question about the memory usage of VMD
  • gurunath katagi (Mon Jan 26 2009 - 03:10:56 CST)
  • John Stone (Mon Nov 24 2008 - 11:00:33 CST)
  • Axel Kohlmeyer (Mon Nov 17 2008 - 14:31:02 CST)
  • Robert Brunner (Mon Nov 17 2008 - 14:42:45 CST)
  • tinifcarter_at_gmail.com (Mon Nov 17 2008 - 11:48:00 CST)
• Generalisation of chirality plugin to handle chiral bonds spanning residues
  • Tristan Croll (Wed Mar 05 2014 - 05:48:46 CST)
• Generate a PSF file for small, simple molecules
  • Ajasja LjubetiÄ� (Fri Apr 01 2011 - 02:15:51 CDT)
  • THANH NGUYEN (Thu Mar 31 2011 - 17:46:44 CDT)
  • John Stone (Thu Mar 31 2011 - 14:59:37 CDT)
  • THANH NGUYEN (Mon Mar 28 2011 - 19:11:42 CDT)
• generate nanotube other than CNT
  • Sundararajan Natarajan (Mon Apr 15 2013 - 04:50:46 CDT)
  • Axel Kohlmeyer (Mon Apr 15 2013 - 04:33:04 CDT)
  • Sundararajan Natarajan (Mon Apr 15 2013 - 04:02:27 CDT)
  • Axel Kohlmeyer (Mon Apr 15 2013 - 03:31:34 CDT)
  • Sundararajan Natarajan (Tue Apr 02 2013 - 14:06:48 CDT)
  • Axel Kohlmeyer (Tue Apr 02 2013 - 07:20:55 CDT)
  • Sundararajan Natarajan (Tue Apr 02 2013 - 06:26:43 CDT)
• generate parameter and topology file
  • Josh Vermaas (Mon Nov 04 2013 - 16:35:20 CST)
  • Ramin Ekhteiari (Mon Nov 04 2013 - 13:51:29 CST)
• Generate psf file for cyclic peptide
  • Tu.Le_at_csiro.au (Mon May 02 2011 - 22:33:01 CDT)
• generate psf structure
  • Axel Kohlmeyer (Sun Sep 07 2008 - 13:50:39 CDT)
  • Rudra Banerjee (Sat Sep 06 2008 - 04:15:25 CDT)
• Generate QM Region Topology in QwikMD for metal ions to perform QM/MM
  • Joao Ribeiro (Tue Jul 16 2019 - 09:29:31 CDT)
  • Umut Gerlevik (Tue Jul 16 2019 - 05:56:15 CDT)
• generate surface figure
  • Axel Kohlmeyer (Thu Jun 28 2007 - 12:25:30 CDT)
  • Zhenwei Lu (Thu Jun 28 2007 - 11:54:31 CDT)
• Generate Trajectory using Gaussian Cube Files
  • Jia-Yang Lim (Tue Sep 19 2023 - 23:51:39 CDT)
• generated pdb file via vmd
  • flavio seixas (Thu Dec 12 2013 - 16:22:45 CST)
  • Axel Kohlmeyer (Wed Dec 11 2013 - 07:21:06 CST)
  • Ramin Ekhteiari (Wed Dec 11 2013 - 04:26:39 CST)
• generatei psf file for a dimer protein
  • Josh Vermaas (Tue Apr 01 2014 - 09:30:24 CDT)
  • Ramin Ekhteiari (Tue Apr 01 2014 - 08:24:33 CDT)
• Generatin PSF for alkanes
  • Peter Freddolino (Sun Nov 11 2007 - 11:02:52 CST)
  • Axel Kohlmeyer (Sun Nov 11 2007 - 00:54:50 CST)
  • Santanu Chatterjee (Sat Nov 10 2007 - 22:38:55 CST)
• generating
  • Axel Kohlmeyer (Tue Feb 20 2007 - 14:45:27 CST)
  • PREETA DATTA (Tue Feb 20 2007 - 14:30:11 CST)
  • Axel Kohlmeyer (Tue Feb 20 2007 - 09:05:44 CST)
  • PREETA DATTA (Tue Feb 20 2007 - 07:19:13 CST)
• Generating .top and .crd using VMD
  • manikanthan bhavaraju (Mon Jun 17 2013 - 10:18:25 CDT)
• generating .xsc file from .dcd
  • John Stone (Tue Dec 01 2009 - 10:07:57 CST)
  • Neelanjana Sengupta (Mon Nov 30 2009 - 04:19:43 CST)
• generating .xsc files using periodic information
  • Neelanjana Sengupta (Tue Apr 26 2011 - 23:07:07 CDT)
  • Jim Phillips (Tue Apr 26 2011 - 23:16:46 CDT)
  • Jim Phillips (Tue Apr 26 2011 - 11:35:43 CDT)
  • Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
  • John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
  • Neelanjana Sengupta (Wed Apr 20 2011 - 07:06:04 CDT)
• generating a huge number of water molecules
  • John Stone (Thu Jan 19 2006 - 14:40:22 CST)
  • Morad Alawneh (Thu Jan 12 2006 - 12:11:19 CST)
• Generating a psf file using VMD
  • John Stone (Mon Jan 23 2012 - 10:58:38 CST)
  • Axel Kohlmeyer (Thu Jan 19 2012 - 17:55:01 CST)
  • Ganesh Kamath (Thu Jan 19 2012 - 16:56:47 CST)
• Generating a PSF for a Non-protien
  • John Stone (Wed Mar 03 2010 - 10:47:52 CST)
  • Aziz, John (Mon Mar 01 2010 - 08:27:10 CST)
• Generating an average structure from a trajectory
  • Brian Bennion (Fri Sep 16 2005 - 18:22:43 CDT)
  • Luis Gracia (Fri Sep 16 2005 - 16:24:51 CDT)
  • John Stone (Fri Sep 16 2005 - 15:38:06 CDT)
  • Kara Di Giorgio (Fri Sep 16 2005 - 13:01:34 CDT)
• generating autopsf
  • Tahmina Akter (Wed Jun 29 2016 - 12:07:10 CDT)
  • Ashar Malik (Wed Jun 29 2016 - 11:30:14 CDT)
  • Tahmina Akter (Wed Jun 29 2016 - 10:30:56 CDT)
  • Pawel Kedzierski (Tue Jun 28 2016 - 15:10:23 CDT)
  • Ashar Malik (Tue Jun 28 2016 - 13:50:48 CDT)
  • Tahmina Akter (Tue Jun 28 2016 - 13:07:20 CDT)
• generating COORDINATE FILES
  • PREETA DATTA (Tue Feb 20 2007 - 05:48:41 CST)
• Generating Images for Several Structures
  • John Stone (Thu Feb 06 2020 - 20:20:54 CST)
  • Thyagarajan, Raghuram (Thu Feb 06 2020 - 14:08:34 CST)
• generating images without shading
  • Vermaas, Joshua (Wed Sep 07 2016 - 13:20:54 CDT)
  • John Stone (Wed Sep 07 2016 - 13:10:35 CDT)
  • Vermaas, Joshua (Wed Sep 07 2016 - 12:53:01 CDT)
  • John Stone (Wed Sep 07 2016 - 13:12:29 CDT)
  • John Stone (Wed Sep 07 2016 - 11:35:47 CDT)
  • Ky Wildermuth (Wed Aug 31 2016 - 15:37:42 CDT)
  • Eric Smoll (Wed Aug 31 2016 - 13:52:43 CDT)
• generating lipid membrane psf file
  • Ajasja LjubetiÄ� (Sat Dec 04 2010 - 14:57:11 CST)
  • Axel Kohlmeyer (Thu Dec 02 2010 - 10:39:53 CST)
  • Patrick Fleming (Thu Dec 02 2010 - 07:15:22 CST)
• Generating more than 100,000 water molecules
  • John Stone (Tue Jan 24 2006 - 15:26:18 CST)
  • Jindal Shah (Tue Jan 24 2006 - 15:06:15 CST)
• Generating nanotubes psf file
  • Axel Kohlmeyer (Mon Apr 05 2010 - 16:05:34 CDT)
  • Ranyere Deyler (Mon Apr 05 2010 - 15:47:24 CDT)
  • Axel Kohlmeyer (Mon Apr 05 2010 - 14:30:21 CDT)
  • Ronald Salesky (Mon Apr 05 2010 - 14:33:44 CDT)
  • Ranyere Deyler (Mon Apr 05 2010 - 14:06:38 CDT)
  • Axel Kohlmeyer (Mon Apr 05 2010 - 11:56:07 CDT)
  • Ranyere Deyler (Mon Apr 05 2010 - 11:33:46 CDT)
  • Axel Kohlmeyer (Mon Apr 05 2010 - 09:52:55 CDT)
  • Ranyere Deyler (Mon Apr 05 2010 - 08:58:55 CDT)
• Generating parameter file for Cl2-
  • John Stone (Mon Oct 15 2007 - 15:22:08 CDT)
  • Per Jr. Greisen (Mon Oct 15 2007 - 10:39:36 CDT)
• Generating parameter files
  • Pawel Kedzierski (Wed May 19 2021 - 15:00:34 CDT)
  • Smith, Harper E. (Wed May 19 2021 - 13:01:13 CDT)
  • Arthur Pereira da Fonseca (Wed May 19 2021 - 12:04:33 CDT)
• generating psf file for a lipid: vmd looking for c-term and n-term ?
  • Peter Freddolino (Tue Dec 05 2006 - 15:57:09 CST)
  • Mohamed Osman (Tue Dec 05 2006 - 15:45:45 CST)
• generating PSF file for a small molecule
  • Ranyere Deyler (Sun May 23 2010 - 15:52:11 CDT)
  • Hassan Shallal (Sun May 23 2010 - 03:53:58 CDT)
• generating psf files for bicarbonate
  • JC Gumbart (Fri Jun 22 2012 - 23:32:42 CDT)
  • flavio seixas (Fri Jun 22 2012 - 13:21:35 CDT)
  • Traci Clymer (Fri Jun 22 2012 - 09:13:36 CDT)
• Generating PSF for 1JNO.pdb chain A
  • Ramin Ekhteiari (Tue Jul 24 2012 - 06:57:42 CDT)
  • Lin (Fri Apr 14 2006 - 10:29:07 CDT)
  • Lin (Fri Mar 24 2006 - 08:29:01 CST)
• Generating PSF for several proteins in one shot
  • Tristan Croll (Sat Aug 08 2015 - 23:14:31 CDT)
  • Tristan Croll (Sat Aug 08 2015 - 04:55:19 CDT)
  • Akshay Bhatnagar (Sat Aug 08 2015 - 03:35:47 CDT)
  • Tristan Croll (Tue Jul 28 2015 - 01:16:02 CDT)
  • Akshay Bhatnagar (Tue Jul 28 2015 - 01:10:19 CDT)
  • Tristan Croll (Fri Jul 24 2015 - 18:00:32 CDT)
  • Felipe Merino (Fri Jul 24 2015 - 07:12:09 CDT)
  • Akshay Bhatnagar (Fri Jul 24 2015 - 02:29:08 CDT)
  • Matthew Stewart (Fri Jul 24 2015 - 01:25:58 CDT)
  • Akshay Bhatnagar (Thu Jul 23 2015 - 23:33:56 CDT)
  • Josh Vermaas (Tue Jul 21 2015 - 13:44:49 CDT)
  • Ashar Malik (Tue Jul 21 2015 - 02:33:02 CDT)
  • Akshay Bhatnagar (Tue Jul 21 2015 - 02:04:36 CDT)
• Generating psf for uranyl ion
  • Josh Vermaas (Mon Jun 15 2015 - 11:28:14 CDT)
  • Axel Kohlmeyer (Mon Jun 15 2015 - 11:10:14 CDT)
  • Sakinah Ellickson (Mon Jun 15 2015 - 10:55:08 CDT)
• Generating psfgen of multimeric protein complex
  • Peter Freddolino (Tue Apr 18 2006 - 09:29:09 CDT)
  • Per Jr. Greisen (Tue Apr 18 2006 - 04:35:50 CDT)
• Generating silanol group on silica
  • Javier Ivan Wong Romero (Tue Oct 12 2021 - 18:40:44 CDT)
• Generating single amino acid using PSFGEN
  • PaweÅ‚ KÄ™dzierski (Sat Dec 03 2022 - 05:19:10 CST)
  • Huang, Caleb (Fri Dec 02 2022 - 16:23:54 CST)
• Generating Topo Bond Data from LAMMPS Data File
  • Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:30:52 CDT)
  • Axel Kohlmeyer (Wed Apr 20 2011 - 11:17:34 CDT)
  • Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 10:23:29 CDT)
• Generating water transparency around a protein
  • Peter Freddolino (Fri Sep 14 2007 - 07:18:45 CDT)
  • Jeffry D Madura (Fri Sep 14 2007 - 06:31:14 CDT)
• generation of amber topology of Carbon nanotube
  • Shilpa Gupta (Mon Sep 09 2019 - 07:08:58 CDT)
• generation of psf of phenol
  • Tristan Croll (Thu Aug 22 2013 - 21:21:03 CDT)
  • Asaf Farhi (Thu Aug 22 2013 - 11:42:14 CDT)
• genetaring psf file for HEME ( hemoglobin)
  • Ajasja LjubetiÄ� (Tue Nov 05 2013 - 04:30:53 CST)
  • Ramin Ekhteiari (Tue Nov 05 2013 - 03:15:07 CST)
• Genrating psf
  • Per Jr. Greisen (Wed Mar 29 2006 - 10:50:38 CST)
• geometric location of amino acids in proteins
  • John Stone (Tue Jul 12 2005 - 17:59:40 CDT)
  • sankari thirumal (Wed Jul 06 2005 - 00:04:10 CDT)
• geometry optimization with SQM
  • Peter Freddolino (Thu Dec 08 2016 - 16:31:52 CST)
  • Fotis Baltoumas (Thu Dec 08 2016 - 13:26:21 CST)
  • M.H. Taheri (Thu Dec 08 2016 - 10:43:29 CST)
• get "x y z" from smoothed coordinates
  • Geist, Norman (Thu Jan 19 2023 - 04:05:29 CST)
  • Diego Gomes (Wed Jan 18 2023 - 15:20:37 CST)
• get a PDB file from DCD file
  • JT (Tue Jan 27 2009 - 11:01:41 CST)
  • Benjamin Bouvier (Tue Jan 27 2009 - 09:49:51 CST)
  • John Stone (Tue Jan 27 2009 - 08:44:32 CST)
  • Axel Kohlmeyer (Tue Jan 27 2009 - 08:42:18 CST)
  • Andres Morales N (Tue Jan 27 2009 - 07:58:23 CST)
• Get atoms in each ring
  • Giacomo Fiorin (Mon May 25 2020 - 12:32:27 CDT)
  • MD Simulation (Mon May 25 2020 - 11:31:12 CDT)
• get average coord. from .pdb file?
  • John Stone (Tue Aug 17 2004 - 13:13:49 CDT)
  • Shirley Li (Mon Aug 16 2004 - 19:33:21 CDT)
  • John Stone (Mon Aug 16 2004 - 15:01:31 CDT)
  • Shirley Li (Fri Aug 13 2004 - 11:43:27 CDT)
• get average structure from dcd file?
  • Philip Fowler (Wed Mar 17 2004 - 03:31:58 CST)
  • li (Mon Mar 17 2008 - 16:24:47 CDT)
• get avg ca distance
  • Murpholino Peligro (Fri Mar 09 2012 - 11:09:08 CST)
  • Ana Celia Vila Verde (Fri Mar 09 2012 - 02:10:56 CST)
  • Murpholino Peligro (Thu Mar 08 2012 - 15:33:19 CST)
• get charge
  • Axel Kohlmeyer (Thu Jun 28 2007 - 12:27:43 CDT)
  • lily jin (Thu Jun 28 2007 - 12:56:46 CDT)
  • John Stone (Thu Jun 28 2007 - 13:07:51 CDT)
• get coordinates
  • Andres Morales N (Sat Sep 12 2009 - 12:05:35 CDT)
  • Axel Kohlmeyer (Sat Sep 12 2009 - 13:01:35 CDT)
• get coordinates for each frame in a trjectory
  • Giacomo Fiorin (Sun Feb 27 2022 - 09:11:40 CST)
  • Alessandro Ruda (Sun Feb 27 2022 - 08:03:44 CST)
• Get empirical formula of fragment
  • MD Simulation (Mon Jul 03 2017 - 14:27:23 CDT)
  • Axel Kohlmeyer (Mon Jul 03 2017 - 14:19:13 CDT)
  • Vermaas, Joshua (Mon Jul 03 2017 - 13:28:39 CDT)
  • MD Simulation (Sat Jul 01 2017 - 20:12:31 CDT)
• Get num. of residues
  • Axel Kohlmeyer (Wed Mar 19 2014 - 02:34:23 CDT)
  • spandu K (Wed Mar 19 2014 - 01:38:44 CDT)
• Get number of fragments
  • Giacomo Fiorin (Mon May 27 2019 - 10:05:02 CDT)
  • Ashar Malik (Mon May 27 2019 - 09:48:23 CDT)
  • MD Simulation (Mon May 27 2019 - 05:57:25 CDT)
• Get objects from precompiled VMD?
  • John Stone (Thu Sep 27 2012 - 09:49:32 CDT)
  • Axel Kohlmeyer (Thu Sep 27 2012 - 06:11:16 CDT)
  • Sabine Reisser (Thu Sep 27 2012 - 04:32:01 CDT)
• Get one of these awesome replicas
  • Rolando Carlson (Sun May 04 2008 - 12:10:27 CDT)
  • Melanie Mcmahon (Fri May 02 2008 - 01:05:03 CDT)
  • Jerry Kiser (Thu Apr 24 2008 - 18:45:18 CDT)
• get Ramachadran plot using textmode
  • John Stone (Fri Dec 23 2011 - 17:46:46 CST)
  • Gurunath Katagi (Fri Dec 09 2011 - 22:00:28 CST)
• get resisue names from atom index number
  • Josh Vermaas (Mon Sep 30 2013 - 10:10:17 CDT)
  • Axel Kohlmeyer (Mon Sep 30 2013 - 03:20:01 CDT)
  • sunyeping (Mon Sep 30 2013 - 02:56:04 CDT)
  • Axel Kohlmeyer (Sun Sep 29 2013 - 09:27:28 CDT)
  • sunyeping (Sun Sep 29 2013 - 01:33:09 CDT)
• get resname from resid
  • sunyeping (Tue Apr 15 2014 - 04:18:38 CDT)
• Get the camera position
  • SAPAY Nicolas 232321 (Wed Nov 30 2011 - 10:20:52 CST)
• get the coordinate of the mouse arrow
  • John Stone (Wed Dec 17 2014 - 10:21:36 CST)
  • Maxim Belkin (Wed Dec 17 2014 - 01:30:56 CST)
  • Xinqiang Ding (Tue Dec 16 2014 - 20:32:58 CST)
  • John Stone (Tue Dec 16 2014 - 20:23:25 CST)
  • Ivan Moncayo (Tue Dec 16 2014 - 17:50:27 CST)
  • Xinqiang Ding (Tue Dec 16 2014 - 17:11:48 CST)
• get values from openDx grid format
  • daniel aguayo (Wed Jan 18 2006 - 12:45:07 CST)
  • John Stone (Tue Jan 17 2006 - 10:46:10 CST)
  • daniel aguayo (Mon Jan 16 2006 - 19:25:57 CST)
  • daniel aguayo (Mon Jan 16 2006 - 19:00:34 CST)
  • daniel aguayo (Sun Jan 15 2006 - 19:33:45 CST)
• get view direction
  • Jacob Kirkensgaard (Tue Feb 16 2010 - 15:21:21 CST)
  • John Stone (Tue Feb 16 2010 - 10:25:37 CST)
  • Axel Kohlmeyer (Tue Feb 16 2010 - 06:21:23 CST)
  • Jacob Kirkensgaard (Tue Feb 16 2010 - 03:58:24 CST)
• Get XST or XSC from NAMDenergy plugin?
  • Aryan Vahedi-Faridi (Sun Aug 02 2015 - 19:30:52 CDT)
• Get your w4tch now Villa
  • Joan Winslow (Thu Jul 24 2008 - 04:40:10 CDT)
• Get your watch now
  • Helena Slater (Wed Apr 23 2008 - 12:17:13 CDT)
• getbonds for H-bonds request
  • Axel Kohlmeyer (Mon Nov 08 2004 - 13:31:35 CST)
  • pl (Mon Nov 08 2004 - 08:10:57 CST)
• Getting (or changing) molinfo matrices
  • John Stone (Fri Jan 26 2007 - 02:07:34 CST)
  • Jancsó István (Thu Jan 25 2007 - 02:29:55 CST)
  • John Stone (Wed Jan 24 2007 - 12:05:08 CST)
  • Jancsó István (Wed Jan 24 2007 - 03:49:28 CST)
• getting centre of mass of contacts
  • John Stone (Mon Oct 10 2005 - 10:30:20 CDT)
  • syma (Mon Oct 10 2005 - 07:13:39 CDT)
• Getting coordinates
  • Axel Kohlmeyer (Tue Dec 05 2006 - 16:37:00 CST)
  • Myunggi Yi (Tue Dec 05 2006 - 15:47:20 CST)
• Getting data as vector or matrix
  • Iman Salehinia (Tue Dec 02 2008 - 00:48:29 CST)
• getting extra number of input file at the charge optimization phase/ ffTK
  • Mayne, Christopher G (Wed Dec 03 2014 - 15:58:46 CST)
  • Zeinab Emami (Wed Dec 03 2014 - 07:04:38 CST)
• getting heavy atom contacts
  • B. Bennion (Thu Mar 20 2003 - 12:40:59 CST)
• Getting history and file completion to work in vmd console ?
  • Paul Grayson (Fri Aug 30 2002 - 10:01:50 CDT)
  • John Stone (Fri Aug 30 2002 - 09:58:28 CDT)
  • Marc Baaden (Fri Aug 30 2002 - 09:48:28 CDT)
  • Paul Grayson (Fri Aug 30 2002 - 09:36:22 CDT)
  • Justin Gullingsrud (Fri Aug 30 2002 - 08:37:04 CDT)
  • Marc Baaden (Fri Aug 30 2002 - 04:02:47 CDT)
• Getting list of arguments for TCL console
  • John Stone (Wed Nov 27 2019 - 09:03:46 CST)
  • Edward Ditler (Wed Nov 27 2019 - 05:22:16 CST)
  • John Stone (Tue Nov 26 2019 - 10:33:10 CST)
  • Gianfranco Abrusci (Tue Nov 26 2019 - 04:20:29 CST)
  • Edward Ditler (Tue Nov 26 2019 - 02:23:58 CST)
• getting list of correct indices?
  • Crystal Liu (Thu Aug 18 2016 - 17:00:29 CDT)
  • Olya Kravchenko (Thu Aug 18 2016 - 17:01:15 CDT)
  • Chitrak Gupta (Thu Aug 18 2016 - 16:07:18 CDT)
  • Olya Kravchenko (Thu Aug 18 2016 - 15:37:55 CDT)
  • Olya Kravchenko (Thu Aug 18 2016 - 14:54:16 CDT)
• getting other variables out of LAMMPS ascii dump files
  • Dan Lussier (Thu Jul 16 2009 - 04:46:03 CDT)
  • Axel Kohlmeyer (Tue Jul 14 2009 - 18:00:35 CDT)
  • Dan Lussier (Tue Jul 14 2009 - 17:31:57 CDT)
  • Axel Kohlmeyer (Mon Jul 13 2009 - 14:21:03 CDT)
  • Dan Lussier (Mon Jul 13 2009 - 13:44:23 CDT)
• Getting PSF in right format from .gro file
  • Donovan B.T. (Wed May 16 2012 - 08:54:59 CDT)
• getting python to work
  • John Stone (Thu Jul 01 2010 - 10:23:41 CDT)
  • Seth Burleigh (Tue Jun 29 2010 - 11:20:09 CDT)
• getting ramachandran plots with VMD
  • Jérôme Hénin (Mon Oct 27 2003 - 15:47:06 CST)
  • John Stone (Mon Oct 27 2003 - 15:50:51 CST)
  • Madhuri Agashe (Mon Oct 27 2003 - 12:26:36 CST)
• Getting started with VMD/freeVR
  • John Stone (Wed Sep 15 2004 - 13:20:03 CDT)
  • plbrown_at_cs.duke.edu (Wed Sep 15 2004 - 08:14:08 CDT)
• Getting the internal coordinates table
  • Ajasja LjubetiÄ� (Tue Jun 19 2012 - 04:06:50 CDT)
  • Mayne, Christopher G (Mon Jun 18 2012 - 22:07:28 CDT)
  • JC Gumbart (Mon Jun 18 2012 - 17:05:56 CDT)
  • Ajasja LjubetiÄ� (Mon Jun 18 2012 - 04:11:03 CDT)
• Getting the topology,PSF files
  • Adupa Vasista (Sun Jul 07 2019 - 08:38:25 CDT)
  • Adupa Vasista (Fri Jul 05 2019 - 08:23:33 CDT)
  • Peter Freddolino (Fri Jul 05 2019 - 08:02:29 CDT)
  • Peter Freddolino (Thu Jul 04 2019 - 17:09:41 CDT)
  • Adupa Vasista (Thu Jul 04 2019 - 14:54:25 CDT)
• Getting trajectories from DCD files?
  • Joshua Adelman (Sun Sep 23 2012 - 19:01:42 CDT)
  • Maria Antonieta Sanchez Farran (Sun Sep 23 2012 - 15:04:58 CDT)
  • Venkata Mandala (Sun Sep 23 2012 - 13:48:30 CDT)
• Getting trajectories from DCD files?. .
  • Martin, Erik W (Sun Sep 23 2012 - 18:18:10 CDT)
• getting VMD to obey me
  • Francesco Pietra (Mon Jul 06 2020 - 04:39:22 CDT)
  • Josh Vermaas (Sun Jul 05 2020 - 15:33:12 CDT)
  • Francesco Pietra (Sun Jul 05 2020 - 10:38:46 CDT)
• Getting VMD to talk to VRPN on Windows 7
  • Sean Seyler (Wed Jul 29 2015 - 18:23:35 CDT)
  • John Stone (Fri Jun 19 2015 - 08:45:38 CDT)
  • Sean Seyler (Thu Jun 18 2015 - 16:48:48 CDT)
• Getting volumetric map from old Insight file into VMD-readable format
  • Tristan Croll (Sun Dec 09 2012 - 22:36:44 CST)
• giant spike in rmsd curve
  • Peter Freddolino (Mon Nov 13 2006 - 15:37:46 CST)
  • Nels Thorsteinson (Mon Nov 13 2006 - 13:36:14 CST)
• GL window offset problem
  • John Stone (Thu Feb 15 2007 - 13:05:37 CST)
  • christopher (Mon Feb 12 2007 - 15:09:55 CST)
• Global Command to load 200 pdb files, without using script files
  • John Stone (Fri Jun 02 2006 - 11:52:30 CDT)
  • Luis Gracia (Fri Jun 02 2006 - 11:35:53 CDT)
  • Robert Selwyne (Fri Jun 02 2006 - 08:47:35 CDT)
• GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762)
  • John Stone (Mon Jun 26 2006 - 11:22:48 CDT)
  • Hans Martin Senn (Mon Jun 26 2006 - 10:32:49 CDT)
  • Axel Kohlmeyer (Mon Jun 26 2006 - 06:28:22 CDT)
  • Hans Martin Senn (Mon Jun 26 2006 - 03:01:03 CDT)
• GLSL error
  • Dow Hurst DPHURST (Tue Jan 30 2007 - 11:08:22 CST)
  • John Stone (Mon Jan 29 2007 - 15:22:50 CST)
  • Dow Hurst DPHURST (Mon Jan 29 2007 - 14:40:14 CST)
• GLSL failure in VMD 1.8.5, Nvidia 6200 card
  • Guo Zhi (Mon Aug 28 2006 - 21:02:46 CDT)
  • John Stone (Mon Aug 28 2006 - 11:37:48 CDT)
  • Guo Zhi (Mon Aug 28 2006 - 08:57:39 CDT)
• GLSL lost
  • Ignacio Fernández Galván (Tue Mar 18 2008 - 04:59:41 CDT)
  • Axel Kohlmeyer (Mon Mar 17 2008 - 13:59:35 CDT)
  • Ignacio Fernández Galván (Mon Mar 17 2008 - 12:17:21 CDT)
• GLSL or Clip plane
  • John Stone (Mon Apr 04 2005 - 10:23:44 CDT)
  • Jerry Ebalunode (Sat Apr 02 2005 - 17:44:02 CST)
• GLSL rendering in VMD 1.8.6
  • John Stone (Tue Apr 17 2007 - 14:43:58 CDT)
  • Luis Rosales (Mon Apr 16 2007 - 17:40:35 CDT)
  • John Stone (Fri Apr 13 2007 - 22:09:35 CDT)
  • Luis Rosales (Fri Apr 13 2007 - 20:18:23 CDT)
• GLSL rendering mode is NOT available
  • John Stone (Mon Sep 10 2007 - 10:32:37 CDT)
  • Axel Kohlmeyer (Mon Sep 10 2007 - 09:28:37 CDT)
  • Roland Schmucki (Mon Sep 10 2007 - 07:04:48 CDT)
• GLSL rendering problems
  • John Stone (Thu Apr 05 2007 - 15:34:03 CDT)
  • Nichols A. Romero (Thu Apr 05 2007 - 15:07:14 CDT)
  • John Stone (Thu Apr 05 2007 - 14:55:13 CDT)
  • Nichols A. Romero (Thu Apr 05 2007 - 14:41:22 CDT)
• GLSL rendering problems (??)
  • Axel Kohlmeyer (Mon May 14 2007 - 13:03:49 CDT)
  • John Stone (Mon May 14 2007 - 12:42:08 CDT)
  • Axel Kohlmeyer (Mon May 14 2007 - 11:04:34 CDT)
  • Dow Hurst DPHURST (Mon May 14 2007 - 10:39:14 CDT)
  • John Stone (Wed Apr 25 2007 - 09:53:54 CDT)
  • Mario Valle (Tue Apr 24 2007 - 22:44:29 CDT)
  • John Stone (Tue Apr 24 2007 - 16:19:59 CDT)
  • Nichols A. Romero (Tue Apr 24 2007 - 16:00:20 CDT)
  • John Stone (Tue Apr 24 2007 - 15:52:30 CDT)
  • Nichols A. Romero (Tue Apr 24 2007 - 15:40:57 CDT)
• GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card)
  • Vani Vemparala (Sat Oct 12 2013 - 22:43:02 CDT)
  • John Stone (Fri Oct 11 2013 - 08:11:48 CDT)
  • Vani Vemparala (Fri Oct 11 2013 - 05:24:09 CDT)
  • John Stone (Mon Oct 07 2013 - 12:07:21 CDT)
  • Axel Kohlmeyer (Fri Oct 04 2013 - 00:33:13 CDT)
  • Vani Vemparala (Thu Oct 03 2013 - 23:30:59 CDT)
• GLSL rendermode now OK on Linux with NVidia 8756 driver version
  • Pietro Amodeo (Tue Apr 11 2006 - 13:52:48 CDT)
  • John Stone (Tue Apr 11 2006 - 12:28:43 CDT)
  • Pietro Amodeo (Tue Apr 11 2006 - 12:24:49 CDT)
• GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build
  • John Stone (Thu Mar 10 2011 - 16:38:33 CST)
  • John Stone (Thu Jan 27 2011 - 13:44:16 CST)
  • Joshua A. Anderson (Thu Jan 27 2011 - 06:35:56 CST)
  • Joshua A. Anderson (Wed Jan 26 2011 - 14:17:05 CST)
  • John Stone (Wed Jan 26 2011 - 14:31:53 CST)
• Glu-Lys Isopeptide Bond Parameters?
  • Smith, Harper E. (Thu Oct 08 2020 - 10:04:11 CDT)
  • Aaron Oakley (Wed Oct 07 2020 - 20:13:58 CDT)
  • JC Gumbart (Wed Oct 07 2020 - 19:31:08 CDT)
  • Robin Betz (Wed Oct 07 2020 - 18:26:41 CDT)
  • Axel Kohlmeyer (Wed Oct 07 2020 - 16:08:35 CDT)
  • Smith, Harper E. (Wed Oct 07 2020 - 15:28:52 CDT)
  • Josh Vermaas (Wed Oct 07 2020 - 14:48:53 CDT)
  • Smith, Harper E. (Wed Oct 07 2020 - 13:44:43 CDT)
• GLXBadLargeRequest
  • John Stone (Thu Jul 29 2004 - 18:14:05 CDT)
  • Ryan Golhar (Thu Jul 29 2004 - 14:20:06 CDT)
  • John Stone (Thu Jul 29 2004 - 14:03:00 CDT)
  • Ryan Golhar (Thu Jul 29 2004 - 13:52:35 CDT)
• GLXBadLargeRequest and BadLength messages
  • Roland Schulz (Thu Sep 23 2010 - 23:13:03 CDT)
  • Moulton, Steve (Tue Sep 14 2010 - 11:03:13 CDT)
  • John Stone (Mon Sep 13 2010 - 16:34:33 CDT)
  • Moulton, Steve (Mon Sep 13 2010 - 15:43:32 CDT)
• glycerol
  • AyÅŸe Özlem Aykut (Tue Oct 20 2009 - 03:13:57 CDT)
• glycerol box
  • Peter Freddolino (Thu Jun 28 2007 - 12:00:13 CDT)
  • amit dong (Thu Jun 28 2007 - 11:14:12 CDT)
• Glycoprotein simulation
  • Manas Kohli (Sun Nov 22 2020 - 09:12:01 CST)
  • Krishna Vkm (Sun Nov 22 2020 - 05:55:05 CST)
  • Pratik Narain Srivastava (Sun Nov 22 2020 - 02:04:59 CST)
  • Manas Kohli (Fri Nov 20 2020 - 14:25:18 CST)
• Glycoprotein simulation answer
  • Raman Preet Singh (Sat Nov 21 2020 - 01:09:10 CST)
  • Daniel STERBULEAC (Fri Nov 20 2020 - 23:51:08 CST)
• Glycosphingolipids structure
  • Nathan Kern (Wed Aug 18 2021 - 09:39:58 CDT)
  • Ropon-Palacios G. (Tue Aug 17 2021 - 15:42:38 CDT)
• gmake invalid option --c install
  • Axel Kohlmeyer (Sat Aug 11 2007 - 13:46:01 CDT)
  • Axel Kohlmeyer (Sat Aug 11 2007 - 11:38:48 CDT)
  • AustinSmall_at_comcast.net (Sat Aug 11 2007 - 12:52:32 CDT)
  • AustinSmall_at_comcast.net (Sat Aug 11 2007 - 10:47:45 CDT)
• GNU-Darwin rides Tiger, packages back on-line
  • proclus_at_gnu-darwin.org (Fri May 06 2005 - 11:05:55 CDT)
• GnuPlot works!
  • Joe Huang (Mon Apr 22 2002 - 18:10:45 CDT)
  • John Stone (Mon Apr 22 2002 - 17:09:31 CDT)
• gofr
  • Axel Kohlmeyer (Wed Oct 11 2006 - 14:46:15 CDT)
  • Arturas Ziemys (Wed Oct 11 2006 - 13:22:54 CDT)
• gofr between center of mass of a functional group and solvent
  • Axel Kohlmeyer (Tue Mar 19 2013 - 02:17:00 CDT)
  • Yi Wang, PhD (Tue Mar 19 2013 - 01:37:54 CDT)
  • AnkiReddy katha (Tue Mar 19 2013 - 00:52:52 CDT)
• gofr CUDA in script
  • Salvador H-V (Fri Aug 09 2013 - 22:59:27 CDT)
  • Josh Vermaas (Fri Aug 09 2013 - 19:38:37 CDT)
  • Martin, Erik W (Fri Aug 09 2013 - 17:12:07 CDT)
• gofr limit, Kirkwood-Buff integrals
  • Ivan Vyalov (Sat Apr 21 2012 - 14:13:37 CDT)
  • Axel Kohlmeyer (Fri Apr 20 2012 - 17:50:26 CDT)
  • Ivan Vyalov (Fri Apr 20 2012 - 14:49:21 CDT)
  • Axel Kohlmeyer (Fri Apr 20 2012 - 14:11:28 CDT)
  • Ivan Vyalov (Fri Apr 20 2012 - 05:43:18 CDT)
• gofr not full PBC length
  • Axel Kohlmeyer (Wed Sep 17 2014 - 22:47:25 CDT)
  • Casey Johnson (Wed Sep 17 2014 - 18:45:23 CDT)
• gofr with PBC
  • Axel Kohlmeyer (Fri Mar 01 2013 - 09:34:00 CST)
  • Khanal Rabi (Thu Feb 28 2013 - 19:19:06 CST)
• gofr with periodic boundary condition in vasp trajectory
  • Khanal Rabi (Sun Feb 24 2013 - 19:08:17 CST)
• GolP-CHARMM
  • Mikhail Suyetin (Wed Feb 27 2019 - 10:24:21 CST)
• Gone until July 6th.
  • John Stone (Wed Jun 30 2004 - 15:59:08 CDT)
• gopython
  • John Stone (Sat Sep 24 2005 - 22:36:07 CDT)
  • John Stone (Sat Sep 24 2005 - 00:00:33 CDT)
  • tcickovs_at_nd.edu (Fri Sep 23 2005 - 10:36:36 CDT)
• gopython with python3
  • Robin Betz (Thu Nov 22 2018 - 20:33:50 CST)
  • Giacomo Fiorin (Thu Nov 22 2018 - 19:45:55 CST)
  • Giacomo Fiorin (Thu Nov 22 2018 - 19:25:45 CST)
  • Guilherme da Silva (Thu Nov 22 2018 - 11:53:11 CST)
• GPCR-Membrane Issue
  • Akshay Patny (Wed Sep 20 2006 - 12:29:49 CDT)
• GPGPU Programming summer school at University of Tennessee, Aug 10-14.
  • Axel Kohlmeyer (Mon Jun 29 2009 - 14:44:15 CDT)
• GPL compatible PluginMgr/vmddlopen
  • Roland Schulz (Wed Jul 08 2009 - 09:56:08 CDT)
  • John Stone (Mon Jul 06 2009 - 21:45:27 CDT)
  • Roland Schulz (Mon Jul 06 2009 - 04:19:52 CDT)
  • John Stone (Sun Jul 05 2009 - 20:14:35 CDT)
  • Roland Schulz (Sat Jul 04 2009 - 08:13:37 CDT)
• GPU accelerated MD
  • Nikhil Maroli (Fri Oct 23 2015 - 04:12:24 CDT)
• GPU acceleration
  • John Stone (Thu Jan 03 2013 - 09:57:05 CST)
  • Martin, Erik W (Thu Jan 03 2013 - 08:20:27 CST)
• GPU acceleration on tachyon rendering
  • John Stone (Tue Jul 05 2016 - 23:55:33 CDT)
  • Kevin C Chan (Tue Jul 05 2016 - 00:30:29 CDT)
  • John Stone (Thu Jun 30 2016 - 14:57:24 CDT)
  • Kevin C Chan (Thu Jun 30 2016 - 09:16:51 CDT)
  • Kevin C Chan (Wed Jun 29 2016 - 22:26:58 CDT)
  • Kevin C Chan (Wed Jun 29 2016 - 22:23:03 CDT)
  • John Stone (Wed Jun 29 2016 - 09:29:57 CDT)
  • Kevin C Chan (Wed Jun 29 2016 - 09:14:01 CDT)
  • Fernando Vallejos-Burgos (Tue Jun 28 2016 - 23:16:54 CDT)
  • Kevin C Chan (Tue Jun 28 2016 - 22:14:39 CDT)
  • John Stone (Tue Jun 28 2016 - 11:34:40 CDT)
  • Ajasja LjubetiÄ� (Fri Jun 24 2016 - 06:52:47 CDT)
  • Kevin C Chan (Fri Jun 24 2016 - 05:05:16 CDT)
• GPU choice for large systems
  • John Stone (Fri Nov 11 2011 - 12:41:03 CST)
  • Thomas Bishop (Wed Oct 05 2011 - 14:28:45 CDT)
  • John Stone (Sun Oct 02 2011 - 23:02:20 CDT)
  • Axel Kohlmeyer (Sun Oct 02 2011 - 14:34:39 CDT)
  • John Stone (Sat Oct 01 2011 - 21:26:37 CDT)
  • John Stone (Sat Oct 01 2011 - 21:20:18 CDT)
  • Axel Kohlmeyer (Sat Oct 01 2011 - 08:53:36 CDT)
  • Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
  • Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
  • Dmitry Osolodkin (Sat Oct 01 2011 - 06:39:16 CDT)
• GPU conf file
  • John Stone (Mon Nov 28 2016 - 00:21:34 CST)
  • Naeem Mahmood Ashraf (Sun Nov 20 2016 - 02:18:43 CST)
• GPU Programming workshop @ ICTP: deadline extended for participants not requiring visa and financial support
  • Axel Kohlmeyer (Tue Mar 24 2015 - 14:17:22 CDT)
• GPU rendering of molecular orbitals
  • John Stone (Tue Nov 22 2016 - 17:27:12 CST)
  • Matt Watkins (Tue Nov 22 2016 - 16:31:28 CST)
  • John Stone (Tue Nov 22 2016 - 16:01:27 CST)
  • Matt Watkins (Tue Nov 22 2016 - 15:03:38 CST)
• GPU test machine
  • Michael Di Domenico (Fri Mar 21 2008 - 14:46:37 CDT)
  • John Stone (Thu Mar 20 2008 - 19:29:58 CDT)
  • Michael Di Domenico (Thu Mar 20 2008 - 18:42:50 CDT)
  • John Stone (Thu Mar 20 2008 - 15:34:52 CDT)
  • Michael Di Domenico (Thu Mar 20 2008 - 15:29:41 CDT)
  • John Stone (Thu Mar 20 2008 - 11:25:09 CDT)
  • Michael Di Domenico (Thu Mar 20 2008 - 11:04:59 CDT)
• GPU-accelerated ionization
  • John Stone (Wed Apr 09 2014 - 11:31:41 CDT)
  • Tristan Croll (Thu Apr 03 2014 - 20:05:50 CDT)
• GPU-accelerated MSD calculation
  • René Hafner TUK (Fri Jun 10 2022 - 01:47:58 CDT)
  • Max Win (Thu Jun 09 2022 - 12:20:20 CDT)
• GPU-accelerated RDF Calculation
  • Josh Vermaas (Thu Mar 31 2022 - 19:12:38 CDT)
  • Axel Kohlmeyer (Thu Mar 31 2022 - 18:10:50 CDT)
  • Max Win (Thu Mar 31 2022 - 16:52:56 CDT)
• Grab tool: picking problems
  • John Stone (Tue Jan 09 2007 - 14:25:54 CST)
  • Martijn Kragtwijk (Tue Jan 09 2007 - 09:55:52 CST)
• Gradient Background
  • John Stone (Fri Jun 18 2010 - 15:11:05 CDT)
  • Vikas Varshney (Mon Jun 14 2010 - 15:13:26 CDT)
• gradient background not rendered
  • John Stone (Fri Feb 19 2010 - 16:58:46 CST)
  • BIN ZHANG (Fri Feb 19 2010 - 16:50:59 CST)
• graph button on label form
  • John Stone (Mon Mar 18 2002 - 15:23:35 CST)
  • Yufang Wang (Sun Mar 17 2002 - 15:03:41 CST)
• Graphene
  • Bashir Fotouhi (Sat Jul 12 2014 - 04:55:12 CDT)
• Graphic card
  • Axel Kohlmeyer (Wed Oct 17 2012 - 09:34:06 CDT)
  • Han Hu (Wed Oct 17 2012 - 08:27:40 CDT)
• graphic representation
  • John Stone (Wed Apr 05 2006 - 15:30:37 CDT)
  • ivana adamovic (Wed Apr 05 2006 - 15:26:53 CDT)
  • John Stone (Wed Apr 05 2006 - 15:14:26 CDT)
  • ivana adamovic (Wed Apr 05 2006 - 15:06:18 CDT)
  • John Stone (Wed Apr 05 2006 - 13:33:31 CDT)
  • John Stone (Wed Apr 05 2006 - 12:29:09 CDT)
  • ivana adamovic (Wed Apr 05 2006 - 12:24:48 CDT)
• graphic update
  • John Stone (Tue Mar 20 2007 - 22:33:34 CDT)
  • Myunggi Yi (Tue Mar 20 2007 - 22:08:32 CDT)
  • Myunggi Yi (Tue Mar 20 2007 - 20:43:59 CDT)
  • John Stone (Tue Mar 20 2007 - 20:40:09 CDT)
  • Myunggi Yi (Tue Mar 20 2007 - 20:09:06 CDT)
• Graphic window does not refresh
  • John Stone (Mon Dec 22 2014 - 20:04:22 CST)
  • Alessandro Mariani (Mon Dec 22 2014 - 19:58:34 CST)
  • Alessandro Mariani (Mon Dec 22 2014 - 20:04:41 CST)
  • John Stone (Mon Dec 22 2014 - 20:03:35 CST)
  • Alessandro Mariani (Sun Dec 21 2014 - 15:28:47 CST)
  • John Stone (Sun Dec 21 2014 - 13:29:21 CST)
  • Alessandro Mariani (Sun Dec 21 2014 - 13:19:41 CST)
• graphical representation
  • John Stone (Mon Nov 07 2011 - 13:29:43 CST)
  • kirtana S (Tue Nov 01 2011 - 12:21:29 CDT)
  • Goutham (Sun Mar 29 2009 - 15:01:50 CDT)
  • Eric H. Lee (Sun Mar 29 2009 - 14:22:18 CDT)
  • Francesco Pietra (Sun Mar 29 2009 - 13:59:15 CDT)
• Graphical Representations doesn't recognize chain ID z
  • John Stone (Wed Dec 16 2009 - 10:21:12 CST)
  • Samuel Coulbourn Flores (Wed Dec 16 2009 - 09:59:47 CST)
• graphical representations over a number of molecule files
  • Stephen Cox (Mon Mar 07 2011 - 13:28:41 CST)
  • Stephen Cox (Mon Feb 07 2011 - 04:00:48 CST)
  • Axel Kohlmeyer (Sun Feb 06 2011 - 15:43:12 CST)
  • Stephen Cox (Sun Feb 06 2011 - 14:38:30 CST)
• Graphics algorithm
  • Vieri Di Paola (Wed Mar 01 2000 - 03:59:15 CST)
• Graphics algorithm (fwd)
  • Vieri Di Paola (Wed Mar 01 2000 - 10:41:41 CST)
  • John Stone (Wed Mar 01 2000 - 09:30:42 CST)
  • Vieri Di Paola (Wed Mar 01 2000 - 04:30:58 CST)
• Graphics algorithm II (fwd)
  • Vieri Di Paola (Wed Mar 01 2000 - 11:03:48 CST)
• graphics card
  • John Stone (Tue Nov 08 2005 - 09:56:57 CST)
  • William Sheffler (Tue Nov 08 2005 - 00:17:18 CST)
  • Benjamin Goldsteen (Sun Nov 30 2003 - 19:02:23 CST)
  • Jérôme Hénin (Sun Nov 30 2003 - 11:18:29 CST)
  • Nguyen Hoang Phuong (Sun Nov 30 2003 - 09:41:16 CST)
• Graphics card & Accelerator
  • Stéphane Teletchéa (Fri Apr 19 2002 - 06:15:18 CDT)
  • Sanjeev B.S. (Fri Apr 19 2002 - 02:58:22 CDT)
• Graphics card for molecular graphics
  • Edelmiro Moman (Thu Feb 11 2010 - 06:03:47 CST)
  • Axel Kohlmeyer (Sun Jan 24 2010 - 13:09:26 CST)
  • John Stone (Sun Jan 24 2010 - 13:01:36 CST)
  • Edelmiro Moman (Sun Jan 24 2010 - 10:57:42 CST)
• Graphics card for VMD
  • Berit Hinnemann (Wed Dec 16 2009 - 07:16:14 CST)
  • Axel Kohlmeyer (Tue Dec 15 2009 - 12:26:08 CST)
  • Berit Hinnemann (Tue Dec 15 2009 - 11:25:25 CST)
• Graphics card for VMD, number of atoms, file format
  • John Stone (Tue Nov 09 2010 - 11:16:54 CST)
  • Axel Kohlmeyer (Tue Nov 09 2010 - 10:51:32 CST)
  • Prskalo, Alen-Pilip (Tue Nov 09 2010 - 10:43:08 CST)
  • Andrew (Mon Nov 08 2010 - 14:29:07 CST)
  • Axel Kohlmeyer (Mon Nov 08 2010 - 12:38:46 CST)
  • Prskalo, Alen-Pilip (Mon Nov 08 2010 - 11:38:22 CST)
• Graphics card requirement for VMD
  • Debostuti Ghoshdastidar (Tue Mar 13 2018 - 09:55:26 CDT)
  • John Stone (Tue Mar 13 2018 - 09:36:16 CDT)
  • Abhishek TYAGI (Tue Mar 13 2018 - 07:13:06 CDT)
  • Debostuti Ghoshdastidar (Tue Mar 13 2018 - 07:05:32 CDT)
• Graphics card suitable for VMD
  • Gianluca Interlandi (Fri Oct 31 2014 - 15:59:46 CDT)
  • John Stone (Fri Oct 31 2014 - 14:45:04 CDT)
  • Josh Vermaas (Fri Oct 31 2014 - 13:35:02 CDT)
  • Dudo (Fri Oct 31 2014 - 10:38:30 CDT)
  • Afroditi Maria Zaki (Fri Oct 31 2014 - 09:46:10 CDT)
• Graphics cards
  • John Stone (Mon Sep 11 2006 - 11:34:32 CDT)
  • David Chalmers (Sun Sep 10 2006 - 23:11:58 CDT)
  • John Stone (Tue May 20 2003 - 10:55:24 CDT)
  • Dallas Warren (Mon May 19 2003 - 17:06:30 CDT)
  • John Stone (Mon May 19 2003 - 12:27:54 CDT)
  • Dallas Warren (Sun May 18 2003 - 17:55:37 CDT)
• graphics command displays shapes of unusual sizes
  • Axel Kohlmeyer (Wed Sep 17 2014 - 22:49:48 CDT)
  • Lane Votapka (Wed Sep 17 2014 - 17:43:55 CDT)
• graphics display works sometimes
  • John Stone (Tue Dec 16 2003 - 23:07:43 CST)
  • Luis Gracia (Tue Dec 16 2003 - 21:42:44 CST)
• graphics for publication
  • Peter Freddolino (Sat Apr 25 2009 - 07:30:04 CDT)
  • YangMingjun (Sat Apr 25 2009 - 04:30:40 CDT)
  • Axel Kohlmeyer (Fri Apr 24 2009 - 11:26:58 CDT)
  • Peter Freddolino (Fri Apr 24 2009 - 11:06:57 CDT)
  • YangMingjun (Fri Apr 24 2009 - 10:14:23 CDT)
• graphics in VMD and overlay
  • Nuno Sousa Cerqueira (Tue Nov 14 2017 - 12:21:21 CST)
• Graphics Representation - Drawing methods
  • Axel Kohlmeyer (Tue Jul 13 2010 - 18:08:18 CDT)
  • puroorava annapaneni (Tue Jul 13 2010 - 17:39:06 CDT)
• Graphics Requirement for VMD
  • Debostuti Ghoshdastidar (Tue Mar 13 2018 - 06:29:47 CDT)
• Graphics workstation and Xenon problems with VMD?
  • John Stone (Wed Aug 27 2003 - 13:39:17 CDT)
  • Fred Salsbury (Wed Aug 27 2003 - 13:24:11 CDT)
  • Axel Kohlmeyer (Wed Aug 27 2003 - 10:19:44 CDT)
  • Fred Salsbury (Wed Aug 27 2003 - 06:22:05 CDT)
  • John Stone (Wed Aug 27 2003 - 00:26:11 CDT)
  • Fred Salsbury (Tue Aug 26 2003 - 19:49:41 CDT)
• graphics: not enough parameters
  • Axel Kohlmeyer (Sat Jun 15 2013 - 16:39:42 CDT)
  • Chavent Mathieu (Fri Jun 14 2013 - 12:56:24 CDT)
• graphing a dihedral
  • Justin Gullingsrud (Sun May 14 2000 - 17:07:30 CDT)
  • Deepak Singh (Sat May 13 2000 - 20:48:31 CDT)
• Grasp file format for VMD!!
  • John Stone (Mon Jan 24 2005 - 17:26:08 CST)
  • N. Chitra (Mon Jan 24 2005 - 12:22:53 CST)
• GRASP files
  • Justin Gullingsrud (Wed Jun 14 2000 - 14:37:01 CDT)
  • Paul Hubbard (Wed Jun 14 2000 - 11:10:34 CDT)
  • Andrew Hall (Wed Jun 14 2000 - 10:17:27 CDT)
• Grasp output view format!
  • N. Chitra (Mon Jan 24 2005 - 12:28:50 CST)
• GRASP plugin for VMD
  • John Stone (Tue Sep 26 2006 - 12:52:06 CDT)
  • Vineet Pande (Tue Sep 26 2006 - 11:14:31 CDT)
• Grasp plugin...
  • Luis Rosales (Wed Jul 06 2005 - 19:19:25 CDT)
  • John Stone (Wed Jul 06 2005 - 10:14:05 CDT)
  • Luis Rosales (Tue Jul 05 2005 - 20:17:12 CDT)
• GRD file format
  • Justin Gullingsrud (Tue Mar 22 2005 - 11:44:16 CST)
  • Justin Gullingsrud (Tue Mar 22 2005 - 13:24:26 CST)
  • Axel Kohlmeyer (Wed Mar 23 2005 - 01:33:31 CST)
  • Axel Kohlmeyer (Tue Mar 22 2005 - 13:15:35 CST)
  • Keith Refson (Tue Mar 22 2005 - 12:30:46 CST)
  • Keith Refson (Tue Mar 22 2005 - 09:57:02 CST)
• grid
  • John Stone (Mon Jan 30 2006 - 10:15:29 CST)
  • Vlad Cojocaru (Mon Jan 30 2006 - 07:15:56 CST)
  • Pavel Macek (Mon Jan 30 2006 - 06:30:07 CST)
• GRID maps visualization problems
  • John Stone (Wed Nov 25 2009 - 15:05:30 CST)
  • Björn Windshügel (Tue Nov 24 2009 - 12:22:47 CST)
  • John Stone (Tue Nov 24 2009 - 09:12:30 CST)
  • Sergey Samsonov (Tue Nov 24 2009 - 07:50:51 CST)
  • Sergey Samsonov (Tue Nov 24 2009 - 07:35:51 CST)
• grid mode in vmd?
  • John Stone (Thu Jul 05 2018 - 09:07:37 CDT)
  • Murpholino Peligro (Tue Jul 03 2018 - 18:26:11 CDT)
• Grid spacing in mdff
  • Leonardo Trabuco (Tue Jun 15 2010 - 02:54:08 CDT)
• Gromacs analysis tools for Namd output
  • Kei Sit (Wed Feb 01 2012 - 17:33:01 CST)
  • John Stone (Wed Feb 01 2012 - 11:47:43 CST)
  • PAUL NEWMAN (Wed Feb 01 2012 - 11:41:40 CST)
• Gromacs file formats gro, xtc and trr
  • John Stone (Tue Oct 29 2002 - 16:14:37 CST)
  • Marc Baaden (Tue Oct 29 2002 - 15:59:38 CST)
• Gromacs index file
  • Jeremy Lucid (Wed Dec 19 2012 - 06:59:37 CST)
  • poker_at_physics.usyd.edu.au (Wed Dec 19 2012 - 06:04:23 CST)
  • Axel Kohlmeyer (Wed Dec 19 2012 - 03:52:49 CST)
  • Ignacio Fernández Galván (Wed Dec 19 2012 - 03:01:58 CST)
• Gromacs reading: Why scaling??
  • Axel Kohlmeyer (Thu Jul 31 2008 - 19:51:10 CDT)
  • Nicolas (Thu Jul 31 2008 - 19:32:16 CDT)
  • Nicolas Bigaouette (Thu Jul 31 2008 - 19:21:12 CDT)
  • Axel Kohlmeyer (Thu Jul 31 2008 - 19:11:11 CDT)
  • Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
• gromacs to charmm conversion
  • Ajasja LjubetiÄ� (Fri Oct 23 2015 - 03:28:28 CDT)
  • Francesco Pietra (Fri Oct 23 2015 - 02:34:15 CDT)
• Gromacs trajectories in VMD
  • Gitte Iversen (Mon Nov 22 1999 - 01:22:02 CST)
• gromacs trajectory file
  • amin_at_imtech.res.in (Thu May 03 2012 - 02:51:23 CDT)
  • ahmet yýldýrým (Thu May 03 2012 - 01:49:13 CDT)
• gromacs trajectory files
  • Axel Kohlmeyer (Thu Feb 21 2008 - 06:58:52 CST)
  • maria goranovic (Thu Feb 21 2008 - 04:18:17 CST)
• Gromacs XTC reader broken in 1.8beta version
  • John Stone (Thu Aug 08 2002 - 12:46:19 CDT)
  • Marc Baaden (Thu Aug 08 2002 - 10:34:56 CDT)
• gromos96 files
  • John Stone (Thu Mar 11 2004 - 14:35:03 CST)
  • Franca Fraternali (Thu Mar 11 2004 - 03:47:43 CST)
  • John Stone (Wed Mar 10 2004 - 15:56:08 CST)
  • Franca Fraternali (Wed Mar 10 2004 - 04:55:47 CST)
• group selection
  • Justin Gullingsrud (Fri Mar 23 2001 - 09:38:46 CST)
  • Justin Gullingsrud (Thu Mar 22 2001 - 12:32:23 CST)
  • Yunfeng Hu (Mon Mar 19 2001 - 21:33:01 CST)
• GTP and GDP parameter files
  • Anjela Manandhar (Mon Dec 01 2014 - 15:00:59 CST)
  • Tristan Croll (Wed Oct 15 2014 - 17:45:30 CDT)
  • andrea (Wed Oct 15 2014 - 15:38:14 CDT)
  • Josh Vermaas (Wed Oct 15 2014 - 14:04:06 CDT)
  • Anjela Manandhar (Wed Oct 15 2014 - 10:02:23 CDT)
• GTP topology file
  • Peter Freddolino (Fri Mar 20 2009 - 12:03:01 CDT)
  • tiziano gallo cassarino (Fri Mar 20 2009 - 08:54:12 CDT)
• Guessbonds and retype bonds
  • Axel Kohlmeyer (Wed Dec 02 2015 - 15:46:43 CST)
  • John Stone (Wed Dec 02 2015 - 15:19:11 CST)
  • Karteek Kumar (Tue Dec 01 2015 - 23:12:30 CST)
• GUI mod request
  • Jérôme Hénin (Sun Dec 10 2017 - 05:31:52 CST)
  • Dow Hurst (Sat Dec 09 2017 - 10:06:37 CST)
  • Dow Hurst (Sat Dec 09 2017 - 11:10:58 CST)
  • Jérôme Hénin (Sat Dec 09 2017 - 10:57:55 CST)
• gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions
  • Thomas C. Bishop (Mon Nov 19 2007 - 10:27:02 CST)
  • Axel Kohlmeyer (Sat Nov 17 2007 - 00:11:54 CST)
  • Thomas C. Bishop (Fri Nov 16 2007 - 17:12:27 CST)
• gyration radius for a trajectory
  • Axel Kohlmeyer (Fri Aug 25 2006 - 09:40:54 CDT)
  • alexandra.marques_at_fc.up.pt (Fri Aug 25 2006 - 05:38:06 CDT)
• gziped files
  • Brian Bennion (Tue Mar 09 2004 - 13:38:44 CST)
  • Zampighi, Lorenzo (Tue Mar 09 2004 - 13:08:17 CST)
  • Brian Bennion (Tue Mar 09 2004 - 13:29:03 CST)
  • Brian Bennion (Tue Mar 09 2004 - 11:08:55 CST)
  • Axel Kohlmeyer (Tue Mar 09 2004 - 06:19:39 CST)
  • John Stone (Mon Mar 08 2004 - 14:33:41 CST)
  • Diss Romain (Mon Mar 08 2004 - 10:00:49 CST)
• H Bond Plug-in Questions
  • JC Gumbart (Thu Sep 29 2011 - 12:46:25 CDT)
  • Alex Hahn (Thu Sep 29 2011 - 11:53:13 CDT)
• H- bond
  • emra Heshmati (Wed Oct 17 2007 - 12:16:47 CDT)
• H-atoms placed at the end in PDB file
  • John Stone (Fri Nov 22 2013 - 23:38:10 CST)
  • Biswa Ranjan Meher (Thu Nov 14 2013 - 17:15:15 CST)
• h-bond
  • soroush ziaei (Sun Dec 23 2018 - 09:51:17 CST)
  • Vermaas, Joshua (Sun Dec 23 2018 - 07:40:26 CST)
  • soroush ziaei (Sat Dec 22 2018 - 17:04:03 CST)
• H-bond analysis
  • Rupashree Shyama Ray (Wed Jun 29 2011 - 09:15:50 CDT)
• H-bond angle
  • Ashar Malik (Thu Jun 08 2017 - 10:58:40 CDT)
  • Shashank Ranjan Srivastava (Thu Jun 08 2017 - 09:52:38 CDT)
• H-Bond display in VMD
  • John Stone (Thu Feb 08 2007 - 12:37:03 CST)
  • Esther Brugger (Tue Feb 06 2007 - 12:41:47 CST)
• H-bond distance measurement
  • Aditya Padhi (Tue Nov 01 2011 - 03:53:57 CDT)
• H-bond energy
  • Peter Freddolino (Fri Jan 19 2007 - 07:51:34 CST)
  • Himanshu Khandelia (Fri Jan 19 2007 - 07:41:54 CST)
  • Peter Freddolino (Thu Jan 18 2007 - 18:23:24 CST)
  • amit dong (Thu Jan 18 2007 - 18:13:11 CST)
• H-Bond in VMD
  • Esther Brugger (Thu Feb 08 2007 - 10:48:38 CST)
• H-bond life time
  • Ignacio Fernández Galván (Wed Sep 15 2010 - 07:24:14 CDT)
  • Nicolas SAPAY (Wed Sep 15 2010 - 07:45:06 CDT)
  • Nicolas SAPAY (Wed Sep 15 2010 - 03:22:09 CDT)
• H-bond occupancy
  • JC Gumbart (Wed May 28 2014 - 06:36:31 CDT)
  • bharat gupta (Wed May 28 2014 - 03:18:16 CDT)
  • Irene Newhouse (Wed Nov 19 2008 - 12:23:58 CST)
• H-bond plotting
  • Liu, Zhanwu (Wed Oct 02 2002 - 09:54:38 CDT)
• h-bond plugin with QMMM
  • John Stone (Thu Dec 03 2020 - 23:14:09 CST)
  • Gumbart, JC (Thu Dec 03 2020 - 19:11:14 CST)
  • John Stone (Thu Dec 03 2020 - 16:10:47 CST)
  • Marcelo C. R. Melo (Thu Dec 03 2020 - 15:52:18 CST)
  • Francesco Pietra (Thu Dec 03 2020 - 13:44:20 CST)
  • Rafael Bernardi (Thu Dec 03 2020 - 10:44:37 CST)
  • Rafael Bernardi (Wed Dec 02 2020 - 12:48:28 CST)
  • Francesco Pietra (Wed Dec 02 2020 - 03:56:05 CST)
• h-bond water molecules
  • Adriano Santana Sanchez (Sat Aug 18 2018 - 08:54:38 CDT)
• H-bonds
  • Christoph Schneider (Mon Oct 06 1997 - 12:02:13 CDT)
  • Peter Freddolino (Thu Apr 02 2009 - 09:27:02 CDT)
  • Bernhard Knapp (Thu Apr 02 2009 - 06:27:25 CDT)
  • Axel Kohlmeyer (Tue Apr 24 2007 - 11:28:31 CDT)
  • amit dong (Tue Apr 24 2007 - 10:58:13 CDT)
  • John Stone (Tue Dec 06 2005 - 16:34:22 CST)
  • Paul D. Jones (Tue Dec 06 2005 - 15:18:31 CST)
• H-Bonds not shown when loading by topo readlammpsdata
  • M K (Sun Dec 07 2014 - 22:34:02 CST)
  • John Stone (Sun Dec 07 2014 - 22:08:43 CST)
  • M K (Sun Dec 07 2014 - 21:51:37 CST)
• H-bonds?
  • Andrew Dalke (Wed Mar 05 1997 - 09:37:55 CST)
  • Andrea Bernini (Wed Mar 05 1997 - 06:36:47 CST)
• H-H bond in solvate
  • Jorge Pikunic (Wed Jul 27 2005 - 14:25:09 CDT)
• H-H dynamic bonds
  • Axel Kohlmeyer (Tue Jul 17 2012 - 11:22:07 CDT)
  • DESPIAU-PUJO Emilie UJF (Tue Jul 17 2012 - 09:58:31 CDT)
  • Axel Kohlmeyer (Mon Apr 23 2012 - 18:10:58 CDT)
  • Q=A3ukasz_Pi=EAko=B6=22?= (Mon Apr 23 2012 - 17:21:42 CDT)
• H.bond - VMD
  • Axel Kohlmeyer (Fri Jun 05 2015 - 08:29:59 CDT)
  • Axel Kohlmeyer (Fri Jun 05 2015 - 02:04:34 CDT)
  • SaeeD PourasaD (Fri Jun 05 2015 - 01:04:40 CDT)
• H2 bond distances calculation n displaying image
  • Axel Kohlmeyer (Fri Mar 07 2008 - 10:16:05 CST)
  • SENTHIL KUMAR (Thu Mar 06 2008 - 22:07:18 CST)
• H_Bonds
  • Axel Kohlmeyer (Mon Sep 28 2009 - 14:16:12 CDT)
  • Katherine Parra (Mon Sep 28 2009 - 12:53:21 CDT)
• Half of a dimer out of the box in a simulation
  • Luis Agullo (Fri Sep 12 2014 - 12:29:04 CDT)
  • Josh Vermaas (Wed Sep 10 2014 - 15:44:26 CDT)
  • Luis Agullo (Wed Sep 10 2014 - 14:49:13 CDT)
• Handful of rendering issues
  • John Stone (Fri Apr 10 2015 - 01:51:22 CDT)
  • Norman Geist (Mon Feb 16 2015 - 02:23:37 CST)
  • John Stone (Fri Feb 13 2015 - 09:42:02 CST)
  • Norman Geist (Fri Feb 13 2015 - 09:25:36 CST)
  • John Stone (Fri Feb 13 2015 - 08:54:37 CST)
  • Norman Geist (Fri Feb 13 2015 - 01:42:15 CST)
  • John Stone (Thu Feb 12 2015 - 09:15:59 CST)
  • Norman Geist (Thu Feb 12 2015 - 02:44:34 CST)
  • Tristan Croll (Wed Feb 11 2015 - 15:28:20 CST)
  • Maxim Belkin (Wed Feb 11 2015 - 15:16:16 CST)
  • Tristan Croll (Wed Feb 11 2015 - 15:07:43 CST)
  • John Stone (Wed Feb 11 2015 - 10:21:09 CST)
  • John Stone (Wed Feb 11 2015 - 10:12:44 CST)
  • Maxim Belkin (Wed Feb 11 2015 - 09:52:15 CST)
  • Norman Geist (Wed Feb 11 2015 - 09:32:35 CST)
  • Tristan Croll (Wed Feb 11 2015 - 05:15:19 CST)
• handling electron density maps (.mrc and .map files)
  • hinsen_at_dsm-mail.saclay.cea.fr (Sun Dec 19 2004 - 03:04:09 CST)
  • Jim Nettles (Sat Dec 18 2004 - 18:20:39 CST)
  • Amarda Shehu (Sat Dec 18 2004 - 15:29:30 CST)
• Hands-On Workshop on Computational Biophysics: April 17-21 in Urbana, IL
  • João Ribeiro KS (Fri Feb 24 2017 - 09:12:05 CST)
  • João Ribeiro KS (Fri Feb 17 2017 - 16:57:08 CST)
• Hands-On Workshop on Computational Biophysics: May 30 - June 2 in Pittsburgh, PA
  • João Ribeiro KS (Wed Mar 22 2017 - 10:15:41 CDT)
• Hands-On Workshop on Computational Biophysics: November 14-18 in Atlanta, GA
  • Jodi Ann Hadden (Thu Sep 29 2016 - 00:27:46 CDT)
• Hands-On Workshop on Computational Biophysics: October 17-21 in Urbana, IL
  • Jodi Ann Hadden (Fri Sep 16 2016 - 15:35:45 CDT)
• Hands-On Workshop on Integrative Modeling and Simulations
  • Jodi Ann Hadden (Wed Nov 16 2016 - 11:28:03 CST)
• Haptic devices for IMD
  • gpat_at_bioacademy.gr (Fri Jan 20 2012 - 05:01:35 CST)
  • Marc Baaden (Wed Jan 18 2012 - 12:27:55 CST)
  • Axel Kohlmeyer (Wed Jan 18 2012 - 11:24:19 CST)
  • John Stone (Wed Jan 18 2012 - 10:57:05 CST)
  • gpat_at_bioacademy.gr (Wed Jan 18 2012 - 09:56:21 CST)
• haptic devices VMD/NAMD/IMD
  • Marc Baaden (Mon Oct 31 2011 - 17:56:30 CDT)
  • Axel Kohlmeyer (Mon Oct 31 2011 - 16:55:56 CDT)
  • John Stone (Mon Oct 31 2011 - 16:04:46 CDT)
  • Thomas Bishop (Mon Oct 31 2011 - 15:52:48 CDT)
• Haptic interface options
  • Tristan Croll (Sun Oct 12 2014 - 18:03:46 CDT)
  • John Stone (Fri Oct 10 2014 - 09:59:21 CDT)
  • Tristan Croll (Tue Oct 07 2014 - 17:03:22 CDT)
  • John Stone (Tue Oct 07 2014 - 14:53:41 CDT)
  • Tristan Croll (Tue Oct 07 2014 - 14:23:17 CDT)
  • Axel Kohlmeyer (Tue Oct 07 2014 - 12:00:37 CDT)
  • Tristan Croll (Mon Oct 06 2014 - 20:00:28 CDT)
• haptic interfaces
  • John Stone (Thu Jun 06 2002 - 00:24:19 CDT)
  • Will Sheffler (Thu Jun 06 2002 - 00:11:34 CDT)
• haptic interfaces && namd on clusters
  • John Stone (Thu Jun 06 2002 - 01:41:32 CDT)
  • Will Sheffler (Thu Jun 06 2002 - 01:27:25 CDT)
• haptic/force feedback devices and 3D viz
  • Thomas C Bishop (Wed Apr 10 2019 - 14:52:26 CDT)
• haptics device "novint falcon"
  • John Stone (Mon Dec 15 2008 - 09:26:40 CST)
  • angel_at_cbuc.cl (Mon Dec 15 2008 - 09:13:31 CST)
• hard ware stereo
  • Dr. Daniel James White PhD (Mon Jan 27 2003 - 04:14:09 CST)
  • MJR (Sun Jan 26 2003 - 21:14:35 CST)
  • Y. U. Sasidhar (Sun Jan 26 2003 - 08:48:18 CST)
• Hardware for NAMD / VMD machine
  • Axel Kohlmeyer (Mon Jul 06 2009 - 16:46:40 CDT)
  • Olve Peersen (Mon Jul 06 2009 - 13:39:53 CDT)
  • John Stone (Mon Jul 06 2009 - 11:04:30 CDT)
  • Olve Peersen (Fri Jul 03 2009 - 01:26:11 CDT)
• hardware stereo with nVidia card
  • Mads Nørregaard-Madsen (Thu Sep 04 2003 - 02:26:56 CDT)
  • John Stone (Wed Sep 03 2003 - 22:44:38 CDT)
• harmonic constraint when equilibrate the system
  • Naiyin Yu (Wed Jan 13 2010 - 21:44:03 CST)
• Has anyone done ILS successfully?
  • Irene Newhouse (Wed Jun 02 2010 - 14:39:36 CDT)
• Has anyone successfully executed ORCA instead of Gaussian for ffTK?
  • Joel Subach (Sun Jun 25 2023 - 06:28:49 CDT)
• having problem with disulfide bond
  • John Stone (Tue Jan 09 2018 - 11:25:28 CST)
  • Shahee Islam (Tue Jan 09 2018 - 01:21:24 CST)
  • Souvik Sinha (Tue Jan 09 2018 - 02:05:47 CST)
  • Ashar Malik (Tue Jan 09 2018 - 00:48:54 CST)
  • Shahee Islam (Tue Jan 09 2018 - 00:04:01 CST)
• Having problem with geometrical structure
  • parinaz bashirbanaem (Sun Jan 28 2018 - 04:16:44 CST)
• hbond
  • Subrata Paul (Sat Jun 09 2012 - 06:27:34 CDT)
  • John Stone (Fri Mar 23 2007 - 14:08:04 CDT)
  • jacopo.sgrignani_at_unifi.it (Fri Mar 23 2007 - 13:29:57 CDT)
  • Anuradha Mittal (Mon Apr 11 2005 - 12:24:05 CDT)
• Hbond analysis
  • George Tzotzos (Tue Dec 20 2011 - 13:46:38 CST)
  • Jernej Zidar (Fri Oct 14 2011 - 08:19:22 CDT)
  • sajad falsafi (Fri Oct 14 2011 - 08:06:08 CDT)
  • subrata paul (Fri Oct 14 2011 - 04:11:46 CDT)
  • John Stone (Sat Mar 24 2007 - 11:13:25 CDT)
  • jacopo.sgrignani_at_unifi.it (Sat Mar 24 2007 - 11:03:24 CDT)
• hbond calculation
  • Peter Freddolino (Mon Mar 26 2007 - 16:00:10 CDT)
  • alexandra.marques_at_fc.up.pt (Mon Mar 26 2007 - 15:49:19 CDT)
• Hbond calculation - periodic atoms
  • Axel Kohlmeyer (Mon Jan 26 2015 - 20:50:46 CST)
  • Bharat Sharma (Mon Jan 26 2015 - 18:59:58 CST)
• hbond calculations
  • Justin Gullingsrud (Tue Aug 29 2000 - 14:18:45 CDT)
  • B. Bennion (Tue Aug 29 2000 - 10:49:16 CDT)
• hBond colvars and patching
  • Francesco Pietra (Sun Mar 06 2011 - 14:05:47 CST)
• hBond component in colvars and patching
  • Francesco Pietra (Sat Mar 05 2011 - 14:38:45 CST)
• Hbond donor-acceptor distances
  • Eduard Schreiner (Wed Oct 04 2006 - 06:15:38 CDT)
  • Vlad Cojocaru (Tue Oct 03 2006 - 14:49:40 CDT)
• Hbond extension
  • Axel Kohlmeyer (Tue Jun 02 2020 - 12:43:54 CDT)
• Hbond in VMD
  • hamid mosaddeghi (Fri Sep 02 2011 - 05:46:16 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 15:56:52 CDT)
  • hamid mosaddeghi (Wed Aug 31 2011 - 14:50:19 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 13:27:21 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 13:16:11 CDT)
  • hamid mosaddeghi (Wed Aug 31 2011 - 12:28:09 CDT)
  • hamid mosaddeghi (Wed Aug 31 2011 - 12:29:01 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 07:45:45 CDT)
  • hamid mosaddeghi (Wed Aug 31 2011 - 03:12:47 CDT)
• Hbond per residue
  • Maxim Belkin (Mon Jan 26 2015 - 07:30:47 CST)
  • Antonija Tomić (Mon Jan 26 2015 - 03:08:07 CST)
  • Maxim Belkin (Sun Jan 25 2015 - 06:24:13 CST)
  • Antonija Tomić (Sun Jan 25 2015 - 03:56:19 CST)
• hbond questions
  • Miguel Ferreira (Mon Apr 16 2007 - 10:10:03 CDT)
• Hbond rendering issue with VMD 1.9
  • John Stone (Fri Mar 18 2011 - 13:09:41 CDT)
  • Nicolas Sapay (Fri Mar 18 2011 - 04:58:27 CDT)
• hbonds
  • Ana Celia Vila Verde (Tue Jul 15 2014 - 06:56:42 CDT)
  • Mary Varughese (Tue Jul 15 2014 - 04:51:50 CDT)
  • John Stone (Thu Oct 02 2003 - 14:55:14 CDT)
  • J. Rui Rodrigues (Wed Oct 01 2003 - 17:16:37 CDT)
• hbonds (how to count)
  • Axel Kohlmeyer (Wed Oct 03 2007 - 06:29:53 CDT)
  • Alessio Alexiadis (Wed Oct 03 2007 - 03:28:52 CDT)
• Hbonds Analysis
  • Aric Newton (Wed Feb 15 2012 - 18:11:58 CST)
  • Axel Kohlmeyer (Wed Feb 15 2012 - 18:14:24 CST)
  • John Stone (Wed Feb 15 2012 - 10:13:18 CST)
  • Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
  • Aric Newton (Tue Feb 14 2012 - 14:22:27 CST)
• Hbonds Analysis.
  • John Stone (Thu Feb 16 2012 - 10:34:58 CST)
  • Aric Newton (Thu Feb 16 2012 - 10:27:38 CST)
• HBONDS bug?
  • Axel Kohlmeyer (Tue Dec 14 2010 - 02:36:38 CST)
  • Nicolas Tilmans (Mon Dec 13 2010 - 15:21:20 CST)
• Hbonds calc with residue not in CHARMm
  • Irene Newhouse (Thu Mar 04 2010 - 12:52:08 CST)
  • Irene Newhouse (Sat Feb 27 2010 - 12:17:07 CST)
  • JC Gumbart (Sat Feb 27 2010 - 12:05:18 CST)
  • JC Gumbart (Sat Feb 27 2010 - 12:19:17 CST)
  • Irene Newhouse (Sat Feb 27 2010 - 11:33:43 CST)
  • JC Gumbart (Fri Feb 26 2010 - 22:34:42 CST)
  • Irene Newhouse (Fri Feb 26 2010 - 14:40:28 CST)
• Hbonds color in VMD
  • Josh Vermaas (Mon Sep 16 2013 - 10:34:05 CDT)
  • Josh Vermaas (Sun Sep 15 2013 - 17:11:27 CDT)
  • Research Jubilant (Fri Sep 13 2013 - 12:38:17 CDT)
• hbonds count
  • Axel Kohlmeyer (Wed Nov 30 2005 - 09:22:16 CST)
  • J. Rui Rodrigues (Wed Nov 30 2005 - 07:28:41 CST)
  • Michel Espinoza-Fonseca (Wed Nov 30 2005 - 06:34:26 CST)
• Hbonds counting script
  • li (Tue Jan 18 2005 - 01:06:58 CST)
• HBonds criterion
  • Peter Freddolino (Wed Sep 27 2006 - 17:20:57 CDT)
  • François-Xavier Coudert (Wed Sep 27 2006 - 03:17:01 CDT)
  • Peter Freddolino (Tue Sep 26 2006 - 16:06:03 CDT)
  • Peter Freddolino (Tue Sep 26 2006 - 16:00:11 CDT)
  • FX Coudert (Tue Sep 26 2006 - 14:38:39 CDT)
  • Peter Freddolino (Tue Sep 26 2006 - 12:24:46 CDT)
  • François-Xavier Coudert (Tue Sep 26 2006 - 11:18:22 CDT)
• Hbonds details every frame
  • Gumbart, JC (Fri Nov 11 2022 - 14:24:10 CST)
  • Nick Bayhi (Thu Nov 10 2022 - 16:57:02 CST)
• hbonds during trajectorywith vmd 1.8beta
  • Vlad Cojocaru (Tue Dec 03 2002 - 04:05:59 CST)
  • Justin Gullingsrud (Mon Dec 02 2002 - 09:15:20 CST)
  • Vlad Cojocaru (Mon Dec 02 2002 - 03:05:44 CST)
• Hbonds for a specific frame
  • hamid mosaddeghi (Wed Aug 31 2011 - 01:23:37 CDT)
  • Hitesh Patel (Tue Aug 30 2011 - 11:47:23 CDT)
• HBonds from Desmond Trajectory
  • JC Gumbart (Tue Sep 24 2013 - 10:35:31 CDT)
• HBonds Plugin - Hbonds criteria
  • #ANG YUN MEI ELISA# (Tue Jan 24 2017 - 18:24:49 CST)
• hbonds problem
  • JC Gumbart (Sat Feb 17 2007 - 19:57:17 CST)
  • alexandra.marques_at_fc.up.pt (Sat Feb 17 2007 - 17:52:45 CST)
• HBonds Representation
  • John Stone (Fri Oct 13 2006 - 15:00:33 CDT)
  • Dallas B. Warren (Tue Oct 10 2006 - 23:04:35 CDT)
• HBonds representation draws bonds with atoms (Hs) not included in the selection
  • Camilo Andrés Jimenez Cruz (Fri Dec 13 2013 - 13:20:07 CST)
  • Camilo Andrés Jimenez Cruz (Fri Dec 13 2013 - 09:35:37 CST)
• hbonds time series
  • John Stone (Thu Mar 03 2005 - 14:28:24 CST)
  • syma khalid (Thu Mar 03 2005 - 09:33:34 CST)
• hbonds vs measure hbonds
  • Sahu, Subin (Thu Apr 28 2016 - 07:15:32 CDT)
  • Sahu, Subin (Wed Apr 27 2016 - 11:05:04 CDT)
• hbonds vs time
  • JC Gumbart (Thu May 31 2012 - 15:09:06 CDT)
  • JC Gumbart (Thu May 31 2012 - 11:04:48 CDT)
  • Subrata Paul (Thu May 31 2012 - 10:40:13 CDT)
• hbonds with noncommon atom names
  • Sadegh Faramarzi Ganjabad (Thu Mar 02 2017 - 15:03:49 CST)
  • John Stone (Thu Mar 02 2017 - 14:37:04 CST)
  • John Stone (Thu Mar 02 2017 - 14:35:17 CST)
  • Sadegh Faramarzi Ganjabad (Tue Feb 28 2017 - 18:34:33 CST)
  • John Stone (Tue Feb 28 2017 - 17:02:52 CST)
  • Sadegh Faramarzi Ganjabad (Thu Feb 23 2017 - 23:52:24 CST)
• hbonds.tcl selection problem in command-line
  • Axel Kohlmeyer (Tue Dec 15 2009 - 06:17:46 CST)
  • Nicola Giacche' (Tue Dec 15 2009 - 05:25:01 CST)
• Head Tracking for Desktop VR Displays using the WiiRemote and VMD
  • John Stone (Tue Feb 26 2013 - 15:25:03 CST)
  • Ajasja LjubetiÄ� (Thu Feb 07 2013 - 15:48:00 CST)
• Head tracking with VRPN and VMD
  • John Stone (Mon May 09 2005 - 10:07:04 CDT)
  • Oliver Wenisch (Mon May 09 2005 - 09:57:43 CDT)
• Headtracking software
  • John Stone (Tue Nov 16 2010 - 15:23:14 CST)
  • Biff Forbush (Tue Nov 16 2010 - 12:37:21 CST)
  • Biff Forbush (Tue Nov 16 2010 - 11:01:00 CST)
  • Axel Kohlmeyer (Tue Nov 16 2010 - 10:48:32 CST)
  • Ajasja LjubetiÄ� (Tue Nov 16 2010 - 09:00:27 CST)
  • Tamás Borsos (Tue Nov 16 2010 - 04:25:04 CST)
• Heat capacity
  • zizi moradi (Sun May 24 2009 - 16:39:45 CDT)
• Heat mapper
  • Barry Isralewitz (Mon Oct 08 2012 - 13:09:39 CDT)
  • John Stone (Mon Oct 08 2012 - 12:57:08 CDT)
  • Esam Tolba (Mon Oct 08 2012 - 05:53:04 CDT)
  • Suresh (Thu Oct 04 2012 - 22:53:22 CDT)
  • Esam Tolba (Thu Oct 04 2012 - 16:42:25 CDT)
• helical construction
  • Harish Lnu (Mon Dec 10 2007 - 15:31:31 CST)
  • Axel Kohlmeyer (Mon Dec 10 2007 - 15:26:30 CST)
  • Sanghyun Park (Mon Dec 10 2007 - 13:05:40 CST)
  • Harish Lnu (Mon Dec 10 2007 - 13:16:39 CST)
  • Harish Lnu (Mon Dec 10 2007 - 10:58:16 CST)
• helical content script
  • Ban Arn (Tue May 01 2012 - 09:23:52 CDT)
  • Axel Kohlmeyer (Tue May 01 2012 - 07:28:05 CDT)
  • francesco oteri (Tue May 01 2012 - 07:09:03 CDT)
  • Ban Arn (Tue May 01 2012 - 05:55:51 CDT)
• Helical King Angle
  • Mike McCallum (Wed Feb 04 2004 - 11:07:39 CST)
  • Saladino, Alex (Mon Feb 02 2004 - 16:41:45 CST)
• Helical Tilt Angle
  • Justin Gullingsrud (Wed Jan 28 2004 - 11:23:15 CST)
  • Saladino, Alex (Wed Jan 28 2004 - 08:31:56 CST)
• helices in coil
  • Justin Gullingsrud (Wed Oct 30 2002 - 10:57:34 CST)
  • John Stone (Wed Oct 30 2002 - 10:48:47 CST)
  • B. Bennion (Tue Oct 29 2002 - 18:24:13 CST)
• helicity score?
  • BIN ZHANG (Thu Feb 19 2009 - 15:14:45 CST)
  • Suman Chakrabarty (Thu Feb 19 2009 - 12:27:25 CST)
  • BIN ZHANG (Thu Jan 15 2009 - 23:39:21 CST)
• helix axes
  • Balazs Jojart (Tue Mar 31 2009 - 14:28:40 CDT)
  • Thomas C. Bishop (Tue Mar 31 2009 - 12:15:00 CDT)
  • Peter Freddolino (Tue Mar 31 2009 - 12:16:57 CDT)
  • Goutham (Tue Mar 31 2009 - 10:30:30 CDT)
  • Wei Huang (Tue Mar 31 2009 - 10:06:20 CDT)
  • Peter Freddolino (Tue Mar 31 2009 - 10:18:06 CDT)
  • Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
  • Thomas C. Bishop (Tue Mar 31 2009 - 10:08:51 CDT)
  • Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
  • Alison Grinthal (Tue Mar 31 2009 - 07:34:56 CDT)
• helix axis for A-RNA
  • Teletchéa Stéphane (Tue Jun 10 2003 - 08:11:35 CDT)
  • Vlad Cojocaru (Tue Jun 10 2003 - 07:25:09 CDT)
• helix content colvar for a 3-10 helix
  • Diship Srivastava (Tue Mar 07 2023 - 00:46:08 CST)
• Helix display
  • Timothy Driscoll (Wed Oct 26 2005 - 17:52:39 CDT)
  • John Stone (Wed Oct 26 2005 - 13:13:31 CDT)
  • Stanley Lan (Wed Oct 26 2005 - 12:57:08 CDT)
  • John Stone (Wed Oct 26 2005 - 10:04:26 CDT)
  • Scott Thibault (Wed Oct 26 2005 - 09:55:10 CDT)
• Helix motions
  • ban arn (Wed Feb 09 2011 - 10:50:45 CST)
  • Hurt, Darrell (NIH/NIAID) [E] (Mon Feb 07 2011 - 06:54:08 CST)
  • ban arn (Mon Feb 07 2011 - 05:29:31 CST)
• helix orientation
  • Vermaas, Joshua (Wed Oct 12 2016 - 14:01:53 CDT)
  • Qasim Pars (Wed Oct 12 2016 - 12:33:25 CDT)
  • Vermaas, Joshua (Wed Oct 12 2016 - 11:28:40 CDT)
  • Qasim Pars (Wed Oct 12 2016 - 11:19:09 CDT)
  • Vermaas, Joshua (Wed Oct 12 2016 - 10:36:21 CDT)
  • Qasim Pars (Wed Oct 12 2016 - 07:42:28 CDT)
• helix orientation angle
  • CPMAS Chen (Wed Nov 02 2022 - 14:42:48 CDT)
  • Jérôme Hénin (Mon Oct 31 2022 - 07:24:55 CDT)
  • CPMAS Chen (Thu Oct 27 2022 - 20:55:45 CDT)
• Hello
  • hanif mahboobi (Tue Sep 18 2012 - 18:41:20 CDT)
  • rainy908_at_yahoo.com (Fri Sep 14 2012 - 04:17:41 CDT)
  • rainy908_at_yahoo.com (Wed Sep 12 2012 - 15:49:24 CDT)
  • Eduard Schreiner (Fri Apr 29 2011 - 06:40:50 CDT)
  • kanchi subbarao rao (Fri Apr 29 2011 - 05:58:05 CDT)
  • Axel Kohlmeyer (Thu Apr 28 2011 - 10:01:18 CDT)
  • kanchi subbarao rao (Thu Apr 28 2011 - 01:38:36 CDT)
• Hello!
  • John Stone (Mon Oct 10 2005 - 10:08:13 CDT)
  • baogen duan (Sat Oct 08 2005 - 05:54:54 CDT)
  • John Stone (Mon Sep 26 2005 - 11:56:43 CDT)
  • baogen duan (Mon Sep 26 2005 - 08:52:05 CDT)
• HELP
  • Peter Freddolino (Fri Apr 07 2006 - 01:02:43 CDT)
  • Praveen Madala (Thu Apr 06 2006 - 18:26:23 CDT)
• Help about Contact Map plugin
  • John Stone (Sat May 22 2004 - 00:25:19 CDT)
  • Hua Wong (Tue May 18 2004 - 07:23:24 CDT)
• Help about Contact Map plugin. Still puzzled by atom selection.
  • Eamon Caddigan (Thu May 27 2004 - 17:48:01 CDT)
  • Hua Wong (Thu May 27 2004 - 04:05:56 CDT)
• help for modification into a small tcl script
  • hl332_at_drexel.edu (Tue May 15 2007 - 10:32:17 CDT)
• Help for the CAVE
  • Christian Wohlschlager (Wed Nov 29 2006 - 08:19:11 CST)
• Help in VMD
  • John Stone (Thu Apr 22 2004 - 10:29:50 CDT)
  • Sunando Datta (Wed Apr 21 2004 - 22:04:07 CDT)
• help on making stereo diagram
  • John Stone (Tue Jun 26 2007 - 15:46:56 CDT)
  • Zhenwei Lu (Tue Jun 26 2007 - 15:25:59 CDT)
• Help on MD animation with VMD
  • John Stone (Wed Jan 04 2006 - 18:24:15 CST)
  • yuhl (Tue Jan 03 2006 - 17:41:07 CST)
• Help on script
  • Liu, Zhanwu (Mon Mar 25 2002 - 11:09:49 CST)
  • Christian Simon (Mon Mar 25 2002 - 08:06:27 CST)
  • Liu, Zhanwu (Fri Mar 22 2002 - 14:16:53 CST)
  • John Stone (Thu Mar 21 2002 - 22:55:31 CST)
• help on trajectory density map
  • John Stone (Tue May 29 2007 - 10:07:15 CDT)
  • Kailee (Tue May 29 2007 - 07:43:46 CDT)
  • John Stone (Mon May 28 2007 - 15:34:23 CDT)
  • Axel Kohlmeyer (Mon May 28 2007 - 10:40:12 CDT)
  • Kailee (Sun May 27 2007 - 12:54:12 CDT)
• help on writing a tcl script
  • Axel Kohlmeyer (Sat May 19 2007 - 12:28:29 CDT)
  • Axel Kohlmeyer (Fri May 18 2007 - 11:22:27 CDT)
  • Kailee (Fri May 18 2007 - 10:57:58 CDT)
• Help request regarding PBCTOOLs plugin in vmd
  • Olaf Lenz (Mon May 26 2014 - 02:38:58 CDT)
• Help using trajectory ca-distance script
  • J. Rui Rodrigues (Fri Jan 07 2005 - 10:49:57 CST)
  • Ricardo Czekster (Fri Jan 07 2005 - 11:30:47 CST)
• Help with "move" command
  • Pavan Ghatty (Mon Aug 21 2006 - 11:52:50 CDT)
• Help with "move" command]
  • Peter Freddolino (Mon Aug 21 2006 - 14:40:50 CDT)
• help with animate read command
  • Jim Pfaendtner (Tue Feb 05 2008 - 11:26:47 CST)
  • John Stone (Tue Feb 05 2008 - 13:48:02 CST)
• help with badwater script
  • Jim Pfaendtner (Tue Aug 14 2007 - 15:29:12 CDT)
  • Axel Kohlmeyer (Mon Aug 13 2007 - 19:08:30 CDT)
  • Jim Pfaendtner (Mon Aug 13 2007 - 18:38:12 CDT)
• help with BIOMT
  • Brian Bennion (Fri Aug 12 2005 - 15:52:25 CDT)
  • Chang, Christopher (Fri Aug 12 2005 - 14:57:51 CDT)
  • John Stone (Fri Aug 12 2005 - 14:04:21 CDT)
  • Steve Ding (Thu Aug 11 2005 - 18:10:13 CDT)
• help with modifying script
  • Philip Fowler (Mon Nov 07 2005 - 03:05:48 CST)
  • syma (Wed Nov 02 2005 - 11:47:48 CST)
• Help with psfgen
  • Pavan Ghatty (Mon Aug 28 2006 - 08:09:46 CDT)
• Help with RDF calculation
  • Axel Kohlmeyer (Wed May 28 2014 - 15:55:45 CDT)
  • Mike Makowski (Wed May 28 2014 - 15:44:26 CDT)
  • Axel Kohlmeyer (Wed May 28 2014 - 13:45:51 CDT)
• Help with running IED in VMD
  • Kristina Woods (Tue Aug 30 2005 - 19:38:30 CDT)
• help with stereo viz on new samsung "3D" LCD and quadro card
  • John Stone (Tue Feb 18 2014 - 13:04:18 CST)
  • Carlos Simmerling (Tue Feb 18 2014 - 10:53:04 CST)
  • John Stone (Tue Feb 18 2014 - 10:34:55 CST)
  • Carlos Simmerling (Tue Feb 18 2014 - 07:06:04 CST)
  • John Stone (Mon Feb 17 2014 - 11:53:45 CST)
  • Carlos Simmerling (Fri Feb 14 2014 - 13:25:25 CST)
• Help with Tcl script
  • Jan Saam (Wed Jun 13 2007 - 04:00:03 CDT)
  • John Stone (Wed Jun 13 2007 - 03:23:27 CDT)
  • Manali Mehendale (Fri Jun 08 2007 - 11:09:56 CDT)
• Help, my molecule is being destroyed
  • John Stone (Wed Sep 24 2008 - 15:46:14 CDT)
• help: i can not type words in hostname textbox in imd
  • John Stone (Thu Sep 08 2005 - 10:15:39 CDT)
  • ÕŠΪ (Thu Sep 08 2005 - 05:47:27 CDT)
  • John Stone (Wed Sep 07 2005 - 10:00:53 CDT)
  • ÕŠΪ (Wed Sep 07 2005 - 02:00:28 CDT)
  • ÕŠΪ (Wed Sep 07 2005 - 01:36:29 CDT)
  • John Stone (Mon Sep 05 2005 - 13:28:53 CDT)
  • ÕŠΪ (Mon Sep 05 2005 - 10:36:56 CDT)
• Help: Installation Problem
  • Lee Amy (Sun Mar 01 2009 - 05:41:39 CST)
  • Axel Kohlmeyer (Sat Feb 28 2009 - 07:45:27 CST)
  • Lee Amy (Sat Feb 28 2009 - 05:19:46 CST)
  • Axel Kohlmeyer (Thu Feb 26 2009 - 10:57:30 CST)
  • Lee Amy (Wed Feb 25 2009 - 09:45:12 CST)
• HEME acting unplanar
  • PaweÅ‚ KÄ™dzierski (Tue Apr 23 2013 - 03:13:08 CDT)
  • Yarrow Madrona (Mon Apr 22 2013 - 14:10:18 CDT)
  • Axel Kohlmeyer (Mon Apr 22 2013 - 04:48:09 CDT)
  • Yarrow Madrona (Sun Apr 21 2013 - 17:49:21 CDT)
• Heme PSF file generation and hydrogen peroxide parameter files
  • HOCHEOL LIM (Thu Dec 13 2018 - 01:13:53 CST)
• Heme psfgen issue
  • sseefeld_at_uwm.edu (Fri Aug 25 2006 - 00:33:10 CDT)
• HETATM records are written as ATOM
  • Leonardo Trabuco (Wed Jul 15 2009 - 17:32:07 CDT)
  • Thomas Evangelidis (Wed Jul 15 2009 - 16:58:27 CDT)
• Hetero Chain not Recognized by Structure Manipulation Window
  • Efthymiou, Christos (Tue Aug 09 2022 - 05:01:28 CDT)
  • Efthymiou, Christos (Mon Aug 08 2022 - 11:10:16 CDT)
• Heteroatom entries
  • Mithun Mitra (Tue Apr 27 2004 - 10:17:00 CDT)
• heuristic bond computation
  • Axel Kohlmeyer (Fri Feb 08 2008 - 08:03:31 CST)
  • Olaf Lenz (Fri Feb 08 2008 - 01:33:37 CST)
  • John Stone (Thu Feb 07 2008 - 22:37:45 CST)
  • Axel Kohlmeyer (Thu Feb 07 2008 - 22:16:18 CST)
  • Tony Sheh (Thu Feb 07 2008 - 21:58:15 CST)
• hexagonal box
  • dimka (Tue Apr 17 2007 - 12:11:09 CDT)
• Hexameric periodic box
  • Georcki Ropon (Fri Aug 20 2021 - 17:36:43 CDT)
• Hi
  • rainy908_at_yahoo.com (Fri Sep 14 2012 - 02:48:50 CDT)
  • rainy908_at_yahoo.com (Fri Sep 14 2012 - 01:53:34 CDT)
  • rainy908_at_yahoo.com (Wed Sep 12 2012 - 05:13:32 CDT)
  • kanchi subbarao rao (Fri Jul 15 2011 - 04:43:19 CDT)
  • Garf (Fri Nov 05 2004 - 15:29:42 CST)
  • John Stone (Sun Jan 18 2004 - 23:44:30 CST)
  • phubbard_at_post.its.mcw.edu (Sun Jan 18 2004 - 22:09:47 CST)
  • Alfredo Valles (Sat Aug 23 2003 - 06:15:08 CDT)
• Hi all,
  • John Stone (Mon Oct 31 2011 - 16:10:14 CDT)
  • Bo Højen Justesen (Mon Oct 31 2011 - 05:47:22 CDT)
• hi to all
  • Bjoern Olausson (Thu May 19 2011 - 04:15:26 CDT)
  • Salvatore Mario Cosseddu (Tue May 17 2011 - 15:06:51 CDT)
  • Ajasja LjubetiÄ� (Tue May 17 2011 - 12:27:50 CDT)
  • kanchi subbarao rao (Tue May 17 2011 - 11:34:04 CDT)
• hide bonds
  • omid gh (Thu Sep 10 2020 - 06:12:51 CDT)
  • Raman Preet Singh (Thu Sep 10 2020 - 05:02:28 CDT)
  • omid gh (Thu Sep 10 2020 - 02:45:18 CDT)
• hide/display VMD graphics primitives
  • Chavent Mathieu (Sun May 12 2013 - 08:50:49 CDT)
  • Mayne, Christopher G (Fri May 10 2013 - 14:39:14 CDT)
  • Chavent Mathieu (Fri May 10 2013 - 12:09:52 CDT)
• hiding and renaming of graphical objects
  • John Stone (Fri Apr 28 2006 - 12:45:21 CDT)
  • Axel Kohlmeyer (Fri Apr 28 2006 - 12:32:59 CDT)
  • Enzo Vitale (Fri Apr 28 2006 - 11:54:30 CDT)
• hiding atoms outside the unit cell
  • Irem Altan (Thu Jun 09 2016 - 10:16:29 CDT)
• hiding or disabling some of the atom types
  • Axel Kohlmeyer (Wed Apr 09 2014 - 16:20:34 CDT)
  • Mehdi Eftekhari (Wed Apr 09 2014 - 15:45:31 CDT)
• HIERARCHY OF INTERACTIONS"
  • Vlad Cojocaru (Wed Oct 20 2004 - 11:10:43 CDT)
• High Bound charge values missing during charge optimization in FFTK
  • Him Bandhu Upadhyay (Fri Sep 28 2012 - 09:42:57 CDT)
  • Mayne, Christopher G (Thu Sep 27 2012 - 11:15:31 CDT)
  • Him Bandhu Upadhyay (Wed Sep 26 2012 - 22:32:44 CDT)
• High CPU usage with vmd-1.8.4b6 (99.9 %CPU ...) while using the FPS indicator
  • Stéphane Teletchéa (Tue Jan 10 2006 - 10:08:22 CST)
  • John Stone (Tue Jan 10 2006 - 09:54:52 CST)
  • Stéphane Teletchéa (Tue Jan 10 2006 - 09:37:04 CST)
• High quality movies, bmp frames and videomach=poor quality
  • Bjoern Olausson (Wed Apr 21 2010 - 08:34:00 CDT)
  • Jennifer Williams (Wed Apr 21 2010 - 05:57:11 CDT)
• high quality videos
  • Adupa Vasista (Wed Sep 30 2020 - 11:45:08 CDT)
  • omid gh (Wed Sep 30 2020 - 11:03:01 CDT)
• High res stl files
  • John Stone (Tue Nov 28 2006 - 14:09:03 CST)
  • Frederick Sachs (Tue Nov 28 2006 - 13:47:11 CST)
• high resolution images
  • John Stone (Fri May 19 2006 - 15:30:13 CDT)
  • Samuel Flores (Fri May 19 2006 - 15:15:12 CDT)
  • Axel Kohlmeyer (Thu May 11 2006 - 18:18:10 CDT)
  • Samuel Flores (Thu May 11 2006 - 17:41:12 CDT)
• high resolution ps or eps picture
  • Gadi Oron (Thu May 13 2004 - 04:48:55 CDT)
  • John Stone (Wed May 12 2004 - 20:26:54 CDT)
  • wei (Wed May 12 2004 - 14:25:21 CDT)
• high-dpi monitor issue
  • Raul Araya (Fri Aug 20 2021 - 15:19:42 CDT)
• High-end PC graphics boards for VMD...
  • John Stone (Fri Jan 04 2002 - 17:23:23 CST)
• High-Res and Eye 3D glasses and SynthaGram Monitors
  • John Stone (Wed Sep 11 2002 - 17:22:56 CDT)
  • Mads Nørregaard-Madsen (Wed Sep 11 2002 - 16:21:37 CDT)
  • Jill Vickery (Wed Sep 11 2002 - 13:53:44 CDT)
• Highlighting nearest atom ? (wrt to a tool)
  • Marc Baaden (Thu Nov 13 2003 - 10:11:44 CST)
  • John Stone (Wed Nov 12 2003 - 10:27:19 CST)
  • Eugen Leitl (Wed Nov 12 2003 - 04:22:51 CST)
  • John Stone (Tue Nov 11 2003 - 17:40:47 CST)
  • Marc Baaden (Tue Nov 11 2003 - 16:09:17 CST)
• Highlighting nearest atom ? (wrt to a tool) (fwd from eugen@leitl.org)
  • Eugen Leitl (Wed Nov 12 2003 - 04:51:06 CST)
• Hinge calculation in MD trajectory using Hingefind plug-in
  • John Stone (Fri Feb 15 2008 - 15:40:29 CST)
  • Jorge Hernandez Fernandez (Mon Feb 11 2008 - 13:02:59 CST)
• hingefind
  • Axel Kohlmeyer (Tue Jan 23 2007 - 11:23:17 CST)
  • JC Gumbart (Tue Jan 23 2007 - 10:53:39 CST)
  • li19104 (Tue Jan 23 2007 - 10:27:33 CST)
  • Axel Kohlmeyer (Mon Jan 22 2007 - 19:27:05 CST)
  • JC Gumbart (Mon Jan 22 2007 - 19:20:59 CST)
  • Shirley Li (Mon Jan 22 2007 - 18:54:11 CST)
• HIS Residue
  • zoran (Fri Jul 03 2015 - 14:56:43 CDT)
  • Jinasena Hewage (Fri Jul 03 2015 - 15:03:41 CDT)
  • Jinasena Hewage (Fri Jul 03 2015 - 14:08:04 CDT)
• histidine protonation
  • Francesco Pietra (Thu Apr 15 2021 - 09:35:08 CDT)
  • Brian Radak (Sun Apr 04 2021 - 14:56:14 CDT)
  • Gumbart, JC (Sun Apr 04 2021 - 13:39:18 CDT)
  • Francesco Pietra (Sun Apr 04 2021 - 08:53:46 CDT)
  • Miro Astore (Sat Apr 03 2021 - 19:28:57 CDT)
  • Carlos Simmerling (Sat Apr 03 2021 - 09:44:24 CDT)
  • Francesco Pietra (Sat Apr 03 2021 - 09:22:03 CDT)
  • Francesco Pietra (Sat Apr 03 2021 - 02:11:17 CDT)
  • Vermaas, Josh (Fri Apr 02 2021 - 18:35:53 CDT)
  • Gumbart, JC (Fri Apr 02 2021 - 15:43:20 CDT)
  • Vermaas, Josh (Fri Apr 02 2021 - 13:26:13 CDT)
  • Francesco Pietra (Fri Apr 02 2021 - 11:52:43 CDT)
• history in tcl/tk script
  • Axel Kohlmeyer (Mon Jan 29 2007 - 09:12:13 CST)
  • Axel Kohlmeyer (Fri Jan 26 2007 - 10:39:02 CST)
  • Rita Cassia (Fri Jan 26 2007 - 06:22:32 CST)
• hmassrepart
  • Artur Hermano (Mon Feb 14 2022 - 11:03:59 CST)
  • John Stone (Thu Feb 10 2022 - 22:03:18 CST)
  • Artur Hermano (Thu Feb 10 2022 - 18:25:43 CST)
  • CHARLES MCCALLUM (Thu Feb 10 2022 - 18:21:40 CST)
  • Artur Hermano (Thu Feb 10 2022 - 17:32:28 CST)
  • CHARLES MCCALLUM (Thu Feb 10 2022 - 17:03:56 CST)
  • Artur Hermano (Thu Feb 10 2022 - 16:05:12 CST)
• Ho to save exactly the screen structure?
  • Víctor (Mon Jun 15 2009 - 10:32:25 CDT)
  • Axel Kohlmeyer (Mon Jun 15 2009 - 10:20:28 CDT)
  • Peter Freddolino (Mon Jun 15 2009 - 09:45:56 CDT)
  • Víctor (Mon Jun 15 2009 - 02:21:43 CDT)
  • Axel Kohlmeyer (Sun Jun 14 2009 - 16:58:32 CDT)
  • Víctor (Sun Jun 14 2009 - 15:35:55 CDT)
• HOLE output visualization
  • John Stone (Mon Mar 22 2004 - 10:16:37 CST)
  • Oliver Beckstein (Wed Mar 17 2004 - 04:45:45 CST)
  • Saladino, Alex (Tue Mar 16 2004 - 16:35:12 CST)
• HOLE PROGRAM
  • John Stone (Fri Aug 29 2008 - 02:08:14 CDT)
  • Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
• Hole program for vmd hole tcl script
  • Jan Brezovsky (Wed Nov 21 2012 - 13:39:17 CST)
  • Grace Brannigan (Wed Nov 21 2012 - 11:32:27 CST)
  • Bennion, Brian (Wed Nov 21 2012 - 10:20:21 CST)
  • Jan Brezovsky (Wed Nov 21 2012 - 08:54:18 CST)
  • Ban Arn (Wed Nov 21 2012 - 08:19:48 CST)
  • Jan Brezovsky (Wed Nov 21 2012 - 05:52:37 CST)
  • Ban Arn (Wed Nov 21 2012 - 04:19:09 CST)
  • Bennion, Brian (Tue Nov 20 2012 - 12:14:30 CST)
  • John Stone (Tue Nov 20 2012 - 10:54:38 CST)
  • Ban Arn (Tue Nov 20 2012 - 08:59:20 CST)
• HOLE-VMD installation
  • Dallas Warren (Thu Jul 13 2017 - 20:07:58 CDT)
  • Sourav Pal (Tue Jul 04 2017 - 05:31:17 CDT)
• hollow sphere
  • Mike McCallum (Thu Apr 12 2018 - 13:20:30 CDT)
  • Doaa Saayed (Thu Apr 12 2018 - 12:14:56 CDT)
• Holo-Bench with VMD and Flystick2 and/or Phantom
  • Dipesh Bhattarai (Tue Nov 17 2009 - 13:04:59 CST)
  • Carsten Olbrich (Tue Nov 17 2009 - 12:03:56 CST)
• HOMO and LUMO visualization
  • DR. WOON KAI LIN (Mon Apr 18 2016 - 20:56:51 CDT)
• HOOMD plugin
  • Axel Kohlmeyer (Tue Jan 12 2010 - 13:11:32 CST)
  • Benjamin Bouvier (Tue Jan 12 2010 - 11:04:08 CST)
• HOOMD problems
  • Axel Kohlmeyer (Fri Apr 20 2012 - 20:19:43 CDT)
  • Axel Kohlmeyer (Fri Apr 20 2012 - 16:37:56 CDT)
  • Engelman, Joshua (Fri Apr 20 2012 - 15:35:52 CDT)
  • John Stone (Fri Apr 20 2012 - 15:51:16 CDT)
• hot keys & save state
  • Axel Kohlmeyer (Sun Feb 11 2007 - 13:06:08 CST)
  • Yaser Khan (Sun Feb 11 2007 - 03:01:40 CST)
• Hot repl1ca w4tches from 2008 Villa
  • Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
• Hot replica watches from 2008
  • Rudy Puckett (Sun Apr 27 2008 - 14:53:15 CDT)
• Hotkeys don't work
  • Aaron Taudt (Wed Mar 27 2013 - 03:50:41 CDT)
• how add new plugin to vmd
  • Axel Kohlmeyer (Sat Aug 11 2012 - 17:23:25 CDT)
  • hamid mosaddeghi (Sat Aug 11 2012 - 10:36:29 CDT)
  • Axel Kohlmeyer (Sat Aug 11 2012 - 08:10:46 CDT)
  • hamid mosaddeghi (Sat Aug 11 2012 - 06:54:30 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 16:27:00 CDT)
  • hamid mosaddeghi (Fri Aug 10 2012 - 15:17:20 CDT)
• How autoionzie plugin works?
  • Peter Freddolino (Tue May 22 2018 - 21:43:40 CDT)
  • Mani Kandan (Tue May 22 2018 - 14:58:21 CDT)
  • João Ribeiro (Tue May 22 2018 - 14:18:21 CDT)
  • Mani Kandan (Tue May 22 2018 - 13:46:29 CDT)
  • João Ribeiro (Tue May 22 2018 - 13:43:05 CDT)
  • João Ribeiro (Tue May 22 2018 - 13:25:25 CDT)
  • Mani Kandan (Tue May 22 2018 - 12:44:47 CDT)
• How can a known point be moved to the origin of the screen?
  • Pacci Evaristo, Felipe Fabricio (Sun Jul 21 2024 - 23:19:36 CDT)
• How can I add bonds ?
  • Germain Salvato Vallverdu (Thu Jan 27 2011 - 16:38:08 CST)
  • Germain Salvato Vallverdu (Thu Jan 27 2011 - 15:10:57 CST)
  • Axel Kohlmeyer (Thu Jan 27 2011 - 14:49:19 CST)
  • Germain Salvato Vallverdu (Thu Jan 27 2011 - 14:31:08 CST)
  • Axel Kohlmeyer (Wed Jan 26 2011 - 10:02:42 CST)
  • Germain Vallverdu (Wed Jan 26 2011 - 08:57:30 CST)
  • Germain Salvato Vallverdu (Mon Jan 24 2011 - 09:01:39 CST)
  • Axel Kohlmeyer (Mon Jan 24 2011 - 09:58:19 CST)
• How can I change the wireframe look
  • John Stone (Thu Mar 01 2001 - 14:21:30 CST)
  • Jeff Taylor (Thu Mar 01 2001 - 14:12:50 CST)
• how can I combine several selection into one selection by TCL
  • John Stone (Mon Oct 10 2005 - 10:38:37 CDT)
  • mashaojie163 (Fri Oct 07 2005 - 22:09:24 CDT)
  • mashaojie163 (Wed Oct 05 2005 - 21:55:49 CDT)
• How can I compile win32-vmd
  • John Stone (Tue Oct 11 2005 - 17:03:21 CDT)
  • mashaojie163 (Wed Oct 05 2005 - 22:26:27 CDT)
  • mashaojie163 (Mon Oct 03 2005 - 20:16:15 CDT)
  • John Stone (Mon Oct 03 2005 - 11:15:01 CDT)
  • Michel Espinoza-Fonseca (Sun Oct 02 2005 - 05:33:45 CDT)
  • mashaojie163 (Sun Oct 02 2005 - 00:18:11 CDT)
• How can i connect molecules?
  • Salomon Turgman Cohen (Wed Aug 20 2014 - 13:19:32 CDT)
  • RafaÅ‚ GÄ…sior (Wed Aug 20 2014 - 10:26:19 CDT)
• How can I create the water Solvate in vmd
  • Vermaas, Joshua (Wed May 16 2018 - 17:45:13 CDT)
  • fan li (Wed May 16 2018 - 16:56:21 CDT)
  • Dallas Warren (Tue May 15 2018 - 20:23:27 CDT)
  • Vermaas, Joshua (Tue May 15 2018 - 18:07:47 CDT)
  • fan li (Tue May 15 2018 - 16:59:11 CDT)
• How can I draw secondary structures if I only have the carbon alpha coordinates
  • Cojocaru, Vlad (Thu Aug 18 2011 - 14:46:45 CDT)
  • Axel Kohlmeyer (Thu Aug 18 2011 - 13:27:42 CDT)
  • Davide Provasi (Thu Aug 18 2011 - 13:00:15 CDT)
  • John Stone (Thu Aug 18 2011 - 12:36:30 CDT)
  • Mert Gür (Thu Aug 18 2011 - 12:20:30 CDT)
  • Tim Travers (Thu Aug 18 2011 - 12:26:14 CDT)
  • John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
  • Mert Gür (Thu Aug 18 2011 - 10:01:00 CDT)
• How can I easily show ball and stick residues across all molecules and representations?
  • John Stone (Thu Jul 18 2013 - 21:43:02 CDT)
  • Tristan Croll (Thu Jul 18 2013 - 20:18:40 CDT)
  • Josh Vermaas (Thu Jul 18 2013 - 19:48:04 CDT)
  • Dennis N Bromley (Thu Jul 18 2013 - 17:07:51 CDT)
• How can I find the rotation matrix information?
  • Myunggi Yi (Thu Jan 25 2007 - 16:11:12 CST)
• How can I get .xyzr file or .xyzrn file?
  • John Stone (Wed Sep 26 2007 - 16:38:04 CDT)
  • ChenFei (Wed Sep 26 2007 - 02:27:51 CDT)
• how can I get hole program
  • mashaojie163 (Wed Sep 29 2004 - 20:06:05 CDT)
  • John Stone (Wed Sep 29 2004 - 10:08:01 CDT)
  • mashaojie163 (Tue Sep 28 2004 - 20:01:30 CDT)
  • John Stone (Tue Sep 28 2004 - 14:59:18 CDT)
  • mashaojie163 (Sat Sep 25 2004 - 19:34:17 CDT)
• How can I get the path of the TOP molecule in the tcl console?
  • Mayne, Christopher G (Fri Dec 05 2014 - 09:05:46 CST)
  • Tristan Croll (Thu Dec 04 2014 - 22:46:08 CST)
  • Mohammad Khalkhali (Thu Dec 04 2014 - 21:04:10 CST)
  • Cun Zhang (Thu Dec 04 2014 - 20:58:18 CST)
  • Cun Zhang (Thu Dec 04 2014 - 20:20:00 CST)
  • Mohammad Khalkhali (Thu Dec 04 2014 - 19:25:50 CST)
• How can I incorporate non-natural amino acids into proteins?
  • Hideyuki Miyatake (Tue Nov 30 2021 - 21:59:13 CST)
  • Michael Robinson (Tue Nov 30 2021 - 21:52:27 CST)
  • Michael Robinson (Tue Nov 30 2021 - 21:45:06 CST)
  • Georcki Ropon (Tue Nov 30 2021 - 21:22:00 CST)
  • Hideyuki Miyatake (Tue Nov 30 2021 - 20:15:05 CST)
• How can I make VMD use the correct graphics card in a Remote Desktop session?
  • John Stone (Mon Oct 18 2021 - 11:46:18 CDT)
  • Alexander Balaeff (Thu Oct 14 2021 - 15:17:59 CDT)
• How can I measure bond length with $B!H(Bname ** and resid **" in scripts?
  • Vermaas, Joshua (Wed Dec 20 2017 - 12:21:47 CST)
  • Vermaas, Joshua (Tue Dec 19 2017 - 12:09:13 CST)
• How can I measure bond length with Q=80=9Cname_**_and_resid_**=22_in_scripts=3F?=
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• How can I measure bond length with “name ** and resid **" in scripts?
  • 本æ�‘肇 (Tue Dec 19 2017 - 22:01:20 CST)
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  • Ashar Malik (Tue Dec 19 2017 - 02:42:41 CST)
  • 本æ�‘肇 (Tue Dec 19 2017 - 01:56:45 CST)
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  • Josh Vermaas (Wed May 13 2015 - 16:29:28 CDT)
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  • JeJoon Yeon (Wed May 13 2015 - 16:17:24 CDT)
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• How do I change details of a drawing style using the text interface?
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  • Shang,Emily (Thu Aug 20 2020 - 11:03:37 CDT)
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  • Shang,Emily (Wed Aug 19 2020 - 10:24:08 CDT)
• how do I keep graphics/representations in their designated frames? (they all show up in all frames)
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  • Axel Kohlmeyer (Thu Nov 29 2012 - 08:36:17 CST)
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• How do i merge files with mergemols
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  • Axel Kohlmeyer (Thu May 01 2014 - 06:32:35 CDT)
  • Ashish .Chauniyal (Thu May 01 2014 - 05:39:14 CDT)
  • Axel Kohlmeyer (Sat Apr 26 2014 - 15:15:35 CDT)
  • Ashish .Chauniyal (Sat Apr 26 2014 - 10:10:45 CDT)
  • Axel Kohlmeyer (Sat Apr 26 2014 - 10:02:00 CDT)
  • Ashish .Chauniyal (Sat Apr 26 2014 - 09:01:14 CDT)
  • Ashish .Chauniyal (Sat Apr 26 2014 - 09:07:27 CDT)
  • Josh Vermaas (Fri Apr 25 2014 - 10:29:15 CDT)
  • Ashish .Chauniyal (Fri Apr 25 2014 - 06:14:22 CDT)
  • Josh Vermaas (Wed Apr 16 2014 - 11:04:15 CDT)
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• How do I overlap that specific nucletide between a protein and RNA?
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  • zhangh1_at_umbc.edu (Sat Mar 31 2007 - 08:43:07 CDT)
• How do I set the color scale for beta?
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  • Brian Smith (Fri Sep 24 2004 - 01:43:31 CDT)
• How do I share trajectory visualizations with other systems?
  • Marc Q. Ma (Tue Nov 15 2005 - 06:50:29 CST)
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• how do I show contacts with XXX angstroms between a protein and a ligand?
  • sajad falsafi (Tue Jun 07 2011 - 04:55:18 CDT)
  • John Stone (Mon Jun 06 2011 - 13:45:23 CDT)
  • John Stone (Mon Jun 06 2011 - 13:42:29 CDT)
  • Craig Knox (Mon Jun 06 2011 - 11:33:42 CDT)
  • sajad falsafi (Sun Jun 05 2011 - 08:06:56 CDT)
  • Dennis N Bromley (Sat Jun 04 2011 - 21:24:26 CDT)
  • Dennis N Bromley (Sat Jun 04 2011 - 13:09:48 CDT)
  • Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
  • Dennis N Bromley (Sat Jun 04 2011 - 12:27:05 CDT)
  • sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
  • Dennis N Bromley (Fri Jun 03 2011 - 22:27:58 CDT)
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  • John Stone (Fri Jan 28 2005 - 15:50:45 CST)
  • Low, John (Fri Jan 28 2005 - 15:38:03 CST)
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  • John Stone (Thu Feb 06 2014 - 09:59:23 CST)
  • Freda Lim (IHPC) (Thu Feb 06 2014 - 04:25:14 CST)
  • Kirby Vandivort (Wed Feb 05 2014 - 17:19:26 CST)
  • Freda Lim (IHPC) (Wed Feb 05 2014 - 00:12:20 CST)
• how does contactFreq.tcl work?
  • Giacomo Fiorin (Mon Oct 26 2020 - 15:49:35 CDT)
  • Ritu Arora (Mon Oct 26 2020 - 15:52:33 CDT)
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  • Tristan Croll (Sun Aug 24 2014 - 01:28:22 CDT)
  • Dawid das (Sat Aug 23 2014 - 13:55:48 CDT)
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  • Scott Pendley (Tue Sep 28 2004 - 12:18:11 CDT)
• how draw color bar?
  • Arham Amouie (Mon Jul 24 2017 - 15:10:44 CDT)
  • Arham Amouie (Mon Jul 24 2017 - 09:35:18 CDT)
• How find water mediated hydrogen bond
  • zoran (Thu Dec 11 2014 - 06:26:39 CST)
  • Axel Kohlmeyer (Wed Dec 10 2014 - 10:27:34 CST)
  • Mehdi Bagherpour (Wed Dec 10 2014 - 09:40:58 CST)
• How i can changue the charge of my protein
  • Justin Gullingsrud (Mon Aug 02 2004 - 16:06:43 CDT)
  • Alexis Salas (Mon Aug 02 2004 - 13:13:06 CDT)
• how is dcd trajectory format !
  • Emmanuel Vamvakopoulos (Fri Aug 27 1999 - 14:18:04 CDT)
• how long do ILS runs take?
  • Irene Newhouse (Mon Feb 08 2010 - 16:51:23 CST)
  • Irene Newhouse (Mon Feb 08 2010 - 14:56:53 CST)
  • John Stone (Mon Feb 08 2010 - 14:48:16 CST)
  • Irene Newhouse (Mon Feb 08 2010 - 14:05:30 CST)
• HOW MAKE CROSS CO-RELATION MATRIX
  • rajan kumar (Thu Apr 03 2014 - 04:06:55 CDT)
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  • John Stone (Tue Oct 06 2020 - 10:55:54 CDT)
  • Josh Vermaas (Thu Oct 01 2020 - 19:01:07 CDT)
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• how shall we fill in clipped molecules?
  • Albert (Wed Oct 16 2013 - 09:57:36 CDT)
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  • Albert (Wed Oct 16 2013 - 09:08:10 CDT)
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  • Yuchen Yuan (Tue Aug 20 2019 - 20:35:51 CDT)
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  • Vermaas, Joshua (Thu Aug 08 2019 - 12:18:32 CDT)
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  • Vermaas, Josh (Thu Feb 29 2024 - 07:51:51 CST)
  • Big Chungus (Wed Feb 28 2024 - 20:57:11 CST)
• How to access the subset after 'fit' and 'move' ?
  • John Stone (Mon May 08 2006 - 18:21:19 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:50:55 CDT)
• How to activate E2SUN emitter
  • John Stone (Thu Feb 03 2005 - 14:20:28 CST)
  • Harindar Keer (Thu Feb 03 2005 - 14:09:54 CST)
  • John Stone (Tue Feb 01 2005 - 15:59:56 CST)
  • Harindar Keer (Tue Feb 01 2005 - 15:42:31 CST)
  • John Stone (Mon Jan 31 2005 - 09:44:28 CST)
  • Harindar Keer (Sun Jan 30 2005 - 15:09:37 CST)
• How to add atoms to a molecule?
  • John Stone (Mon Nov 18 2002 - 00:35:43 CST)
  • Paul Darwen (Tue Nov 12 2002 - 22:39:53 CST)
• How to add bond between atoms of same same or type in every molecule
  • Remya Ann (Tue Nov 27 2018 - 07:14:59 CST)
• How to add heme to dowser plugin?
  • Irene Newhouse (Tue Mar 31 2009 - 16:48:34 CDT)
  • Irene Newhouse (Mon Mar 30 2009 - 20:39:59 CDT)
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  • Irene Newhouse (Mon Mar 30 2009 - 19:27:01 CDT)
• How to add iond for RBCG model
  • maming10002000 (Sun Mar 27 2011 - 10:23:27 CDT)
• How to add ions for RBCG
  • John Stone (Sun Mar 27 2011 - 23:42:36 CDT)
  • maming10002000 (Sun Mar 27 2011 - 09:56:02 CDT)
• How to add ions to a system with non-water solvents
  • sting (Mon May 13 2019 - 07:37:46 CDT)
  • McGuire, Kelly (Thu May 09 2019 - 23:44:19 CDT)
  • sting (Thu May 09 2019 - 21:22:55 CDT)
• How to add some small peptides to a water box randomly ?
  • q=E2=BA=E9=C3=F7?= (Sun Apr 02 2006 - 21:00:57 CDT)
  • Leandro Martínez (Sun Apr 02 2006 - 10:37:38 CDT)
  • q=E2=BA=E9=C3=F7?= (Sun Apr 02 2006 - 09:57:26 CDT)
• how to add spring between two atoms
  • SONY kaur (Mon Feb 20 2012 - 13:05:40 CST)
  • John Stone (Mon Feb 20 2012 - 13:17:23 CST)
• How to add two parallel confinement wall
  • Zhimin Xiong (Thu May 17 2007 - 09:41:48 CDT)
  • Peter Freddolino (Wed May 16 2007 - 07:34:31 CDT)
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• How to address two different geometries for same atom in PDB?
  • John Stone (Fri Oct 25 2013 - 20:52:32 CDT)
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• How to adjust different atom size separately
  • Xiaohui She (Mon Jul 21 2014 - 10:46:27 CDT)
  • Maxim Belkin (Fri Jul 18 2014 - 11:32:26 CDT)
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  • Xiaohui She (Fri Jul 18 2014 - 11:02:32 CDT)
• How to align a protein normal to lipid bilayer
  • Stéphane Téletchéa (Mon May 07 2007 - 03:44:36 CDT)
  • John Stone (Sun May 06 2007 - 23:49:40 CDT)
  • nur avneet (Sun May 06 2007 - 23:29:45 CDT)
  • Axel Kohlmeyer (Fri May 04 2007 - 08:53:30 CDT)
  • nur avneet (Fri May 04 2007 - 06:33:55 CDT)
• how to align simulated peptide in complex structure.
  • Seera Suryanarayana (Thu Feb 08 2018 - 01:13:20 CST)
• How to align two peptide molecules
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  • Sunita Patel (Fri Nov 03 2006 - 10:14:20 CST)
• how to analyse a trajectory without loading it
  • John Stone (Wed Apr 27 2022 - 13:49:18 CDT)
  • Leonardo Palmieri (Wed Apr 27 2022 - 11:38:26 CDT)
  • Geist, Norman (Tue Apr 26 2022 - 23:00:20 CDT)
  • John Stone (Tue Apr 26 2022 - 15:41:32 CDT)
  • Leonardo Palmieri (Tue Apr 26 2022 - 14:41:29 CDT)
  • Leonardo Palmieri (Tue Apr 26 2022 - 14:35:41 CDT)
  • Leonardo Palmieri (Tue Apr 26 2022 - 14:12:18 CDT)
  • John Stone (Tue Apr 26 2022 - 14:17:02 CDT)
• how to analyze fitting structure into density map
  • Ryan McGreevy (Thu Mar 03 2016 - 13:36:28 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Thu Mar 03 2016 - 13:38:59 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Thu Mar 03 2016 - 13:17:52 CST)
  • Ryan McGreevy (Wed Mar 02 2016 - 18:51:04 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Wed Mar 02 2016 - 18:58:53 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Wed Mar 02 2016 - 18:05:34 CST)
  • Ryan McGreevy (Tue Mar 01 2016 - 23:28:07 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 18:54:19 CST)
  • Ryan McGreevy (Tue Mar 01 2016 - 11:09:45 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 11:11:02 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 10:35:36 CST)
• How to apply uniform surface charge ?
  • Mani Kandan (Mon Jun 11 2018 - 22:37:08 CDT)
• how to bind peripheral membrane protein to the membrane
  • sunyeping (Tue Aug 19 2014 - 23:24:14 CDT)
• how to block psfgen warning messages
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  • Thomas Evangelidis (Wed Mar 25 2009 - 16:11:12 CDT)
• How to build a coiled alpha-helix
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• How to build a crystal structure from a pdb file ?
  • Karsten Suhre (Thu Sep 22 2005 - 02:07:16 CDT)
  • Dallas B. Warren (Wed Sep 21 2005 - 18:20:02 CDT)
  • John Stone (Wed Sep 21 2005 - 13:37:21 CDT)
  • Chunhu Tan (Tue Sep 20 2005 - 19:43:41 CDT)
• How to build a pseudo pore?
  • Cesar Millan (Sat Sep 30 2006 - 11:36:15 CDT)
• how to build an atomistic protein from a low resolution data.
  • Margaret S. Cheung (Fri Sep 15 2006 - 20:08:41 CDT)
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  • Margaret Shun Cheung (Fri Sep 15 2006 - 11:38:56 CDT)
• how to caculate the hydrogen bonds occupancy?
  • Axel Kohlmeyer (Sun May 13 2007 - 14:46:04 CDT)
  • lnubiofox (Sun May 13 2007 - 09:38:37 CDT)
• how to calculate binding free energy and contribution of individual residue?
  • Axel Kohlmeyer (Mon Apr 22 2013 - 03:35:20 CDT)
  • yp sun (Sun Apr 21 2013 - 21:40:19 CDT)
• How to calculate density profile
  • M K (Sun Dec 10 2017 - 23:21:39 CST)
• How to calculate end-to-end distance in VMD?
  • Peter Freddolino (Tue Jan 15 2008 - 10:30:10 CST)
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• How to calculate head group and acyl chain contact (separately) within 5 Anstrom of a particular protein residue?
  • Vermaas, Joshua (Wed Jan 10 2018 - 12:31:02 CST)
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  • Robert Nairn (Wed Jan 10 2018 - 08:20:14 CST)
• how to calculate hydrogen bond?
  • Axel Kohlmeyer (Sun Jul 01 2007 - 21:34:56 CDT)
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• How to calculate MSD on VMD
  • M K (Wed Nov 12 2014 - 17:54:44 CST)
  • Bharat Sharma (Wed Nov 12 2014 - 13:52:55 CST)
  • Bharat Sharma (Wed Nov 12 2014 - 12:38:19 CST)
• How to calculate number of water molecules close to a nanostructure
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• how to calculate PBC box volume in VMD?
  • Axel Kohlmeyer (Thu May 17 2012 - 02:31:06 CDT)
  • Ajasja LjubetiÄ� (Thu May 17 2012 - 02:25:15 CDT)
  • Albert (Thu May 17 2012 - 01:26:36 CDT)
• how to calculate rmsd?
  • Vermaas, Joshua (Mon Oct 09 2017 - 10:09:04 CDT)
  • Seera Suryanarayana (Mon Oct 09 2017 - 00:18:06 CDT)
• How to calculate tetrahedral order parameter ?
  • Subrata Paul (Sat Oct 05 2013 - 00:07:03 CDT)
• How to calculate the C alpha RMSD from NAMD trajectory
  • John Stone (Fri Aug 03 2007 - 10:58:13 CDT)
  • Shulin Zhuang (Fri Aug 03 2007 - 02:31:22 CDT)
• How to calculate the Hydrogen bond strengh
  • Ajasja LjubetiÄ� (Tue Nov 20 2012 - 07:05:53 CST)
  • Ф¸»¹ó (Tue Nov 20 2012 - 06:10:22 CST)
• How to calculate the Hydrogen bond strengh. .
  • Martin, Erik W (Wed Nov 21 2012 - 08:58:11 CST)
• How to calculate the volume of a molecule using vmd?
  • John Stone (Thu May 15 2008 - 23:39:45 CDT)
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• how to calculate water density in the 'hole'?
  • fariba taghavi (Sat Jun 30 2012 - 10:36:44 CDT)
  • Albert (Thu Jun 28 2012 - 07:18:11 CDT)
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  • fariba taghavi (Thu Jun 28 2012 - 01:09:05 CDT)
  • Albert (Wed Jun 27 2012 - 13:26:01 CDT)
• How to calculate water density.
  • Bennion, Brian (Mon Jun 17 2019 - 14:38:04 CDT)
  • Bennion, Brian (Mon Jun 17 2019 - 10:44:55 CDT)
  • Parviz Seifpanahi Shabane (Mon Jun 17 2019 - 09:34:57 CDT)
• how to call dssp in a script
  • Axel Kohlmeyer (Mon Aug 18 2008 - 10:42:14 CDT)
  • John Stone (Mon Aug 18 2008 - 11:17:44 CDT)
  • Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
• how to center protein?
  • Hitesh Patel (Tue Apr 24 2012 - 11:34:00 CDT)
  • Chirag Vora (Tue Apr 24 2012 - 00:04:09 CDT)
• How to change atom type and make it take effect immediately ？
  • Cun Zhang (Sat Nov 13 2010 - 08:17:24 CST)
• how to change color of the one type of atom
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  • Abolfazl Musavi (Thu Nov 08 2018 - 19:16:41 CST)
  • Vermaas, Joshua (Thu Nov 08 2018 - 18:55:32 CST)
  • Abolfazl Musavi (Thu Nov 08 2018 - 16:11:17 CST)
• how to change paramters in making movie
  • John Stone (Wed Jun 14 2006 - 13:45:14 CDT)
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• How to change resolution default setting?
  • ÕÅÏàÐÛ (Thu Jul 11 2013 - 09:02:35 CDT)
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  • Efthymiou, Christos (Thu Feb 02 2023 - 17:45:36 CST)
• How to change the center of Radial coloring method
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• how to change the color of all the C atoms in the newly created copy of representation
  • sunyeping (Fri Aug 19 2016 - 07:54:55 CDT)
• How to change the colour of isosurface
  • John Stone (Mon Oct 31 2005 - 17:29:09 CST)
  • Yang Zhenyu (Sat Oct 29 2005 - 06:42:13 CDT)
• How to change the coordinates of the dummy atoms in readvarxyz
  • Remya Ann (Fri May 04 2018 - 11:15:01 CDT)
  • Axel Kohlmeyer (Fri May 04 2018 - 11:17:19 CDT)
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• How to change the font size in VMD?
  • 정숙ì˜� (Tue Apr 11 2017 - 03:18:08 CDT)
  • John Stone (Tue Apr 11 2017 - 02:58:37 CDT)
  • 정숙ì˜� (Tue Apr 11 2017 - 02:55:52 CDT)
• How to change the python include and linkage path in configure script
  • Axel Kohlmeyer (Mon Feb 27 2012 - 13:33:18 CST)
  • Haw-Zan Goh (Mon Feb 27 2012 - 12:15:06 CST)
• How to change the VMD working Directory
  • Axel Kohlmeyer (Thu Jul 14 2011 - 09:58:26 CDT)
  • Esam Tolba (Thu Jul 14 2011 - 09:10:17 CDT)
• How to change title of display window?
  • Axel Kohlmeyer (Mon Jan 26 2009 - 12:13:13 CST)
  • JT (Mon Jan 26 2009 - 12:26:30 CST)
  • Axel Kohlmeyer (Sun Jan 25 2009 - 21:08:18 CST)
  • JT (Sun Jan 25 2009 - 20:09:35 CST)
  • John Stone (Wed Jan 17 2007 - 01:27:52 CST)
  • Rob (Wed Jan 17 2007 - 01:13:23 CST)
• how to change working directory for viewmaster?
  • Carlos Simmerling (Sat Mar 06 2021 - 16:35:29 CST)
  • John Stone (Sat Mar 06 2021 - 12:41:54 CST)
  • John Stone (Fri Mar 05 2021 - 10:12:50 CST)
  • Carlos Simmerling (Fri Mar 05 2021 - 09:56:07 CST)
• how to change working directory of VMD?
  • Nima Nouri (Wed Jul 20 2011 - 05:42:55 CDT)
  • Esam Tolba (Tue Jul 19 2011 - 18:16:29 CDT)
  • sajad falsafi (Tue Jul 19 2011 - 14:02:57 CDT)
  • Esam Tolba (Mon Jul 18 2011 - 14:02:17 CDT)
• How to characterize and change the tacticity of polymer chain
  • WuChaofu (Mon May 27 2013 - 04:44:12 CDT)
• How to choose a ligand conformation to generate a CgenFF parameter
  • Vermaas, Joshua (Fri Sep 02 2016 - 10:54:00 CDT)
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  • jrhau lung (Fri Sep 02 2016 - 00:12:03 CDT)
• How to choose CVs along DNA axis?
  • Jérôme Hénin (Tue Feb 14 2017 - 08:36:11 CST)
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• How to choose part of the volume data for isosurface visualization?
  • Axel Kohlmeyer (Tue Jan 08 2008 - 11:37:29 CST)
  • Yinglong Miao (Tue Jan 08 2008 - 10:41:02 CST)
• How to choose solid color in clipping plane render with POV-Ray
  • John Stone (Tue Aug 30 2022 - 14:45:43 CDT)
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• How to cionize DNA? example needed!
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• How to circumvent: FATAL ERROR: Periodic cell has become too small for original patch grid!
  • Maxim Paliy (Mon Apr 07 2008 - 12:36:24 CDT)
• How to close the box of situs electron density map?
  • sunyeping (Sun Sep 06 2015 - 03:36:54 CDT)
  • John Stone (Wed Sep 02 2015 - 11:01:39 CDT)
  • sunyeping (Mon Aug 31 2015 - 22:18:55 CDT)
• How to color atom by charge
  • Axel Kohlmeyer (Thu May 14 2009 - 07:01:32 CDT)
  • loc duong ding (Thu May 14 2009 - 00:46:38 CDT)
• how to color one residue with two or three different colors?
  • John Stone (Mon Mar 04 2002 - 15:48:37 CST)
  • Margaret Cheung (Sat Mar 02 2002 - 20:03:45 CST)
• How to color the atoms based on the stress
  • Axel Kohlmeyer (Wed Jun 28 2006 - 05:46:21 CDT)
  • Zhenyu Yang (Wed Jun 28 2006 - 02:17:09 CDT)
• How to compile for Python 3
  • Caio S. Souza (Sat Oct 29 2016 - 10:09:58 CDT)
  • John Stone (Thu Jul 14 2016 - 11:00:47 CDT)
  • Caio S. Souza (Tue Jul 12 2016 - 17:03:21 CDT)
• How to compile the source of VMD1.8.7 on linux system
  • John Stone (Fri Aug 07 2009 - 00:24:09 CDT)
  • Aurum Bai (Fri Aug 07 2009 - 00:10:40 CDT)
• How to compute excluded volume using volmap?
  • Axel Kohlmeyer (Sun May 24 2009 - 14:32:20 CDT)
  • Suman Chakrabarty (Sun May 24 2009 - 14:12:06 CDT)
  • Suman Chakrabarty (Tue May 12 2009 - 16:33:11 CDT)
  • Axel Kohlmeyer (Tue May 12 2009 - 08:47:43 CDT)
  • Suman Chakrabarty (Tue May 12 2009 - 07:53:12 CDT)
  • Suman Chakrabarty (Sat May 09 2009 - 14:46:31 CDT)
• How to compute the angles
  • li (Sun Jan 23 2005 - 23:08:08 CST)
• how to configure PROPKA3 in VMD 1.91?
  • Albert (Mon Mar 12 2012 - 15:11:39 CDT)
• how to configure Tachyon image render size?
  • Axel Kohlmeyer (Mon Jan 30 2012 - 15:46:42 CST)
  • Jeffrey Potoff (Mon Jan 30 2012 - 14:14:09 CST)
  • Albert (Mon Jan 30 2012 - 11:52:02 CST)
• How to configure the joystick in VMD of linux version?
  • leepersonpp (Tue Jul 26 2005 - 21:48:58 CDT)
• how to configure VMD plugin location?
  • Albert (Tue Jan 29 2013 - 04:43:59 CST)
  • Albert (Tue Jan 29 2013 - 04:02:00 CST)
  • Axel Kohlmeyer (Tue Jan 29 2013 - 04:08:18 CST)
  • Axel Kohlmeyer (Tue Jan 29 2013 - 02:32:45 CST)
  • Albert (Tue Jan 29 2013 - 01:35:26 CST)
• how to connect chains using psfgen
  • Peter Freddolino (Wed Apr 04 2007 - 11:20:30 CDT)
  • Philipp Schoen1 (Wed Apr 04 2007 - 09:49:10 CDT)
• How to constrain a atom
  • Sindrila Dutta Banik (Mon Dec 29 2014 - 10:19:13 CST)
• How to continue the calculation of NAMD in case of power failure?
  • Norman Geist (Mon May 18 2015 - 02:56:39 CDT)
  • Ashar Malik (Sun May 17 2015 - 21:13:43 CDT)
  • ¶¡êÏ (Sun May 17 2015 - 20:28:31 CDT)
• How to contribute to VMD?
  • John Stone (Thu Jul 24 2014 - 10:51:34 CDT)
  • Josh Vermaas (Wed Jul 09 2014 - 13:33:15 CDT)
  • Axel Kohlmeyer (Wed Jul 09 2014 - 13:01:10 CDT)
  • Vlastimil Zíma (Wed Jul 09 2014 - 12:29:27 CDT)
  • Axel Kohlmeyer (Wed Jul 09 2014 - 10:15:29 CDT)
  • Nuno Sousa Cerqueira (Wed Jul 09 2014 - 07:10:36 CDT)
  • Vlastimil Zíma (Wed Jul 09 2014 - 06:35:03 CDT)
• how to control "offset" and "midpoint" of color scale simultaneously using tk-console
  • Suleman Ansari (P19PH004) (Thu Dec 07 2023 - 10:53:27 CST)
  • Diego Gomes (Thu Dec 07 2023 - 09:22:00 CST)
  • Suleman Ansari (P19PH004) (Fri Dec 01 2023 - 00:54:05 CST)
• how to control the superposition (measure fit) ?
  • Vlad Cojocaru (Sun Apr 13 2014 - 07:28:33 CDT)
  • Josh Vermaas (Sat Apr 12 2014 - 09:37:43 CDT)
  • Josh Vermaas (Fri Apr 11 2014 - 10:29:18 CDT)
  • Josh Vermaas (Fri Apr 11 2014 - 09:28:15 CDT)
  • Vlad Cojocaru (Fri Apr 11 2014 - 07:16:17 CDT)
• how to convert dcd AND ALIGN molecules then to pdbs in command line
  • Yarrow Madrona (Thu Apr 11 2013 - 12:24:41 CDT)
  • Bennion, Brian (Thu Apr 11 2013 - 10:08:08 CDT)
  • Yarrow Madrona (Thu Apr 11 2013 - 08:33:14 CDT)
  • Yarrow Madrona (Thu Apr 11 2013 - 08:25:43 CDT)
  • Bennion, Brian (Wed Apr 10 2013 - 11:52:03 CDT)
  • Josh Vermaas (Wed Apr 10 2013 - 11:10:03 CDT)
  • Yarrow Madrona (Wed Apr 10 2013 - 10:41:17 CDT)
• How to convert DCD file into Amber trajectory file in vmd
  • Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
  • John Stone (Tue Mar 03 2009 - 18:35:31 CST)
  • Jianping Lin (Tue Mar 03 2009 - 17:30:33 CST)
• how to convert dcd to pdbs in command line
  • Josh Vermaas (Tue Apr 09 2013 - 20:06:05 CDT)
  • Yarrow Madrona (Tue Apr 09 2013 - 19:50:10 CDT)
  • Bennion, Brian (Tue Apr 09 2013 - 12:44:59 CDT)
  • Anthony Cruz Balberdi (Tue Apr 09 2013 - 10:00:24 CDT)
  • Josh Vermaas (Tue Apr 09 2013 - 09:25:07 CDT)
  • peter.schmidtke_at_fr.netgrs.com (Tue Apr 09 2013 - 01:12:20 CDT)
  • Yarrow Madrona (Mon Apr 08 2013 - 18:42:49 CDT)
• how to convert Desmond trajectories into PDB in text mode?
  • Axel Kohlmeyer (Thu Nov 24 2011 - 14:48:44 CST)
  • mail gromacs (Thu Nov 24 2011 - 13:09:40 CST)
• how to convert X_PLOR to CHARMM?
  • Lisa Brown (Fri Mar 25 2011 - 11:01:26 CDT)
• How to copy/paste a membrane patch to create a larger membrane?
  • thiagorrg UFC (Mon Feb 05 2018 - 12:34:43 CST)
  • Ashar Malik (Mon Feb 05 2018 - 10:14:19 CST)
  • Stefan Doerr (Mon Feb 05 2018 - 09:10:55 CST)
  • Devanand T (Mon Feb 05 2018 - 09:26:40 CST)
  • Giacomo Fiorin (Mon Feb 05 2018 - 08:55:50 CST)
  • thiagorrg UFC (Mon Feb 05 2018 - 08:34:15 CST)
• how to creat a file containing only one potassium ion
  • Michel Espinoza-Fonseca (Mon Apr 11 2005 - 16:08:26 CDT)
  • M SH (Mon Apr 11 2005 - 14:50:27 CDT)
• How to create a color ramp in VMD?
  • John Stone (Tue Nov 09 2021 - 15:57:32 CST)
  • John Stone (Thu Oct 28 2021 - 09:22:04 CDT)
  • Josh Vermaas (Thu Oct 28 2021 - 09:12:57 CDT)
  • anas forum (Wed Oct 27 2021 - 06:55:37 CDT)
• How to create an aggregation of molecules with VMD?
  • Axel Kohlmeyer (Tue May 05 2015 - 07:20:27 CDT)
  • Ivan Gregoretti (Mon May 04 2015 - 22:55:05 CDT)
  • ¶¡êÏ (Mon May 04 2015 - 22:12:05 CDT)
• How to create bonds in VMD?
  • Axel Kohlmeyer (Fri Apr 01 2011 - 11:59:54 CDT)
  • Saketh Bharadwaja (Fri Apr 01 2011 - 11:07:21 CDT)
• how to create dityrosine links
  • Roman Petrenko (Sun Jul 27 2008 - 04:14:20 CDT)
  • JC Gumbart (Sat Jul 26 2008 - 20:21:14 CDT)
  • Roman Petrenko (Sat Jul 26 2008 - 17:47:52 CDT)
• how to create psf of cyclodextrin in vmd
  • sadia tanweer (Fri Jun 19 2015 - 03:19:01 CDT)
• How to create strong bond between atoms in VMD
  • Axel Kohlmeyer (Thu Sep 20 2012 - 07:03:07 CDT)
  • ragesh c (Wed Sep 19 2012 - 04:22:41 CDT)
  • ragesh c (Wed Sep 19 2012 - 04:24:38 CDT)
• How to create the psf of an aggregation of molecules with VMD?
  • Axel Kohlmeyer (Tue May 05 2015 - 07:24:10 CDT)
  • ¶¡êÏ (Tue May 05 2015 - 06:48:39 CDT)
• How to deal with this sugar residues though psfgen?
  • q=E2=BA=E9=C3=F7?= (Mon Apr 17 2006 - 06:22:22 CDT)
• How to define an atom selection for a dynamic space
  • Josh Vermaas (Wed Mar 06 2024 - 15:15:26 CST)
  • Jacob Layton (Wed Mar 06 2024 - 13:43:16 CST)
• How to define charge group and pass it to topo writegmxtop
  • Axel Kohlmeyer (Mon Jul 02 2018 - 06:07:08 CDT)
  • fan li (Mon Jul 02 2018 - 05:17:56 CDT)
• How to delete a residue
  • John Stone (Wed Oct 27 2010 - 12:53:23 CDT)
  • Kshatresh Dutta Dubey (Tue Oct 26 2010 - 00:51:45 CDT)
• How to delete anwanted waters in a special area ?
  • Axel Kohlmeyer (Wed Jun 25 2008 - 11:51:29 CDT)
  • Leonhard Henkes (Wed Jun 25 2008 - 07:31:10 CDT)
• how to delete atoms from the command line?
  • Nicolas Sapay (Tue May 10 2005 - 09:59:30 CDT)
  • John Stone (Tue May 10 2005 - 09:58:51 CDT)
  • Nicolas Sapay (Tue May 10 2005 - 07:30:50 CDT)
• How to delete atoms in graphene sheet
  • Maxim Belkin (Thu Mar 06 2014 - 08:15:10 CST)
  • Maxim Belkin (Wed Mar 05 2014 - 11:30:29 CST)
  • Pavan Miriyala (Wed Mar 05 2014 - 11:01:58 CST)
  • Maxim Belkin (Wed Mar 05 2014 - 10:53:29 CST)
  • Pavan Miriyala (Wed Mar 05 2014 - 10:21:29 CST)
• how to delete one peptide from dimer
  • Boris Steipe (Thu Nov 15 2012 - 09:59:37 CST)
  • Ф¸»¹ó (Thu Nov 15 2012 - 07:26:22 CST)
• How to delete selected atoms from a molecule
  • Axel Kohlmeyer (Mon Nov 06 2006 - 09:30:58 CST)
  • Javaria Ahmed (Mon Nov 06 2006 - 07:22:54 CST)
• How to delete unwanted atoms from PSF
  • Sadegh Faramarzi Ganjabad (Tue May 20 2014 - 22:40:59 CDT)
• How to determine a molecule's conformation in solution
  • Hélder Bandarra Tavares (Tue Jun 02 2020 - 04:39:16 CDT)
  • Daniel Fellner (Mon Jun 01 2020 - 21:04:57 CDT)
  • Hélder Bandarra Tavares (Mon Jun 01 2020 - 11:24:27 CDT)
  • Daniel Fellner (Mon Jun 01 2020 - 11:14:29 CDT)
  • Hélder Bandarra Tavares (Mon Jun 01 2020 - 11:00:09 CDT)
• How to determine angle between two helices?
  • Ashar Malik (Wed Apr 06 2016 - 20:54:17 CDT)
  • Anjela Manandhar (Wed Apr 06 2016 - 15:09:46 CDT)
• How to determine distribution of the orientation of a molecule
  • John Stone (Thu May 05 2005 - 10:05:16 CDT)
  • Raj Gupta (Thu May 05 2005 - 07:31:56 CDT)
• How to determine periodicity and phase shift for ffTK dihedral parameter optimization?
  • Vermaas, Joshua (Sat Dec 24 2016 - 08:40:07 CST)
  • Ern Ong (Thu Dec 22 2016 - 18:19:58 CST)
  • Vermaas, Joshua (Thu Dec 22 2016 - 08:49:59 CST)
  • Ern Ong (Wed Dec 21 2016 - 03:02:05 CST)
• How to diagnose SpaceNavigator not working with VMD?
  • John Stone (Wed Oct 09 2013 - 09:55:47 CDT)
  • FX (Mon Oct 07 2013 - 04:39:13 CDT)
  • John Stone (Thu Oct 03 2013 - 09:15:06 CDT)
  • FX (Thu Oct 03 2013 - 03:35:00 CDT)
  • John Stone (Wed Oct 02 2013 - 14:12:01 CDT)
  • FX (Tue Oct 01 2013 - 07:02:56 CDT)
• How to disable automatic view rotations?
  • John Stone (Wed Jul 30 2008 - 15:50:09 CDT)
  • John Stone (Wed Jul 30 2008 - 15:47:05 CDT)
  • Roman Petrenko (Wed Jul 30 2008 - 15:37:41 CDT)
  • John Stone (Wed Jul 30 2008 - 14:34:15 CDT)
  • Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
• How to disable CUDA in VMD 1.9.1?
  • John Stone (Mon Sep 17 2012 - 10:21:06 CDT)
  • Joakim Swedberg (Sun Sep 16 2012 - 21:48:38 CDT)
• How to disable CUDA in VMD-1.9?
  • Ismail, Mohd F. (Wed Nov 30 2011 - 22:31:31 CST)
  • John Stone (Wed Nov 30 2011 - 21:18:23 CST)
  • Joaim Swedberg (Wed Nov 30 2011 - 20:29:48 CST)
• How to discard certain atoms
  • Axel Kohlmeyer (Sun May 25 2008 - 07:59:23 CDT)
  • politr_at_huji.ac.il (Sun May 25 2008 - 05:50:43 CDT)
• How to display a periodic image using TCL commands?
  • John Stone (Wed Feb 22 2006 - 11:11:23 CST)
  • Nicolas Sapay (Wed Feb 22 2006 - 11:08:28 CST)
• How to display a selection from the Tk console
  • Bjørnar Jensen (Tue Feb 12 2013 - 09:59:56 CST)
  • Raul Araya (Tue Feb 12 2013 - 08:59:33 CST)
• how to display bond btw backbone atom and sidechain atom
  • Boris Steipe (Wed Nov 24 2010 - 07:57:41 CST)
  • Axel Kohlmeyer (Wed Nov 24 2010 - 06:07:32 CST)
  • ³Ì²ýÀû (Wed Nov 24 2010 - 04:58:37 CST)
• How to display boundary crossing bonds?
  • Axel Kohlmeyer (Wed Jul 04 2007 - 11:51:57 CDT)
  • Zhimin Xiong (Tue Jul 03 2007 - 23:58:00 CDT)
• How to display Chain name in Labels
  • John Stone (Thu Dec 06 2007 - 23:53:32 CST)
  • TRINH Minh Hieu (Fri Nov 30 2007 - 07:33:57 CST)
• how to display dcd file written with catdcd using an index file
  • Irene Newhouse (Tue Oct 30 2007 - 13:30:26 CDT)
  • John Stone (Fri Oct 26 2007 - 15:50:55 CDT)
  • Irene Newhouse (Fri Oct 26 2007 - 14:08:44 CDT)
• How to display frames title ?
  • John Stone (Fri Sep 11 2015 - 01:17:55 CDT)
  • Éric Germaneau (Fri Sep 11 2015 - 01:09:13 CDT)
  • John Stone (Thu Sep 10 2015 - 15:26:33 CDT)
  • Éric Germaneau (Wed Sep 09 2015 - 16:43:44 CDT)
• how to display PDB with MODEL card
  • John Stone (Fri Jan 21 2005 - 17:32:35 CST)
  • Sichun Yang (Tue Jan 18 2005 - 22:29:20 CST)
• How to display real time when reading trr file?
  • Axel Kohlmeyer (Wed Jan 20 2010 - 05:06:06 CST)
  • Cun Zhang (Wed Jan 20 2010 - 01:59:20 CST)
  • Cun Zhang (Wed Jan 20 2010 - 01:59:16 CST)
• How to display text on helices ?
  • John Stone (Wed Jan 11 2006 - 12:58:00 CST)
  • Stéphane Teletchéa (Wed Jan 11 2006 - 02:49:16 CST)
  • Stéphane Teletchéa (Tue Jan 10 2006 - 08:47:37 CST)
  • John Stone (Mon Jan 09 2006 - 11:50:38 CST)
  • Stéphane Teletchéa (Mon Jan 09 2006 - 11:45:17 CST)
• how to display the full molecule when use "within" option?
  • Axel Kohlmeyer (Fri Feb 03 2012 - 06:32:34 CST)
  • Ajasja LjubetiÄ� (Fri Feb 03 2012 - 06:21:29 CST)
  • Albert (Fri Feb 03 2012 - 05:31:10 CST)
• how to display the periodic box in VMD
  • Olaf Lenz (Fri Oct 09 2009 - 01:49:07 CDT)
  • Axel Kohlmeyer (Thu Oct 08 2009 - 14:30:27 CDT)
  • Lan He (Thu Oct 08 2009 - 13:29:10 CDT)
  • Lan He (Thu Oct 08 2009 - 10:46:37 CDT)
  • Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
  • Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
  • Lan He (Wed Oct 07 2009 - 17:51:41 CDT)
• how to do acetylated lysine in VMD
  • Vo Cam Quy (Fri Feb 05 2010 - 14:27:46 CST)
• how to download & install QMTool plugin
  • Axel Kohlmeyer (Wed Apr 14 2010 - 10:42:52 CDT)
  • Russell, John Thomas (Wed Apr 14 2010 - 09:33:33 CDT)
• How to download high-quality images from MEMBPLUGIN -> "Membrane thickness map"
  • John Stone (Sat May 23 2020 - 02:23:03 CDT)
  • Sunidhi IIITD (Sat May 09 2020 - 06:58:21 CDT)
• How to draw a box in VMD and plot the coordinates of the system
  • Karteek Kumar (Mon Mar 28 2016 - 01:15:55 CDT)
  • ABHISHEK GUPTA (Mon Mar 28 2016 - 00:50:24 CDT)
• how to draw boxes with semi-transparent sides
  • Abolfazl Musavi (Wed Jun 05 2019 - 11:46:01 CDT)
  • Axel Kohlmeyer (Sun Jun 02 2019 - 20:21:05 CDT)
  • Strahs, Dr. Daniel Bernard (Sun Jun 02 2019 - 19:13:53 CDT)
  • Abolfazl Musavi (Sun Jun 02 2019 - 18:47:26 CDT)
  • Dallas Warren (Sun Jun 02 2019 - 17:57:21 CDT)
  • Abolfazl Musavi (Sat Jun 01 2019 - 21:58:10 CDT)
• how to draw different set of points for different frames in a trajectory my script does not work
  • maria goranovic (Wed Jul 13 2011 - 08:29:18 CDT)
  • Axel Kohlmeyer (Tue Jul 12 2011 - 15:17:50 CDT)
  • maria goranovic (Tue Jul 12 2011 - 14:19:51 CDT)
  • John Stone (Tue Jul 12 2011 - 13:19:29 CDT)
  • maria goranovic (Mon Jul 11 2011 - 04:12:11 CDT)
  • Axel Kohlmeyer (Fri Jul 08 2011 - 11:20:11 CDT)
  • maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
  • Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
  • maria goranovic (Fri Jul 08 2011 - 07:59:10 CDT)
• how to draw the bonds in VMD?
  • Axel Kohlmeyer (Sun Sep 07 2008 - 13:41:30 CDT)
  • Alfred Shaohui Zheng (Sat Sep 06 2008 - 03:07:16 CDT)
• How to efficiently update a surface
  • John Stone (Thu Dec 01 2005 - 15:06:44 CST)
  • Mario Valle (Wed Nov 30 2005 - 04:01:49 CST)
  • Axel Kohlmeyer (Tue Nov 29 2005 - 13:11:17 CST)
  • Justin Gullingsrud (Tue Nov 29 2005 - 11:25:10 CST)
  • Mario Valle (Tue Nov 29 2005 - 10:08:21 CST)
• How to embed 3-D image into powerpoint
  • John Stone (Tue Aug 05 2008 - 14:17:47 CDT)
  • Axel Kohlmeyer (Mon Aug 04 2008 - 15:57:41 CDT)
  • Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
• how to enable multiple core rendering?
  • John Stone (Thu Sep 05 2013 - 09:39:50 CDT)
  • Albert (Wed Sep 04 2013 - 03:05:15 CDT)
• How to enable Python on Windows XP
  • John Stone (Mon Aug 02 2004 - 10:00:44 CDT)
  • DePuy (Sat Jul 31 2004 - 17:12:20 CDT)
  • Ahmet Bakan (Fri Jul 30 2004 - 16:30:09 CDT)
• how to enable the vmd cachemode in .vmdrc?
  • John Stone (Mon May 22 2006 - 15:15:57 CDT)
  • Guo Zhi (Sun May 21 2006 - 02:25:38 CDT)
• how to enlarge the menu font?
  • John Stone (Fri Jan 27 2012 - 01:42:20 CST)
  • Ajasja LjubetiÄ� (Fri Jan 27 2012 - 01:29:11 CST)
  • Albert (Fri Jan 27 2012 - 01:33:48 CST)
  • Albert (Fri Jan 27 2012 - 00:18:36 CST)
• How to evaluate VMD performance properly?
  • Frederico De Santana Pontes (Thu Nov 23 2023 - 05:23:51 CST)
  • Vermaas, Josh (Tue Nov 21 2023 - 09:01:11 CST)
  • Frederico De Santana Pontes (Tue Nov 21 2023 - 07:39:39 CST)
  • Frederico De Santana Pontes (Tue Nov 21 2023 - 03:39:12 CST)
  • Diego Gomes (Mon Nov 20 2023 - 22:30:15 CST)
  • Vermaas, Josh (Mon Nov 20 2023 - 08:57:13 CST)
  • Frederico De Santana Pontes (Mon Nov 20 2023 - 06:03:40 CST)
• how to explore the frame number in clustering analysis by the clustering plugin
  • Bennion, Brian (Thu Jul 07 2016 - 16:05:37 CDT)
  • sunyeping (Thu Jul 07 2016 - 03:54:16 CDT)
• how to export into postscript with MultiPlot in tcl mode?
  • Johannes Müllegger (Mon Jun 23 2008 - 11:23:24 CDT)
  • Axel Kohlmeyer (Mon Jun 23 2008 - 10:03:21 CDT)
  • Sebastian Stolzenberg (Sun Jun 22 2008 - 19:01:53 CDT)
• how to extract a frame in a binary coordinate restart file format for NAMD ?
  • John Stone (Fri Oct 26 2012 - 10:34:23 CDT)
  • Jose Borreguero (Wed Oct 24 2012 - 14:13:37 CDT)
• how to extract atom information?
  • Axel Kohlmeyer (Thu Nov 16 2006 - 21:32:41 CST)
  • Neelanjana Sengupta (Thu Nov 16 2006 - 20:44:11 CST)
  • Axel Kohlmeyer (Thu Nov 16 2006 - 20:08:01 CST)
  • Myunggi Yi (Thu Nov 16 2006 - 19:07:49 CST)
• How to extract data from log file
  • Monika Madhavi (Mon Apr 03 2017 - 23:02:14 CDT)
  • Daniela Rivas (Mon Apr 03 2017 - 08:30:17 CDT)
  • Ajasja LjubetiÄ� (Thu Mar 30 2017 - 02:54:05 CDT)
  • Ashar Malik (Thu Mar 30 2017 - 02:18:27 CDT)
  • Monika Madhavi (Thu Mar 30 2017 - 01:21:22 CDT)
• How to extract data from NAMD log file for viscosity calculation
  • Pawel Kedzierski (Wed Aug 19 2015 - 09:23:22 CDT)
  • Ashar Malik (Tue Aug 18 2015 - 22:44:28 CDT)
  • Ern Seang Ong (Tue Aug 18 2015 - 20:38:57 CDT)
• How to extract residue names and resid from serial numbers in vmd using tcl?
  • Devanand T (Tue Jun 07 2016 - 13:07:39 CDT)
• how to find dihedral parameter
  • yanxiao han (Sat May 21 2016 - 12:51:19 CDT)
• How to find distance between n-terminal c-alpha and c-terminal c-alpha.
  • Evandro Semighini (Wed May 20 2015 - 08:29:26 CDT)
  • Seera Suryanarayana (Wed May 20 2015 - 05:29:47 CDT)
• how to find phi-psi angles of residue of our interest in NMR structure?
  • Seera Suryanarayana (Wed Mar 30 2016 - 04:23:17 CDT)
• How to find rmsd of energy minimized structure of protein
  • Ashar Malik (Wed Dec 03 2014 - 00:27:32 CST)
  • Abhijit Muley (Wed Dec 03 2014 - 00:10:12 CST)
  • Seera Suryanarayana (Tue Dec 02 2014 - 23:24:46 CST)
• how to find the sign of the dihedral angle (full message).
  • JT (Sat Mar 14 2009 - 03:21:33 CDT)
  • karthigeyan karthigeyantp (Sat Mar 14 2009 - 00:23:47 CDT)
• how to find vander waal interactions in vmd?
  • John Stone (Mon Nov 28 2016 - 00:15:51 CST)
  • Seera Suryanarayana (Tue Nov 22 2016 - 05:52:49 CST)
• how to fix structural alignment pdbs
  • Axel Kohlmeyer (Tue Jan 31 2012 - 07:22:44 CST)
  • thereal sisterdot (Tue Jan 31 2012 - 03:04:52 CST)
• How to fix the position of the lipid bilayer in the trajectories
  • Jérôme Hénin (Thu Mar 14 2019 - 12:37:58 CDT)
  • Rabeta Yeasmin (Thu Mar 14 2019 - 12:33:01 CDT)
  • Jérôme Hénin (Thu Mar 14 2019 - 12:20:05 CDT)
  • Rabeta Yeasmin (Thu Mar 14 2019 - 12:04:50 CDT)
  • Giacomo Fiorin (Thu Mar 14 2019 - 09:46:31 CDT)
  • Jérôme Hénin (Thu Mar 14 2019 - 07:52:07 CDT)
  • Axel Kohlmeyer (Wed Mar 13 2019 - 16:18:12 CDT)
  • Giacomo Fiorin (Wed Mar 13 2019 - 15:34:12 CDT)
  • Rabeta Yeasmin (Wed Mar 13 2019 - 14:38:00 CDT)
• how to generate .pdb file of graphene in VMD(nanotube builder)
  • Axel Kohlmeyer (Wed Aug 01 2012 - 06:20:08 CDT)
  • ragesh c (Wed Aug 01 2012 - 04:45:23 CDT)
• How to generate a monolayer in VMD
  • Nilesh Ingle (Thu Oct 08 2009 - 21:58:50 CDT)
  • daniel aguayo (Tue Oct 06 2009 - 13:16:43 CDT)
  • Leandro Martínez (Tue Oct 06 2009 - 06:16:24 CDT)
  • John Stone (Mon Oct 05 2009 - 20:54:03 CDT)
  • Leandro Martínez (Mon Oct 05 2009 - 19:24:44 CDT)
  • Nilesh Ingle (Mon Oct 05 2009 - 18:55:37 CDT)
• How to generate a PDB file of the protein containing one phosphoserine
  • Sunita Patel (Sat Dec 21 2013 - 06:42:12 CST)
• How to generate an index (.ind) file?
  • Carsten Olbrich (Fri Dec 05 2008 - 01:30:17 CST)
  • Anirban Ghosh (Fri Dec 05 2008 - 00:07:49 CST)
• How to generate average structure from trajectory using VMD
  • Axel Kohlmeyer (Tue Mar 26 2013 - 08:06:15 CDT)
  • Sindrila Dutta Banik (Tue Mar 26 2013 - 07:13:00 CDT)
• how to generate different starting points to do the md simulations
  • Seera Suryanarayana (Mon Mar 22 2021 - 02:02:18 CDT)
• How to generate more segments?
  • John Stone (Tue Sep 09 2008 - 01:46:41 CDT)
  • mishacat_at_udm.ru (Tue Sep 09 2008 - 01:30:05 CDT)
• How to generate random velocities?
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  • David Poger (Tue Aug 05 2008 - 00:24:10 CDT)
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  • David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
• How to reduce the size of a .dcd file?
  • Geist, Norman (Mon Aug 29 2022 - 06:07:00 CDT)
  • Efthymiou, Christos (Mon Aug 29 2022 - 04:29:13 CDT)
  • Geist, Norman (Mon Aug 29 2022 - 04:07:18 CDT)
  • Efthymiou, Christos (Mon Aug 29 2022 - 03:55:39 CDT)
  • Geist, Norman (Mon Aug 29 2022 - 01:47:51 CDT)
  • Efthymiou, Christos (Fri Aug 26 2022 - 14:04:03 CDT)
  • Giacomo Fiorin (Tue Jun 21 2022 - 06:07:54 CDT)
  • Efthymiou, Christos (Tue Jun 21 2022 - 04:35:02 CDT)
  • Geist, Norman (Sun Jun 19 2022 - 13:51:13 CDT)
  • Efthymiou, Christos (Sun Jun 19 2022 - 08:15:37 CDT)
  • Axel Kohlmeyer (Fri Jun 17 2022 - 09:45:16 CDT)
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• How to remove "Lable"
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• how to remove chain id ?
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• How to remove hydrogens from a pdb file?
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• How to remove particular residues and then view "ramachandran plot" in VMD
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• How to remove rmsd spikes due to PB
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• how to rename a representation in vmd
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• how to render higher resolution figures for publication?
  • Lixia Jin Day (Fri Apr 25 2008 - 17:09:34 CDT)
  • John Stone (Fri Apr 25 2008 - 16:07:06 CDT)
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  • John Stone (Fri Apr 04 2008 - 17:59:52 CDT)
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• how to represent H-bonds between chain A and chain B using VMD
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• how to reset a timed out connection
  • John Stone (Tue Apr 24 2007 - 14:57:41 CDT)
  • Amarda Shehu (Tue Apr 24 2007 - 13:55:24 CDT)
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  • John Stone (Tue Apr 24 2007 - 11:27:22 CDT)
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• How to rotate a molecule
  • spitaleri.andrea_at_hsr.it (Sun Oct 30 2005 - 03:12:04 CST)
  • Yang Zhenyu (Sat Oct 29 2005 - 23:32:01 CDT)
• how to run a plugin from the command line?
  • John Stone (Mon Sep 11 2006 - 23:34:01 CDT)
  • Johannes Müllegger (Mon Sep 11 2006 - 18:25:03 CDT)
• how to run catdcd from within a proc
  • Axel Kohlmeyer (Mon Nov 17 2008 - 12:48:52 CST)
  • BIN ZHANG (Mon Nov 17 2008 - 11:25:32 CST)
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  • John Stone (Thu Jan 25 2007 - 02:01:12 CST)
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• how to run VMD on IBM machines
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• How to run VMD text mode on Windows 7
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  • Axel Kohlmeyer (Sun Jun 23 2013 - 12:22:58 CDT)
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  • John Stone (Tue Jul 17 2007 - 12:07:55 CDT)
  • sally cii (Tue Jul 17 2007 - 11:58:39 CDT)
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  • sally cii (Tue Jul 17 2007 - 09:09:45 CDT)
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  • sally cii (Mon Jul 16 2007 - 07:12:14 CDT)
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  • sally cii (Fri Jul 13 2007 - 12:02:02 CDT)
• How to save a snapshot from the trajectory in amber restrt formate
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  • John Stone (Tue May 30 2006 - 17:32:24 CDT)
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• How to save Automatic psf builder script
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• how to save coordinates from others molecule files
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  • skolev_at_mnet.bg (Wed Feb 20 2013 - 08:31:15 CST)
• How to save image in SVG format?
  • Axel Kohlmeyer (Tue Jul 26 2011 - 01:36:14 CDT)
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• How to save particular md frames by VMD
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• How to save the snapshot of my protein?
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• How to save trajectory using Tcl commands?
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• How to see the original Origin (0,0,0, coordinate) of a system
  • John Stone (Thu Mar 27 2008 - 16:51:44 CDT)
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• How to select a hetatom while get rid of N-term ACE in atomselect
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• how to select a particular molecule
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• How to select a particular water molecule from a water box
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• How to shortening bonds length in a molecule ?
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  • Margaret Shun Cheung (Tue Apr 04 2006 - 16:04:00 CDT)
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  • zhangh1_at_umbc.edu (Tue Mar 13 2007 - 10:23:37 CDT)
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  • zhangh1_at_umbc.edu (Sun Mar 11 2007 - 19:39:45 CDT)
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  • John Stone (Thu Dec 22 2005 - 16:49:37 CST)
  • Michel Espinoza-Fonseca (Wed Dec 21 2005 - 12:32:36 CST)
  • lily jin (Wed Dec 21 2005 - 12:14:47 CST)
• How to use bigdcd in vmd batch mode?
  • John Stone (Fri Sep 08 2006 - 16:32:18 CDT)
  • Axel Kohlmeyer (Fri Sep 08 2006 - 12:04:35 CDT)
  • Hamsa Priya Mohana sundaram (Fri Sep 08 2006 - 09:44:45 CDT)
• How to use Inorganic Builder
  • Robert Brunner (Fri Sep 12 2008 - 10:19:45 CDT)
  • Nd S (Fri Sep 12 2008 - 03:19:12 CDT)
• how to use measure cluster and clustering plugin of VMD?
  • Axel Kohlmeyer (Fri Aug 16 2013 - 08:33:48 CDT)
  • sunyeping (Fri Aug 16 2013 - 01:39:39 CDT)
• how to use measure hbonds to calculate occupancy of all hbonds in simulation?
  • lnubiofox (Tue May 15 2007 - 09:21:33 CDT)
• How to use remote GLSL rendering capabilities?
  • John Stone (Mon May 28 2007 - 15:32:26 CDT)
  • John Stone (Mon May 28 2007 - 15:24:36 CDT)
  • Axel Kohlmeyer (Mon May 28 2007 - 10:51:07 CDT)
  • Peter Freddolino (Sun May 27 2007 - 18:10:48 CDT)
  • Cesar Luis Avila (Sun May 27 2007 - 16:05:03 CDT)
  • Axel Kohlmeyer (Thu May 24 2007 - 17:38:36 CDT)
  • Cesar Luis Avila (Thu May 24 2007 - 18:02:43 CDT)
• How to use solvate add water in amber crd/parm files?
  • John Stone (Fri Dec 10 2004 - 02:22:22 CST)
  • κ¿­ (Thu Dec 09 2004 - 20:34:12 CST)
• how to use the AutoIMD "Tool control" panel.
  • Thomas C. Bishop (Mon Apr 30 2012 - 13:52:14 CDT)
  • Axel Kohlmeyer (Mon Apr 30 2012 - 12:34:07 CDT)
  • Christopher Neale (Mon Apr 30 2012 - 11:28:19 CDT)
• How to use the Grab (or Tug) Tool
  • Marcos Ackel (Wed Sep 05 2012 - 14:10:09 CDT)
• How to use vector calculation ???
  • Axel Kohlmeyer (Fri Oct 20 2006 - 10:45:11 CDT)
  • Myunggi Yi (Thu Oct 19 2006 - 22:30:48 CDT)
• How to use VMD script "PorcupinePlot.tcl"
  • Axel Kohlmeyer (Mon Jan 31 2011 - 11:59:50 CST)
  • B.M.B. Vanschouwen (Mon Jan 31 2011 - 10:46:55 CST)
• how to view the dynamics in power point presentation
  • John Stone (Thu Mar 29 2007 - 11:43:52 CDT)
  • gadde suneetha (Thu Mar 29 2007 - 06:25:29 CDT)
• how to visualize Charmm generated files
  • Alessandro Cembran (Wed Jun 06 2007 - 18:15:41 CDT)
  • ThuZar Lwin (Wed Jun 06 2007 - 16:38:54 CDT)
• HOW TO VISUALIZE HBOND AFTER SIMULATIONS THROUGH VMD
  • Neha Gupta (Thu Oct 26 2017 - 09:43:29 CDT)
  • Ashar Malik (Wed Oct 11 2017 - 03:24:28 CDT)
  • Neha Gupta (Wed Oct 11 2017 - 00:04:10 CDT)
• How to visualize iron and chlorine properly.
  • Ignacio Fernández Galván (Tue Jun 24 2008 - 03:25:40 CDT)
  • Axel Kohlmeyer (Mon Jun 23 2008 - 10:13:41 CDT)
  • wangyong_at_dicp.ac.cn (Mon Jun 23 2008 - 19:44:35 CDT)
• How to visualize only parts of a molecular surface
  • John Stone (Wed Oct 08 2008 - 13:51:19 CDT)
  • schwarz (Wed Oct 08 2008 - 08:11:47 CDT)
• How to visualize phi maps calculated with delphi V. 4
  • John Stone (Mon Apr 23 2007 - 14:55:59 CDT)
  • Cesar Avila (Sat Apr 21 2007 - 20:05:42 CDT)
  • John Stone (Fri Apr 20 2007 - 21:07:01 CDT)
  • Cesar Luis Avila (Fri Apr 20 2007 - 18:36:48 CDT)
• How to visualize the moving periodic boundaries in VMD
  • Axel Kohlmeyer (Wed Mar 25 2015 - 20:07:42 CDT)
  • Yihua Zhou (Wed Mar 25 2015 - 16:15:26 CDT)
• How to visualize unusual amino acid in VMD with Cartoon or ribbon representation
  • Dallas Warren (Wed Jul 01 2020 - 17:55:56 CDT)
  • Chetna Tyagi (Wed Jul 01 2020 - 09:29:46 CDT)
• how to visualize water movement over trajectory
  • Yarrow Madrona (Sun Apr 07 2013 - 13:27:04 CDT)
  • PaweÅ‚ KÄ™dzierski (Sun Apr 07 2013 - 10:30:22 CDT)
  • amin_at_imtech.res.in (Sun Apr 07 2013 - 02:12:49 CDT)
  • Yarrow Madrona (Sat Apr 06 2013 - 20:46:00 CDT)
• How to work on multiple pdbs by tcl script?
  • Ajasja LjubetiÄ� (Tue Mar 22 2016 - 06:04:25 CDT)
  • Axel Kohlmeyer (Tue Mar 22 2016 - 05:47:43 CDT)
  • Ajasja LjubetiÄ� (Tue Mar 22 2016 - 05:26:44 CDT)
  • Seera Suryanarayana (Tue Mar 22 2016 - 03:53:41 CDT)
• how to wrap a protein with periodic waters
  • Olaf Lenz (Mon Aug 15 2011 - 02:43:51 CDT)
  • Thomas Evangelidis (Fri Aug 12 2011 - 10:19:47 CDT)
• how to wrap trajectory into truncated octahedral box
  • David A. Case (Mon Jul 30 2007 - 11:30:15 CDT)
  • Axel Kohlmeyer (Thu Jul 26 2007 - 11:50:43 CDT)
  • Olaf Lenz (Thu Jul 26 2007 - 09:20:03 CDT)
  • sally cii (Thu Jul 26 2007 - 07:03:51 CDT)
  • Olaf Lenz (Wed Jul 25 2007 - 12:39:39 CDT)
  • Rachel (Wed Jul 25 2007 - 10:51:54 CDT)
• How to write a netcdf file in vmd from already loaded netcdf/dcd trajectory
  • John Stone (Sat Dec 25 2021 - 00:27:21 CST)
  • Prathit Chatterjee (Thu Dec 23 2021 - 09:08:51 CST)
  • Axel Kohlmeyer (Thu Dec 23 2021 - 06:16:31 CST)
  • Prathit Chatterjee (Thu Dec 23 2021 - 05:00:44 CST)
• How to write coordinates to a pdb without replacing existing entries
  • Monika Madhavi (Mon Jul 06 2015 - 22:57:49 CDT)
  • Norman Geist (Mon Jul 06 2015 - 04:58:16 CDT)
  • Monika Madhavi (Mon Jul 06 2015 - 04:01:35 CDT)
  • Norman Geist (Mon Jul 06 2015 - 02:28:01 CDT)
  • Monika Madhavi (Sun Jul 05 2015 - 23:55:29 CDT)
  • Monika Madhavi (Thu Mar 12 2015 - 03:51:49 CDT)
  • Josh Vermaas (Mon Mar 09 2015 - 08:30:25 CDT)
  • Norman Geist (Mon Mar 09 2015 - 06:08:36 CDT)
  • Monika Madhavi (Mon Mar 09 2015 - 05:26:18 CDT)
  • Norman Geist (Mon Mar 09 2015 - 04:42:44 CDT)
  • Monika Madhavi (Mon Mar 09 2015 - 01:24:11 CDT)
  • Joaquim Rui de Castro Rodrigues (Sun Mar 08 2015 - 13:50:57 CDT)
  • Monika Madhavi (Sun Mar 08 2015 - 12:17:16 CDT)
  • Monika Madhavi (Sun Mar 08 2015 - 12:33:29 CDT)
  • Joaquim Rui de Castro Rodrigues (Sun Mar 08 2015 - 11:41:18 CDT)
  • Monika Madhavi (Sun Mar 08 2015 - 09:33:03 CDT)
• how to write out the coordinates of center of mass of a particular residue
  • Xiongce Zhao (Wed Jun 01 2005 - 12:36:45 CDT)
• how to write out the coordinates of center of mass of a particularresidue
  • Ekta Khurana (Thu Jun 02 2005 - 10:12:00 CDT)
  • Blake Charlebois (Wed Jun 01 2005 - 21:39:49 CDT)
• how to write out the dcd file by vmd python command?
  • Axel Kohlmeyer (Tue Feb 22 2011 - 07:19:28 CST)
  • mjyang (Mon Feb 21 2011 - 22:40:48 CST)
  • mjyang (Mon Feb 21 2011 - 22:09:17 CST)
• how to write pbc option in python?
  • Caio S. Souza (Mon Apr 22 2013 - 10:03:32 CDT)
  • Axel Kohlmeyer (Mon Apr 22 2013 - 02:50:40 CDT)
  • Olaf Lenz (Mon Apr 22 2013 - 02:00:37 CDT)
  • Albert (Sun Apr 21 2013 - 11:50:19 CDT)
• how to write topology for Metal in protein
  • Axel Kohlmeyer (Fri Aug 10 2012 - 02:07:38 CDT)
  • aramice Malkhasian (Thu Aug 09 2012 - 17:28:33 CDT)
• HOW TO: visualization of electron density maps
  • Dallas Warren (Mon Jan 24 2005 - 15:34:41 CST)
  • John Stone (Mon Jan 24 2005 - 14:31:33 CST)
  • Dieter Blaas (Mon Jan 24 2005 - 04:28:00 CST)
• How upgrade a molfile plugin?
  • Axel Kohlmeyer (Sun Feb 16 2014 - 13:54:46 CST)
  • Arham Amouie (Sun Feb 16 2014 - 12:28:17 CST)
• how vmd calculate dihedral angle
  • John Stone (Fri Mar 15 2002 - 10:18:23 CST)
  • Yufang Wang (Fri Mar 15 2002 - 00:07:15 CST)
• how vmd return actual vector for given atom
  • Josh Vermaas (Tue Apr 23 2013 - 10:21:03 CDT)
  • Steven Neumann (Tue Apr 23 2013 - 06:43:25 CDT)
  • Axel Kohlmeyer (Thu Apr 18 2013 - 11:47:28 CDT)
  • Steven Neumann (Thu Apr 18 2013 - 10:36:50 CDT)
• howto select stain reveal map
  • Axel Kohlmeyer (Thu Mar 26 2009 - 06:41:07 CDT)
  • Francesco Pietra (Thu Mar 26 2009 - 02:30:29 CDT)
• HRTEM
  • John Stone (Fri Aug 07 2009 - 12:22:53 CDT)
  • Joshua D. Moore (Fri Aug 07 2009 - 02:20:45 CDT)
• Hybond calulator and display
  • Jerry Ebalunode (Fri Jan 16 2004 - 12:24:30 CST)
  • John Stone (Fri Jan 16 2004 - 13:07:09 CST)
• Hydration
  • John Stone (Wed May 18 2005 - 13:36:52 CDT)
  • Cetin Baloglu (Wed May 18 2005 - 03:44:34 CDT)
• Hydration dynamics:Phrase selection problem in vmd
  • Axel Kohlmeyer (Mon Jul 18 2011 - 09:40:28 CDT)
  • Kartheek (Mon Jul 18 2011 - 07:09:02 CDT)
• Hydration Shell RDF -- VMD Nomenclature Needed
  • Jim Parker (Mon Mar 02 2015 - 21:20:19 CST)
  • Phelan Jr., Frederick R. Dr. (Mon Feb 23 2015 - 15:31:03 CST)
• hydration shell volume
  • divya nayar (Thu Jun 23 2011 - 01:43:55 CDT)
• Hydrogen and Water Molecules.
  • Yu Liu (Wed Jun 27 2007 - 11:13:40 CDT)
• Hydrogen bond angle
  • Karteek Kumar (Tue Aug 04 2015 - 01:59:26 CDT)
  • Norman Geist (Tue Aug 04 2015 - 01:29:48 CDT)
  • debra ragland (Mon Aug 03 2015 - 11:58:16 CDT)
  • hirdesh kumar (Fri Aug 27 2010 - 23:25:21 CDT)
  • Axel Kohlmeyer (Fri Aug 27 2010 - 09:41:22 CDT)
  • hirdesh kumar (Fri Aug 27 2010 - 08:19:29 CDT)
• Hydrogen Bond Calculation in VMD for DNA in VMD
  • Josh Vermaas (Tue Oct 29 2013 - 09:57:38 CDT)
  • Himanshu Joshi (Tue Oct 29 2013 - 02:16:11 CDT)
• hydrogen bond calculations
  • Sasthi Charan Mandal (Sun Mar 17 2019 - 02:07:16 CDT)
• hydrogen bond criteria
  • Alexandre PERRET (Thu Dec 05 2013 - 04:31:55 CST)
• hydrogen bond cutoff value
  • Axel Kohlmeyer (Mon Dec 02 2013 - 23:31:28 CST)
  • sunyeping (Mon Dec 02 2013 - 21:37:00 CST)
• hydrogen bond energy
  • John Stone (Tue Jun 28 2005 - 11:09:04 CDT)
  • shgnwgn_at_eden.rutgers.edu (Tue Jun 28 2005 - 10:50:25 CDT)
  • Axel Kohlmeyer (Thu Feb 26 2004 - 03:46:52 CST)
  • Sichun Yang (Wed Feb 25 2004 - 12:31:45 CST)
• Hydrogen bond energy calculation
  • Aditya Padhi (Wed May 23 2012 - 22:56:10 CDT)
• Hydrogen bond occupancy
  • Josh Vermaas (Wed Jun 04 2014 - 22:09:45 CDT)
  • bharat gupta (Wed Jun 04 2014 - 18:37:26 CDT)
  • bharat gupta (Fri May 30 2014 - 18:33:20 CDT)
  • Jeremiah Babcock (Fri May 30 2014 - 14:40:15 CDT)
  • Josh Vermaas (Fri May 30 2014 - 07:11:42 CDT)
  • Jeremiah Babcock (Fri May 30 2014 - 03:25:40 CDT)
  • bharat gupta (Thu May 29 2014 - 21:23:18 CDT)
  • John Stone (Thu May 29 2014 - 21:18:48 CDT)
  • bharat gupta (Thu May 29 2014 - 20:55:55 CDT)
• Hydrogen bond representation and cut off distance
  • John Stone (Fri Sep 24 2004 - 10:51:02 CDT)
  • Uday Chippada (Thu Sep 23 2004 - 13:53:51 CDT)
• hydrogen bonding
  • Justin Gullingsrud (Wed Oct 30 2002 - 10:54:13 CST)
  • John Stone (Wed Oct 30 2002 - 10:37:02 CST)
  • Y. U. Sasidhar (Mon Oct 28 2002 - 21:52:48 CST)
• hydrogen bonding calculation
  • Snehasis Chatterjee (Thu Jul 02 2020 - 15:54:47 CDT)
• Hydrogen Bonding energy
  • Goutham (Thu Jul 23 2009 - 20:56:52 CDT)
• hydrogen bonds
  • John Stone (Mon Mar 25 2013 - 15:30:42 CDT)
  • Knut Jørgen Bjuland (Wed Sep 22 2010 - 11:19:53 CDT)
  • ban arn (Tue Sep 21 2010 - 11:17:10 CDT)
  • politr_at_huji.ac.il (Fri May 30 2008 - 06:05:12 CDT)
• Hydrogen bonds plugin for liquid water
  • Gupta, S.S. (Somil) (Tue Aug 18 2015 - 04:34:10 CDT)
• Hydrogen bonds plugin obscures charged atoms -- help!
  • Hurt, Darrell (NIH/NIAID) [E] (Thu Apr 08 2010 - 15:32:18 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Thu Apr 08 2010 - 11:48:39 CDT)
• hydrogen bonds tcl script
  • Axel Kohlmeyer (Tue Apr 28 2009 - 10:17:26 CDT)
  • politr_at_huji.ac.il (Tue Apr 28 2009 - 09:40:12 CDT)
• Hydrogen bonds with different evaluations
  • Florentina Tofoleanu (Thu Nov 26 2009 - 05:16:34 CST)
• Hydrogen mass repartition PSFGen2.0
  • Gumbart, JC (Sun Aug 08 2021 - 07:40:49 CDT)
  • Ropon-Palacios G. (Sat Aug 07 2021 - 19:35:14 CDT)
  • René Hafner TUK (Sat Aug 07 2021 - 18:53:39 CDT)
  • Ropon-Palacios G. (Sat Aug 07 2021 - 18:20:43 CDT)
  • Gumbart, JC (Sat Aug 07 2021 - 17:32:23 CDT)
  • René Hafner TUK (Sat Aug 07 2021 - 15:21:21 CDT)
  • Ropon-Palacios G. (Sat Aug 07 2021 - 15:20:53 CDT)
  • Geist, Norman (Sat Aug 07 2021 - 15:19:47 CDT)
  • Geist, Norman (Sat Aug 07 2021 - 15:17:34 CDT)
  • Ropon-Palacios G. (Sat Aug 07 2021 - 14:57:32 CDT)
  • René Hafner TUK (Sat Aug 07 2021 - 14:14:49 CDT)
  • Ropon-Palacios G. (Sat Aug 07 2021 - 13:52:04 CDT)
  • Geist, Norman (Sat Aug 07 2021 - 13:43:23 CDT)
  • Georcki Ropon (Sat Aug 07 2021 - 11:55:41 CDT)
  • René Hafner TUK (Sat Aug 07 2021 - 04:20:23 CDT)
  • Ropon-Palacios G. (Fri Aug 06 2021 - 13:52:10 CDT)
• Hydrogens in vmd
  • snoze pa (Thu Jan 03 2008 - 16:19:05 CST)
  • snoze pa (Thu Jan 03 2008 - 16:15:55 CST)
  • Peter Freddolino (Thu Jan 03 2008 - 16:21:53 CST)
  • snoze pa (Thu Jan 03 2008 - 15:53:31 CST)
  • snoze pa (Thu Jan 03 2008 - 15:30:40 CST)
  • Peter Freddolino (Thu Jan 03 2008 - 15:38:31 CST)
  • L. Michel Espinoza-Fonseca (Thu Jan 03 2008 - 15:17:54 CST)
  • John Stone (Thu Jan 03 2008 - 14:26:16 CST)
  • snoze pa (Thu Jan 03 2008 - 14:08:31 CST)
  • Peter Freddolino (Thu Jan 03 2008 - 14:25:05 CST)
• hydrophobic accessible surface area
  • Jorgen Simonsen (Tue Aug 24 2010 - 13:55:20 CDT)
• Hydrophobic interaction
  • Nicholas Musolino (Fri Jun 18 2010 - 08:40:44 CDT)
  • Nicolas Sapay (Fri Jun 18 2010 - 08:25:09 CDT)
  • ban arn (Fri Jun 18 2010 - 08:18:23 CDT)
  • Axel Kohlmeyer (Fri Jun 18 2010 - 08:10:23 CDT)
  • Axel Kohlmeyer (Fri Jun 18 2010 - 08:25:36 CDT)
  • ban arn (Fri Jun 18 2010 - 07:30:45 CDT)
  • ban arn (Fri Jun 18 2010 - 06:53:37 CDT)
  • ban arn (Fri Jun 18 2010 - 05:59:43 CDT)
• hydrophobic interaction between peptide vs membrane
  • Deng, Jinxia (Nancy) (Mon Feb 15 2016 - 10:51:28 CST)
• Hydrophobic mismatch script
  • kanchi subbarao rao (Mon Apr 23 2012 - 06:11:24 CDT)
  • Ban Arn (Mon Apr 23 2012 - 05:29:34 CDT)
  • francesco oteri (Mon Apr 23 2012 - 05:17:13 CDT)
  • Ban Arn (Mon Apr 23 2012 - 04:08:28 CDT)
• hydrophobic surface area calculation
  • John Stone (Mon Mar 08 2004 - 17:38:54 CST)
  • Markus Laub (Mon Mar 08 2004 - 05:01:59 CST)
• Hydrophobicity
  • Justin Gullingsrud (Sun Oct 06 2002 - 13:37:35 CDT)
  • Markus Laub (Sat Oct 05 2002 - 17:42:20 CDT)
• hydrophobicity on the Connolly surface
  • John Stone (Thu Jan 02 2003 - 10:33:33 CST)
  • Denys Bashtovyy (Thu Jan 02 2003 - 07:04:10 CST)
• Hydrophobicity plots in VMD
  • John Stone (Tue Nov 27 2007 - 16:27:58 CST)
  • Avell Diroll (Tue Nov 27 2007 - 03:22:21 CST)
  • aneesh cna (Mon Nov 26 2007 - 23:31:43 CST)
  • John Stone (Mon Nov 26 2007 - 11:16:08 CST)
  • aneesh cna (Mon Nov 26 2007 - 04:09:44 CST)
  • Axel Kohlmeyer (Sun Nov 25 2007 - 12:49:29 CST)
  • aneesh cna (Sat Nov 24 2007 - 22:50:51 CST)
  • Peter Freddolino (Sat Nov 24 2007 - 08:36:20 CST)
  • aneesh cna (Sat Nov 24 2007 - 00:33:38 CST)
• Hydrophobicity Scale
  • Ramya Gamini (Thu Mar 05 2009 - 20:36:34 CST)
  • Ramya Gamini (Thu Mar 05 2009 - 20:20:42 CST)
  • Goutham (Thu Mar 05 2009 - 19:36:46 CST)
  • John Stone (Thu Mar 05 2009 - 19:17:49 CST)
  • Goutham (Thu Mar 05 2009 - 18:58:41 CST)
• hyperchem files
  • Laurence F. Wood (Thu May 10 2001 - 14:11:24 CDT)
  • Mauricio Carrillo Tripp (Thu May 10 2001 - 10:22:44 CDT)
• I am sorry
  • Tauna Rignall (Wed Nov 12 2003 - 11:25:31 CST)
• I can not load mdcrd file after simulation with sander
  • John Stone (Wed Jul 07 2004 - 14:16:33 CDT)
  • Valodymyr Nechyporuk-Zloy (Tue Jul 06 2004 - 15:44:57 CDT)
• I can not see "Edit Entry" window.
  • Mayne, Christopher G (Wed May 06 2015 - 08:57:22 CDT)
  • Hyunjin Kim (Tue May 05 2015 - 12:47:02 CDT)
• I can't not see my post in Archive list
  • John Stone (Sat Sep 17 2011 - 23:42:43 CDT)
  • hongphuc nguyen (Sat Sep 17 2011 - 22:52:58 CDT)
• I have working PETE xbgf file, now how to combine into membrane?
  • Peter Freddolino (Wed Dec 27 2006 - 13:21:27 CST)
  • wolfinbm_at_uci.edu (Wed Dec 27 2006 - 11:34:11 CST)
• I need a bid trajectory please!!!
  • Thomas Evangelidis (Fri Dec 26 2008 - 16:01:33 CST)
  • Axel Kohlmeyer (Fri Dec 26 2008 - 14:20:38 CST)
  • Thomas Evangelidis (Thu Dec 25 2008 - 16:54:44 CST)
• i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster???
  • Ashar Malik (Sun Mar 25 2018 - 20:44:48 CDT)
  • Denish Poudyal (Sun Mar 25 2018 - 20:22:34 CDT)
• I want to change back ground color
  • Fernando Vallejos-Burgos (Tue Jul 05 2016 - 02:22:17 CDT)
  • Seera Suryanarayana (Tue Jul 05 2016 - 01:16:24 CDT)
• I would like to get a trajectory file in PDB. Can I use like data frame in VMD?
  • Vermaas, Joshua (Wed Dec 13 2017 - 12:24:47 CST)
  • Ashar Malik (Wed Dec 13 2017 - 02:40:25 CST)
  • Ashar Malik (Wed Dec 13 2017 - 02:37:16 CST)
  • 本æ�‘肇 (Wed Dec 13 2017 - 00:41:56 CST)
• I'm back..
  • John Stone (Tue Jul 08 2008 - 16:24:12 CDT)
• I'm sorry ... please ignore the junk !!
  • Vlad Cojocaru (Mon Apr 09 2007 - 05:50:54 CDT)
• I've tried latest vmd but still problems with mdcrd/crd/rst parser
  • John Stone (Fri Feb 27 2004 - 14:07:28 CST)
  • Teletchéa Stéphane (Fri Feb 27 2004 - 12:19:56 CST)
• I: vmd on windows
  • John Stone (Thu Dec 29 2011 - 22:21:19 CST)
  • Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
  • Sergio Decherchi (Tue Dec 20 2011 - 07:48:55 CST)
• IC from paratool
  • Jan Saam (Fri Mar 02 2007 - 12:41:59 CST)
  • Grazia Daminelli (Mon Feb 26 2007 - 02:35:27 CST)
• icon and desktop file for VMD
  • René Genz (Mon Dec 11 2017 - 16:40:27 CST)
• icon in LABEL
  • John Stone (Wed Jul 17 2002 - 10:10:03 CDT)
  • Pascal Bonnet (Wed Jul 17 2002 - 08:17:58 CDT)
• Ideal charge optimization strategy for atoms with existing ff parameters
  • Chitrak Gupta (Wed Oct 21 2015 - 10:45:08 CDT)
  • Bryan Roessler (Tue Oct 20 2015 - 15:34:48 CDT)
  • Chitrak Gupta (Mon Oct 19 2015 - 10:59:52 CDT)
  • Mayne, Christopher G (Mon Oct 19 2015 - 09:50:09 CDT)
  • Bryan Roessler (Mon Oct 19 2015 - 09:45:32 CDT)
  • Bryan Roessler (Fri Oct 16 2015 - 10:01:53 CDT)
  • Mayne, Christopher G (Fri Oct 16 2015 - 02:50:39 CDT)
  • Bryan Roessler (Tue Oct 13 2015 - 14:08:02 CDT)
• Identifying salt bridges between chains
  • John Stone (Fri Dec 18 2020 - 11:12:19 CST)
  • Tiglath Moradkhan (Wed Dec 16 2020 - 14:32:10 CST)
• identifying the specific coordinates of a voxel
  • John Stone (Wed Aug 30 2017 - 14:50:24 CDT)
  • Daniel Strahs (Thu Aug 03 2017 - 12:30:30 CDT)
• Idle script error
  • Simon Wheeler (Thu Mar 28 2019 - 05:39:37 CDT)
  • Joao Ribeiro (Mon Mar 25 2019 - 09:11:52 CDT)
  • Simon Wheeler (Mon Mar 25 2019 - 06:07:58 CDT)
• IDs of representations
  • Leonardo Trabuco (Tue Dec 15 2009 - 11:30:26 CST)
  • Carsten Olbrich (Tue Dec 15 2009 - 03:30:54 CST)
• IED
  • Vahdati N. (Wed Jun 18 2008 - 10:26:37 CDT)
  • John Stone (Thu Oct 12 2006 - 15:28:12 CDT)
  • Ran Friedman (Thu Oct 12 2006 - 08:23:42 CDT)
• ied - again
  • Nuno R. L. Ferreira (Tue Jul 19 2005 - 13:41:57 CDT)
• IED 2.02 and VMD 1.8.7
  • Vlad Cojocaru (Mon Dec 20 2010 - 09:31:41 CST)
  • Jérôme Hénin (Wed Nov 03 2010 - 05:44:06 CDT)
  • Jérôme Hénin (Wed Oct 13 2010 - 16:33:02 CDT)
  • Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 09:47:39 CDT)
  • Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 09:28:13 CDT)
  • Hannes Loeffler (Wed Oct 13 2010 - 09:24:33 CDT)
  • Axel Kohlmeyer (Wed Oct 13 2010 - 09:23:19 CDT)
  • Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 08:33:00 CDT)
• IED analysis
  • John Stone (Mon Nov 24 2008 - 10:34:42 CST)
  • ÖÜÎIJý (Wed Nov 19 2008 - 02:19:19 CST)
• ied and gypython
  • Axel Kohlmeyer (Thu Jul 16 2009 - 09:22:39 CDT)
  • gurunath katagi (Thu Jul 16 2009 - 02:16:21 CDT)
• IED and output of labels
  • Vlad Cojocaru (Mon Feb 07 2005 - 08:55:35 CST)
• IED individual eigenvectors/movie
  • John Stone (Thu Nov 02 2006 - 11:27:52 CST)
  • Vlad Cojocaru (Thu Nov 02 2006 - 05:40:08 CST)
  • nadiav_at_soton.ac.uk (Thu Nov 02 2006 - 05:04:05 CST)
• IED on MacOSX 10.3.9
  • Axel Kohlmeyer (Tue Jun 10 2008 - 07:03:30 CDT)
  • Peter Jones (Tue Jun 10 2008 - 05:54:54 CDT)
• ied on vmd
  • John Stone (Tue Apr 04 2006 - 16:41:02 CDT)
  • L. Michel Espinoza-Fonseca (Tue Apr 04 2006 - 16:11:30 CDT)
• IED problem update: IED works only with vmd 1.8.2
  • John Stone (Mon Oct 17 2005 - 17:27:23 CDT)
  • Vlad Cojocaru (Mon Oct 17 2005 - 05:21:28 CDT)
• IED with VMD 1.8.3 on Debian
  • Vlad Cojocaru (Thu Oct 13 2005 - 07:50:52 CDT)
• ied with VMD 1.9.1
  • hannes.loeffler_at_stfc.ac.uk (Fri Jan 18 2013 - 12:35:19 CST)
  • Antonija Tomiæ (Fri Jan 18 2013 - 09:03:05 CST)
• IED, output from nmode (amber)
  • David A. Case (Tue Sep 12 2006 - 10:18:35 CDT)
  • nadiav_at_soton.ac.uk (Fri Sep 08 2006 - 07:55:42 CDT)
• IED-plugin
  • John Stone (Thu Jan 26 2006 - 12:45:52 CST)
  • Nadia Vahdati (Thu Jan 26 2006 - 04:46:40 CST)
• ied.py : tk.h version (8.3) doesn't match libtk.a version (8.4)
  • John Stone (Wed May 18 2005 - 13:34:10 CDT)
  • IBC strbio (Wed May 18 2005 - 05:38:02 CDT)
• IED/Tkinter problems
  • Birgitte Maria Elisabeth Brydsoe (Fri Sep 24 2010 - 09:13:43 CDT)
• IED2.02 Problem
  • John Stone (Tue Sep 06 2005 - 09:38:58 CDT)
  • xzp02_at_mails.tsinghua.edu.cn (Tue Sep 06 2005 - 07:27:16 CDT)
• If I want to modify measure.C, what should I do?
  • John Stone (Mon Apr 09 2007 - 16:52:50 CDT)
  • lanhua (Mon Apr 09 2007 - 15:59:18 CDT)
• IFD complex for solvation
  • Fotis Baltoumas (Tue Oct 09 2018 - 05:18:14 CDT)
  • Stephani Macalino (Tue Oct 09 2018 - 02:08:30 CDT)
• Ignore all the errors and load severely wrong structure in XYZ format
  • Bharat Sharma (Sat Jun 10 2017 - 16:07:40 CDT)
  • Bharat Sharma (Sat Jun 10 2017 - 09:48:06 CDT)
• ignore gpu on startup
  • John Stone (Thu Jan 09 2020 - 08:43:29 CST)
  • Miro Astore (Thu Jan 09 2020 - 03:07:13 CST)
• illegal mouse mode
  • John Stone (Tue Nov 15 2005 - 11:24:07 CST)
  • Dan Wright (Fri Nov 11 2005 - 17:00:07 CST)
  • Axel Kohlmeyer (Fri Nov 11 2005 - 13:33:13 CST)
• illegal stereo mode
  • Axel Kohlmeyer (Fri Jan 28 2011 - 09:23:45 CST)
  • Nicolas Belloy (Fri Jan 28 2011 - 08:58:11 CST)
  • John Stone (Fri Jan 28 2011 - 08:55:05 CST)
  • Nicolas Belloy (Fri Jan 28 2011 - 08:34:28 CST)
• ILS on GPU Cluster - Exceeded MAX_BINOFFSETS for CUDA kernel
  • John Stone (Fri Sep 11 2015 - 11:19:34 CDT)
  • Simon Dürr (Fri Sep 11 2015 - 09:15:12 CDT)
  • Simon Dürr (Wed Sep 02 2015 - 09:42:03 CDT)
  • John Stone (Wed Sep 02 2015 - 10:03:38 CDT)
• ILS tool fails
  • John Stone (Tue Jul 13 2010 - 11:39:50 CDT)
  • Aaron Oakley (Fri Jul 09 2010 - 20:25:38 CDT)
• ILS: clash exclusion distance
  • Simon Dürr (Fri Sep 11 2015 - 12:25:46 CDT)
• ILS: Problems with the alignment
  • Simon Dürr (Mon Sep 21 2015 - 13:19:10 CDT)
  • Simon Dürr (Fri Sep 11 2015 - 15:42:26 CDT)
• Image Flags
  • Sachin Natesh (Thu Jun 30 2016 - 20:36:07 CDT)
• image jumps
  • John Stone (Tue Jun 25 2002 - 15:00:36 CDT)
  • Y U Sasidhar (Sat Jun 22 2002 - 00:03:46 CDT)
• Image render in VMD
  • GAGANJYOT KAUR BAKSHI (Tue Jan 31 2023 - 09:04:48 CST)
  • Josh Vermaas (Tue Jan 31 2023 - 09:02:35 CST)
  • Geist, Norman (Tue Jan 31 2023 - 08:22:44 CST)
  • amin sagar (Tue Jan 31 2023 - 07:58:50 CST)
  • GAGANJYOT KAUR BAKSHI (Tue Jan 31 2023 - 05:31:53 CST)
• Image rendering using pov-ray
  • Dong Xu (Fri Jun 13 2008 - 14:35:45 CDT)
  • John Stone (Fri Jun 13 2008 - 14:48:24 CDT)
  • John Stone (Thu Jun 12 2008 - 22:04:47 CDT)
  • Dong Xu (Thu Jun 12 2008 - 21:31:03 CDT)
  • Axel Kohlmeyer (Mon Jun 09 2008 - 21:34:57 CDT)
  • Axel Kohlmeyer (Mon Jun 09 2008 - 21:30:35 CDT)
  • Dong Xu (Mon Jun 09 2008 - 20:35:55 CDT)
• images for publication
  • Falgun Shah (Wed Mar 04 2009 - 00:20:59 CST)
  • Falgun Shah (Wed Mar 04 2009 - 00:06:27 CST)
  • John Stone (Wed Mar 04 2009 - 00:11:11 CST)
  • John Stone (Tue Mar 03 2009 - 23:49:42 CST)
  • John Stone (Tue Mar 03 2009 - 14:51:18 CST)
  • Falgun Shah (Sun Mar 01 2009 - 15:23:12 CST)
• IMD - remove forces on mouse release
  • jonathan KHAO (Sun Apr 08 2012 - 15:50:44 CDT)
  • Axel Kohlmeyer (Sun Apr 08 2012 - 14:12:19 CDT)
  • jonathan KHAO (Sun Apr 08 2012 - 13:05:45 CDT)
• IMD and AutoIMD bug when releasing forces on residues?
  • William Ray (Mon Oct 22 2012 - 11:15:38 CDT)
  • John Stone (Thu Oct 18 2012 - 10:36:25 CDT)
  • William Ray (Fri Oct 05 2012 - 12:41:42 CDT)
  • William Ray (Mon Oct 01 2012 - 10:09:39 CDT)
  • John Stone (Mon Oct 01 2012 - 10:23:45 CDT)
  • John Stone (Sun Sep 30 2012 - 16:50:11 CDT)
  • William Ray (Thu Sep 27 2012 - 15:13:03 CDT)
  • William Ray (Thu Sep 27 2012 - 14:21:31 CDT)
  • William Ray (Thu Sep 27 2012 - 13:29:49 CDT)
  • William Ray (Thu Sep 27 2012 - 13:09:55 CDT)
  • William Ray (Thu Sep 27 2012 - 10:51:44 CDT)
  • John Stone (Thu Sep 27 2012 - 10:15:08 CDT)
  • William Ray (Thu Sep 27 2012 - 09:57:52 CDT)
• IMD in VMD
  • John Stone (Wed Dec 30 2009 - 12:39:10 CST)
  • John Stone (Wed Dec 30 2009 - 12:55:28 CST)
  • Axel Kohlmeyer (Wed Dec 30 2009 - 00:58:00 CST)
  • Lixia Jin Day (Tue Dec 29 2009 - 17:42:57 CST)
• IMD interface code and endianness
  • John Stone (Fri Sep 12 2003 - 14:10:51 CDT)
  • Marc Baaden (Fri May 30 2003 - 08:39:14 CDT)
  • John Stone (Wed May 28 2003 - 14:36:42 CDT)
  • Marc Baaden (Wed May 28 2003 - 14:21:19 CDT)
  • John Stone (Wed May 28 2003 - 13:55:17 CDT)
  • Marc Baaden (Wed May 28 2003 - 13:36:18 CDT)
• IMD interface for VASP
  • Axel Kohlmeyer (Mon Jul 20 2009 - 19:03:45 CDT)
  • Michael Robbert (Mon Jul 20 2009 - 17:54:36 CDT)
• IMD per TCL
  • John Stone (Fri Jun 20 2008 - 00:15:33 CDT)
  • Axel Kohlmeyer (Tue May 27 2008 - 04:39:51 CDT)
  • Stephan Frickenhaus (Tue May 27 2008 - 02:06:34 CDT)
• IMD Plugin Errors
  • John Stone (Tue Sep 28 2004 - 15:01:04 CDT)
  • Shirley Hui (Sat Feb 21 2004 - 21:18:12 CST)
• IMD question
  • John Stone (Tue Jun 21 2005 - 15:48:42 CDT)
  • wmsmith (Mon Jun 20 2005 - 13:38:18 CDT)
• IMD selections
  • Thomas C. Bishop (Mon Jul 16 2012 - 13:16:32 CDT)
  • John Stone (Mon Jul 16 2012 - 11:44:02 CDT)
  • Axel Kohlmeyer (Mon Jul 16 2012 - 11:25:49 CDT)
  • Thomas C. Bishop (Mon Jul 16 2012 - 10:25:05 CDT)
• IMD with linux VMD client and IBM namd server
  • John Stone (Mon Mar 13 2006 - 10:31:24 CST)
  • Marc Baaden (Mon Mar 13 2006 - 07:29:36 CST)
• IMD with Novint Falcon
  • George Patargias (Fri Jan 18 2013 - 10:08:17 CST)
  • George Patargias (Thu Nov 01 2012 - 03:26:28 CDT)
  • Axel Kohlmeyer (Tue Oct 30 2012 - 08:10:18 CDT)
  • George Patargias (Tue Oct 30 2012 - 05:57:26 CDT)
  • Axel Kohlmeyer (Fri Oct 26 2012 - 08:22:00 CDT)
  • George Patargias (Fri Oct 26 2012 - 06:01:47 CDT)
• IMD with Phantom Omni
  • Mark Cunningham (Sun Mar 14 2010 - 14:45:21 CDT)
• IMD, basic questions...
  • Luis Rosales (Tue Mar 15 2005 - 19:01:29 CST)
• IMDEnergies from python
  • Charles Moad (Mon May 09 2005 - 22:51:43 CDT)
• Immediate PhD Opening Computational Structural Biology Of Membrane Proteins
  • Marawan Hussien (Thu Apr 09 2015 - 19:18:53 CDT)
• Immediate postdoc opening in Bio-molecular simulation, University of Alberta, Canada
  • Marawan Hussien (Wed Jun 19 2019 - 19:16:26 CDT)
• Immediate Postdoctoral Position Opening
  • Marawan Hussien (Thu Apr 09 2015 - 18:10:32 CDT)
• immersadesk
  • John Stone (Fri Jan 18 2002 - 01:27:40 CST)
  • Adrian E. Roitberg (Tue Apr 16 2002 - 09:06:25 CDT)
• implicit casting
  • brad noyes (Fri May 23 2003 - 15:25:40 CDT)
  • John Stone (Fri May 23 2003 - 15:20:51 CDT)
  • brad noyes (Fri May 23 2003 - 15:14:27 CDT)
• Implicit Ligand Sampling
  • Jacopo Sgrignani (Thu Jul 14 2011 - 14:50:21 CDT)
  • Jacopo Sgrignani (Thu Jul 14 2011 - 11:05:37 CDT)
  • Marc Zimmer (Sat Sep 25 2010 - 06:26:24 CDT)
• implicit ligand sampling method
  • Muhammad tariq (Sat Jun 06 2020 - 09:58:00 CDT)
• Implicit Ligand Sampling-molecule rotation issue
  • Jérôme Hénin (Mon Jan 09 2012 - 05:11:19 CST)
  • Aaron Oakley (Sun Jan 08 2012 - 18:30:08 CST)
• Implicit Ligand Sampling: How to get energy along a reaction coordinate?
  • Ebert Maximilian (Wed Sep 23 2015 - 15:09:55 CDT)
  • John Stone (Wed Sep 23 2015 - 14:33:09 CDT)
  • Ebert Maximilian (Wed Sep 23 2015 - 14:11:06 CDT)
• implicit membrane in QwikMD?
  • Armando Jerome de Jesus (Tue Nov 27 2018 - 14:52:08 CST)
  • João Ribeiro (Tue Nov 27 2018 - 11:27:28 CST)
  • Armando Jerome de Jesus (Tue Nov 27 2018 - 09:37:15 CST)
• Implicit Patch for Nucleic Acids?
  • Stefan Franzen (Fri Aug 12 2011 - 13:46:24 CDT)
• implicit solvent
  • Axel Kohlmeyer (Tue Mar 23 2010 - 12:00:04 CDT)
  • Ajasja LjubetiÄ� (Tue Mar 23 2010 - 10:57:54 CDT)
  • politr_at_huji.ac.il (Tue Mar 23 2010 - 09:16:29 CDT)
• Import gromos output file into VMD without format conversion?
  • Axel Kohlmeyer (Thu Sep 22 2005 - 07:32:55 CDT)
  • John Stone (Wed Sep 21 2005 - 14:27:45 CDT)
  • Nathan C. Rockwell (Wed Sep 21 2005 - 14:17:10 CDT)
  • Mauricio Carrillo Tripp (Wed Sep 21 2005 - 12:51:04 CDT)
  • John Stone (Wed Sep 21 2005 - 10:20:02 CDT)
  • Stanley Lan (Wed Sep 21 2005 - 09:37:35 CDT)
• import QM single point calculation
  • Tim Werner (Wed Jun 11 2008 - 04:27:02 CDT)
• import selection in array for script
  • John Stone (Tue Jul 12 2011 - 13:04:43 CDT)
  • KIRTANA S (Fri Jul 08 2011 - 15:36:50 CDT)
  • Axel Kohlmeyer (Fri Jul 08 2011 - 15:04:46 CDT)
  • KIRTANA S (Fri Jul 08 2011 - 14:37:11 CDT)
• import xyz file
  • John Stone (Tue Jan 26 2010 - 20:48:30 CST)
  • Naiyin Yu (Tue Jan 26 2010 - 16:51:04 CST)
• ImportError: cannot import name AtomSel
  • Wim R. Cardoen (Tue Jan 24 2012 - 11:26:23 CST)
  • John Stone (Mon Jan 23 2012 - 16:35:53 CST)
  • Axel Kohlmeyer (Mon Jan 23 2012 - 16:33:29 CST)
  • Wim R. Cardoen (Mon Jan 23 2012 - 15:36:19 CST)
• Importing .str file generated by ParamChem to molefacture in VMD
  • Hazel, Justin (Fri Jul 06 2018 - 09:55:10 CDT)
  • Ushasi Pramanik 1710228 (Fri Jul 06 2018 - 05:43:07 CDT)
• importing deMon2k "molden" files into VMD
  • Axel Kohlmeyer (Sat Dec 19 2015 - 17:48:31 CST)
  • Urquhart, Stephen (Sat Dec 19 2015 - 17:22:27 CST)
• Importing Surface Mesh into VMD?
  • Daniel Brooks (Mon Mar 13 2017 - 16:05:15 CDT)
  • Vermaas, Joshua (Mon Mar 13 2017 - 11:25:21 CDT)
  • Daniel Brooks (Mon Mar 13 2017 - 02:22:18 CDT)
• importing topology file from PRODRG
  • chandrakala gowda (Fri Feb 21 2014 - 10:48:00 CST)
• importing VMD python modules from external interpreterr
  • John Stone (Thu Sep 21 2006 - 05:41:32 CDT)
  • Dr. Seth Olsen (Wed Sep 20 2006 - 01:44:24 CDT)
  • John Stone (Tue Sep 19 2006 - 22:49:20 CDT)
  • Dr. Seth Olsen (Tue Sep 19 2006 - 22:19:02 CDT)
• imposing period boundary conditions in a simulation with a crystal
  • Axel Kohlmeyer (Wed Sep 06 2006 - 09:23:39 CDT)
  • Ana Celia Araujo Vila Verde (Wed Sep 06 2006 - 08:31:59 CDT)
  • Axel Kohlmeyer (Tue Sep 05 2006 - 12:00:19 CDT)
  • Ana Celia Araujo Vila Verde (Tue Sep 05 2006 - 11:13:06 CDT)
• Impressive Glashutte timepieces!
  • Lorena Shipley (Wed Apr 30 2008 - 08:35:35 CDT)
• Improper angle-ffTK, regarding
  • RAHUL SURESH (Thu Oct 05 2017 - 01:23:19 CDT)
  • Mayne, Christopher G (Thu Oct 05 2017 - 01:21:10 CDT)
  • JC Gumbart (Wed Oct 04 2017 - 15:01:47 CDT)
  • JC Gumbart (Tue Oct 03 2017 - 17:21:52 CDT)
  • RAHUL SURESH (Tue Oct 03 2017 - 05:44:49 CDT)
• Improper parameters for CNT
  • Axel Kohlmeyer (Mon Apr 15 2013 - 03:19:26 CDT)
  • Axel Kohlmeyer (Mon Apr 15 2013 - 03:17:05 CDT)
  • francesco oteri (Mon Apr 15 2013 - 01:54:48 CDT)
  • Anurag Sharma (Mon Apr 15 2013 - 01:56:42 CDT)
  • Anurag Sharma (Sun Apr 14 2013 - 18:20:09 CDT)
  • Josh Vermaas (Sun Apr 14 2013 - 17:38:37 CDT)
  • Anurag Sharma (Sun Apr 14 2013 - 16:30:59 CDT)
• Improper terms in topology files processed by psfgen
  • Vermaas, Joshua (Fri Jan 05 2018 - 12:23:30 CST)
  • Peter Freddolino (Fri Jan 05 2018 - 11:56:31 CST)
  • Brian Radak (Fri Jan 05 2018 - 10:40:00 CST)
  • Jadzia Dax (Wed Jan 03 2018 - 03:15:39 CST)
  • Peter Freddolino (Tue Jan 02 2018 - 09:31:43 CST)
  • Jadzia Dax (Tue Jan 02 2018 - 01:29:30 CST)
• impropers dropped when using psfgen
  • Josh Vermaas (Mon Mar 24 2014 - 11:13:55 CDT)
  • Michael F. Harrach (Mon Mar 24 2014 - 03:48:36 CDT)
  • Josh Vermaas (Fri Mar 21 2014 - 14:18:07 CDT)
  • Michael F. Harrach (Fri Mar 21 2014 - 11:36:31 CDT)
• Improve OFF plugin: handle colors
  • John Stone (Wed Dec 07 2011 - 00:56:19 CST)
  • FX (Mon Dec 05 2011 - 07:20:06 CST)
• Improved VMD performance on MacOSX 10.5.2
  • John Stone (Tue Feb 12 2008 - 18:26:09 CST)
  • Christoph Weber (Tue Feb 12 2008 - 16:51:14 CST)
• Improving movie clarity
  • anu chandra (Thu Dec 31 2015 - 15:32:22 CST)
  • Josh Vermaas (Thu Dec 31 2015 - 08:28:32 CST)
  • anu chandra (Thu Dec 31 2015 - 06:34:57 CST)
  • Josh Vermaas (Tue Dec 29 2015 - 19:17:08 CST)
  • anu chandra (Tue Dec 29 2015 - 18:05:58 CST)
• Improving VMD performance on Linux?
  • Olaf Lenz (Mon Oct 20 2008 - 07:37:58 CDT)
  • Olaf Lenz (Mon Oct 20 2008 - 07:57:28 CDT)
  • Leandro Martínez (Mon Oct 20 2008 - 07:22:08 CDT)
  • Benjamin Bouvier (Mon Oct 20 2008 - 06:05:26 CDT)
  • nbabcock_at_qis.ucalgary.ca (Sat Oct 18 2008 - 14:06:35 CDT)
• in search of lipid files
  • Francesco Pietra (Thu Dec 03 2009 - 16:11:43 CST)
• In-Residence Training at the Theoretical & Computational Biophysics Group, July 16-27, 2012
  • TCBG Workshop (Mon Apr 30 2012 - 17:02:14 CDT)
• Include HETATM into *.psf file
  • Davit Hakobyan (Thu May 06 2004 - 01:05:11 CDT)
  • Tim Isgro (Wed May 05 2004 - 17:24:12 CDT)
  • Davit Hakobyan (Mon May 03 2004 - 14:04:32 CDT)
• Including two parameters for protein-ligand simulation
  • Nikhil Maroli (Wed Oct 28 2015 - 01:52:30 CDT)
• incompatibility between VMD & NAMD for reading Amber crd files
  • David A. Case (Wed Jun 23 2004 - 12:39:42 CDT)
  • Kamp, Marc vander (Tue Jun 22 2004 - 04:20:16 CDT)
  • John Stone (Mon Jun 21 2004 - 14:53:13 CDT)
  • John Stone (Mon Jun 21 2004 - 09:58:31 CDT)
  • Kamp, Marc vander (Mon Jun 21 2004 - 07:33:11 CDT)
• Incompatible cubefiles (G09revD.01 cubegen)
  • Ari Turpeinen (Tue Sep 24 2013 - 06:57:21 CDT)
  • Axel Kohlmeyer (Tue Sep 24 2013 - 07:00:35 CDT)
  • Axel Kohlmeyer (Tue Sep 24 2013 - 04:59:00 CDT)
  • Ari Turpeinen (Tue Sep 24 2013 - 03:23:51 CDT)
  • Axel Kohlmeyer (Tue Sep 24 2013 - 02:37:55 CDT)
  • Ari Turpeinen (Tue Sep 24 2013 - 01:20:18 CDT)
• Incomplete Display
  • John Stone (Mon Jun 05 2006 - 17:02:21 CDT)
  • Leonardo G. Trabuco (Mon Jun 05 2006 - 16:14:27 CDT)
  • John Stone (Mon Jun 05 2006 - 10:30:08 CDT)
  • Vineet Pande (Sun Jun 04 2006 - 09:53:18 CDT)
  • Vineet Pande (Sat Jun 03 2006 - 10:58:02 CDT)
  • Leonardo G. Trabuco (Fri Jun 02 2006 - 13:24:25 CDT)
  • Vineet Pande (Fri Jun 02 2006 - 09:17:51 CDT)
• Inconsistencies in NAMD simulations
  • Chandra Ramananjara (Tue Jan 22 2008 - 02:49:53 CST)
• Inconsistent atom count
  • John Stone (Tue Jul 05 2016 - 12:54:26 CDT)
  • Laura Joana (Tue Jul 05 2016 - 12:04:44 CDT)
• Inconsistent frame output with TMD simulations
  • Steven Cohen (Wed Jul 27 2016 - 07:46:38 CDT)
  • John Stone (Thu Jul 21 2016 - 17:05:49 CDT)
  • Steven Cohen (Thu Jul 14 2016 - 15:38:55 CDT)
• incorrect bonds
  • Statics Eng (Tue Feb 14 2017 - 06:01:12 CST)
• Incorrect charge in VMD from PSF?
  • Udaya Dahal (Mon Feb 25 2019 - 16:28:18 CST)
  • Vermaas, Joshua (Mon Feb 25 2019 - 15:44:31 CST)
  • Udaya Dahal (Mon Feb 25 2019 - 11:57:47 CST)
• incorrect number of coordinates in .dcd file error
  • Ajasja LjubetiÄ� (Tue Feb 21 2012 - 02:17:37 CST)
  • abinayar_at_imsc.res.in (Tue Feb 21 2012 - 00:53:08 CST)
• Incorrect results from 'measure dipole -masscenter'
  • Stéphane Pezennec (Thu Feb 24 2011 - 03:05:22 CST)
  • John Stone (Wed Feb 23 2011 - 13:55:38 CST)
  • Stéphane Pezennec (Wed Feb 23 2011 - 10:30:36 CST)
  • Axel Kohlmeyer (Wed Feb 23 2011 - 09:12:37 CST)
  • Stéphane Pezennec (Wed Feb 23 2011 - 07:24:02 CST)
• incorrect tube, trace and ribbon drawings
  • Justin Gullingsrud (Mon Aug 21 2000 - 13:32:52 CDT)
  • Lars Burgdorf (Mon Aug 21 2000 - 08:15:42 CDT)
• Incorrect visualization of system after catdcd
  • Peter Freddolino (Sat Dec 12 2020 - 20:03:27 CST)
  • Kandarp Sojitra (Sat Dec 12 2020 - 06:36:45 CST)
• increase light under depth cueing
  • Cojocaru,Vlad (Sun Apr 29 2007 - 15:12:54 CDT)
  • Axel Kohlmeyer (Sun Apr 29 2007 - 12:43:19 CDT)
  • Olaf Lenz (Sun Apr 29 2007 - 03:31:34 CDT)
  • Axel Kohlmeyer (Sat Apr 28 2007 - 17:45:36 CDT)
  • Vlad Cojocaru (Sat Apr 28 2007 - 17:46:59 CDT)
• increase size membrane
  • John Stone (Tue Nov 08 2005 - 15:13:33 CST)
  • andrea spitaleri (Fri Nov 04 2005 - 02:58:43 CST)
• increase the resolution of images
  • Pawel Kedzierski (Wed Sep 30 2020 - 06:27:03 CDT)
  • omid gh (Wed Sep 30 2020 - 04:46:21 CDT)
  • Fernando Vallejos-Burgos (Tue Sep 29 2020 - 18:06:33 CDT)
  • omid gh (Tue Sep 29 2020 - 13:34:31 CDT)
• Increasing cores in QwiKMD
  • Joao Ribeiro (Thu Mar 12 2020 - 15:28:23 CDT)
  • Naeem Mahmood Ashraf (Sun Mar 08 2020 - 06:22:04 CDT)
• Increasing MAXATOMBONDS?
  • John Stone (Mon Jan 21 2008 - 12:11:51 CST)
  • Oliver Beckstein (Mon Jan 21 2008 - 10:42:05 CST)
  • John Stone (Wed Jan 09 2008 - 01:22:13 CST)
  • Oliver Beckstein (Thu Dec 20 2007 - 15:50:10 CST)
  • John Stone (Wed Dec 19 2007 - 20:59:02 CST)
  • Oliver Beckstein (Tue Dec 18 2007 - 16:05:02 CST)
  • John Stone (Tue Dec 18 2007 - 12:56:55 CST)
  • Oliver Beckstein (Mon Dec 17 2007 - 13:37:42 CST)
• Increasing number of digits
  • Martin, Erik W (Fri Sep 06 2013 - 19:32:42 CDT)
  • John Stone (Fri Sep 06 2013 - 17:24:19 CDT)
  • Dawid das (Tue Sep 03 2013 - 09:31:00 CDT)
• Increasing the number of bonds per atom
  • Wasim Abdul (Fri Jul 12 2019 - 04:38:31 CDT)
  • John Stone (Wed Jul 10 2019 - 15:54:03 CDT)
  • Wasim Abdul (Wed Jul 03 2019 - 01:09:12 CDT)
  • Wasim Abdul (Fri Jun 28 2019 - 13:47:04 CDT)
  • John Stone (Fri Jun 28 2019 - 11:20:52 CDT)
  • Vermaas, Joshua (Fri Jun 28 2019 - 08:13:20 CDT)
  • Wasim Abdul (Fri Jun 28 2019 - 01:42:49 CDT)
  • Wasim Abdul (Thu Jun 27 2019 - 09:10:46 CDT)
  • John Stone (Thu Jun 27 2019 - 09:09:23 CDT)
  • Axel Kohlmeyer (Thu Jun 27 2019 - 07:31:22 CDT)
  • Wasim Abdul (Thu Jun 27 2019 - 06:54:17 CDT)
• Increasing use of RAM even if I put unset/delete for selections! Due to use of arrays?
  • John Stone (Tue Aug 14 2007 - 12:14:38 CDT)
  • Philipp Schön (Tue Aug 14 2007 - 05:28:13 CDT)
• indented atomselect variables
  • John Stone (Mon Feb 05 2007 - 14:45:44 CST)
  • namd vmd (Mon Feb 05 2007 - 14:30:48 CST)
• indentified particular water molecule
  • Sangita Kachhap (Thu May 19 2011 - 07:24:03 CDT)
• independent stereo display
  • Axel Kohlmeyer (Thu Oct 23 2008 - 14:15:13 CDT)
  • Petrica GASCA (Thu Oct 23 2008 - 11:39:07 CDT)
• index
  • Viswanadham Sridhara (Thu Nov 03 2005 - 16:11:54 CST)
  • Viswanadham Sridhara (Thu Sep 08 2005 - 10:59:27 CDT)
  • John Stone (Thu Sep 08 2005 - 10:54:50 CDT)
  • John Stone (Thu Sep 08 2005 - 10:39:34 CDT)
  • VISWANADHA SRIDHARA (Thu Sep 08 2005 - 10:29:54 CDT)
  • Sanjeev B.S. (Fri Aug 09 2002 - 02:28:45 CDT)
• Index extractor Python Code
  • Smith, Harper (Wed Apr 03 2024 - 20:34:25 CDT)
  • Sam Fredrick (Wed Apr 03 2024 - 19:47:55 CDT)
• IndexError in ied
  • Kateryna Miroshnychenko (Tue Jul 12 2005 - 08:22:39 CDT)
  • Kateryna Miroshnychenko (Thu Jul 07 2005 - 02:23:06 CDT)
  • John Stone (Wed Jul 06 2005 - 12:46:23 CDT)
  • Kateryna Miroshnychenko (Wed Jul 06 2005 - 11:27:11 CDT)
• indexing water molecules
  • John Stone (Thu Nov 03 2005 - 16:43:59 CST)
  • VISWANADHA SRIDHARA (Thu Nov 03 2005 - 16:21:15 CST)
• Individual atoms trajectory
  • John Stone (Fri May 16 2008 - 01:33:59 CDT)
  • Alexandre A. Vakhrouchev (Fri May 16 2008 - 02:08:59 CDT)
  • Alexandre A. Vakhrouchev (Fri May 16 2008 - 01:08:22 CDT)
  • John Stone (Thu May 15 2008 - 23:42:40 CDT)
  • Alexandre A. Vakhrouchev (Wed May 14 2008 - 00:34:38 CDT)
• Individual components of RMSD?
  • Axel Kohlmeyer (Thu Mar 08 2012 - 13:07:49 CST)
  • John Stone (Thu Mar 08 2012 - 12:15:47 CST)
  • Andrew Jewett (Tue Mar 06 2012 - 20:31:31 CST)
  • patrick wintrode (Tue Mar 06 2012 - 11:36:44 CST)
• Inexpensive Louis Vuitton bags
  • Buford Granger (Thu Apr 24 2008 - 09:03:05 CDT)
  • Royce Rosa (Sat Apr 12 2008 - 18:57:58 CDT)
• info for computational chemistry awards, please forward
  • Carlos Simmerling (Fri Feb 20 2009 - 10:22:27 CST)
• Info regarding residue based CG simulation
  • anshudx_at_indiatimes.com (Thu May 15 2008 - 13:04:11 CDT)
• information regarding tcl script for cell volume changing with each frame
  • Axel Kohlmeyer (Sat Mar 03 2012 - 17:25:43 CST)
  • siladitya mukherjee (Sat Mar 03 2012 - 16:18:07 CST)
  • Axel Kohlmeyer (Sat Mar 03 2012 - 14:45:14 CST)
  • siladitya mukherjee (Sat Mar 03 2012 - 13:50:09 CST)
• init.tcl startup problem with vmd 1.8.3 (but 1.8.2 works)
  • John Stone (Wed Mar 09 2005 - 13:22:59 CST)
  • Sabuj Pattanayek (Wed Mar 09 2005 - 13:12:33 CST)
  • John Stone (Wed Mar 09 2005 - 13:00:15 CST)
  • Sabuj Pattanayek (Wed Mar 09 2005 - 12:53:36 CST)
  • John Stone (Wed Mar 09 2005 - 12:45:19 CST)
  • Sabuj Pattanayek (Wed Mar 09 2005 - 12:41:13 CST)
• Initial configuration reorientation
  • John Stone (Wed Aug 24 2011 - 12:43:52 CDT)
  • Anna (Wed Aug 24 2011 - 11:48:38 CDT)
• Initial configurations / topology for LAMMPS
  • molecular dynamics (Thu Jul 14 2011 - 15:22:41 CDT)
• initial run by vmd on loading a trajectory
  • Dr. Y. U. Sasidhar (Thu Jan 30 2003 - 05:32:53 CST)
  • Justin Gullingsrud (Wed Jan 29 2003 - 09:07:29 CST)
  • Mikko Huhtala (Wed Jan 29 2003 - 02:28:56 CST)
  • Dr. Y. U. Sasidhar (Tue Jan 28 2003 - 22:58:17 CST)
• INITIALIZATION ERROR --> OSPRay not yet initialized - WIN64, version 1.9.4a53
  • Chris Taylor (Mon Sep 26 2022 - 18:31:01 CDT)
• inorganic builder
  • Barbault Florent (Wed Jun 07 2017 - 03:31:16 CDT)
• Inorganic builder in no display mode - Reg
  • Mani Kandan (Tue Jul 03 2018 - 13:17:22 CDT)
  • John Stone (Tue Jul 03 2018 - 11:41:10 CDT)
  • Mani Kandan (Wed Jun 27 2018 - 10:32:00 CDT)
• Inorganic Builder Plugin
  • Robert Brunner (Thu Aug 21 2008 - 08:31:19 CDT)
  • John Stone (Wed Aug 20 2008 - 23:01:45 CDT)
  • max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
  • Robert Brunner (Wed Jul 09 2008 - 10:38:27 CDT)
  • Renata KWIECIEN (Wed Jul 09 2008 - 02:56:17 CDT)
• input file
  • John Stone (Wed Aug 18 2010 - 15:00:41 CDT)
  • Agnieszka Sobkiewicz (Mon Aug 09 2010 - 06:41:18 CDT)
• input file for PO3
  • lily jin (Tue Mar 28 2006 - 11:02:34 CST)
• Input File Format
  • Axel Kohlmeyer (Wed Oct 21 2009 - 14:52:05 CDT)
  • Arian Arian (Wed Oct 21 2009 - 14:03:01 CDT)
• Input selection as xyz co-ordinates
  • John Stone (Wed Feb 22 2012 - 22:43:52 CST)
  • Ban Arn (Wed Feb 22 2012 - 09:09:33 CST)
• Inquiry concerning the plugin "Inorganic builder"
  • Axel Kohlmeyer (Mon Jun 23 2008 - 10:11:04 CDT)
  • Anneta Tzampazi (Mon Jun 23 2008 - 05:23:46 CDT)
• Insall Problem VMD Linux 1.8.6 Part II!
  • John Stone (Sun Apr 06 2008 - 23:48:11 CDT)
  • Axel Kohlmeyer (Sun Apr 06 2008 - 23:50:58 CDT)
  • Peter Freddolino (Sun Apr 06 2008 - 23:31:25 CDT)
  • John Stone (Sun Apr 06 2008 - 23:23:31 CDT)
  • Peter Hains (Sun Apr 06 2008 - 23:07:55 CDT)
• insert a protein into a membrane
  • Leonardo Trabuco (Tue Jul 21 2009 - 21:17:29 CDT)
  • Lixia Jin Day (Tue Jul 21 2009 - 13:41:21 CDT)
• Inserting amino acids to a protein
  • Ajasja LjubetiÄ� (Fri Aug 06 2010 - 02:40:35 CDT)
  • Gregorio Alanislobato (Thu Aug 05 2010 - 14:24:56 CDT)
• Inserting missing residues
  • Michael Chen (Sat Jun 12 2004 - 16:49:35 CDT)
• inserting protein into membrane
  • John Stone (Fri May 18 2007 - 16:21:10 CDT)
  • baxy (Thu May 17 2007 - 08:39:58 CDT)
• Inspired Internet Business Opportunity!
  • jo333_4_at_lawrence-lca.co.uk (Wed Sep 06 2000 - 13:38:24 CDT)
• install 1.8.3 on RHEL4
  • Axel Kohlmeyer (Fri Mar 18 2005 - 15:45:06 CST)
  • John Stone (Fri Mar 18 2005 - 10:52:52 CST)
  • HuiZhe Li (Fri Mar 18 2005 - 10:38:30 CST)
  • John Stone (Fri Mar 18 2005 - 08:14:00 CST)
  • HuiZhe Li (Fri Mar 18 2005 - 03:00:00 CST)
  • HuiZhe Li (Fri Mar 18 2005 - 02:51:05 CST)
  • Dallas Warren (Thu Mar 17 2005 - 16:16:25 CST)
  • John Stone (Thu Mar 17 2005 - 14:05:45 CST)
  • HuiZhe Li (Thu Mar 17 2005 - 13:23:15 CST)
• Install and Configure Problems
  • Axel Kohlmeyer (Wed Jan 03 2007 - 09:43:38 CST)
  • christopher (Wed Jan 03 2007 - 08:57:14 CST)
• install of new VMD 1.8
  • John Stone (Thu Feb 06 2003 - 17:27:38 CST)
  • Yongmei Wang (Thu Feb 06 2003 - 15:56:44 CST)
• Install of VMD on amazon linux2 NICE DCV server
  • Ben Cossins (Sun Nov 14 2021 - 13:29:37 CST)
  • John Stone (Tue Nov 09 2021 - 16:05:16 CST)
  • Tru Huynh (Sun Nov 07 2021 - 09:13:46 CST)
  • Axel Kohlmeyer (Sat Nov 06 2021 - 11:41:25 CDT)
  • Ben Cossins (Sat Nov 06 2021 - 10:56:34 CDT)
• install on Centos - issues
  • John Stone (Wed Jul 28 2010 - 00:01:41 CDT)
  • Joseph Norris (Fri Jul 23 2010 - 18:48:04 CDT)
• install plugin: problems with vmd_install_extension
  • Axel Kohlmeyer (Fri Apr 10 2009 - 10:13:57 CDT)
  • Axel Kohlmeyer (Fri Apr 10 2009 - 09:10:13 CDT)
  • Steve Massard (Fri Apr 10 2009 - 04:35:45 CDT)
• Install problem VMD Linux 1.8.6
  • Axel Kohlmeyer (Sun Apr 06 2008 - 20:21:11 CDT)
  • John Stone (Sun Apr 06 2008 - 20:15:31 CDT)
  • Peter Hains (Sun Apr 06 2008 - 19:19:15 CDT)
• install the third part plugins
  • sunyeping (Wed Oct 29 2014 - 12:26:59 CDT)
• Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"
  • John Stone (Thu Sep 17 2009 - 21:34:36 CDT)
  • Jim Parker (Thu Sep 17 2009 - 19:33:51 CDT)
• Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"--Solved
  • John Stone (Sun Oct 11 2009 - 22:43:17 CDT)
  • Jim Parker (Sun Oct 11 2009 - 21:31:05 CDT)
• Install VMD from source on Amazon EC2 instance
  • Axel Kohlmeyer (Thu Jan 07 2021 - 17:29:43 CST)
  • Chris Taylor (Thu Jan 07 2021 - 17:25:09 CST)
  • Axel Kohlmeyer (Thu Jan 07 2021 - 17:14:13 CST)
  • Chris Taylor (Thu Jan 07 2021 - 17:08:44 CST)
  • Chris Taylor (Thu Jan 07 2021 - 16:58:04 CST)
  • Axel Kohlmeyer (Thu Jan 07 2021 - 16:58:26 CST)
  • Chris Taylor (Thu Jan 07 2021 - 16:54:18 CST)
  • Axel Kohlmeyer (Thu Jan 07 2021 - 16:48:47 CST)
  • Chris Taylor (Thu Jan 07 2021 - 16:20:21 CST)
  • Chris Taylor (Mon Jan 04 2021 - 18:54:26 CST)
• install VMD IN parallel
  • John Stone (Fri Sep 01 2017 - 14:34:31 CDT)
  • Axel Kohlmeyer (Fri Sep 01 2017 - 14:10:44 CDT)
  • John Stone (Fri Sep 01 2017 - 13:12:19 CDT)
  • Ajasja LjubetiÄ� (Fri Sep 01 2017 - 06:34:59 CDT)
  • Saikat Pal (Fri Sep 01 2017 - 05:59:37 CDT)
• Install VMD on intel i5
  • John Stone (Mon Jul 12 2010 - 11:52:30 CDT)
  • moacyr comar (Wed Jul 07 2010 - 12:00:18 CDT)
• Install VMD on Mandrake Linux
  • huaer_at_myway.com (Wed Apr 06 2005 - 11:06:26 CDT)
  • John Stone (Wed Apr 06 2005 - 10:59:38 CDT)
  • huaer_at_myway.com (Wed Apr 06 2005 - 10:37:34 CDT)
• Install VMD on Window XP
  • John Stone (Fri Oct 29 2004 - 15:34:06 CDT)
  • bybaker_at_itsa.ucsf.edu (Thu Oct 28 2004 - 22:19:46 CDT)
  • bybaker_at_itsa.ucsf.edu (Thu Oct 28 2004 - 22:17:59 CDT)
• Install VMD with goal of enabling Intel OSPray renderer
  • Josh Vermaas (Fri Jan 01 2021 - 13:13:55 CST)
  • Chris Taylor (Fri Jan 01 2021 - 03:59:34 CST)
• Install VMD with plugins to NAMD
  • Jim Parker (Wed Sep 16 2009 - 23:29:11 CDT)
  • John Stone (Wed Sep 16 2009 - 23:02:35 CDT)
  • Jim Parker (Wed Sep 16 2009 - 22:53:24 CDT)
  • John Stone (Wed Sep 16 2009 - 22:04:35 CDT)
  • Jim Parker (Wed Sep 16 2009 - 21:44:31 CDT)
• Install VMD with plugins to NAMD--solved
  • Jim Parker (Thu Sep 17 2009 - 19:10:07 CDT)
• Installation
  • John Stone (Mon Mar 11 2013 - 13:06:50 CDT)
  • tolga.akiner (Fri Mar 08 2013 - 01:11:10 CST)
  • John Stone (Thu Mar 07 2013 - 10:34:17 CST)
  • Tolga Akiner (Thu Mar 07 2013 - 10:17:37 CST)
  • Fernanda S. (Sun Feb 15 2009 - 13:32:20 CST)
  • John Stone (Sun Feb 15 2009 - 12:54:29 CST)
  • Axel Kohlmeyer (Sun Feb 15 2009 - 12:46:34 CST)
  • Fernanda S. (Sun Feb 15 2009 - 08:05:10 CST)
  • John Stone (Sat Feb 14 2009 - 19:37:26 CST)
  • John Stone (Sat Feb 14 2009 - 19:34:29 CST)
  • Fernanda S. (Sat Feb 14 2009 - 17:18:57 CST)
  • John Stone (Sat Feb 14 2009 - 14:32:53 CST)
  • Ramon Crehuet (Fri Feb 13 2009 - 05:08:51 CST)
  • Fernanda S. (Thu Feb 12 2009 - 13:08:19 CST)
  • John Stone (Thu Feb 12 2009 - 13:40:02 CST)
• Installation and running on VMD on Debian Testing System
  • Lorenzo Isella (Wed Oct 03 2007 - 17:50:04 CDT)
  • Axel Kohlmeyer (Wed Oct 03 2007 - 12:42:25 CDT)
  • Dan Wright (Wed Oct 03 2007 - 12:05:38 CDT)
  • Brian Bennion (Wed Oct 03 2007 - 09:51:54 CDT)
  • Lorenzo Isella (Wed Oct 03 2007 - 07:48:08 CDT)
• installation error
  • Urszula Uciechowska (Wed Feb 15 2012 - 03:28:59 CST)
• Installation Error Involving TLC
  • Axel Kohlmeyer (Mon May 28 2007 - 15:36:40 CDT)
  • John Stone (Mon May 28 2007 - 15:35:26 CDT)
  • Claw Isthelaw (Sun May 27 2007 - 22:37:30 CDT)
  • Axel Kohlmeyer (Fri May 25 2007 - 13:23:11 CDT)
  • Peter Freddolino (Fri May 25 2007 - 14:02:32 CDT)
  • Jana Black (Fri May 25 2007 - 13:44:00 CDT)
• Installation error with rlwrap
  • John Stone (Sun Dec 02 2012 - 00:21:25 CST)
  • Matthew Barlow (Tue Nov 13 2012 - 13:41:55 CST)
• installation errors with src/hesstrans_wrap.C
  • AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:16:39 CDT)
  • John Stone (Thu Jul 26 2007 - 16:23:47 CDT)
• Installation Issue
  • Peter Freddolino (Sat Apr 09 2016 - 20:30:43 CDT)
  • Nate Abraham (Fri Apr 08 2016 - 17:01:39 CDT)
  • Hugh Martin (Tue Apr 28 2009 - 09:39:29 CDT)
  • John Stone (Tue Apr 28 2009 - 09:29:20 CDT)
  • Hugh Martin (Tue Apr 28 2009 - 08:09:04 CDT)
• installation of APBS plug-in in VMD 1.8.6
  • Lhee, SangMoon (Thu Oct 25 2007 - 21:14:47 CDT)
  • John Stone (Thu Oct 25 2007 - 21:29:12 CDT)
• installation of VIDEOMACH, how to point to the location of the files
  • Dieter Blaas (Sun Feb 06 2005 - 16:23:26 CST)
  • John Stone (Fri Feb 04 2005 - 14:31:15 CST)
  • Chang, Christopher (Fri Feb 04 2005 - 13:49:17 CST)
  • Dieter Blaas (Fri Feb 04 2005 - 10:22:34 CST)
  • John Stone (Fri Feb 04 2005 - 09:57:09 CST)
  • Dieter Blaas (Fri Feb 04 2005 - 04:37:07 CST)
• installation of vmd 1.8.3
  • Dmitry Osolodkin (Mon Jun 06 2005 - 05:57:34 CDT)
  • John Stone (Fri Jun 03 2005 - 14:02:11 CDT)
  • Dmitry Osolodkin (Fri Jun 03 2005 - 11:49:21 CDT)
• Installation of VMD on Mandriva Linux 2006
  • John Stone (Sat Aug 12 2006 - 13:34:42 CDT)
  • Wei Liu (Sat Aug 12 2006 - 18:52:07 CDT)
  • John Stone (Sat Aug 12 2006 - 10:40:12 CDT)
  • Wei Liu (Sat Aug 12 2006 - 13:23:58 CDT)
• Installation of VMD topotools
  • Axel Kohlmeyer (Tue Feb 11 2014 - 13:05:06 CST)
  • Jeeno Jose (Tue Feb 11 2014 - 11:22:07 CST)
• Installation of VMD-1.8.4b11 binary + IED-2.02 on RH9
  • Martinek Tamas (Tue Feb 14 2006 - 08:58:15 CST)
• installation on suse linux 10.3
  • John Stone (Fri Jan 04 2008 - 12:39:02 CST)
  • s lal badshah (Wed Dec 26 2007 - 23:28:27 CST)
• Installation on vmd-1.8 on mandrake10
  • Priti Hansia (Sat Aug 28 2004 - 02:26:36 CDT)
  • John Stone (Fri Aug 27 2004 - 10:13:41 CDT)
  • Brian Bennion (Fri Aug 27 2004 - 10:06:03 CDT)
  • John Stone (Fri Aug 27 2004 - 09:28:48 CDT)
  • Priti Hansia (Thu Aug 26 2004 - 23:06:11 CDT)
  • John Stone (Thu Aug 26 2004 - 14:09:52 CDT)
  • Priti Hansia (Thu Aug 26 2004 - 10:47:22 CDT)
• Installation Problem
  • Vinícius Aguiar (Tue Aug 27 2013 - 15:25:15 CDT)
  • John Stone (Wed Dec 30 2009 - 13:18:54 CST)
  • John Stone (Wed Dec 30 2009 - 12:53:37 CST)
  • Axel Kohlmeyer (Wed Dec 23 2009 - 14:30:56 CST)
  • Jin Wen (Wed Dec 23 2009 - 14:13:05 CST)
  • Axel Kohlmeyer (Wed Dec 23 2009 - 02:14:47 CST)
  • Ale Gomez (Tue Dec 22 2009 - 20:54:29 CST)
  • Jin Wen (Tue Dec 22 2009 - 17:46:43 CST)
  • Esther Brugger (Wed Nov 01 2006 - 08:59:39 CST)
  • John Stone (Tue Oct 31 2006 - 19:49:04 CST)
  • Axel Kohlmeyer (Tue Oct 31 2006 - 18:32:13 CST)
  • Esther Brugger (Tue Oct 31 2006 - 17:59:07 CST)
  • John Stone (Tue Nov 04 2003 - 10:47:44 CST)
  • Brian Bennion (Tue Nov 04 2003 - 10:16:20 CST)
  • Laura De Luca (Tue Nov 04 2003 - 04:59:38 CST)
• Installation problem -Solvate
  • Axel Kohlmeyer (Wed Jun 29 2011 - 05:25:15 CDT)
  • mohan maruthi sena (Tue Jun 28 2011 - 23:06:58 CDT)
• Installation problem on MacOS Monterey
  • Suman Chakrabarty (Sun Sep 11 2022 - 22:19:30 CDT)
  • FX (Sun Sep 11 2022 - 14:35:32 CDT)
  • Suman Chakrabarty (Sun Sep 11 2022 - 12:16:22 CDT)
• installation problem on solaris 9
  • John Stone (Tue Jan 03 2006 - 10:31:44 CST)
  • Axel Kohlmeyer (Sat Dec 31 2005 - 09:42:53 CST)
  • deepti sethi (Sat Dec 31 2005 - 03:57:55 CST)
• installation problem vmd 1.8.6 on fedora 3
  • Axel Kohlmeyer (Sat Feb 09 2008 - 07:57:27 CST)
  • Bertrand P. S. Russell (Sat Feb 09 2008 - 05:22:24 CST)
  • John Stone (Fri Feb 08 2008 - 11:27:28 CST)
  • kinshuk_at_chem.iitb.ac.in (Fri Feb 08 2008 - 00:15:50 CST)
• Installation problem with VMD, Multiseq, and BLAST
  • David Guertin (Thu Feb 03 2011 - 16:00:11 CST)
  • John Stone (Thu Feb 03 2011 - 16:10:24 CST)
  • Kirby Vandivort (Tue Feb 01 2011 - 14:19:55 CST)
  • David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
  • Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
  • David Guertin (Tue Feb 01 2011 - 10:49:24 CST)
  • David Guertin (Tue Feb 01 2011 - 10:15:48 CST)
• Installation problem.
  • John Stone (Mon Dec 05 2005 - 14:07:23 CST)
  • Taeho Kim (Sun Dec 04 2005 - 22:31:24 CST)
• installation problem: InstallShield
  • John Stone (Tue May 23 2006 - 14:39:44 CDT)
  • ganderle_at_optonline.net (Tue May 23 2006 - 14:26:50 CDT)
• Installation problems on openSUSE 10.3
  • Lawrence Wickert (Sat Nov 15 2008 - 20:22:44 CST)
• installation problems with Redhat 9
  • james tomomi macdonald (Wed Apr 23 2003 - 13:53:11 CDT)
  • John Stone (Wed Apr 23 2003 - 13:27:57 CDT)
  • james tomomi macdonald (Wed Apr 23 2003 - 13:15:22 CDT)
• Installation problems with VMD 1.9
  • Paul Anderson (Fri Nov 18 2011 - 12:51:34 CST)
  • John Stone (Fri Nov 18 2011 - 11:24:03 CST)
  • PaulW (Thu Nov 17 2011 - 07:17:44 CST)
• installation trouble
  • John Stone (Tue Jun 07 2011 - 15:58:43 CDT)
  • Michael Zimmermann (Fri Jun 03 2011 - 14:25:31 CDT)
  • John Stone (Fri Jun 03 2011 - 09:54:39 CDT)
  • Michael Zimmermann (Fri Jun 03 2011 - 09:38:46 CDT)
  • John Stone (Thu Jun 02 2011 - 23:11:53 CDT)
  • Michael Zimmermann (Thu Jun 02 2011 - 23:00:40 CDT)
• Installation/Upgrade Error
  • Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 16:48:08 CDT)
  • John Stone (Wed Apr 20 2011 - 16:05:38 CDT)
  • Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:57:49 CDT)
• installed plugin won't show up next time
  • accomp lin (Fri Apr 24 2009 - 04:59:22 CDT)
  • Axel Kohlmeyer (Thu Apr 23 2009 - 08:45:51 CDT)
  • accomp lin (Thu Apr 23 2009 - 06:58:38 CDT)
• installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found
  • Axel Kohlmeyer (Wed Nov 14 2007 - 20:34:06 CST)
  • James.Beavis_at_csiro.au (Wed Nov 14 2007 - 19:28:02 CST)
  • Axel Kohlmeyer (Tue Nov 13 2007 - 23:50:04 CST)
  • James.Beavis_at_csiro.au (Tue Nov 13 2007 - 21:47:43 CST)
• Installer problem
  • John Stone (Sat Aug 21 2004 - 12:20:36 CDT)
  • Peter Freddolino (Sat Aug 21 2004 - 09:55:02 CDT)
• installing and running VMD on Windows 64-bit
  • John Stone (Fri Nov 11 2011 - 09:32:51 CST)
  • Rabab Toubar (Thu Nov 10 2011 - 15:08:05 CST)
  • Dennis N Bromley (Thu Nov 10 2011 - 12:12:43 CST)
  • John Stone (Thu Nov 10 2011 - 10:05:29 CST)
  • Rabab Toubar (Thu Nov 10 2011 - 09:17:54 CST)
• Installing CATDCD on a Mac
  • John Stone (Fri Oct 28 2011 - 16:21:43 CDT)
  • Michael LeVine (Fri Oct 28 2011 - 14:55:14 CDT)
• installing IED on an sgi
  • Denise Teotico (Tue Jan 03 2006 - 17:35:07 CST)
• installing IED on vmd on windows
  • John Stone (Tue Jan 03 2006 - 10:25:13 CST)
  • Denise G Teotico (Tue Jan 03 2006 - 10:06:51 CST)
• installing MSMS on OS X 10.4.9 (Intel)
  • Ralph Jimenez (Thu May 10 2007 - 20:38:00 CDT)
  • Morizono, Hiroki (Wed May 09 2007 - 08:56:52 CDT)
  • Ralph Jimenez (Tue May 08 2007 - 22:38:01 CDT)
  • Dan Wright (Tue May 08 2007 - 16:58:43 CDT)
  • John Stone (Tue May 08 2007 - 14:20:52 CDT)
  • Ralph Jimenez (Tue May 08 2007 - 14:15:54 CDT)
  • John Stone (Tue May 08 2007 - 13:44:43 CDT)
  • Ralph Jimenez (Tue May 08 2007 - 12:12:33 CDT)
  • John Stone (Mon May 07 2007 - 21:44:39 CDT)
  • Ralph Jimenez (Mon May 07 2007 - 21:37:38 CDT)
• Installing Multiseq updates
  • Jeremias Corradi (Tue Sep 22 2009 - 14:24:43 CDT)
  • Jeremias Corradi (Sat Sep 19 2009 - 11:10:11 CDT)
  • Kirby Vandivort (Thu Sep 17 2009 - 11:54:44 CDT)
  • Kirby Vandivort (Thu Sep 17 2009 - 10:44:07 CDT)
  • Jeremias Corradi (Thu Sep 17 2009 - 08:42:51 CDT)
• installing netpbm
  • John Stone (Sat Nov 23 2013 - 00:05:51 CST)
  • Tom Haxton (Wed Nov 06 2013 - 16:34:18 CST)
• installing problem python 2.2.2 for ied on amd64
  • John Stone (Thu Feb 02 2006 - 17:51:13 CST)
  • Florian Haberl (Thu Feb 02 2006 - 08:50:36 CST)
• Installing VMD
  • Joseph Bylund (Tue Mar 16 2010 - 13:22:27 CDT)
  • John Stone (Tue Mar 16 2010 - 12:55:29 CDT)
  • Salvador H-V (Tue Mar 16 2010 - 12:26:08 CDT)
• Installing VMD 1.8.5 pon ubuntu linux
  • Ran Friedman (Tue Dec 05 2006 - 09:32:07 CST)
  • John Stone (Mon Dec 04 2006 - 15:33:19 CST)
  • Ran Friedman (Mon Dec 04 2006 - 03:24:43 CST)
  • John Stone (Fri Dec 01 2006 - 10:41:00 CST)
  • Ran Friedman (Fri Dec 01 2006 - 07:04:02 CST)
• Installing VMD 1.8.5 pon ubuntu linux]
  • Ran Friedman (Mon Dec 04 2006 - 12:58:06 CST)
• Installing VMD 1.8.6
  • John Stone (Tue Jun 05 2007 - 10:31:11 CDT)
  • Francesco Pietra (Tue Jun 05 2007 - 01:16:14 CDT)
  • John Stone (Mon Jun 04 2007 - 16:45:08 CDT)
  • Francesco Pietra (Mon Jun 04 2007 - 16:14:29 CDT)
  • John Stone (Mon Jun 04 2007 - 13:09:42 CDT)
  • Axel Kohlmeyer (Mon Jun 04 2007 - 08:03:30 CDT)
  • Olaf Lenz (Mon Jun 04 2007 - 08:54:21 CDT)
  • Philipp Schoen1 (Mon Jun 04 2007 - 07:54:24 CDT)
• Installing VMD 1.8.7 on i686/SL5
  • John Stone (Wed Mar 02 2011 - 10:02:46 CST)
  • David Huggins (Wed Mar 02 2011 - 09:41:34 CST)
  • Olaf Lenz (Wed Mar 02 2011 - 08:31:01 CST)
  • David Huggins (Wed Mar 02 2011 - 07:38:14 CST)
• Installing VMD 1.9.3 on Linux - Missing Console
  • Dallas Warren (Tue Dec 17 2019 - 16:50:34 CST)
  • Travis Meyer (Tue Dec 17 2019 - 15:25:27 CST)
• Installing VMD on a PC
  • John Stone (Thu Jan 25 2007 - 01:03:19 CST)
  • Axel Kohlmeyer (Wed Jan 24 2007 - 19:49:17 CST)
  • Trinh Vo (Wed Jan 24 2007 - 18:58:06 CST)
• Installing VMD on Debian Linux
  • Cun Zhang (Tue Oct 25 2011 - 03:53:49 CDT)
  • Axel Kohlmeyer (Fri Oct 14 2011 - 07:47:38 CDT)
  • James Starlight (Fri Oct 14 2011 - 01:51:01 CDT)
• Installing VMD on Fedora
  • Peter Freddolino (Wed Sep 17 2008 - 07:18:07 CDT)
  • Neelanjana Sengupta (Wed Sep 17 2008 - 03:32:02 CDT)
  • John Stone (Tue Sep 16 2008 - 10:58:40 CDT)
  • Neelanjana Sengupta (Tue Sep 16 2008 - 08:25:54 CDT)
• installing vmd on IBM AIX 5
  • John Stone (Fri Jan 27 2006 - 16:30:02 CST)
  • John Stone (Fri Jan 27 2006 - 16:25:29 CST)
  • John Stone (Fri Jan 27 2006 - 16:13:55 CST)
  • John Stone (Fri Jan 27 2006 - 15:58:53 CST)
  • mrg28_at_drexel.edu (Fri Jan 27 2006 - 15:22:45 CST)
• Installing VMD on MACOSX 10.10.4 Yosemite
  • Abhishek Bagusetty (Fri Aug 07 2015 - 21:21:56 CDT)
  • John Stone (Fri Aug 07 2015 - 21:00:11 CDT)
  • Abhishek Bagusetty (Fri Aug 07 2015 - 09:36:19 CDT)
• Installing VMD store using tkconsole in VMD in Windows 10
  • Madhavan Narayanan (Sat Oct 08 2022 - 11:31:32 CDT)
• Installing VMD to work with MSMS
  • Audrey Salazar (Tue Aug 14 2007 - 13:42:35 CDT)
  • John Stone (Tue Aug 14 2007 - 12:23:16 CDT)
  • Axel Kohlmeyer (Tue Aug 14 2007 - 11:31:49 CDT)
  • Audrey Salazar (Tue Aug 14 2007 - 11:07:38 CDT)
• Installing VMD Windows version on 64-bit Windows Environment
  • John Stone (Thu Dec 14 2006 - 14:41:09 CST)
  • John Stone (Wed Nov 22 2006 - 11:50:36 CST)
  • Peter Freddolino (Wed Nov 22 2006 - 10:52:07 CST)
  • Axel Kohlmeyer (Wed Nov 22 2006 - 09:19:03 CST)
  • Adrian Koh (Tue Nov 21 2006 - 21:30:01 CST)
• Installing VMD with PYTHON support
  • John Stone (Thu Oct 10 2013 - 08:59:07 CDT)
  • Axel Kohlmeyer (Thu Oct 10 2013 - 08:17:40 CDT)
  • A. Gomez-Sicilia (Thu Oct 10 2013 - 08:11:03 CDT)
  • Axel Kohlmeyer (Thu Oct 10 2013 - 08:05:12 CDT)
  • A. Gomez-Sicilia (Thu Oct 10 2013 - 07:09:29 CDT)
• Installing vmd-1.8.7 on LINUXAMD64
  • Axel Kohlmeyer (Tue Dec 21 2010 - 08:49:30 CST)
  • Michael Mwalaba (Tue Dec 21 2010 - 08:01:18 CST)
• Installing VMD-1.9.2 in Ubuntu 16.04-32bit
  • Matic Kisovec (Mon Jul 04 2016 - 06:09:12 CDT)
  • Remya Ann (Mon Jul 04 2016 - 01:39:17 CDT)
• Installing VMFD in kubuntu..............
  • Mustafa Burak Boz (Wed Aug 30 2006 - 11:36:49 CDT)
  • Peter Freddolino (Wed Aug 30 2006 - 11:12:27 CDT)
  • bertrand russell (Wed Aug 30 2006 - 10:59:37 CDT)
• Intel HD Graphics and VMD
  • John Stone (Sun Feb 27 2011 - 23:22:29 CST)
  • Peixi Zhu (Thu Feb 24 2011 - 22:28:40 CST)
• Intel HD3000 versus ATI Mobility Radeon 6310
  • John Stone (Wed Aug 17 2011 - 00:50:43 CDT)
  • Gianluca Interlandi (Wed Aug 17 2011 - 00:09:01 CDT)
• intel_do_flush_locked failed: Cannot allocate memory
  • John Stone (Sat Sep 09 2017 - 15:15:38 CDT)
  • Saikat Pal (Sat Sep 09 2017 - 00:07:35 CDT)
• Interacting H-bond between two dimer
  • Vermaas, Joshua (Sun Feb 12 2017 - 22:13:45 CST)
  • PRITI ROY (Sun Feb 12 2017 - 13:10:36 CST)
  • Chitrak Gupta (Sat Feb 04 2017 - 19:30:12 CST)
  • Chitrak Gupta (Fri Feb 03 2017 - 10:45:02 CST)
  • PRITI ROY (Thu Feb 02 2017 - 23:58:56 CST)
• Interaction Energy
  • Axel Kohlmeyer (Wed Jun 02 2010 - 17:00:48 CDT)
  • ban arn (Wed Jun 02 2010 - 16:17:14 CDT)
  • John Stone (Wed Jun 02 2010 - 12:54:57 CDT)
  • ban arn (Wed Jun 02 2010 - 11:35:57 CDT)
  • John Stone (Wed Jun 02 2010 - 11:02:40 CDT)
  • ban arn (Wed Jun 02 2010 - 07:29:38 CDT)
• Interaction Energy Using Python
  • John Stone (Fri Oct 15 2010 - 13:57:51 CDT)
  • David Huggins (Wed Oct 13 2010 - 08:48:12 CDT)
  • John Stone (Tue Oct 12 2010 - 15:34:49 CDT)
  • David Huggins (Wed Sep 29 2010 - 11:04:25 CDT)
• Interactive Display of Molecular Orbitals
  • John Stone (Mon Nov 03 2014 - 12:35:40 CST)
  • Douglas Houston (Fri Oct 31 2014 - 11:05:24 CDT)
• Interactive MD - 3DSystems Touch
  • Trollmann, Marius (Mon Dec 04 2023 - 12:34:51 CST)
  • John Stone (Fri Dec 01 2023 - 13:33:52 CST)
  • Trollmann, Marius (Wed Nov 29 2023 - 03:23:23 CST)
  • Trollmann, Marius (Tue Nov 28 2023 - 01:44:48 CST)
  • Trollmann, Marius (Mon Nov 27 2023 - 10:24:50 CST)
  • Trollmann, Marius (Sun Nov 26 2023 - 07:19:56 CST)
• Interactive MD and Tcl
  • Stephanie Teich-McGoldrick (Thu Nov 07 2013 - 17:12:41 CST)
  • Axel Kohlmeyer (Thu Nov 07 2013 - 16:34:13 CST)
  • Leonhard Henkes (Thu Nov 07 2013 - 15:37:50 CST)
• Interactive MD driver/controller software no longer in beta
  • Axel Kohlmeyer (Fri Nov 12 2010 - 09:41:59 CST)
• Interactive Optix ray tracing on multiple GPUs?
  • Anders Gabrielsson (Wed Aug 26 2015 - 11:18:18 CDT)
  • John Stone (Wed Aug 26 2015 - 11:10:29 CDT)
  • Anders Gabrielsson (Wed Aug 26 2015 - 10:56:20 CDT)
  • John Stone (Wed Aug 26 2015 - 10:37:03 CDT)
  • Anders Gabrielsson (Wed Aug 26 2015 - 10:19:26 CDT)
  • Anders Gabrielsson (Tue Aug 25 2015 - 09:08:04 CDT)
• Interactive Simulations, ligand size limits....
  • Marc Baaden (Fri Apr 29 2005 - 04:01:27 CDT)
  • John Stone (Thu Apr 28 2005 - 13:05:40 CDT)
  • Brian Bennion (Thu Apr 28 2005 - 12:01:32 CDT)
  • John Stone (Thu Apr 28 2005 - 10:08:17 CDT)
  • Luis Rosales (Wed Apr 27 2005 - 21:29:51 CDT)
  • John Stone (Thu Apr 21 2005 - 16:28:08 CDT)
  • Luis Rosales (Wed Apr 20 2005 - 22:22:10 CDT)
  • Luis Rosales (Wed Apr 20 2005 - 18:19:58 CDT)
  • John Stone (Wed Apr 20 2005 - 16:12:20 CDT)
  • Luis Rosales (Tue Apr 19 2005 - 22:51:52 CDT)
• interatomic distances
  • Justin Gullingsrud (Mon Dec 09 2002 - 14:33:43 CST)
  • Vlad Cojocaru (Mon Dec 09 2002 - 07:59:30 CST)
• Interface Propensity
  • John Stone (Wed Sep 17 2008 - 21:53:13 CDT)
  • bo baker (Wed Sep 17 2008 - 05:56:20 CDT)
• intermediate states of a morph
  • John Stone (Wed Nov 02 2005 - 14:17:44 CST)
  • Yu Chen (Wed Nov 02 2005 - 10:20:24 CST)
• intermolecular salt bridge
  • Chitrak Gupta (Fri May 13 2016 - 09:53:36 CDT)
  • John Stone (Wed May 11 2016 - 23:26:40 CDT)
  • Chitrak Gupta (Thu May 05 2016 - 16:25:20 CDT)
• International opportunity
  • robert (Fri Feb 06 2009 - 11:25:07 CST)
• Interpolation in internal space
  • John Stone (Fri Oct 14 2005 - 15:55:29 CDT)
  • Jerry Parks (Thu Oct 13 2005 - 10:21:32 CDT)
• Interpreting a contact map
  • Ian Stokes-Rees (Fri Aug 13 2010 - 16:11:29 CDT)
  • John Stone (Thu Aug 12 2010 - 16:33:23 CDT)
  • Ian Stokes-Rees (Thu Aug 12 2010 - 16:17:12 CDT)
• Intersurf & MAC OSX 10.3
  • John Stone (Thu Aug 25 2005 - 17:35:11 CDT)
  • Sabuj Pattanayek (Tue Aug 23 2005 - 19:40:30 CDT)
  • John Stone (Tue Aug 23 2005 - 15:45:28 CDT)
  • William A. Shelton (Tue Aug 23 2005 - 15:28:16 CDT)
• Intersurf and interface residues
  • Axel Kohlmeyer (Thu Nov 29 2007 - 04:08:08 CST)
  • Vincent Wolowski (Thu Nov 29 2007 - 03:30:37 CST)
  • John Stone (Tue Nov 27 2007 - 13:53:24 CST)
  • Vincent Wolowski (Tue Nov 27 2007 - 13:34:40 CST)
• intersurf in vmd
  • John Stone (Tue Oct 14 2008 - 16:44:01 CDT)
  • Axel Kohlmeyer (Sat Oct 11 2008 - 18:44:10 CDT)
  • BIN ZHANG (Sat Oct 11 2008 - 14:58:14 CDT)
• Intersurf plugin
  • Nuno R. L. Ferreira (Wed Mar 09 2005 - 13:07:01 CST)
  • Nuno R. L. Ferreira (Wed Mar 09 2005 - 09:32:51 CST)
  • Jérôme Hénin (Wed Mar 09 2005 - 08:21:45 CST)
  • John Stone (Tue Mar 08 2005 - 10:59:25 CST)
  • Jérôme Hénin (Mon Mar 07 2005 - 12:02:11 CST)
  • Nuno R. L. Ferreira (Mon Mar 07 2005 - 07:40:35 CST)
  • John Stone (Sun Mar 06 2005 - 21:35:26 CST)
  • Nuno R. L. Ferreira (Sat Mar 05 2005 - 07:27:53 CST)
• intersurf plugin missing in VMD 1.8.7 ?
  • John Stone (Wed Mar 03 2010 - 11:24:15 CST)
  • Bennion, Brian (Wed Mar 03 2010 - 11:11:49 CST)
• invalid command name "dict"
  • Axel Kohlmeyer (Thu Dec 06 2012 - 02:29:59 CST)
  • mohammad agha (Thu Dec 06 2012 - 01:26:01 CST)
• Invalid command name "His" during Solvation
  • John Stone (Fri Jun 25 2010 - 13:51:18 CDT)
  • Michael LeVine (Thu Jun 17 2010 - 09:10:52 CDT)
• invalid command name "La::mevsvd_br"
  • John Stone (Mon May 21 2018 - 10:05:54 CDT)
  • Ashar Malik (Mon May 21 2018 - 09:50:45 CDT)
  • SHAHEE ISLAM (Mon May 21 2018 - 09:29:04 CDT)
  • Jim Parker (Fri May 18 2018 - 16:34:59 CDT)
  • Vermaas, Joshua (Fri May 18 2018 - 07:19:11 CDT)
  • SHAHEE ISLAM (Fri May 18 2018 - 01:03:50 CDT)
  • SHAHEE ISLAM (Fri May 18 2018 - 00:43:54 CDT)
• invalid command name 'vmdcon'
  • John Stone (Fri Feb 12 2010 - 00:21:01 CST)
  • zubin mehta (Wed Feb 10 2010 - 04:41:01 CST)
• Invalid repid?
  • Ignacio Fernández Galván (Fri Dec 16 2016 - 08:53:42 CST)
  • John Stone (Fri Dec 09 2016 - 14:32:31 CST)
  • Ignacio Fernández Galván (Tue Dec 06 2016 - 11:49:47 CST)
• Inverted measure fit of ring atoms
  • John Stone (Tue Nov 27 2018 - 10:12:23 CST)
  • mish (Tue Nov 27 2018 - 09:25:29 CST)
  • mish (Tue Nov 27 2018 - 08:58:09 CST)
• invisible files in windows
  • Ajasja LjubetiÄ� (Thu Jun 16 2011 - 02:27:34 CDT)
  • Denny Bromley (Wed Jun 15 2011 - 20:41:57 CDT)
  • Michael Zimmermann (Wed Jun 15 2011 - 16:57:39 CDT)
  • Axel Kohlmeyer (Wed Jun 15 2011 - 17:37:36 CDT)
• Invitation to connect on LinkedIn
  • gorka lasso via LinkedIn (Sat Sep 15 2012 - 12:05:12 CDT)
  • Violina Sharma via LinkedIn (Tue Sep 04 2012 - 09:05:40 CDT)
  • Hideya Nakamura via LinkedIn (Wed Aug 31 2011 - 19:22:00 CDT)
  • Iman Salehinia via LinkedIn (Tue Jun 14 2011 - 18:31:13 CDT)
  • Lucas Fernández Seivane via LinkedIn (Fri Jun 03 2011 - 02:30:33 CDT)
  • masoud Kazemi via LinkedIn (Wed Jun 01 2011 - 07:55:20 CDT)
  • Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:26:07 CDT)
  • ram prasad via LinkedIn (Sun Mar 27 2011 - 12:38:16 CDT)
  • Deepti Mishra (Mon Jul 19 2010 - 05:57:43 CDT)
• ion 'channel axis'
  • Adrian Kaats (Wed Mar 28 2007 - 15:55:17 CDT)
• ion bead (residue based CG)
  • Peter Freddolino (Wed Aug 18 2010 - 19:16:17 CDT)
  • John Stone (Wed Aug 18 2010 - 15:06:39 CDT)
  • Demet Akten (Mon Aug 09 2010 - 05:34:26 CDT)
• ion visualization in VMD
  • Pawel Kedzierski (Thu Jan 22 2015 - 02:53:57 CST)
  • JhonY. I. (Wed Jan 21 2015 - 21:47:30 CST)
• ionic radii of sodium and chloride
  • John Stone (Tue Jan 24 2012 - 15:23:04 CST)
  • Cosseddu, Salvatore (Sun Jan 22 2012 - 15:27:30 CST)
  • Zumot, Elia Nabil (Fri Jan 20 2012 - 19:55:53 CST)
  • Axel Kohlmeyer (Fri Jan 20 2012 - 20:17:22 CST)
  • John Stone (Fri Jan 20 2012 - 14:05:58 CST)
  • Alexander Balaeff (Fri Jan 20 2012 - 13:59:55 CST)
  • Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
  • Axel Kohlmeyer (Fri Jan 20 2012 - 11:03:06 CST)
  • Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
  • Zumot, Elia Nabil (Thu Jan 19 2012 - 20:12:38 CST)
• Ionization
  • Axel Kohlmeyer (Wed Dec 21 2011 - 08:25:16 CST)
  • Yu Zhou (Tue Dec 20 2011 - 21:23:41 CST)
• ionize (big, big, big system!)
  • Alessandro Cembran (Mon Feb 12 2007 - 18:57:05 CST)
  • L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 17:49:25 CST)
  • Alessandro Cembran (Mon Feb 12 2007 - 11:37:20 CST)
  • L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 11:19:57 CST)
  • Peter Freddolino (Mon Feb 12 2007 - 11:07:50 CST)
  • L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 10:58:32 CST)
• ionize with VMD a TOP file
  • Axel Kohlmeyer (Fri Aug 01 2008 - 09:28:58 CDT)
  • rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
• Ions conversion from atomic model to coarse grained model
  • ÖÜÎIJý (Wed Nov 10 2010 - 11:41:41 CST)
• iOS support?
  • John Stone (Tue Jul 24 2012 - 10:08:14 CDT)
  • Samuel Schlachter (Tue Jul 24 2012 - 09:59:51 CDT)
• IR Spectra plugin
  • Axel Kohlmeyer (Wed Sep 29 2010 - 12:03:13 CDT)
  • Agarwal, Silvi (Wed Sep 29 2010 - 10:59:59 CDT)
• IR spectral density calculation
  • Axel Kohlmeyer (Sun Jul 22 2018 - 14:26:45 CDT)
  • Aashish Bhatt (Sun Jul 22 2018 - 12:53:34 CDT)
• IR Spectral Density Calculator Plugin
  • Ramin Ekhteiari (Tue Dec 23 2014 - 02:31:01 CST)
• IR Spectral Density Tool
  • Dive, Aniruddha Mukund (Thu Dec 03 2015 - 20:39:11 CST)
• IR Spectroscopy plugin questions
  • Amira Yu (Wed Jun 03 2015 - 20:42:41 CDT)
  • Josh Vermaas (Wed Jun 03 2015 - 18:33:48 CDT)
  • Amira Yu (Wed Jun 03 2015 - 17:39:49 CDT)
• IR Spectrum Units
  • Axel Kohlmeyer (Wed Sep 07 2016 - 09:16:06 CDT)
  • marvin.hoffmann_at_stud.uni-heidelberg.de (Wed Sep 07 2016 - 08:46:59 CDT)
• IRIX6 build from CVS
  • Bram Stolk (Tue Nov 08 2005 - 10:20:10 CST)
  • Dan Wright (Tue Nov 08 2005 - 10:14:45 CST)
  • Axel Kohlmeyer (Tue Nov 08 2005 - 07:01:51 CST)
  • Bram Stolk (Tue Nov 08 2005 - 03:28:25 CST)
• is ! RI-MP2 6-31G* TightSCF opt autoaux rijcosx compatibile with ffTK CHARMM INQUIRY
  • Joel Subach (Sat May 11 2024 - 10:55:20 CDT)
  • Joel Subach (Sat Apr 27 2024 - 02:03:24 CDT)
• Is a PDB file hiding something ???
  • Ashar Malik (Sat Jan 17 2015 - 21:14:19 CST)
  • Josh Vermaas (Sat Jan 17 2015 - 09:18:02 CST)
  • Axel Kohlmeyer (Sat Jan 17 2015 - 08:39:19 CST)
  • Michail Palaiokostas Avramidis (Sat Jan 17 2015 - 05:57:07 CST)
  • Ashar Malik (Sat Jan 17 2015 - 05:01:53 CST)
  • Ashar Malik (Sat Jan 17 2015 - 00:27:13 CST)
• Is catdcd running on Windows?
  • John Stone (Wed Oct 17 2007 - 21:15:39 CDT)
  • Axel Kohlmeyer (Wed Oct 17 2007 - 06:34:45 CDT)
  • Philipp Schön (Wed Oct 17 2007 - 03:45:54 CDT)
• Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK
  • Mayne, Christopher G (Wed Apr 17 2013 - 13:14:08 CDT)
  • Wenhao Liu (Wed Apr 17 2013 - 13:11:22 CDT)
  • Wenhao Liu (Wed Apr 17 2013 - 13:17:42 CDT)
  • Mayne, Christopher G (Wed Apr 17 2013 - 12:51:05 CDT)
  • Wenhao Liu (Wed Apr 17 2013 - 12:46:20 CDT)
  • Mayne, Christopher G (Wed Apr 17 2013 - 12:26:35 CDT)
  • Mayne, Christopher G (Wed Apr 17 2013 - 09:52:43 CDT)
  • Wenhao Liu (Wed Apr 17 2013 - 09:17:23 CDT)
  • Mayne, Christopher G (Wed Apr 17 2013 - 08:00:26 CDT)
  • Wenhao Liu (Wed Apr 17 2013 - 01:53:12 CDT)
• Is it possible to automatically label all bonds?
  • Axel Kohlmeyer (Mon Oct 31 2011 - 08:10:08 CDT)
  • Mike Wykes (Mon Oct 31 2011 - 07:09:55 CDT)
  • John Stone (Thu Oct 27 2011 - 12:42:54 CDT)
  • Axel Kohlmeyer (Thu Oct 27 2011 - 12:42:02 CDT)
  • Mike Wykes (Thu Oct 27 2011 - 11:43:18 CDT)
• is it possible to enable GPU rendering?
  • John Stone (Wed Feb 01 2012 - 14:12:47 CST)
  • Albert (Wed Feb 01 2012 - 14:04:02 CST)
• is it possible to hide ONLY non-polar hydrogens?
  • poker_at_physics.usyd.edu.au (Fri Jan 20 2012 - 16:41:14 CST)
  • Ajasja LjubetiÄ� (Fri Jan 20 2012 - 04:49:36 CST)
  • Albert (Fri Jan 20 2012 - 03:54:32 CST)
• Is it possible to load a part of a big xtc file faster...
  • Bogdan Costescu (Wed Aug 18 2010 - 10:50:43 CDT)
  • John Stone (Wed Aug 18 2010 - 10:00:08 CDT)
  • Alberto Sergio Garay (Wed Aug 18 2010 - 09:44:56 CDT)
• Is it possible to read a discover trajectory into VMD?
  • John Stone (Mon May 12 2003 - 15:37:44 CDT)
  • Knut Teigen (Sat May 10 2003 - 09:11:23 CDT)
• Is it possible to save the position and angle of the camera for future VMD sessions?
  • Axel Kohlmeyer (Fri Apr 13 2012 - 18:57:22 CDT)
  • Andrew DeYoung (Fri Apr 13 2012 - 13:07:20 CDT)
• Is it possible to select a sub-trajectory specificities.
  • John Stone (Thu Mar 03 2005 - 15:20:59 CST)
  • Stef (Thu Mar 03 2005 - 10:13:28 CST)
  • John Stone (Thu Mar 03 2005 - 09:52:15 CST)
  • Stef (Thu Mar 03 2005 - 04:37:05 CST)
  • Eduard Schreiner (Thu Mar 03 2005 - 06:16:58 CST)
  • Eduard Schreiner (Wed Mar 02 2005 - 05:18:30 CST)
  • Stef (Tue Mar 01 2005 - 08:58:50 CST)
• is it possible to skip frame when using bigdcd
  • maria goranovic (Mon Sep 10 2007 - 04:17:44 CDT)
  • John Stone (Fri Sep 07 2007 - 12:38:26 CDT)
  • Axel Kohlmeyer (Fri Sep 07 2007 - 07:56:23 CDT)
  • maria goranovic (Fri Sep 07 2007 - 03:47:05 CDT)
• Is it possible to use colvars module in VMD python mode?
  • Giacomo Fiorin (Thu Aug 31 2017 - 09:50:57 CDT)
  • yjcoshc (Mon Aug 28 2017 - 03:03:42 CDT)
  • Vermaas, Joshua (Sun Aug 27 2017 - 13:39:21 CDT)
  • yjcoshc_at_gmail.com (Fri Aug 25 2017 - 20:30:33 CDT)
• Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step?
  • Axel Kohlmeyer (Wed Oct 23 2019 - 15:49:48 CDT)
  • Vermaas, Joshua (Wed Oct 23 2019 - 15:19:38 CDT)
  • Vermaas, Joshua (Wed Oct 23 2019 - 14:35:24 CDT)
  • Vermaas, Joshua (Wed Oct 23 2019 - 13:07:18 CDT)
  • Sarah Fowler (Wed Oct 23 2019 - 11:25:03 CDT)
• Is it possible to write CHARMM crd file from VMD?
  • John Stone (Thu Mar 03 2005 - 15:27:01 CST)
  • Leyla Celik (Tue Mar 01 2005 - 04:35:27 CST)
  • John Stone (Thu Feb 24 2005 - 17:42:46 CST)
  • Leyla Celik (Thu Feb 24 2005 - 13:31:03 CST)
• Is it the bug of VMD1.87_partool?
  • Aurum Bai (Wed Nov 18 2009 - 06:29:56 CST)
• Is nvidia 3D Vision + quadro working in linux
  • Axel Kohlmeyer (Tue Apr 27 2010 - 18:20:38 CDT)
  • ben rodriguez (Tue Apr 27 2010 - 17:16:48 CDT)
• Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities?
  • John Stone (Thu Mar 22 2018 - 11:31:04 CDT)
  • John Stone (Fri Oct 13 2017 - 15:05:33 CDT)
  • Prof. Eddie (Wed Oct 11 2017 - 13:08:38 CDT)
  • John Stone (Thu Aug 24 2017 - 15:37:18 CDT)
  • Christopher Neale (Sat Aug 12 2017 - 11:29:49 CDT)
• Is position dependent color possible?
  • Suman Chakrabarty (Tue Sep 02 2008 - 14:02:55 CDT)
  • Suman Chakrabarty (Tue Sep 02 2008 - 12:17:59 CDT)
  • John Stone (Tue Sep 02 2008 - 12:28:06 CDT)
  • Suman Chakrabarty (Tue Sep 02 2008 - 13:27:02 CDT)
• is possible to remove the waterbox before running VMD
  • John Stone (Thu Mar 09 2006 - 10:40:39 CST)
  • John Stone (Thu Mar 09 2006 - 10:39:27 CST)
  • lily jin (Thu Mar 09 2006 - 10:34:02 CST)
• Is there a script to calculate root-mean-square thermal displacement
  • Z.Y.Qiu (Thu Mar 28 2013 - 07:51:31 CDT)
• Is there a way to add custormized representation method to VMD
  • John Stone (Mon Feb 23 2009 - 15:04:06 CST)
  • Yang, Shaorui (Sun Feb 22 2009 - 22:42:19 CST)
• Is there a way to create atom selection for a list of atom indices?
  • Jeffrey A Tibbitt (Thu Mar 29 2018 - 03:29:19 CDT)
  • Jeffrey A Tibbitt (Thu Mar 29 2018 - 01:43:43 CDT)
  • Monika Madhavi (Thu Mar 29 2018 - 02:23:53 CDT)
• is there a way to measure the long axis of a protein or angle between domains in VMD
  • Axel Kohlmeyer (Wed Apr 10 2013 - 03:35:46 CDT)
  • Kristine Manibog (Wed Apr 10 2013 - 00:54:46 CDT)
• Is there a way to validate a structure
  • Javaria Ahmed (Thu Nov 09 2006 - 07:41:10 CST)
• Is there a way to view .Hin files in VMD
  • John Stone (Sat Sep 27 2014 - 23:35:58 CDT)
  • Ganesh Kamath (Fri Sep 26 2014 - 12:38:17 CDT)
• is there any plugin or software to combine PMF trajectory with VMD image?
  • Olya Kravchenko (Wed Feb 08 2017 - 14:45:52 CST)
  • Vermaas, Joshua (Wed Feb 08 2017 - 14:28:31 CST)
  • Olya Kravchenko (Wed Feb 08 2017 - 11:11:16 CST)
• Is there any script to analyze radius gyration, center of mass of namd traj file dcd?
  • Giovanni Bellesia (Thu Jun 22 2006 - 16:19:33 CDT)
  • John Stone (Thu Jun 22 2006 - 14:07:45 CDT)
  • Youyong Li (Thu Jun 22 2006 - 08:23:47 CDT)
• Is there any way to diagonalize a 3x3 matrix in VMD,..........
  • Axel Kohlmeyer (Wed Jan 09 2008 - 14:54:33 CST)
  • Sergio (Wed Jan 09 2008 - 13:18:05 CST)
• Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping?
  • Axel Kohlmeyer (Fri Mar 30 2012 - 08:13:09 CDT)
  • Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 15:32:59 CDT)
  • John Stone (Thu Mar 29 2012 - 14:44:28 CDT)
  • Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 14:31:58 CDT)
• Is there currently support for loading large PDBx or PDBML files (e.g. 4YBB)?
  • John Stone (Wed May 13 2015 - 12:06:36 CDT)
  • Lai, Jonathan (Wed May 13 2015 - 11:55:36 CDT)
• Is there someway to render protein picture without background color?
  • jiali wang (Sat Sep 14 2019 - 20:25:54 CDT)
• Is VMD available to control the movie made by movie maker
  • Axel Kohlmeyer (Mon Aug 04 2014 - 17:24:14 CDT)
  • Xiaohui She (Mon Aug 04 2014 - 16:44:44 CDT)
• is VMD compatible with NVIDIA 3D stereo drivers ?
  • Kim, Kwiseon (Fri Mar 12 2004 - 11:01:29 CST)
  • John Stone (Fri Mar 12 2004 - 10:56:37 CST)
  • Kim, Kwiseon (Fri Mar 12 2004 - 09:50:07 CST)
  • BETTLER Emmanuel (Fri Mar 12 2004 - 08:47:12 CST)
• is VMD portable?
  • John Stone (Thu Apr 04 2019 - 23:51:48 CDT)
  • Michael Morgan (Wed Apr 03 2019 - 21:04:17 CDT)
• Is vmd working in float environment ?
  • John Stone (Tue Sep 17 2002 - 09:37:14 CDT)
  • Stéphane Teletchéa (Tue Sep 17 2002 - 08:20:13 CDT)
• Iso-surfaces, VolumeSlices and tracing with VMD 1.8.2
  • Axel Kohlmeyer (Mon May 24 2004 - 12:44:03 CDT)
  • B.D Allen (Mon May 24 2004 - 10:09:22 CDT)
• Isosurface and Fieldlines Not rendered in colour
  • Burak Cankurtaran (Tue May 26 2009 - 21:17:36 CDT)
  • John Stone (Tue May 26 2009 - 02:42:15 CDT)
  • Axel Kohlmeyer (Tue May 26 2009 - 08:44:49 CDT)
  • Burak Cankurtaran (Tue May 26 2009 - 00:15:44 CDT)
• Isosurface and stepsize
  • John Stone (Fri Jul 09 2004 - 13:09:09 CDT)
  • Simon Latapie (Thu Jul 08 2004 - 04:30:34 CDT)
• isosurface for non-orthorhombic cells
  • John Stone (Wed Feb 27 2013 - 16:35:03 CST)
  • Torsten Kerber (Thu Feb 07 2013 - 08:55:52 CST)
  • John Stone (Thu Feb 07 2013 - 09:05:29 CST)
• isosurface from pdb with beta field
  • Peter Freddolino (Fri Mar 13 2009 - 20:26:06 CDT)
  • Peter Varnai (Fri Mar 13 2009 - 16:09:33 CDT)
• isosurface question
  • John Stone (Wed Oct 29 2008 - 04:47:48 CDT)
  • Raluca Mihaela ANDREI (Tue Oct 28 2008 - 12:48:14 CDT)
  • John Stone (Tue Aug 10 2004 - 16:38:23 CDT)
  • John Stone (Wed Jun 30 2004 - 13:04:29 CDT)
  • John Stone (Mon Jun 28 2004 - 15:11:03 CDT)
  • Randall Hall (Mon Jun 28 2004 - 10:14:20 CDT)
• Isosurface Render - No Color?
  • Axel Kohlmeyer (Tue Jun 21 2016 - 08:19:27 CDT)
  • Foster, Clay A. (Mon Jun 20 2016 - 18:06:37 CDT)
• Isosurface rendering
  • Avell Diroll (Thu Feb 22 2007 - 08:11:28 CST)
  • John Stone (Wed Feb 21 2007 - 17:21:10 CST)
  • Axel Kohlmeyer (Wed Feb 21 2007 - 11:54:12 CST)
  • John Stone (Wed Feb 21 2007 - 11:45:22 CST)
  • Axel Kohlmeyer (Wed Feb 21 2007 - 09:44:21 CST)
  • Avell Diroll (Wed Feb 21 2007 - 06:42:05 CST)
  • John Stone (Tue Feb 20 2007 - 12:53:21 CST)
  • John Stone (Tue Feb 20 2007 - 10:44:36 CST)
  • Avell Diroll (Tue Feb 20 2007 - 08:52:35 CST)
• isosurface saving question
  • YI Zhang (Tue Apr 07 2009 - 20:41:17 CDT)
• isosurface stays gray after using "surface_color" command and "rebuild"
  • John Stone (Wed Jan 11 2017 - 08:07:56 CST)
  • Fux Samuel (ID SIS) (Wed Jan 11 2017 - 07:18:39 CST)
• Isosurface wireframe & solid surface representation
  • Vincent Ustach (Wed Jan 17 2018 - 15:40:12 CST)
  • John Stone (Wed Jan 17 2018 - 12:07:23 CST)
  • Vincent Ustach (Wed Jan 17 2018 - 10:02:22 CST)
• Isosurface wraps in PME Electrostatics calc'n
  • Irene Newhouse (Tue Mar 09 2010 - 15:56:22 CST)
  • Axel Kohlmeyer (Tue Mar 09 2010 - 14:59:13 CST)
  • John Stone (Tue Mar 09 2010 - 14:40:45 CST)
  • Irene Newhouse (Tue Mar 09 2010 - 14:06:02 CST)
• Isosurfaces and volume slices
  • John Stone (Thu Jul 12 2012 - 10:42:53 CDT)
  • FX (Thu Jun 28 2012 - 08:22:29 CDT)
• isosurfaces with non-orthorhombic unit cells using cube file
  • John Stone (Thu Feb 27 2014 - 18:50:19 CST)
  • Karen Chan (Thu Feb 27 2014 - 17:54:03 CST)
• isplay script that displays a system in the original pbc cell
  • John Stone (Mon Feb 27 2006 - 16:11:07 CST)
  • snoze pa (Mon Feb 27 2006 - 11:30:08 CST)
  • John Stone (Thu Feb 23 2006 - 13:50:49 CST)
  • snoze pa (Thu Feb 23 2006 - 13:47:52 CST)
• Issue assigning impropers with topotools
  • SHIVAM TIWARI (Thu Dec 07 2023 - 09:37:08 CST)
  • Diego Gomes (Thu Dec 07 2023 - 09:31:44 CST)
  • SHIVAM TIWARI (Tue Nov 21 2023 - 00:21:27 CST)
• issue drawing a PBC box centered on a selection
  • Ky Wildermuth (Thu Mar 31 2016 - 19:14:48 CDT)
• Issue in Cal. Bonded and Scan Torsion in fftk
  • Mayne, Christopher G (Tue Apr 09 2013 - 13:21:36 CDT)
  • John Stone (Tue Apr 09 2013 - 12:30:24 CDT)
  • Ajasja LjubetiÄ� (Tue Apr 09 2013 - 12:22:56 CDT)
  • John Stone (Tue Apr 09 2013 - 10:28:43 CDT)
  • Win Liu (Tue Apr 02 2013 - 08:53:49 CDT)
  • JC Gumbart (Tue Apr 02 2013 - 07:39:32 CDT)
  • Axel Kohlmeyer (Tue Apr 02 2013 - 02:06:50 CDT)
  • Win Liu (Mon Apr 01 2013 - 23:25:12 CDT)
  • Win Liu (Mon Apr 01 2013 - 23:23:15 CDT)
  • JC Gumbart (Mon Apr 01 2013 - 22:51:27 CDT)
  • Win Liu (Mon Apr 01 2013 - 22:11:35 CDT)
• Issue in wat_hbond.tcl script
  • Alvea Tasneem (Thu Mar 24 2022 - 12:47:24 CDT)
• Issue install VMD 1.9.3 Spack
  • Vermaas, Josh (Mon Dec 05 2022 - 10:13:17 CST)
  • Axel Kohlmeyer (Mon Dec 05 2022 - 05:45:24 CST)
  • Arsene Marian Alain (Mon Dec 05 2022 - 01:34:27 CST)
• Issue rendering cylinders in povray
  • John Stone (Thu Oct 16 2014 - 15:57:32 CDT)
• Issue running vmd and tk commands on my computer through script
  • John Stone (Thu Feb 03 2022 - 23:17:21 CST)
  • Smith, Harper E. (Wed Feb 02 2022 - 09:55:43 CST)
  • Huebert, David Nicolas (Wed Feb 02 2022 - 00:19:31 CST)
• Issue sending forces to atoms with IMD and LAMMPS
  • Tom (Fri May 31 2024 - 15:29:37 CDT)
  • Josh Vermaas (Fri May 31 2024 - 14:51:44 CDT)
  • Tom (Fri May 31 2024 - 12:55:12 CDT)
• Issue viewing GRO file in VMD
  • John Stone (Tue Feb 28 2017 - 16:28:07 CST)
  • Ashar Malik (Fri Feb 24 2017 - 19:10:53 CST)
  • Sanim Rahman (Fri Feb 24 2017 - 17:44:31 CST)
• Issue with "measure rmsf" command
  • Peter Mawanga (Mon Jun 04 2018 - 11:39:37 CDT)
  • Vermaas, Joshua (Mon Jun 04 2018 - 12:03:22 CDT)
  • Peter Mawanga (Mon Jun 04 2018 - 11:58:32 CDT)
  • Vermaas, Joshua (Mon Jun 04 2018 - 11:46:56 CDT)
  • Peter Mawanga (Mon Jun 04 2018 - 10:49:11 CDT)
• Issue with NAMD/VMD tutorial
  • Matthew Bick (Mon May 30 2011 - 14:03:30 CDT)
  • Axel Kohlmeyer (Mon May 30 2011 - 14:49:19 CDT)
  • Axel Kohlmeyer (Mon May 30 2011 - 13:15:58 CDT)
  • Matthew Bick (Mon May 30 2011 - 12:32:29 CDT)
• Issue with NVIDIA GPU Cloud VMD Container
  • Matthew Kenney (Fri Jul 06 2018 - 17:13:59 CDT)
  • Matthew Kenney (Fri Jul 06 2018 - 16:20:05 CDT)
  • John Stone (Fri Jul 06 2018 - 16:04:51 CDT)
  • John Stone (Fri Jul 06 2018 - 16:07:05 CDT)
  • Matthew Kenney (Fri Jul 06 2018 - 15:50:59 CDT)
• issue with ppmtompeg movie making
  • Josh Vermaas (Thu Nov 14 2013 - 13:16:36 CST)
  • Louis Smith (Thu Nov 14 2013 - 11:41:07 CST)
• issue with protein- ligand psfgen
  • Aditi Gotkhindikar (Mon Dec 27 2021 - 05:39:04 CST)
• Issue with STAMP Alignment
  • Phillip Compeau (Mon Dec 20 2021 - 17:22:00 CST)
  • John Stone (Mon Dec 20 2021 - 00:51:18 CST)
  • John Stone (Thu Dec 02 2021 - 14:32:51 CST)
  • John Stone (Wed Dec 01 2021 - 00:42:12 CST)
  • Phillip Compeau (Fri Nov 26 2021 - 22:05:02 CST)
• Issue with Timeline Plugin related to "geometry manager pack"
  • Mariano Spivak (Tue Jan 18 2022 - 10:07:09 CST)
  • Aaron Blanchard, Ph.D. (Mon Jan 17 2022 - 23:23:51 CST)
• Issue with visualizing model
  • Axel Kohlmeyer (Sat Jul 14 2018 - 01:16:28 CDT)
  • Yu,Wenjin (Thu Jul 12 2018 - 10:35:57 CDT)
• Issue with wildcat 3 cards
  • Mads Norregaard-Madsen (Mon Jul 01 2002 - 18:37:15 CDT)
  • John Stone (Mon Jul 01 2002 - 14:34:08 CDT)
  • Will Sheffler (Mon Jul 01 2002 - 14:13:09 CDT)
• issue with wrapping water molecules
  • Yuan Xue (Wed Mar 06 2024 - 20:47:01 CST)
• issue(s) with ffTK of vmd-1.9.2a35
  • Mayne, Christopher G (Wed Feb 26 2014 - 12:57:44 CST)
  • Tim Lo (Tue Feb 25 2014 - 19:38:52 CST)
  • Mayne, Christopher G (Tue Feb 25 2014 - 17:08:14 CST)
  • Massimiliano Porrini (Tue Feb 25 2014 - 16:18:25 CST)
• Issues generating a .psf file
  • Peter Freddolino (Tue May 26 2020 - 11:52:02 CDT)
  • Hélder Bandarra Tavares (Tue May 26 2020 - 10:14:44 CDT)
  • Josh Vermaas (Tue May 26 2020 - 09:50:12 CDT)
  • Hélder Bandarra Tavares (Tue May 26 2020 - 08:47:56 CDT)
• issues rendering images
  • John Stone (Mon Nov 18 2013 - 18:56:45 CST)
  • Tyler Smith (Mon Nov 18 2013 - 18:40:48 CST)
• Issues using AutoPSF
  • Hélder Bandarra Tavares (Tue May 26 2020 - 08:59:08 CDT)
• Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1
  • John Stone (Wed Mar 05 2014 - 16:49:42 CST)
  • John Stone (Wed Mar 05 2014 - 16:40:49 CST)
  • John Stone (Wed Mar 05 2014 - 16:15:00 CST)
  • John Stone (Wed Mar 05 2014 - 09:43:44 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 19:50:32 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 19:39:23 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 19:31:53 CST)
  • John Stone (Tue Mar 04 2014 - 15:39:26 CST)
  • Joshua Anderson (Tue Mar 04 2014 - 13:01:15 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 12:09:54 CST)
  • Maxim Belkin (Tue Mar 04 2014 - 11:16:12 CST)
  • John Stone (Tue Mar 04 2014 - 11:26:01 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 11:09:46 CST)
  • Maxim Belkin (Tue Mar 04 2014 - 10:55:22 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 10:47:34 CST)
  • John Stone (Tue Mar 04 2014 - 10:55:15 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 10:35:49 CST)
  • Phillips, Carolyn L. (Tue Mar 04 2014 - 09:45:23 CST)
  • John Stone (Tue Mar 04 2014 - 09:51:08 CST)
  • John Stone (Mon Mar 03 2014 - 10:08:18 CST)
  • Maxim Belkin (Sun Mar 02 2014 - 17:54:44 CST)
  • Phillips, Carolyn L. (Sun Mar 02 2014 - 16:54:02 CST)
  • Axel Kohlmeyer (Sun Mar 02 2014 - 15:20:48 CST)
  • Phillips, Carolyn L. (Sun Mar 02 2014 - 14:42:31 CST)
• Issues with flickering display using VMD 1.8.7 displaying over X11 to remote Mac
  • Rich Cook (Thu Dec 17 2009 - 12:52:54 CST)
  • John Stone (Wed Dec 16 2009 - 23:55:15 CST)
  • John Stone (Tue Dec 15 2009 - 15:20:01 CST)
  • Rich Cook (Tue Dec 15 2009 - 15:03:07 CST)
• Issues with multiseq
  • Lindsey Prignano (Fri Sep 10 2021 - 16:34:30 CDT)
  • Raul Araya (Fri Sep 10 2021 - 14:16:46 CDT)
• Issues with Paratools and Gaussian
  • JC Gumbart (Sun Jan 16 2011 - 17:12:10 CST)
  • Ali, Rejwan (Wed Jan 12 2011 - 12:13:54 CST)
  • Ali, Rejwan (Wed Jan 12 2011 - 11:57:16 CST)
  • Ali, Rejwan (Wed Jan 12 2011 - 11:54:33 CST)
  • Aaron Oakley (Tue Jan 11 2011 - 19:57:49 CST)
  • Jacqueline Cawthray (Tue Jan 11 2011 - 17:09:37 CST)
  • Ali, Rejwan (Tue Jan 11 2011 - 14:51:18 CST)
• Issues with tachyon internal renderer
  • Tyler Smith (Tue Jan 14 2014 - 16:01:41 CST)
  • John Stone (Tue Jan 14 2014 - 09:50:05 CST)
  • John Stone (Fri Jan 03 2014 - 21:04:28 CST)
  • Tyler Smith (Fri Jan 03 2014 - 19:02:57 CST)
  • Tyler Smith (Fri Jan 03 2014 - 18:43:13 CST)
  • Josh Vermaas (Fri Jan 03 2014 - 16:13:15 CST)
  • Ryan Hoffman (Fri Jan 03 2014 - 16:32:14 CST)
  • Ryan Hoffman (Fri Jan 03 2014 - 16:07:52 CST)
  • Tyler Smith (Fri Jan 03 2014 - 14:19:36 CST)
• Issues with Tcl script for MD Prep
  • John Stone (Wed Jun 19 2019 - 16:42:06 CDT)
  • Roessler, Bryan C (Wed Jun 19 2019 - 14:19:03 CDT)
  • Bassam Haddad (Tue May 28 2019 - 14:29:05 CDT)
  • Matt Veter (Tue May 07 2019 - 13:28:49 CDT)
• Issues with urea and autopsf
  • Josh (Tue Aug 29 2023 - 09:15:58 CDT)
  • Simone Gargano (Tue Aug 29 2023 - 07:17:49 CDT)
• isto variable in gofr
  • Lorenzo Gontrani (Thu Oct 24 2013 - 12:35:13 CDT)
• iTrajComp plugin.
  • John Stone (Sun Apr 26 2009 - 23:09:29 CDT)
  • Andres Morales N (Fri Apr 24 2009 - 22:23:45 CDT)
• Jarzynski analysis
  • Georcki Ropon (Tue Jul 27 2021 - 11:23:34 CDT)
  • Jérôme Hénin (Tue Jul 27 2021 - 07:25:25 CDT)
  • Ropon-Palacios G. (Sun Jun 13 2021 - 22:26:03 CDT)
• JMV
  • John Stone (Mon May 14 2007 - 12:51:15 CDT)
  • Samuel Flores (Sat May 12 2007 - 19:31:09 CDT)
  • Robert Brunner (Wed Mar 31 2004 - 16:36:17 CST)
  • Chris Upton (Wed Mar 31 2004 - 13:30:08 CST)
• JMV Molecular Viewer Support within BioCoRE
  • Robert Brunner (Wed Jul 03 2002 - 16:19:02 CDT)
• Join tens of thousands of LUCKY winners today........
  • Mel Weston (Thu Apr 10 2008 - 05:48:03 CDT)
• Joining DCD files with overlapping frames
  • amin_at_imtech.res.in (Fri Jul 20 2012 - 05:21:58 CDT)
• Joining DCD files with overlapping frames.
  • amin_at_imtech.res.in (Fri Jul 20 2012 - 08:53:47 CDT)
  • JC Gumbart (Fri Jul 20 2012 - 01:40:50 CDT)
  • JC Gumbart (Fri Jul 20 2012 - 00:05:33 CDT)
  • amin_at_imtech.res.in (Thu Jul 19 2012 - 21:53:08 CDT)
• Joining fragments
  • Vermaas, Joshua (Mon Oct 14 2019 - 09:26:56 CDT)
  • Raul Araya (Mon Oct 14 2019 - 07:51:30 CDT)
• Joining nonlinear chain fragments from LAMMPS data file
  • Clement Fang Jin Koh (Wed Aug 11 2021 - 12:32:56 CDT)
• Joystick on Linux
  • Jyh-Shyong Ho (Mon Mar 07 2005 - 23:26:25 CST)
• Joystick, VMD and vrpn on Linux
  • Luis Rosales (Fri Oct 21 2005 - 18:46:37 CDT)
  • John Stone (Thu Oct 20 2005 - 14:25:17 CDT)
  • Luis Rosales (Wed Oct 19 2005 - 20:50:46 CDT)
• joystick, win32 simple interface
  • John Stone (Wed Jun 24 2009 - 15:50:18 CDT)
  • Biff Forbush (Tue Jun 23 2009 - 18:32:57 CDT)
• Joysticks for VMD on Windows XP
  • John Stone (Mon Aug 12 2002 - 18:49:35 CDT)
  • Jill Vickery (Mon Aug 12 2002 - 17:46:29 CDT)
• just a test
  • Vlad Cojocaru (Wed Sep 11 2002 - 08:40:47 CDT)
• K-linked Ub, ACE patch, and autoPSF
  • Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:42 CDT)
  • Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:37 CDT)
  • Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:34 CDT)
• K-means clustering algorithm for multiple frames in C
  • Sourav Ray (Sat Jul 02 2016 - 09:45:25 CDT)
  • Chitrak Gupta (Fri Jul 01 2016 - 13:40:54 CDT)
  • Sourav Ray (Thu Jun 30 2016 - 07:54:04 CDT)
• k3b also launches vmd
  • Francesco Pietra (Thu Nov 11 2010 - 02:10:36 CST)
  • Francesco Pietra (Wed Nov 10 2010 - 13:33:43 CST)
  • John Stone (Wed Nov 10 2010 - 10:47:01 CST)
  • Francesco Pietra (Wed Nov 10 2010 - 03:05:03 CST)
• Keeping Dotted Structure when Rendering using PovRay
  • Nick Palmer (Fri Aug 23 2019 - 10:25:31 CDT)
• Keeping molecules intact when unwrapping
  • Jérôme Hénin (Tue Feb 18 2020 - 11:23:08 CST)
  • Axel Kohlmeyer (Sun Feb 16 2020 - 17:37:22 CST)
  • Giacomo Fiorin (Sun Feb 16 2020 - 12:30:19 CST)
  • Minjung Godfrey (Sat Feb 15 2020 - 17:39:49 CST)
• keeping original coordinates in trajectory
  • John Stone (Thu Mar 10 2005 - 10:56:41 CST)
  • David A. Horita (Wed Mar 09 2005 - 14:27:28 CST)
• keeping two ligands in a box
  • Vermaas, Josh (Tue Jul 25 2023 - 06:08:36 CDT)
  • Ackad, Edward (Mon Jul 24 2023 - 08:06:19 CDT)
  • Vermaas, Josh (Sun Jul 23 2023 - 16:28:50 CDT)
  • Ackad, Edward (Sun Jul 23 2023 - 07:55:48 CDT)
  • Vermaas, Josh (Sun Jul 23 2023 - 03:45:49 CDT)
  • Ackad, Edward (Sat Jul 22 2023 - 09:00:19 CDT)
• Keyboard mapping incorrect for OS X
  • Dan Wright (Thu Feb 17 2005 - 21:48:21 CST)
  • John Stone (Thu Feb 17 2005 - 14:42:32 CST)
  • Francis Reyes (Thu Feb 17 2005 - 13:50:00 CST)
• keyboard-mouse-controlled view for VMDMovie plugin
  • Kirby Vandivort (Tue Mar 09 2010 - 16:00:47 CST)
  • Tibbitt, Jeffrey A. (Tue Mar 09 2010 - 10:27:36 CST)
• keyframe animations
  • John Stone (Tue Sep 23 2003 - 10:53:08 CDT)
  • Ross J. Toedte (Tue Sep 23 2003 - 07:04:25 CDT)
• keywords to access surface?
  • John Stone (Mon Sep 19 2005 - 10:19:59 CDT)
  • Daniel Strahs (Sun Sep 18 2005 - 18:39:00 CDT)
  • John Stone (Fri Sep 16 2005 - 21:03:41 CDT)
  • Dan Strahs (Fri Sep 16 2005 - 19:44:53 CDT)
• kill source'd tcl script
  • Axel Kohlmeyer (Wed Mar 28 2012 - 08:50:02 CDT)
  • Mikkel Vestergaard (Wed Mar 28 2012 - 04:41:15 CDT)
  • Philippe Bopp / temporary (Wed Mar 28 2012 - 03:37:12 CDT)
• Knowing the euler angles from a particular orientation
  • Nitin Bhardwaj (Tue Mar 29 2005 - 13:18:20 CST)
• Knowing the euler angles from a particular orientation.
  • Nitin Bhardwaj (Mon Mar 28 2005 - 18:41:25 CST)
• known issues with measure hbonds
  • JC Gumbart (Mon Dec 29 2008 - 09:31:59 CST)
  • Harindar Keer (Thu Dec 18 2008 - 17:59:34 CST)
• KS UIUC isn't accessible in new Firefox
  • John Stone (Thu Mar 12 2020 - 13:22:27 CDT)
  • viktor drobot (Thu Mar 12 2020 - 09:47:11 CDT)
• Kshatresh Dutta, let's connect on LinkedIn
  • shiyong liu (Sat Apr 06 2013 - 00:06:13 CDT)
• L-DOPA and non-natural amino acids incorporation
  • Michael Robinson (Mon Dec 06 2021 - 05:41:07 CST)
  • Hideyuki Miyatake (Mon Dec 06 2021 - 04:30:50 CST)
  • Hideyuki Miyatake (Sat Dec 04 2021 - 06:00:11 CST)
• L-DOPA incorporation
  • Hideyuki Miyatake (Sat Dec 04 2021 - 04:25:59 CST)
• L/R lighting discrepancy
  • John Stone (Thu Nov 10 2005 - 09:52:34 CST)
  • Bram Stolk (Thu Nov 10 2005 - 06:48:47 CST)
  • John Stone (Wed Nov 09 2005 - 11:32:57 CST)
  • John Stone (Wed Nov 09 2005 - 10:36:41 CST)
  • Bram Stolk (Wed Nov 09 2005 - 04:51:10 CST)
  • John Stone (Tue Nov 08 2005 - 14:08:01 CST)
  • Bram Stolk (Tue Nov 08 2005 - 14:01:25 CST)
  • John Stone (Tue Nov 08 2005 - 10:55:57 CST)
  • Bram Stolk (Tue Nov 08 2005 - 10:44:39 CST)
• Label all atoms using script
  • Raman Preet Singh (Sat Oct 01 2022 - 11:40:20 CDT)
  • Raman Preet Singh (Sat Oct 01 2022 - 08:55:36 CDT)
• label all residues
  • Peter Freddolino (Wed Aug 13 2008 - 10:29:20 CDT)
  • Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
• Label on Movie
  • Axel Kohlmeyer (Mon May 26 2008 - 14:06:52 CDT)
  • Wei Huang (Mon May 26 2008 - 14:21:22 CDT)
  • Axel Kohlmeyer (Mon May 26 2008 - 12:02:08 CDT)
  • Wei Huang (Mon May 26 2008 - 10:26:30 CDT)
• label options
  • John Stone (Sun Sep 20 2009 - 15:35:25 CDT)
  • Taufik Al-Sarraj (Thu Sep 17 2009 - 13:46:29 CDT)
• label placement with smoothed trajectory
  • Miro Astore (Sat Apr 18 2020 - 20:29:41 CDT)
• Label using TCL
  • John Stone (Mon Nov 22 2004 - 21:16:10 CST)
  • Ekta Khurana (Mon Nov 22 2004 - 18:43:28 CST)
• labeling a residue
  • John Stone (Mon Jun 21 2004 - 13:59:02 CDT)
  • Han Choe (Mon May 24 2004 - 03:57:42 CDT)
• Labeling atoms by index
  • Maxim Belkin (Sat Aug 16 2014 - 03:49:18 CDT)
  • Maxim Belkin (Sat Aug 16 2014 - 03:36:23 CDT)
  • Maxim Belkin (Sat Aug 16 2014 - 02:48:51 CDT)
  • Andrew DeYoung (Fri Aug 15 2014 - 16:46:00 CDT)
• labeling bonds between two atoms
  • Axel Kohlmeyer (Thu Jan 14 2010 - 17:17:35 CST)
  • gurunath katagi (Thu Jan 14 2010 - 12:12:36 CST)
• labeling for movie title
  • John Stone (Mon Jun 04 2007 - 16:04:21 CDT)
  • xiaoqin huang (Mon Jun 04 2007 - 13:21:54 CDT)
  • xiaoqin huang (Mon Jun 04 2007 - 11:43:13 CDT)
• labeling index of atoms of a particular type
  • Aman Jindal (Sat May 14 2016 - 05:19:40 CDT)
• Labelling Coordinates (not Atoms)
  • Anthony Ivetac (Wed Jun 18 2008 - 21:32:03 CDT)
  • Axel Kohlmeyer (Wed Jun 18 2008 - 18:43:57 CDT)
  • Anthony Ivetac (Wed Jun 18 2008 - 17:52:09 CDT)
• labels
  • John Stone (Wed Mar 29 2006 - 10:54:12 CST)
  • Nguyen Hoang Phuong (Wed Mar 29 2006 - 10:42:50 CST)
• Labels 'springs' in labels form
  • John Stone (Fri Nov 08 2002 - 17:33:21 CST)
  • Stéphane Teletchéa (Wed Nov 06 2002 - 07:44:24 CST)
• Labels (atom type, partial charge)
  • John Stone (Thu Jul 17 2003 - 20:14:25 CDT)
  • Bartek Dobrzelecki (Thu Jul 17 2003 - 06:00:22 CDT)
• Labels for part of a trajectory
  • M Karim (Thu Sep 25 2014 - 18:38:45 CDT)
  • Josh Vermaas (Thu Sep 25 2014 - 11:29:14 CDT)
  • Thomas Sexton (Thu Sep 25 2014 - 10:28:10 CDT)
• Labels not appearing with "load state"
  • Ignacio Fernández Galván (Mon Sep 11 2006 - 02:28:23 CDT)
  • John Stone (Sun Sep 10 2006 - 01:36:13 CDT)
  • Ignacio Fernández Galván (Fri Sep 08 2006 - 07:59:07 CDT)
• Labels on top of atoms
  • Pierpaolo Pravatto (Mon Jan 02 2023 - 02:27:13 CST)
• labels with sub/superscripts or even symbols
  • John Stone (Mon May 07 2018 - 16:24:28 CDT)
  • sperez14_at_us.es (Tue Mar 27 2018 - 01:50:05 CDT)
• lags on VDW
  • John Stone (Mon Dec 12 2005 - 10:44:09 CST)
  • Aleksander Debinski (Mon Dec 12 2005 - 03:54:33 CST)
• lammps and vmd
  • Axel Kohlmeyer (Tue Jul 11 2006 - 11:21:19 CDT)
  • H Q (Mon Jul 10 2006 - 22:04:20 CDT)
• lammps charge data, adding bond
  • Erik (Wed Feb 27 2013 - 19:50:07 CST)
• lammps data file simulation box center and VMD origin
  • Madhur Aggarwal (Wed Oct 02 2019 - 16:11:13 CDT)
  • Axel Kohlmeyer (Wed Oct 02 2019 - 15:07:54 CDT)
  • Madhur Aggarwal (Wed Oct 02 2019 - 13:02:23 CDT)
  • Madhur Aggarwal (Wed Oct 02 2019 - 12:51:54 CDT)
  • Bassam Haddad (Wed Oct 02 2019 - 11:18:32 CDT)
  • Giacomo Fiorin (Wed Oct 02 2019 - 10:28:54 CDT)
  • Madhur Aggarwal (Wed Oct 02 2019 - 09:53:05 CDT)
• Lammps data visualization with VMD
  • Axel Kohlmeyer (Mon Sep 05 2016 - 22:01:25 CDT)
• Lammps Output data format
  • Axel Kohlmeyer (Tue Aug 30 2011 - 12:45:15 CDT)
  • Axel Kohlmeyer (Tue Aug 30 2011 - 10:54:19 CDT)
  • winardi, erik (Tue Aug 30 2011 - 10:44:49 CDT)
  • Axel Kohlmeyer (Mon Aug 29 2011 - 13:20:02 CDT)
  • winardi, erik (Mon Aug 29 2011 - 12:20:31 CDT)
• LAMMPS output with VMD
  • Nathan Kern (Mon Aug 03 2020 - 10:28:15 CDT)
  • Axel Kohlmeyer (Mon Aug 03 2020 - 09:57:20 CDT)
  • Keister, Bradley (Mon Aug 03 2020 - 09:12:26 CDT)
• LAMMPS reader
  • John Stone (Wed Feb 23 2005 - 15:38:34 CST)
  • Kooser, Ara S (Tue Feb 22 2005 - 10:58:25 CST)
• Lammps simulation
  • Ivan Moncayo (Mon Sep 24 2012 - 13:02:51 CDT)
  • Axel Kohlmeyer (Mon Sep 24 2012 - 12:47:11 CDT)
  • Ivan Moncayo (Mon Sep 24 2012 - 11:39:06 CDT)
• LAMMPS Trajectory
  • Axel Kohlmeyer (Sun May 23 2010 - 17:24:08 CDT)
  • Moslem Sabouri (Sun May 23 2010 - 04:46:17 CDT)
  • John Stone (Wed Oct 04 2006 - 00:19:00 CDT)
  • Tamara Rogers (Fri Sep 29 2006 - 04:04:33 CDT)
• LAMMPS Trajectory Bond Specification
  • Axel Kohlmeyer (Thu Aug 14 2008 - 16:24:13 CDT)
  • Nazanin Samadi (Thu Aug 14 2008 - 15:24:45 CDT)
  • nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
• LAMMPS trajectory file
  • Anna Ceguerra (Tue May 11 2010 - 03:32:52 CDT)
  • Axel Kohlmeyer (Mon May 10 2010 - 23:25:23 CDT)
  • Anna Ceguerra (Mon May 10 2010 - 21:12:28 CDT)
• LAMMPS tutorial and Materials Simulation Symposium @ Temple, August 15-19, 2016
  • Axel Kohlmeyer (Fri Apr 29 2016 - 21:11:16 CDT)
• LAMMPS visualization
  • Akiyama, Jotaro (Thu Nov 11 2004 - 18:27:15 CST)
  • Jim Shepherd (Thu Nov 11 2004 - 17:30:26 CST)
  • John Stone (Thu Nov 11 2004 - 15:13:14 CST)
  • tsirk (Thu Nov 11 2004 - 15:02:42 CST)
• LAMMPS Vizualization
  • Frederick R. Phelan Jr. (Mon Mar 14 2005 - 17:26:48 CST)
  • John Stone (Mon Mar 14 2005 - 15:14:04 CST)
  • John Stone (Mon Mar 14 2005 - 13:33:36 CST)
  • Frederick R. Phelan Jr. (Mon Mar 14 2005 - 10:21:52 CST)
• lammpstrj file as pdb
  • John Stone (Tue Oct 27 2009 - 12:06:56 CDT)
  • John Stone (Tue Oct 27 2009 - 12:21:49 CDT)
  • Christine Horejs (Tue Oct 27 2009 - 12:18:15 CDT)
  • Christine Horejs (Tue Oct 27 2009 - 11:50:06 CDT)
• lammpstrj move out zoom
  • Axel Kohlmeyer (Fri Jan 01 2021 - 11:03:26 CST)
  • John Stone (Thu Dec 31 2020 - 15:04:46 CST)
  • alberto (Fri Sep 18 2020 - 08:53:22 CDT)
• LANG setting needs to be solved in next release....
  • Bogdan Costescu (Thu May 20 2010 - 08:47:06 CDT)
  • Rob (Thu May 20 2010 - 02:16:43 CDT)
  • Bogdan Costescu (Wed May 19 2010 - 09:14:27 CDT)
  • John Stone (Wed May 19 2010 - 08:41:47 CDT)
  • Bogdan Costescu (Wed May 19 2010 - 08:34:38 CDT)
  • John Stone (Tue May 18 2010 - 22:18:28 CDT)
  • Rob (Tue May 18 2010 - 19:33:06 CDT)
• Language definitions - \usepackage{listings}
  • Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:26:20 CDT)
  • Axel Kohlmeyer (Tue Jul 17 2007 - 07:11:54 CDT)
  • Nuno Loureiro Ferreira (Tue Jul 17 2007 - 07:35:17 CDT)
  • Nuno Loureiro Ferreira (Mon Jul 16 2007 - 12:19:59 CDT)
  • John Stone (Mon Jul 16 2007 - 11:58:29 CDT)
  • Nuno Loureiro Ferreira (Sat Jul 14 2007 - 10:47:57 CDT)
• Large angle force constants with FFTK
  • Mayne, Christopher G (Wed Jan 07 2015 - 09:52:14 CST)
  • Elena Lilkova (Tue Jan 06 2015 - 07:32:57 CST)
• Large dcd file
  • jouko_at_berkeley.edu (Tue Jan 06 2009 - 22:32:51 CST)
  • Axel Kohlmeyer (Tue Jan 06 2009 - 19:04:46 CST)
  • Axel Kohlmeyer (Tue Jan 06 2009 - 19:01:25 CST)
  • Roman Petrenko (Tue Jan 06 2009 - 17:25:03 CST)
  • jouko_at_berkeley.edu (Tue Jan 06 2009 - 16:31:46 CST)
• large DCD file "appears to contain no timesteps"
  • John Stone (Mon Jan 23 2006 - 13:28:49 CST)
  • Linghao Zhong (Mon Jan 23 2006 - 13:15:47 CST)
• large mdcrd files
  • John Stone (Sun Aug 20 2006 - 14:09:50 CDT)
  • Lubos Vrbka (Sun Aug 20 2006 - 11:27:19 CDT)
  • alexandra.marques_at_fc.up.pt (Sun Aug 20 2006 - 07:56:30 CDT)
• Large Molecule in CAVE Enviroment
  • John Stone (Thu Jan 18 2007 - 01:59:41 CST)
  • Christian Wohlschlager (Thu Jan 18 2007 - 01:35:06 CST)
• Large number of harmonic distance restraints
  • Giacomo Fiorin (Tue May 29 2018 - 11:30:34 CDT)
  • Nick Palmer (Tue May 29 2018 - 11:04:27 CDT)
• Large positive non-integer charge
  • John Stone (Tue May 17 2011 - 11:03:29 CDT)
  • Grant Schauer (Thu May 12 2011 - 18:03:12 CDT)
  • John Stone (Thu May 12 2011 - 16:06:32 CDT)
  • David A. Horita (Thu May 12 2011 - 16:51:39 CDT)
  • Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
  • Grant Schauer (Thu May 12 2011 - 14:16:14 CDT)
  • John Stone (Thu May 12 2011 - 14:00:30 CDT)
  • Grant Schauer (Thu May 12 2011 - 13:16:46 CDT)
• large selection
  • Ioana Cozmuta (Wed Mar 15 2006 - 23:33:46 CST)
  • John Stone (Wed Mar 15 2006 - 10:13:58 CST)
  • Ioana Cozmuta (Tue Mar 14 2006 - 18:17:46 CST)
  • John Stone (Tue Mar 14 2006 - 18:05:29 CST)
  • Ioana Cozmuta (Tue Mar 14 2006 - 18:00:27 CST)
• Largest published IMD (interactive simulation) examples?
  • John Stone (Tue Sep 04 2012 - 14:11:09 CDT)
  • Thomas C. Bishop (Tue Sep 04 2012 - 13:19:51 CDT)
  • Marc Baaden (Tue Sep 04 2012 - 12:02:10 CDT)
• last call for early registrations for "Horizons2005"
  • Vlad Cojocaru (Fri Jan 14 2005 - 07:19:00 CST)
• LAST CALL: Free Energy Workshop, Münster, March 9-11, 2015
  • Vlad Cojocaru (Tue Feb 03 2015 - 14:35:02 CST)
• Later protein diffusion through membrane--PBC tools problem
  • Josh Vermaas (Wed Jun 24 2015 - 16:46:52 CDT)
  • Marawan Hussien (Wed Jun 24 2015 - 15:51:57 CDT)
• latest beta nVidia driver for Windows looks good so far...
  • Eugen Leitl (Tue Apr 04 2006 - 02:04:43 CDT)
  • snoze pa (Tue Apr 04 2006 - 00:18:22 CDT)
  • John Stone (Mon Apr 03 2006 - 20:00:50 CDT)
• Latest Linux News?
  • s.hogg_at_ic.ac.uk (Fri Jul 04 1997 - 13:58:40 CDT)
• Latest list of VMD citations
  • John Stone (Wed Jul 26 2006 - 15:58:09 CDT)
• latest vmd
  • Axel Kohlmeyer (Sat Feb 12 2011 - 19:06:57 CST)
  • Francesco Oteri (Sat Feb 12 2011 - 18:23:52 CST)
• launching fftk
  • John Stone (Thu Jan 28 2021 - 15:28:35 CST)
  • Prof. Eddie (Wed Jan 27 2021 - 16:36:47 CST)
• Launching Tk Console
  • Arneh Babakhani (Wed May 10 2006 - 19:00:57 CDT)
  • Leonardo G. Trabuco (Wed May 10 2006 - 11:58:53 CDT)
  • Arneh Babakhani (Wed May 10 2006 - 11:23:42 CDT)
• Launching VMD Gui from WSL Centos compiled from source
  • John Stone (Mon May 23 2022 - 09:51:05 CDT)
  • manuel mourato (Sat May 21 2022 - 13:26:21 CDT)
  • Axel Kohlmeyer (Sat May 21 2022 - 11:07:29 CDT)
  • manuel mourato (Sat May 21 2022 - 07:58:43 CDT)
• Leap Motion
  • Axel Kohlmeyer (Tue Jul 30 2013 - 04:13:53 CDT)
  • Olaf Lenz (Tue Jul 30 2013 - 03:19:38 CDT)
• Left Right eye stereo flip in Crystal Eyes
  • John Stone (Thu Sep 15 2005 - 11:09:35 CDT)
  • Chang, Christopher (Wed Sep 14 2005 - 15:18:37 CDT)
  • Jill Vickery (Wed Sep 14 2005 - 14:04:52 CDT)
• Lennard-Jones parameters
  • Abolfazl Bayat (Tue Oct 02 2012 - 10:28:38 CDT)
• Lennard-Jones parameters of rubidium
  • Abolfazl Bayat (Fri Oct 05 2012 - 10:44:19 CDT)
• LES problem
  • Irene Newhouse (Tue Jul 07 2009 - 00:25:20 CDT)
  • Irene Newhouse (Tue Jul 07 2009 - 00:28:21 CDT)
• lib/stride/README
  • John Stone (Wed Mar 21 2012 - 11:13:32 CDT)
  • Ajasja LjubetiÄ� (Tue Mar 20 2012 - 02:39:29 CDT)
  • Benjamin Kaduk (Mon Mar 19 2012 - 21:57:22 CDT)
• libcprts.so.6 not found by VMD on RedHat EL3 (ia64).
  • Bogdan Costescu (Mon Apr 10 2006 - 11:23:46 CDT)
  • John Stone (Mon Apr 10 2006 - 10:20:52 CDT)
  • guy.baudoux_at_gskbio.com (Mon Apr 10 2006 - 08:31:38 CDT)
• libGLU.so missing?
  • Axel Kohlmeyer (Fri May 18 2012 - 19:53:59 CDT)
  • Fatemesadat Emami (Fri May 18 2012 - 18:55:21 CDT)
• Library to display molecule into Qt widget
  • John Stone (Thu Oct 11 2018 - 21:08:19 CDT)
  • Endri Kastrati (Thu Oct 11 2018 - 20:00:27 CDT)
• libX11.so.6 error
  • John Stone (Wed Sep 13 2017 - 15:51:42 CDT)
  • Francesco Pietra (Wed Sep 13 2017 - 11:31:25 CDT)
  • Francesco Pietra (Wed Sep 13 2017 - 10:04:00 CDT)
  • John Stone (Wed Sep 13 2017 - 11:02:27 CDT)
• License question
  • John Stone (Sat Jan 29 2011 - 19:18:20 CST)
  • Gianluca Interlandi (Sat Jan 29 2011 - 16:19:27 CST)
• Licorice in transparent surface visualisation
  • Sabine Reisser (Fri Feb 15 2013 - 09:58:06 CST)
  • Axel Kohlmeyer (Fri Feb 15 2013 - 09:43:11 CST)
  • Sabine Reisser (Fri Feb 15 2013 - 08:57:40 CST)
• ligand names
  • Peter Freddolino (Fri Apr 03 2009 - 15:54:42 CDT)
  • Katherine Parra (Fri Apr 03 2009 - 10:35:54 CDT)
• ligand parametrization
  • Jan Saam (Mon May 28 2007 - 18:51:57 CDT)
  • John Stone (Mon May 28 2007 - 16:12:02 CDT)
  • Karol Kaszuba (Mon May 28 2007 - 10:57:05 CDT)
• ligand-protein bonds representation
  • Axel Kohlmeyer (Tue Apr 22 2014 - 10:53:19 CDT)
  • Jeremías Corradi (Tue Apr 22 2014 - 10:08:58 CDT)
  • Axel Kohlmeyer (Tue Apr 22 2014 - 09:50:52 CDT)
  • Jeremías Corradi (Tue Apr 22 2014 - 08:36:14 CDT)
• limit on segment atom number in solvate and autoionize
  • John Stone (Fri Mar 11 2005 - 15:13:12 CST)
  • Philip Blood (Fri Mar 11 2005 - 13:44:45 CST)
  • John Stone (Fri Mar 11 2005 - 13:38:23 CST)
  • Philip Blood (Fri Mar 11 2005 - 13:18:22 CST)
  • Philip Blood (Fri Mar 11 2005 - 11:52:41 CST)
• Limit to total number of atoms in PSF?
  • Jeeno Jose (Wed May 13 2015 - 12:18:50 CDT)
  • Maxim Belkin (Wed May 13 2015 - 09:52:28 CDT)
  • Jeeno Jose (Wed May 13 2015 - 09:04:07 CDT)
  • John Stone (Wed May 13 2015 - 09:26:46 CDT)
  • Jeeno Jose (Wed May 13 2015 - 03:12:52 CDT)
  • John Stone (Wed May 13 2015 - 01:49:00 CDT)
  • Jeeno Jose (Wed May 13 2015 - 01:38:25 CDT)
• Limits of the VMD Visualisation
  • Jan Janssen (Thu Nov 10 2016 - 07:30:38 CST)
  • Jan Janssen (Thu Nov 10 2016 - 02:51:03 CST)
  • John Stone (Thu Nov 10 2016 - 01:45:01 CST)
  • Jan Janssen (Thu Nov 10 2016 - 01:29:50 CST)
  • Axel Kohlmeyer (Wed Nov 09 2016 - 12:21:13 CST)
  • Jan Janssen (Wed Nov 09 2016 - 10:59:56 CST)
• lindex related question
  • Axel Kohlmeyer (Fri Feb 25 2011 - 16:11:42 CST)
  • Axel Kohlmeyer (Fri Feb 25 2011 - 15:49:48 CST)
  • Pavan Ghatty (Fri Feb 25 2011 - 15:09:45 CST)
• line
  • DanLiu (Wed Nov 20 2013 - 11:13:17 CST)
  • Suresh (Wed Dec 04 2013 - 03:52:50 CST)
  • DanLiu (Tue Nov 19 2013 - 02:01:37 CST)
• Link atoms
  • snoze pa (Thu Jan 10 2008 - 10:45:28 CST)
  • John Stone (Wed Jan 09 2008 - 22:51:46 CST)
  • snoze pa (Wed Jan 09 2008 - 10:23:31 CST)
  • snoze pa (Tue Jan 08 2008 - 18:10:11 CST)
• Link between the electrostatic potential on the surface and the grid.dx generated by APBS
  • John Stone (Mon Feb 02 2009 - 10:41:09 CST)
  • Emeline Leproult (Mon Feb 02 2009 - 09:57:02 CST)
• LINK or PACTH command in VMD
  • snoze pa (Wed Sep 14 2011 - 15:56:13 CDT)
  • Axel Kohlmeyer (Wed Sep 14 2011 - 13:38:40 CDT)
  • snoze pa (Wed Sep 14 2011 - 11:48:53 CDT)
• Link Patch?
  • Al-Ali, Hassan (Fri Oct 08 2010 - 23:39:15 CDT)
• Linkage problem when compiling fortran bindings for VMD molfile plugins
  • John Stone (Fri Mar 18 2011 - 11:25:20 CDT)
  • Susana Tomasio (Fri Mar 18 2011 - 11:21:56 CDT)
  • Axel Kohlmeyer (Fri Mar 18 2011 - 11:14:31 CDT)
  • John Stone (Fri Mar 18 2011 - 10:13:20 CDT)
  • Susana Tomasio (Fri Mar 18 2011 - 08:55:33 CDT)
  • Axel Kohlmeyer (Mon Mar 14 2011 - 18:08:53 CDT)
  • Susana Tomasio (Mon Mar 14 2011 - 16:49:11 CDT)
  • John Stone (Mon Mar 14 2011 - 16:22:58 CDT)
  • Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
  • Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
  • Susana Tomasio (Mon Mar 14 2011 - 11:52:49 CDT)
• Linking 4 proteins
  • Aditya Padhi (Thu Jul 21 2016 - 22:49:35 CDT)
• Linking Error on Mac OS X
  • John Stone (Mon Sep 24 2012 - 15:03:56 CDT)
  • Stephen Herbein (Mon Sep 24 2012 - 10:45:25 CDT)
• Linking to molfile_plugin libraries
  • John Stone (Fri May 29 2009 - 13:24:30 CDT)
  • David Tanner (Fri May 29 2009 - 13:30:24 CDT)
  • David Tanner (Fri May 29 2009 - 13:02:59 CDT)
  • David Tanner (Fri May 29 2009 - 13:18:28 CDT)
  • John Stone (Fri May 29 2009 - 13:07:26 CDT)
• Linking with FLTK 1.1.0b12
  • Justin Gullingsrud (Tue Apr 09 2002 - 16:43:48 CDT)
  • John Stone (Tue Apr 09 2002 - 16:01:55 CDT)
• Linux compile error
  • John Stone (Mon Jul 29 2002 - 13:46:08 CDT)
  • Cesar Delgado (Fri Jul 26 2002 - 15:47:34 CDT)
• linux graphics adapters?
  • David E. Jones (Thu Jul 13 2000 - 14:43:06 CDT)
  • John Stone (Thu Jul 13 2000 - 12:50:58 CDT)
  • Michael Galloway (Thu Jul 13 2000 - 12:36:28 CDT)
  • John Stone (Thu Jul 13 2000 - 10:10:48 CDT)
  • Guy Coates (Thu Jul 13 2000 - 07:05:42 CDT)
  • Michael Galloway (Thu Jul 13 2000 - 06:57:25 CDT)
• linux graphics adapters?)
  • Andrew Dalke (Sun Jul 16 2000 - 20:54:55 CDT)
  • John Stone (Sun Jul 16 2000 - 14:06:08 CDT)
  • Tim Freeman (Sun Jul 16 2000 - 12:05:02 CDT)
• Linux HiDPI screens
  • FX (Mon Nov 07 2022 - 08:33:18 CST)
• linux installation
  • John Stone (Wed Nov 03 2004 - 10:02:40 CST)
  • MERIC AYSE OVACIK (Wed Nov 03 2004 - 03:57:20 CST)
• Linux installation issue
  • Axel Kohlmeyer (Sat May 26 2007 - 15:32:59 CDT)
  • Francesco Pietra (Sat May 26 2007 - 09:38:53 CDT)
• linux issues
  • Bennion, Brian (Mon Sep 12 2011 - 12:25:34 CDT)
  • Axel Kohlmeyer (Mon Sep 12 2011 - 12:03:04 CDT)
  • John Stone (Mon Sep 12 2011 - 11:22:06 CDT)
  • Vivek Ranjan (Mon Sep 12 2011 - 11:01:25 CDT)
• linux mesa binaries no longer available?
  • John Stone (Tue Aug 26 2003 - 14:13:11 CDT)
  • Lubos Vrbka (Tue Aug 26 2003 - 12:20:31 CDT)
• Linux/Intel configuration for processing large trajectory file
  • Johannes von Langen (Mon Jul 22 2002 - 05:26:19 CDT)
  • Liu, Zhanwu (Fri Jul 19 2002 - 17:18:10 CDT)
• Lipid area
  • dimka (Mon Nov 07 2005 - 13:10:20 CST)
• Lipid Bilayer Shearing
  • Sachin Natesh (Tue Aug 16 2016 - 12:01:15 CDT)
• lipid bilayer thickness
  • Axel Kohlmeyer (Sun Nov 06 2011 - 06:14:50 CST)
  • Andrés Morales (Sun Nov 06 2011 - 00:07:36 CDT)
• lipid definition
  • Jim Phillips (Thu May 26 2005 - 13:11:08 CDT)
  • John Stone (Thu May 26 2005 - 10:17:55 CDT)
  • dimka (Wed May 25 2005 - 10:55:04 CDT)
• lipid headgroup analysis
  • syma (Mon Feb 26 2007 - 04:38:35 CST)
• Lipid Membrane
  • Axel Kohlmeyer (Mon Oct 12 2009 - 08:39:20 CDT)
  • Ale Gomez (Sun Oct 11 2009 - 22:58:08 CDT)
• Lipid order paramaeter script
  • Ban Arn (Thu Apr 05 2012 - 04:35:52 CDT)
• lipid order parameter
  • John Stone (Tue Apr 17 2012 - 00:01:18 CDT)
  • Ban Arn (Mon Apr 16 2012 - 05:16:31 CDT)
  • Sebastian Stolzenberg (Sat Nov 07 2009 - 16:49:42 CST)
  • Sebastian Stolzenberg (Sat Nov 07 2009 - 16:48:29 CST)
  • Justin Gullingsrud (Fri Sep 23 2005 - 11:13:16 CDT)
  • Nicolas Sapay (Wed Sep 21 2005 - 13:21:28 CDT)
  • Justin Gullingsrud (Wed Sep 21 2005 - 12:26:37 CDT)
  • Justin Gullingsrud (Wed Sep 21 2005 - 12:26:12 CDT)
  • Nicolas Sapay (Wed Sep 21 2005 - 02:44:45 CDT)
  • Saladino, Alex (Tue Sep 20 2005 - 16:21:30 CDT)
• Lipid Order Parameter]
  • Nicolas Sapay (Wed Sep 21 2005 - 13:29:06 CDT)
• Lipid order parameters
  • Ganesh Kamath (Mon Feb 27 2012 - 14:21:13 CST)
• Lipid Packing Defect in vmd
  • Diship Srivastava (Sun Jun 06 2021 - 04:57:06 CDT)
• lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations)
  • Cesar Luis Avila (Wed Jun 06 2007 - 10:55:19 CDT)
  • Cesar Luis Avila (Wed May 30 2007 - 20:36:09 CDT)
  • Axel Kohlmeyer (Wed May 30 2007 - 14:14:08 CDT)
  • Richard Swenson (Wed May 30 2007 - 14:15:13 CDT)
• lipid tail selection
  • Danielle Chandler (Thu Oct 09 2008 - 14:30:37 CDT)
  • Axel Kohlmeyer (Mon Oct 06 2008 - 09:18:15 CDT)
  • BIN ZHANG (Sun Oct 05 2008 - 01:16:45 CDT)
• Lipids generated by VMD could not use "coordpdb" to read
  • jiali wang (Mon Mar 30 2020 - 14:40:04 CDT)
  • JC Gumbart (Mon Mar 30 2020 - 12:48:52 CDT)
  • JC Gumbart (Fri Mar 27 2020 - 17:17:58 CDT)
  • jiali wang (Thu Mar 26 2020 - 23:42:27 CDT)
• list in TCL
  • Cesar Luis Avila (Mon Jun 04 2007 - 20:07:33 CDT)
  • JC Gumbart (Mon Jun 04 2007 - 19:41:42 CDT)
  • Giovanni Bellesia (Mon Jun 04 2007 - 19:39:37 CDT)
  • John Stone (Mon Jun 04 2007 - 19:36:42 CDT)
  • lily jin (Mon Jun 04 2007 - 18:47:16 CDT)
• list of all the file type keywords for "mol load"?
  • Axel Kohlmeyer (Mon Jan 05 2009 - 10:44:03 CST)
  • Maxim Paliy (Mon Jan 05 2009 - 10:00:20 CST)
• list of residue contacts
  • Alison Grinthal (Wed Sep 23 2009 - 15:02:23 CDT)
• list structure in measure cluster output
  • Bennion, Brian (Fri Jul 22 2016 - 11:25:50 CDT)
• Listing solvent accessible surface area per residue
  • Diego Gomes (Fri Dec 09 2022 - 14:14:44 CST)
  • Bill McIntyre (Sat Nov 19 2022 - 13:55:14 CST)
• Little problem with VolumeSlice
  • John Stone (Thu Jun 03 2004 - 15:28:50 CDT)
  • Simon Latapie (Thu Jun 03 2004 - 09:16:02 CDT)
• Load
  • Axel Kohlmeyer (Thu Aug 17 2006 - 14:12:56 CDT)
  • John Stone (Thu Aug 17 2006 - 14:04:21 CDT)
  • angel (Thu Aug 17 2006 - 13:14:06 CDT)
• Load a molecule in a function without output and slow Tcl gui console
  • John Stone (Wed Feb 27 2013 - 16:05:25 CST)
  • Maximilian Ebert (Wed Feb 27 2013 - 15:59:32 CST)
  • John Stone (Wed Feb 27 2013 - 10:34:02 CST)
  • Maximilian Ebert (Tue Feb 26 2013 - 16:35:54 CST)
  • John Stone (Tue Feb 26 2013 - 16:16:53 CST)
  • Maximilian Ebert (Tue Feb 26 2013 - 15:52:38 CST)
• Load and change representation?
  • Nicholas Musolino (Sun Apr 18 2010 - 12:13:12 CDT)
  • Fatemesadat Emami (Sat Apr 17 2010 - 16:51:53 CDT)
  • Fatemesadat Emami (Fri Apr 16 2010 - 23:37:32 CDT)
• load in multiple files once
  • Axel Kohlmeyer (Fri Feb 09 2007 - 16:30:00 CST)
  • Hai-Jun Su (Fri Feb 09 2007 - 15:53:18 CST)
• Load last frame of dcd on TKconsole (how?)
  • Peter Freddolino (Sun Dec 31 2006 - 08:15:01 CST)
  • hori koshii (Sat Dec 30 2006 - 19:20:00 CST)
• load molecule made by amber7.
  • Margaret Cheung (Tue Oct 15 2002 - 16:14:57 CDT)
  • John Stone (Tue Oct 15 2002 - 15:52:00 CDT)
  • Margaret Cheung (Fri Oct 11 2002 - 20:10:35 CDT)
• load MSMS face file into VMD
  • John Stone (Fri Aug 18 2006 - 16:24:55 CDT)
  • Yongcheng Zhou (Fri Aug 18 2006 - 15:54:13 CDT)
• load MSMS files into vmd
  • John Stone (Wed Nov 12 2008 - 13:51:23 CST)
  • John Stone (Wed Nov 12 2008 - 09:57:39 CST)
  • Prevost Martine (Fri Nov 07 2008 - 09:29:34 CST)
• load multiple CRD trajectories into a PDB file
  • John Stone (Thu Feb 23 2006 - 11:42:24 CST)
  • Thereza Soares (Thu Feb 23 2006 - 11:26:14 CST)
• Load multiple files
  • Bishop, Thomas C (Thu Feb 12 2009 - 11:18:57 CST)
  • Andres Morales N (Thu Feb 12 2009 - 08:59:39 CST)
  • John Stone (Thu Feb 12 2009 - 08:36:11 CST)
  • bo baker (Wed Feb 11 2009 - 22:43:35 CST)
• load multiple pdb files simultaneously
  • John Stone (Wed May 28 2003 - 19:28:34 CDT)
  • J. Zheng (Wed May 28 2003 - 18:29:13 CDT)
• load of information on B factor as independent file
  • Axel Kohlmeyer (Tue Dec 14 2010 - 02:33:54 CST)
  • Ajasja LjubetiÄ� (Tue Dec 14 2010 - 02:38:42 CST)
  • JhonY. I. (Tue Dec 14 2010 - 00:55:12 CST)
• load propka3.1 results error
  • Albert (Tue Mar 13 2012 - 00:35:36 CDT)
  • Albert (Mon Mar 12 2012 - 16:18:11 CDT)
  • John Stone (Mon Mar 12 2012 - 16:43:21 CDT)
  • John Stone (Mon Mar 12 2012 - 15:44:58 CDT)
  • John Stone (Mon Mar 12 2012 - 15:36:25 CDT)
  • Albert (Mon Mar 12 2012 - 15:40:12 CDT)
  • Albert (Mon Mar 12 2012 - 15:24:37 CDT)
• load speed of dcds
  • John Stone (Wed Jun 26 2013 - 11:45:46 CDT)
  • Thomas C. Bishop (Wed Jun 26 2013 - 11:19:15 CDT)
  • John Stone (Wed Jun 26 2013 - 09:26:04 CDT)
  • Jonathan Phillips (Wed Jun 26 2013 - 06:45:28 CDT)
  • Josh Vermaas (Tue Jun 25 2013 - 21:11:01 CDT)
  • Thomas C. Bishop (Tue Jun 25 2013 - 17:09:01 CDT)
  • Jonathan Phillips (Tue Jun 25 2013 - 15:09:53 CDT)
  • Thomas C. Bishop (Tue Jun 25 2013 - 12:22:23 CDT)
• load state and alignments
  • John Stone (Mon Jun 04 2007 - 14:41:21 CDT)
  • Stern, Julie (Mon Jun 04 2007 - 10:56:36 CDT)
• Load struture form memory
  • Axel Kohlmeyer (Mon Oct 12 2009 - 08:35:22 CDT)
  • Nuno Sousa Cerqueira (Mon Oct 12 2009 - 06:06:47 CDT)
• Load trajectory file in .sim format
  • Daniela Rivas (Tue Jun 16 2015 - 09:56:54 CDT)
  • John Stone (Tue Jun 16 2015 - 10:03:41 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2015 - 09:38:18 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2015 - 09:49:24 CDT)
  • Daniela Rivas (Tue Jun 16 2015 - 09:46:19 CDT)
  • Daniela Rivas (Tue Jun 16 2015 - 09:02:13 CDT)
• load two or more molecuoles at one time
  • Axel Kohlmeyer (Wed Nov 16 2005 - 16:21:35 CST)
  • baogen duan (Tue Nov 15 2005 - 21:42:53 CST)
• load-traj for three dimensions
  • Stefan Franzen (Fri Oct 01 2010 - 13:35:55 CDT)
• loading .gz trajectory files
  • Axel Kohlmeyer (Tue Jul 20 2004 - 17:12:47 CDT)
  • Vlad Cojocaru (Tue Jul 20 2004 - 12:56:38 CDT)
• Loading .vel file in VMD
  • Thomas C. Bishop (Fri Nov 21 2008 - 09:11:42 CST)
  • Axel Kohlmeyer (Fri Nov 21 2008 - 03:45:39 CST)
  • dipti lele (Thu Nov 20 2008 - 23:03:42 CST)
• Loading .vel files into vmd
  • John Stone (Wed Dec 02 2015 - 15:22:07 CST)
  • Maxim Belkin (Wed Dec 02 2015 - 12:24:05 CST)
  • Josh Vermaas (Wed Dec 02 2015 - 13:14:37 CST)
  • Ben Rousseau (Wed Dec 02 2015 - 11:42:00 CST)
• loading .xtc file
  • Christopher Gutnajer (Thu Feb 06 2014 - 22:37:14 CST)
  • Axel Kohlmeyer (Thu Feb 06 2014 - 21:17:52 CST)
  • Chetan Mahajan (Thu Feb 06 2014 - 20:18:25 CST)
• loading a new molecule without changing the view
  • Axel Kohlmeyer (Fri Jan 06 2006 - 14:05:40 CST)
  • Benjamin SCHWARZ (Fri Jan 06 2006 - 08:01:05 CST)
• Loading a PDB file with different atom counts in models
  • Adrian Kaats (Tue Mar 25 2008 - 07:41:38 CDT)
  • John Stone (Mon Mar 24 2008 - 23:31:20 CDT)
  • Adrian Kaats (Fri Mar 21 2008 - 09:19:35 CDT)
• Loading a pdb traj in VMD 1.8.4 beta 6
  • John Stone (Wed Dec 28 2005 - 14:38:11 CST)
  • h9826299_at_hkusua.hku.hk (Fri Dec 23 2005 - 09:18:30 CST)
• Loading a script
  • John Stone (Mon Aug 02 2004 - 17:48:04 CDT)
  • Prasad S Garimella (Mon Aug 02 2004 - 17:21:31 CDT)
• loading a several structures in the same time
  • Lela Vukovic (Wed Nov 18 2015 - 19:08:35 CST)
  • Josh Vermaas (Wed Nov 18 2015 - 18:09:19 CST)
  • Marta Wisniewska (Wed Nov 18 2015 - 16:46:01 CST)
• loading a trajectory using bigdcd and job launched on a PBS server
  • nsapay_at_ibcp.fr (Thu Feb 23 2006 - 16:59:07 CST)
  • John Stone (Thu Feb 23 2006 - 16:31:10 CST)
  • Nicolas Sapay (Thu Feb 23 2006 - 15:05:09 CST)
• loading a trajectory where particles aren't conservd
  • Axel Kohlmeyer (Wed Aug 31 2011 - 15:42:14 CDT)
  • Chris Knorowski (Wed Aug 31 2011 - 15:35:04 CDT)
  • Axel Kohlmeyer (Mon Aug 29 2011 - 17:26:22 CDT)
  • Chris Knorowski (Mon Aug 29 2011 - 16:35:28 CDT)
• Loading AMBER coordinates in VMD text mode
  • Prathit Chatterjee (Fri Aug 28 2020 - 00:39:33 CDT)
• loading amber file
  • Axel Kohlmeyer (Wed Jun 01 2005 - 01:32:33 CDT)
  • cbala_at_igib.res.in (Tue May 31 2005 - 01:05:45 CDT)
• loading amber topology
  • John Stone (Mon May 01 2006 - 14:10:18 CDT)
  • L. Michel Espinoza-Fonseca (Mon May 01 2006 - 13:43:12 CDT)
• Loading Chemical Component Dictionary File Crashes VMD
  • John Stone (Wed Apr 01 2020 - 00:42:28 CDT)
  • Mortimer Hemmit (Mon Mar 30 2020 - 14:42:05 CDT)
• loading compressed trajectory files
  • Vlad Cojocaru (Wed Jul 21 2004 - 05:49:17 CDT)
• loading crd files into VMD
  • John Stone (Wed Oct 15 2003 - 17:00:12 CDT)
  • Ioana Cozmuta (Wed Oct 15 2003 - 15:48:51 CDT)
  • Madhuri Agashe (Wed Oct 15 2003 - 14:21:21 CDT)
• Loading DCD files
  • John Stone (Wed Jan 17 2007 - 14:06:00 CST)
  • Vishal Kopardé (Wed Jan 17 2007 - 13:19:27 CST)
• Loading DCD Frames in Python
  • Cun Zhang (Sun Oct 03 2010 - 00:39:53 CDT)
  • David Huggins (Sat Oct 02 2010 - 05:16:05 CDT)
• loading electron density maps with a script
  • Irem Altan (Wed Feb 03 2016 - 16:02:48 CST)
• Loading files
  • John Stone (Wed Apr 07 2021 - 16:48:16 CDT)
  • Axel Kohlmeyer (Wed Apr 07 2021 - 16:34:57 CDT)
  • Ali Osman Acar (Wed Apr 07 2021 - 15:50:54 CDT)
  • Vermaas, Josh (Wed Apr 07 2021 - 15:23:52 CDT)
  • Axel Kohlmeyer (Wed Apr 07 2021 - 14:59:25 CDT)
  • Axel Kohlmeyer (Wed Apr 07 2021 - 15:02:28 CDT)
  • Ali Osman Acar (Wed Apr 07 2021 - 14:07:11 CDT)
  • Karteek K. Bejagam (Wed Apr 07 2021 - 12:55:49 CDT)
• Loading files all at once time to create movie
  • John Stone (Mon Nov 21 2005 - 14:59:51 CST)
  • Jindal Shah (Mon Nov 21 2005 - 12:43:48 CST)
• Loading files into already-running version of VMD from command prompt
  • Axel Kohlmeyer (Sat Aug 04 2007 - 16:04:31 CDT)
  • Victor Albert (Sat Aug 04 2007 - 16:04:16 CDT)
• Loading Gaussian Log File into Paratool
  • Kovács, Sándor Ádám (Mon Mar 15 2010 - 16:54:39 CDT)
  • Will Bricker (Sat Mar 13 2010 - 16:19:08 CST)
• loading gzipped trajectories into vmd
  • Axel Kohlmeyer (Tue Aug 29 2006 - 11:09:10 CDT)
  • Bogdan Costescu (Tue Aug 29 2006 - 09:38:42 CDT)
  • Vlad Cojocaru (Tue Aug 29 2006 - 08:24:03 CDT)
• Loading large trajectories using multiple threads/direct calls?
  • Bart Bruininks (Thu Dec 05 2019 - 17:06:26 CST)
  • John Stone (Thu Dec 05 2019 - 12:41:06 CST)
  • Vermaas, Joshua (Thu Dec 05 2019 - 12:12:45 CST)
  • Bart Bruininks (Thu Dec 05 2019 - 11:00:50 CST)
  • John Stone (Thu Dec 05 2019 - 10:07:50 CST)
  • Bart Bruininks (Thu Dec 05 2019 - 05:54:10 CST)
• loading limits
  • John Stone (Fri Nov 12 2004 - 10:36:00 CST)
  • Stern, Julie (Fri Nov 12 2004 - 07:52:24 CST)
• loading MD trajectories
  • John Stone (Tue Nov 04 2003 - 13:18:33 CST)
  • Luca Mollica (Mon Nov 03 2003 - 10:33:22 CST)
• loading molecule from command line
  • John Stone (Fri Jul 28 2000 - 15:11:02 CDT)
  • Mauricio Carrillo Tripp (Fri Jul 28 2000 - 14:42:56 CDT)
• loading molecules with increasing number of backbone atoms in VMD
  • John Stone (Wed Jan 17 2007 - 12:05:37 CST)
  • wurl (Tue Jan 16 2007 - 19:39:42 CST)
• Loading molfileplugins without modifying vmd install
  • Daniel Russel (Tue Feb 04 2014 - 10:13:28 CST)
  • John Stone (Mon Feb 03 2014 - 16:52:16 CST)
  • Daniel Russel (Mon Feb 03 2014 - 16:04:55 CST)
• loading movies of ply files
  • Axel Kohlmeyer (Thu Sep 02 2021 - 11:14:40 CDT)
  • Prof. Eddie (Thu Sep 02 2021 - 10:35:03 CDT)
• Loading multiple dcd files crashes VMD
  • Ajasja LjubetiÄ� (Thu Jan 11 2018 - 08:17:22 CST)
  • Peter Mawanga (Thu Jan 11 2018 - 07:46:33 CST)
• loading multiple different topologies into the same "molecule"
  • Chris Neale (Thu Jun 10 2021 - 18:58:54 CDT)
  • John Stone (Thu Jun 10 2021 - 15:47:29 CDT)
  • Chris Neale (Thu Jun 10 2021 - 13:51:13 CDT)
  • Axel Kohlmeyer (Thu Jun 10 2021 - 13:26:26 CDT)
  • Chris Neale (Thu Jun 10 2021 - 12:26:39 CDT)
  • Vermaas, Josh (Thu Jun 10 2021 - 09:19:11 CDT)
  • Raman Preet Singh (Thu Jun 10 2021 - 05:02:58 CDT)
  • Pawel Kedzierski (Thu Jun 10 2021 - 02:00:01 CDT)
  • Chris Neale (Wed Jun 09 2021 - 18:34:22 CDT)
• Loading multiple molecules in one step / "Apply changes automatically"
  • Chang, Christopher (Fri Oct 21 2005 - 11:15:40 CDT)
  • Michel Espinoza-Fonseca (Fri Oct 21 2005 - 10:46:46 CDT)
  • John Stone (Fri Oct 21 2005 - 10:32:20 CDT)
  • John Stone (Fri Oct 21 2005 - 10:28:00 CDT)
  • Michel Espinoza-Fonseca (Fri Oct 21 2005 - 10:29:40 CDT)
  • Björn Windshügel (Fri Oct 21 2005 - 09:54:59 CDT)
• Loading multiple PDB files in VMD 1.8
  • John Stone (Tue Dec 10 2002 - 18:02:39 CST)
• loading multiple pdbs as frames and the filenames
  • Ryan Woltz (Wed Jun 26 2024 - 18:41:17 CDT)
  • Ryan Woltz (Wed Jun 26 2024 - 18:29:44 CDT)
  • Diego Gomes (Wed Jun 26 2024 - 16:57:58 CDT)
  • Gianluca Interlandi (Wed Jun 26 2024 - 16:10:05 CDT)
  • Ryan Woltz (Wed Jun 26 2024 - 13:03:11 CDT)
• loading multiple trajectories with stride command in the terminal
  • Axel Kohlmeyer (Fri Jul 25 2014 - 10:42:57 CDT)
  • George Gerogiokas (Fri Jul 25 2014 - 08:27:36 CDT)
• Loading new molecule without changing view?
  • Axel Kohlmeyer (Tue Aug 06 2013 - 07:33:01 CDT)
  • Mayne, Christopher G (Tue Aug 06 2013 - 06:41:49 CDT)
  • Axel Kohlmeyer (Tue Aug 06 2013 - 06:09:49 CDT)
  • Marc van der Kamp (Tue Aug 06 2013 - 06:24:24 CDT)
  • Marc van der Kamp (Tue Aug 06 2013 - 04:49:07 CDT)
• Loading new molecules into VMD from an application
  • John Stone (Wed Feb 20 2002 - 20:48:56 CST)
  • Paul Grayson (Wed Feb 20 2002 - 19:59:54 CST)
  • jen ramus (Wed Feb 20 2002 - 17:25:44 CST)
• loading pdb files from multiple directories
  • Ajasja LjubetiÄ� (Fri Nov 29 2013 - 06:39:48 CST)
  • chandrakala gowda (Fri Nov 29 2013 - 06:14:51 CST)
  • Axel Kohlmeyer (Fri Nov 29 2013 - 05:59:58 CST)
  • chandrakala gowda (Fri Nov 29 2013 - 04:43:37 CST)
• loading PDB+PSF
  • John Stone (Tue Mar 16 2004 - 12:46:46 CST)
  • Brian Bennion (Tue Mar 16 2004 - 11:00:18 CST)
  • John Stone (Tue Mar 16 2004 - 09:55:55 CST)
  • Kurt Smith (Tue Mar 16 2004 - 03:01:10 CST)
• loading PDBs with multiple states having different numbers of atoms in VMD
  • PaweÅ‚ KÄ™dzierski (Wed Jul 14 2021 - 04:30:29 CDT)
  • Stefan Ivanov (Wed Jul 14 2021 - 02:00:24 CDT)
• Loading Problem
  • John Stone (Fri Jul 11 2008 - 10:54:39 CDT)
  • Axel Kohlmeyer (Thu Jul 03 2008 - 12:28:18 CDT)
  • hirdesh kumar (Thu Jul 03 2008 - 06:27:44 CDT)
• loading python
  • Axel Kohlmeyer (Fri Oct 10 2008 - 11:37:28 CDT)
  • Ryan Pavlovicz (Thu Oct 09 2008 - 22:10:44 CDT)
  • Axel Kohlmeyer (Thu Oct 09 2008 - 16:31:13 CDT)
  • Ryan Pavlovicz (Thu Oct 09 2008 - 15:21:15 CDT)
• loading saved state from command line
  • Ajasja LjubetiÄ� (Tue Jul 26 2011 - 01:47:56 CDT)
  • Erik Nordgren (Mon Jul 25 2011 - 19:28:30 CDT)
  • Erik Nordgren (Mon Jul 25 2011 - 19:12:03 CDT)
• Loading structures into sequence alignment extension?
  • Elijah Roberts (Mon Feb 13 2006 - 14:03:28 CST)
  • Francis Reyes (Mon Feb 13 2006 - 11:31:40 CST)
• loading trajectory
  • Axel Kohlmeyer (Tue Oct 22 2013 - 05:32:03 CDT)
  • Ramin Ekhteiari (Tue Oct 22 2013 - 04:24:26 CDT)
• loading trajectory file
  • John Stone (Mon Aug 07 2006 - 11:46:34 CDT)
  • Arturas Ziemys (Mon Aug 07 2006 - 11:38:34 CDT)
• Loading trajectory frames - bug ? Tcl-equivalent ?
  • John Stone (Fri Mar 15 2002 - 20:01:41 CST)
  • Marc Baaden (Fri Mar 15 2002 - 06:27:54 CST)
• Loading trajectory into Multiseq
  • John Stone (Mon Oct 26 2009 - 10:22:21 CDT)
  • stephane acoca (Fri Oct 23 2009 - 18:07:02 CDT)
• loading trj file
  • John Stone (Fri Sep 12 2003 - 15:16:48 CDT)
  • Ioana Cozmuta (Fri Sep 12 2003 - 13:58:28 CDT)
  • Brian Bennion (Fri Sep 12 2003 - 09:59:35 CDT)
  • Ioana Cozmuta (Thu Sep 11 2003 - 18:06:47 CDT)
• loading two dcd files in VMD
  • Luis Gracia (Mon Apr 18 2005 - 13:47:19 CDT)
  • Jorge Pikunic (Mon Apr 18 2005 - 10:40:51 CDT)
• Loading up PDB files in absolute coordinates
  • Brian Bennion (Fri Jun 22 2007 - 15:34:28 CDT)
  • John Stone (Fri Jun 22 2007 - 15:01:26 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 15:04:24 CDT)
  • John Stone (Fri Jun 22 2007 - 14:38:40 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 14:38:42 CDT)
  • Giovanni Bellesia (Fri Jun 22 2007 - 14:24:11 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 14:26:12 CDT)
  • John Stone (Fri Jun 22 2007 - 13:52:21 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 13:50:59 CDT)
  • John Stone (Fri Jun 22 2007 - 13:24:30 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 13:10:06 CDT)
• loading X-PLOR grids created with ptraj
  • John Stone (Fri Jan 20 2006 - 10:05:01 CST)
  • Vlad Cojocaru (Fri Jan 20 2006 - 03:59:35 CST)
• Loading XYZ trajectory file
  • John Stone (Tue Dec 10 2002 - 12:39:23 CST)
  • #WONG CHEE HOW# (Mon Dec 09 2002 - 19:17:00 CST)
• Local isosurface
  • Jérôme Claverie (Sun Oct 06 2019 - 04:32:47 CDT)
  • John Stone (Mon Jul 29 2019 - 13:38:13 CDT)
  • Ryan McGreevy (Mon Jul 29 2019 - 14:34:30 CDT)
  • Jérôme Claverie (Sat Jul 27 2019 - 13:02:14 CDT)
• local packing density around a chemical group (say, a methyl group or a side chain)
  • Leandro Martínez (Thu Apr 23 2009 - 12:22:38 CDT)
  • Krishnan, Marimuthu (Thu Apr 23 2009 - 12:11:07 CDT)
  • Axel Kohlmeyer (Thu Apr 23 2009 - 11:27:20 CDT)
  • Krishnan, Marimuthu (Thu Apr 23 2009 - 10:15:44 CDT)
• local urea concentration
  • L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 12:05:32 CST)
  • L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 11:17:14 CST)
• Localhost port 3000 error
  • João Ribeiro KS (Thu Mar 09 2017 - 07:29:49 CST)
  • Kanishk Jain (Wed Mar 08 2017 - 19:12:16 CST)
  • João Ribeiro KS (Wed Mar 08 2017 - 15:32:02 CST)
  • Axel Kohlmeyer (Wed Mar 08 2017 - 15:26:21 CST)
  • Kanishk Jain (Wed Mar 08 2017 - 14:48:18 CST)
  • João Ribeiro KS (Tue Mar 07 2017 - 17:25:26 CST)
  • Kanishk Jain (Tue Mar 07 2017 - 17:08:09 CST)
• Locating channel using hole
  • John Stone (Wed Mar 07 2007 - 13:26:41 CST)
  • daniel aguayo (Tue Mar 06 2007 - 14:28:24 CST)
  • John Stone (Tue Mar 06 2007 - 12:43:42 CST)
  • Subramanian Vaitheeswaran (Tue Mar 06 2007 - 12:11:23 CST)
• locating or creating a .vmdsensors file for windows VMD
  • John Stone (Wed Jul 14 2010 - 12:52:16 CDT)
  • Jeffrey Sanders (Wed Jul 14 2010 - 12:42:02 CDT)
• Location of 'mol bondsrecalc' in source code
  • Vermaas, Joshua (Sat Nov 12 2016 - 17:07:03 CST)
  • Dhritiman Talukdar (Sat Nov 12 2016 - 00:05:08 CST)
• location of light sources in vmd
  • Yogesh Sharma (Mon Jun 26 2023 - 01:58:45 CDT)
• Location of measure command script
  • Vermaas, Joshua (Wed Dec 20 2017 - 12:23:07 CST)
  • divyabharathi korlepara (Wed Dec 20 2017 - 03:43:12 CST)
• Locked files in Windows 7
  • Ignacio Fernández Galván (Thu Sep 22 2011 - 11:48:23 CDT)
  • Axel Kohlmeyer (Thu Sep 22 2011 - 07:49:47 CDT)
  • Ajasja LjubetiÄ� (Thu Sep 22 2011 - 07:17:55 CDT)
  • Ignacio Fernández Galván (Thu Sep 22 2011 - 06:08:13 CDT)
• Loevyou
  • gumbart_at_ks.uiuc.edu (Thu Jul 23 2009 - 16:55:17 CDT)
• log colorscale
  • Tristan Croll (Mon Oct 06 2014 - 03:12:31 CDT)
  • Axel Kohlmeyer (Sun Oct 05 2014 - 16:09:50 CDT)
  • Eric Smoll (Sun Oct 05 2014 - 15:28:58 CDT)
• logging in vmd
  • Axel Kohlmeyer (Tue Jul 30 2013 - 07:28:33 CDT)
  • Verwandlung Die (Tue Jul 30 2013 - 06:18:08 CDT)
  • Axel Kohlmeyer (Mon Jul 15 2013 - 01:31:47 CDT)
  • Axel Kohlmeyer (Sun Jul 14 2013 - 23:31:32 CDT)
  • Verwandlung Die (Sun Jul 14 2013 - 22:32:40 CDT)
• Long atom types from CGenFF causing charge problems
  • JC Gumbart (Tue Aug 09 2011 - 23:52:22 CDT)
  • John Stone (Tue Aug 09 2011 - 22:19:02 CDT)
  • JC Gumbart (Tue Aug 09 2011 - 17:42:32 CDT)
  • Anna Whitney (Tue Aug 09 2011 - 16:01:09 CDT)
• long bonds
  • Axel Kohlmeyer (Wed Sep 10 2008 - 10:23:18 CDT)
  • Marcelo Carignano (Wed Sep 10 2008 - 07:35:36 CDT)
• long bonds in surface structure is not shown in vmd !?
  • Axel Kohlmeyer (Sat Aug 11 2012 - 23:28:48 CDT)
  • Fatemesadat Emami (Fri Aug 10 2012 - 19:28:42 CDT)
• Long file paths in Mac OS 10.5.3
  • Kevin DeMarco (Wed Jun 04 2008 - 18:30:19 CDT)
  • John Stone (Wed Jun 04 2008 - 16:52:10 CDT)
  • Kevin DeMarco (Wed Jun 04 2008 - 16:43:32 CDT)
  • Axel Kohlmeyer (Wed Jun 04 2008 - 16:17:25 CDT)
  • John Stone (Wed Jun 04 2008 - 16:27:03 CDT)
  • Kevin DeMarco (Wed Jun 04 2008 - 15:24:51 CDT)
• Looking for assistance on vmd
  • Dr. Zaheer-ul-Haq Qasmi (Sat Apr 17 2004 - 11:45:53 CDT)
• looking for help to solve FATAL ERRORQ=BC=9A_Didn=27t_find_vdw_parameter_for_atom_type_C11?=
  • Josh Vermaas (Thu Mar 07 2024 - 13:18:13 CST)
• looking for help to solve FATAL ERROR： Didn't find vdw parameter for atom type C11
  • Yixin Chen (Tue Mar 12 2024 - 10:30:55 CDT)
  • Cindy Cregier (Mon Mar 11 2024 - 20:03:24 CDT)
  • Vermaas, Josh (Wed Mar 06 2024 - 09:36:55 CST)
  • Yixin Chen (Wed Mar 06 2024 - 08:12:31 CST)
• Looking for nice example images for VMD 1.9.1 release page...
  • John Stone (Fri Jan 27 2012 - 17:10:57 CST)
  • Toni Giorgino (Fri Jan 27 2012 - 16:38:04 CST)
  • John Stone (Wed Jan 25 2012 - 14:29:39 CST)
• looking for VMD draw scripts.
  • Jan Saam (Mon Sep 04 2006 - 13:20:08 CDT)
  • Jan Saam (Fri Sep 01 2006 - 17:11:55 CDT)
  • John Stone (Fri Sep 01 2006 - 17:03:37 CDT)
  • Axel Kohlmeyer (Fri Sep 01 2006 - 16:52:51 CDT)
  • Jan Saam (Fri Sep 01 2006 - 16:43:06 CDT)
  • John Stone (Fri Sep 01 2006 - 16:07:38 CDT)
  • Jan Saam (Fri Sep 01 2006 - 15:59:13 CDT)
  • Axel Kohlmeyer (Fri Sep 01 2006 - 15:34:59 CDT)
• Looking for x86 Mac testers...
  • John Stone (Fri Feb 03 2006 - 19:55:57 CST)
• Loop for
  • Axel Kohlmeyer (Thu May 10 2012 - 22:06:41 CDT)
  • Bennion, Brian (Thu May 10 2012 - 21:17:27 CDT)
  • Axel Kohlmeyer (Thu May 10 2012 - 20:00:51 CDT)
  • Andrés Morales (Thu May 10 2012 - 18:40:58 CDT)
• loop in loop
  • lily jin (Thu May 03 2007 - 18:41:04 CDT)
• loop in loop - found it
  • lily jin (Thu May 03 2007 - 18:49:47 CDT)
• Loop through atoms in a molecule
  • John Stone (Tue Jul 31 2012 - 11:57:29 CDT)
  • Gamot, Ritchie (Tue Jul 31 2012 - 06:51:52 CDT)
• loosing color when rendering molecular surface in VMD
  • Schreiner Eduard (Wed Jan 14 2009 - 20:58:22 CST)
  • John Stone (Wed Jan 14 2009 - 20:50:03 CST)
  • Michael Klein (Wed Jan 14 2009 - 20:17:23 CST)
• Losing atoms while solvating
  • Rajat Chakraborty (Mon Oct 10 2022 - 13:06:00 CDT)
• Loss of VDW upon rendering with POV3
  • John Stone (Wed Sep 08 2010 - 16:08:05 CDT)
  • John Stone (Wed Sep 08 2010 - 14:26:11 CDT)
  • Stefan Oliver (Wed Sep 08 2010 - 14:10:34 CDT)
• Lovyeou
  • gumbart_at_ks.uiuc.edu (Fri Jul 24 2009 - 09:31:56 CDT)
• lowest energy structure
  • Jorgen Simonsen (Mon Jul 19 2010 - 22:52:59 CDT)
• Luxurious costume repl1ca w4tches at lowest prices
  • Marvin Allen (Sun Aug 19 2007 - 08:30:41 CDT)
• M1 Mac menu issues
  • Barry Isralewitz (Fri Jan 05 2024 - 16:29:08 CST)
  • Diego Gomes (Fri Jan 05 2024 - 15:04:59 CST)
  • Corey Taylor (Thu Dec 28 2023 - 01:51:07 CST)
  • Vermaas, Josh (Wed Dec 27 2023 - 12:48:58 CST)
  • Corey Taylor (Wed Dec 27 2023 - 05:22:48 CST)
• Ma Ming wants to stay in touch on LinkedIn
  • Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:21:55 CDT)
• Mac and cmd line
  • Jorgen Simonsen (Mon Aug 24 2009 - 17:50:49 CDT)
  • JT (Mon Aug 24 2009 - 17:27:44 CDT)
  • Ben Eisenbraun (Mon Aug 24 2009 - 15:50:58 CDT)
  • Robert Brunner (Mon Aug 24 2009 - 15:02:20 CDT)
  • Jorgen Simonsen (Mon Aug 24 2009 - 11:58:16 CDT)
• Mac issue
  • Michael Patzschke (Sat Apr 11 2015 - 07:52:35 CDT)
  • John Stone (Fri Apr 10 2015 - 16:06:02 CDT)
  • Michael Patzschke (Fri Feb 13 2015 - 21:02:28 CST)
  • John Stone (Fri Feb 13 2015 - 11:26:50 CST)
  • Michael Patzschke (Thu Feb 12 2015 - 10:48:30 CST)
  • John Stone (Thu Feb 12 2015 - 10:04:25 CST)
  • Michael Patzschke (Thu Feb 12 2015 - 09:08:12 CST)
• mac OS Bigsur version 11.6 intel netcdf extension
  • Sunidhi Lenka (Fri Oct 15 2021 - 13:47:32 CDT)
• Mac OS compilation? what could be going wrong?
  • FX (Wed Apr 11 2012 - 14:25:47 CDT)
  • John Stone (Wed Apr 11 2012 - 14:33:34 CDT)
  • John Stone (Wed Apr 11 2012 - 14:15:59 CDT)
  • FX (Wed Apr 11 2012 - 11:58:36 CDT)
  • FX (Wed Apr 11 2012 - 11:57:08 CDT)
  • John Stone (Wed Apr 11 2012 - 10:51:01 CDT)
  • FX (Tue Apr 10 2012 - 03:50:32 CDT)
  • FX (Mon Apr 09 2012 - 14:06:06 CDT)
  • John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
• Mac OS compilation… what could be going wrongQ?=
  • FX (Sun Apr 08 2012 - 12:03:42 CDT)
• Mac OS X -dispdev options
  • John Stone (Thu Sep 25 2003 - 11:25:57 CDT)
  • Tobias Mandrup Johansen (Thu Sep 25 2003 - 04:12:27 CDT)
• Mac OS X 64 bit Issues
  • Andrew Fenley (Tue Nov 15 2011 - 17:47:41 CST)
  • Andrew Fenley (Tue Nov 15 2011 - 15:00:56 CST)
• Mac OS X problems with 1.8.3
  • nicholas blake (Thu Mar 17 2005 - 13:27:03 CST)
  • John Stone (Thu Mar 17 2005 - 09:55:26 CST)
  • nicholas blake (Wed Mar 16 2005 - 17:25:10 CST)
• Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd
  • James Irving (Mon Jun 30 2008 - 18:10:13 CDT)
  • James Irving (Mon Jun 30 2008 - 20:03:44 CDT)
  • Kevin DeMarco (Mon Jun 30 2008 - 18:50:24 CDT)
  • Axel Kohlmeyer (Mon Jun 30 2008 - 13:17:20 CDT)
  • James Irving (Sun Jun 29 2008 - 21:14:14 CDT)
• Mac OSX TK console issues
  • John Stone (Fri Jun 15 2007 - 15:42:52 CDT)
  • Brian Kidd (Fri Jun 15 2007 - 14:57:16 CDT)
  • Marc Baaden (Fri Jun 15 2007 - 09:21:51 CDT)
• Mac OSX version
  • John Stone (Tue Jun 25 2002 - 12:49:54 CDT)
  • Chris Upton (Tue Jun 25 2002 - 12:18:47 CDT)
• Mac Stereo 3D Displays & Equipment
  • Jim Phillips (Wed Oct 19 2005 - 18:29:39 CDT)
• Mac Titanium video card
  • Christian Simon (Mon Jun 10 2002 - 07:45:42 CDT)
  • John Stone (Sat Jun 08 2002 - 23:45:47 CDT)
  • Christian Simon (Wed Jun 05 2002 - 17:06:20 CDT)
• mac tk widgets
  • John Stone (Mon Oct 12 2009 - 15:55:19 CDT)
  • Nuno Sousa Cerqueira (Mon Oct 12 2009 - 15:58:03 CDT)
  • Nuno Sousa Cerqueira (Sat Oct 10 2009 - 21:13:15 CDT)
• Macbook and VMD Tk windows
  • John Stone (Fri May 29 2009 - 09:17:20 CDT)
  • Axel Kohlmeyer (Fri May 29 2009 - 08:07:21 CDT)
  • madura_at_duq.edu (Fri May 29 2009 - 06:49:08 CDT)
• MacBookPro and VMD version
  • John Stone (Sun Apr 16 2006 - 02:14:50 CDT)
  • Christoph Weber (Wed Apr 05 2006 - 14:10:08 CDT)
  • John Stone (Tue Apr 04 2006 - 14:23:50 CDT)
  • ivana adamovic (Tue Apr 04 2006 - 13:39:38 CDT)
• MacOS 10.4 problems
  • John Stone (Fri Oct 28 2005 - 09:43:13 CDT)
  • Craig Maloney (Fri Oct 28 2005 - 00:13:25 CDT)
• macOS Catalina
  • John Stone (Mon Oct 14 2019 - 22:16:56 CDT)
  • Reza Esmaeeli (Sun Oct 06 2019 - 11:09:24 CDT)
• MacOS native version resource attach info...
  • John Stone (Tue Jun 25 2002 - 11:02:08 CDT)
  • tom keyes (Tue Jun 25 2002 - 10:44:22 CDT)
  • John Stone (Mon Jun 24 2002 - 11:46:10 CDT)
• MacOS VMD1.9.4.a55 crashes- malloc: can't allocate region
  • Subha Kalyaanamoorthy (Mon Oct 30 2023 - 11:01:09 CDT)
  • John Stone (Wed Nov 09 2022 - 19:36:57 CST)
  • Subha Kalyaanamoorthy (Wed Nov 09 2022 - 11:36:29 CST)
• MacOS X VMD 1.8 alpha 16 "bundle" test version...
  • John Stone (Tue Jul 09 2002 - 14:05:23 CDT)
  • Holger Frauenrath (Thu Jul 04 2002 - 11:11:11 CDT)
  • MengJuei Hsieh (Wed Jul 03 2002 - 17:22:36 CDT)
  • John Stone (Wed Jul 03 2002 - 14:47:59 CDT)
• MacOS X window resizing fix...
  • John Stone (Mon Nov 18 2002 - 00:21:53 CST)
• MacOS X Yosemite 10.2.2 workaround for people to try...
  • John Stone (Thu Apr 09 2015 - 21:16:22 CDT)
• macosx 10.6 compilation issue
  • John Stone (Tue May 08 2018 - 14:32:40 CDT)
  • andre padilla (Thu Apr 19 2018 - 07:23:47 CDT)
• MacOSX and the solvate package
  • John Stone (Fri Oct 11 2002 - 22:48:14 CDT)
  • Evan Thompson (Fri Oct 11 2002 - 20:02:59 CDT)
• MacOSX bundle
  • John Stone (Sat Jul 06 2002 - 18:08:10 CDT)
  • Chris Upton (Sat Jul 06 2002 - 00:16:13 CDT)
• MacOSX VMD errors.
  • John Stone (Wed Jun 18 2003 - 10:55:19 CDT)
  • Kelvin Chu (Wed Jun 18 2003 - 10:37:55 CDT)
• MacOSX VMD errors. (solved)
  • John Stone (Wed Jun 18 2003 - 12:57:00 CDT)
• Macromolecule?
  • John Stone (Tue Jul 09 2013 - 13:03:46 CDT)
  • Benjamin Cowen (Tue Jul 02 2013 - 18:38:55 CDT)
• macros and variables
  • John Stone (Thu Dec 01 2005 - 14:34:46 CST)
  • Anthony Cruz (Thu Dec 01 2005 - 15:09:07 CST)
• Maestro file export
  • Jacob Poehlsgaard (Wed Jan 13 2010 - 09:15:03 CST)
  • John Stone (Tue Jan 12 2010 - 16:46:07 CST)
  • Jacob Poehlsgaard (Mon Jan 11 2010 - 03:21:22 CST)
• maiil about installation of vmd1.9.3 from source code
  • Joaquim Rui de Castro Rodrigues (Fri Jul 13 2018 - 10:39:54 CDT)
  • subramanian vidhyasankar (Fri Jul 13 2018 - 09:47:28 CDT)
• mail about installation of vmd 1.9 in cluster
  • John Stone (Wed Jun 20 2018 - 14:51:37 CDT)
  • subramanian vidhyasankar (Mon Jun 18 2018 - 02:20:09 CDT)
• mail about renumbering of residues
  • John Stone (Mon Sep 24 2018 - 10:02:58 CDT)
  • Giacomo Fiorin (Mon Sep 24 2018 - 06:47:57 CDT)
  • subramanian vidhyasankar (Sat Sep 22 2018 - 08:08:18 CDT)
• Mail about TCL script
  • subramanian vidhyasankar (Sun Sep 23 2018 - 06:36:17 CDT)
• mail about visualization state
  • Karteek Kumar (Fri Apr 29 2016 - 03:43:00 CDT)
  • Axel Kohlmeyer (Fri Apr 29 2016 - 03:43:45 CDT)
  • subramanian vidhyasankar (Fri Apr 29 2016 - 03:20:03 CDT)
• mail about VMD installation
  • Giacomo Fiorin (Fri Dec 31 2021 - 14:55:05 CST)
  • Pacci Evaristo, Felipe Fabricio (Fri Dec 31 2021 - 14:00:29 CST)
  • vidhya sankar (Fri Dec 31 2021 - 08:29:44 CST)
• Mail reg compilation of vmd 1.9.3 plugin
  • Giacomo Fiorin (Sat Jul 28 2018 - 08:30:00 CDT)
  • subramanian vidhyasankar (Sat Jul 28 2018 - 03:10:19 CDT)
• Mail System Error - Returned Mail
  • The Post Office (Wed Jun 20 2007 - 12:17:09 CDT)
• Mailing List
  • John Hondroulis (Wed Jan 08 1997 - 14:30:26 CST)
• Mailing list for Postdoctoral opportunities in Simulations
  • Peter Mawanga (Tue Aug 20 2019 - 01:24:38 CDT)
• Mailing list problems
  • Axel Kohlmeyer (Wed Aug 24 2011 - 15:57:59 CDT)
  • John Stone (Wed Aug 24 2011 - 15:08:03 CDT)
  • Anna (Wed Aug 24 2011 - 14:53:46 CDT)
  • Anna (Wed Aug 24 2011 - 15:12:02 CDT)
• maillist
  • Justin Gullingsrud (Sun Jul 27 2003 - 23:58:21 CDT)
  • Vlad Cojocaru (Sun Jul 27 2003 - 14:34:03 CDT)
• Main menu not compiled?
  • Pieter van 't Hof (Fri Sep 04 2009 - 09:00:56 CDT)
  • John Stone (Fri Sep 04 2009 - 09:27:33 CDT)
• main menu rests to top molecule after each double click in a list of molecules
  • Vlad Cojocaru (Tue Aug 21 2012 - 10:14:38 CDT)
  • Vlad Cojocaru (Tue Aug 21 2012 - 10:17:12 CDT)
  • John Stone (Tue Aug 21 2012 - 10:22:05 CDT)
• Main window (button bars) does not start
  • John Stone (Tue May 14 2002 - 10:11:44 CDT)
  • Akemi Yagi (Tue May 14 2002 - 10:02:18 CDT)
• main window missing?
  • BIN ZHANG (Wed May 27 2009 - 16:36:07 CDT)
  • John Stone (Wed May 27 2009 - 16:00:55 CDT)
  • Axel Kohlmeyer (Wed May 27 2009 - 16:01:33 CDT)
  • John Stone (Wed May 27 2009 - 15:30:21 CDT)
  • BIN ZHANG (Wed May 27 2009 - 15:49:40 CDT)
  • BIN ZHANG (Wed May 27 2009 - 15:17:40 CDT)
• Main window off top of screen
  • John Stone (Fri Feb 01 2002 - 11:02:17 CST)
  • Keith Oxenrider (Fri Feb 01 2002 - 10:57:58 CST)
• Maintaining original coordinates from PDB ?
  • John Stone (Mon Nov 18 2002 - 09:54:24 CST)
  • Marc Baaden (Sun Nov 17 2002 - 14:52:15 CST)
• Make "Load all at once" the default? Adding representations?
  • Heather Mayes (Wed May 02 2012 - 15:50:28 CDT)
  • Axel Kohlmeyer (Tue May 01 2012 - 19:13:11 CDT)
  • Heather Mayes (Tue May 01 2012 - 17:18:41 CDT)
  • Axel Kohlmeyer (Tue May 01 2012 - 16:54:49 CDT)
  • Heather Mayes (Tue May 01 2012 - 15:45:39 CDT)
• make movie w/ VMD in SUSE environment
  • Axel Kohlmeyer (Thu Jul 16 2009 - 11:40:03 CDT)
  • Thomas C. Bishop (Thu Jul 16 2009 - 11:14:15 CDT)
  • John Stone (Thu Jul 16 2009 - 11:27:08 CDT)
  • Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
  • John Stone (Thu Jul 16 2009 - 11:00:29 CDT)
• make movies with user-defined script
  • lam nguyen (Tue Mar 13 2012 - 16:23:17 CDT)
  • lam nguyen (Mon Mar 12 2012 - 20:37:19 CDT)
  • John Stone (Mon Mar 12 2012 - 15:53:06 CDT)
  • lam nguyen (Sun Mar 11 2012 - 18:55:38 CDT)
  • John Stone (Fri Mar 09 2012 - 20:45:15 CST)
  • lam nguyen (Fri Mar 09 2012 - 19:57:53 CST)
  • Axel Kohlmeyer (Fri Mar 09 2012 - 19:35:32 CST)
  • lam nguyen (Fri Mar 09 2012 - 18:34:18 CST)
  • lam nguyen (Fri Mar 09 2012 - 17:31:35 CST)
  • John Stone (Fri Mar 09 2012 - 16:27:43 CST)
  • lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
  • John Stone (Thu Mar 08 2012 - 12:12:06 CST)
  • lam nguyen (Mon Mar 05 2012 - 12:49:00 CST)
• Make sure girls notice your package
  • petefred_at_ks.uiuc.edu (Sat Jul 04 2009 - 22:12:43 CDT)
• makefile not generated from configure
  • rossi_at_york.cuny.edu (Thu Aug 19 2004 - 14:12:29 CDT)
  • Brian Bennion (Thu Aug 19 2004 - 12:24:13 CDT)
  • rossi_at_york.cuny.edu (Wed Aug 18 2004 - 19:05:15 CDT)
• makemovie errors (povray) -- VMD 1.8.3 on MacOS 10.3.8
  • John Stone (Fri Apr 08 2005 - 14:38:30 CDT)
  • Suckjoon JUN (Fri Apr 08 2005 - 04:17:52 CDT)
  • John Stone (Thu Apr 07 2005 - 15:31:50 CDT)
  • Suckjoon JUN (Thu Apr 07 2005 - 15:00:51 CDT)
• making .psf file based on .gro or .pdb
  • John Stone (Tue Feb 17 2009 - 19:04:22 CST)
  • Hideya Nakamura (Tue Feb 17 2009 - 18:19:18 CST)
• making a movie
  • Axel Kohlmeyer (Tue Apr 26 2011 - 18:36:48 CDT)
  • Moeed (Tue Apr 26 2011 - 17:58:06 CDT)
  • John Stone (Tue Jun 20 2006 - 16:21:31 CDT)
  • Alexandr Isayev (Tue Jun 20 2006 - 13:07:45 CDT)
  • Karsten SUHRE (Tue Jun 20 2006 - 12:46:06 CDT)
  • Joanne Hanna (Tue Jun 20 2006 - 09:38:06 CDT)
  • Axel Kohlmeyer (Thu Oct 13 2005 - 10:49:25 CDT)
  • Hyonseok Hwang (Thu Oct 13 2005 - 00:13:21 CDT)
• making a movie in a tcl script using graphics commands
  • Axel Kohlmeyer (Thu Jan 28 2016 - 17:16:48 CST)
  • Nima Emadi (Thu Jan 28 2016 - 15:37:23 CST)
  • Nima Emadi (Thu Jan 28 2016 - 14:50:50 CST)
  • Josh Vermaas (Thu Jan 28 2016 - 14:52:33 CST)
  • Nima Emadi (Thu Jan 28 2016 - 14:10:33 CST)
• making a movie of a atomselection of a very large trajectory
  • Monika Madhavi (Tue Mar 29 2016 - 21:42:41 CDT)
• making a movie of an unusual trajectory
  • Edward Lyman (Fri Jul 16 2010 - 13:09:09 CDT)
  • Axel Kohlmeyer (Fri Jul 16 2010 - 13:05:49 CDT)
  • Axel Kohlmeyer (Fri Jul 16 2010 - 12:47:26 CDT)
  • Edward Lyman (Fri Jul 16 2010 - 12:34:06 CDT)
  • John Stone (Fri Jul 16 2010 - 12:23:01 CDT)
  • Edward Lyman (Fri Jul 16 2010 - 11:54:47 CDT)
• making a movie of multiple molecules
  • Vermaas, Joshua (Wed Apr 18 2018 - 11:33:52 CDT)
  • Sahithya Iyer (Wed Apr 18 2018 - 08:50:54 CDT)
• making a movie of trajectory file animation
  • Barry Isralewitz (Thu Nov 08 2001 - 15:51:55 CST)
• making a movie with a serie of pdb's
  • Aitor Gonzalez (Fri Dec 08 2000 - 05:26:00 CST)
  • John Stone (Thu Dec 07 2000 - 09:51:36 CST)
  • Aitor Gonzalez (Thu Dec 07 2000 - 06:51:07 CST)
• Making a selection from another selection
  • Peter Freddolino (Tue Jul 17 2007 - 21:05:31 CDT)
  • Peter Freddolino (Tue Jul 17 2007 - 20:16:27 CDT)
  • Arneh Babakhani (Tue Jul 17 2007 - 20:41:29 CDT)
  • Peter Freddolino (Tue Jul 17 2007 - 20:14:40 CDT)
  • Arneh Babakhani (Tue Jul 17 2007 - 20:35:19 CDT)
  • Arneh Babakhani (Tue Jul 17 2007 - 20:02:49 CDT)
• Making a Skewed graphene sheet via VMD
  • Majid Shahbabaei (Mon Apr 04 2016 - 05:10:25 CDT)
• Making a trajectory movie from frames.
  • Axel Kohlmeyer (Tue Sep 24 2013 - 11:10:33 CDT)
  • Dawid das (Tue Sep 24 2013 - 11:04:38 CDT)
• Making a water-only sphere
  • S.K. Ghosh (Mon Jun 23 2008 - 14:21:08 CDT)
• Making an extensive search of PDB
  • Josh Vermaas (Tue Aug 19 2014 - 19:30:45 CDT)
  • Diego Granados (Tue Aug 19 2014 - 18:21:25 CDT)
• making animations
  • John Stone (Mon Jan 31 2005 - 13:21:05 CST)
  • Jay Lee (Sat Jan 29 2005 - 17:57:05 CST)
• making bonds myself
  • JC Gumbart (Tue Oct 25 2005 - 22:34:13 CDT)
  • Craig Maloney (Tue Oct 25 2005 - 20:05:04 CDT)
  • JC Gumbart (Tue Oct 25 2005 - 19:32:08 CDT)
  • Craig Maloney (Tue Oct 25 2005 - 19:16:32 CDT)
• making cluster for simulations
  • Gianluca Interlandi (Wed Jun 29 2016 - 13:41:11 CDT)
  • Ashar Malik (Wed Jun 29 2016 - 13:15:26 CDT)
  • Naeem Mahmood Ashraf (Wed Jun 29 2016 - 11:56:33 CDT)
• Making good trayectory movies
  • John Stone (Tue Aug 30 2005 - 13:36:37 CDT)
  • Leonardo Sepulveda Durán (Sun Aug 28 2005 - 18:44:52 CDT)
• Making high quality pictures: How to increase the number of samples?
  • John Stone (Sun Nov 01 2015 - 22:22:16 CST)
  • Lai, Jonathan (Sun Nov 01 2015 - 16:34:45 CST)
• Making interactive 3-D PDF files using VMD 1.8.6 beta 7
  • John Stone (Thu Feb 08 2007 - 18:11:53 CST)
• making movie
  • John Stone (Tue Aug 23 2011 - 10:36:05 CDT)
  • Moeed (Tue Aug 23 2011 - 09:57:32 CDT)
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:59:59 CDT)
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:28:57 CDT)
  • John Stone (Tue Aug 23 2011 - 08:59:36 CDT)
  • Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
  • John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
  • Moeed (Wed Aug 03 2011 - 20:56:47 CDT)
• making movie file
  • John Stone (Mon Feb 05 2007 - 23:05:00 CST)
  • Hai-Jun Su (Mon Feb 05 2007 - 22:41:11 CST)
• making movie from GROMACS trajectory
  • Arindam Ganguly (Thu Aug 17 2006 - 15:43:43 CDT)
  • John Stone (Wed Aug 09 2006 - 20:27:25 CDT)
  • Arindam Ganguly (Wed Aug 09 2006 - 18:05:36 CDT)
• making movie on Mac OSX
  • John Stone (Tue Nov 04 2003 - 13:16:25 CST)
  • taeho.kim_at_utoronto.ca (Mon Nov 03 2003 - 21:52:13 CST)
• making movie SGI
  • John Stone (Fri Feb 21 2003 - 15:37:25 CST)
  • Ioana Cozmuta (Fri Feb 21 2003 - 15:28:16 CST)
• making movie with move on each frame...
  • Ravinder Abrol (Thu Apr 13 2006 - 14:07:31 CDT)
  • John Stone (Thu Apr 13 2006 - 10:00:51 CDT)
  • Ravinder Abrol (Thu Apr 13 2006 - 06:32:50 CDT)
  • John Stone (Mon Apr 10 2006 - 11:33:37 CDT)
  • Ravinder Abrol (Fri Apr 07 2006 - 21:26:52 CDT)
• making movie with snapshot - bogus images
  • John Stone (Wed Sep 17 2003 - 16:20:20 CDT)
• Making movies
  • John Stone (Wed Jun 30 2004 - 13:29:10 CDT)
  • balas002_at_bama.ua.edu (Wed Jun 30 2004 - 12:26:26 CDT)
  • balas002_at_bama.ua.edu (Tue Jun 29 2004 - 14:21:22 CDT)
  • John Stone (Tue Jun 29 2004 - 13:24:16 CDT)
  • balas002_at_bama.ua.edu (Tue Jun 29 2004 - 10:37:40 CDT)
  • balas002_at_bama.ua.edu (Mon Jun 28 2004 - 15:48:17 CDT)
  • John Stone (Mon Jun 28 2004 - 15:32:30 CDT)
  • balas002_at_bama.ua.edu (Mon Jun 28 2004 - 14:40:14 CDT)
  • John Stone (Fri Jun 25 2004 - 17:54:33 CDT)
  • balas002_at_bama.ua.edu (Wed Jun 23 2004 - 10:54:32 CDT)
  • Karsten Suhre (Wed Jun 23 2004 - 03:07:31 CDT)
  • John Stone (Tue Jun 22 2004 - 16:49:18 CDT)
  • balas002_at_bama.ua.edu (Tue Jun 22 2004 - 16:15:27 CDT)
• making movies in vmd
  • Axel Kohlmeyer (Fri Feb 01 2013 - 02:46:25 CST)
  • Payman Pirzadeh (Fri Feb 01 2013 - 01:53:05 CST)
  • John Stone (Thu Dec 06 2007 - 12:34:37 CST)
  • Axel Kohlmeyer (Wed Dec 05 2007 - 19:45:54 CST)
  • Lili Peng (Wed Dec 05 2007 - 19:59:48 CST)
  • Lili Peng (Wed Dec 05 2007 - 19:27:32 CST)
  • Axel Kohlmeyer (Wed Dec 05 2007 - 19:16:40 CST)
  • Lili Peng (Wed Dec 05 2007 - 18:32:44 CST)
• Making movies in VMD (UNCLASSIFIED)
  • John Stone (Thu Dec 06 2007 - 16:11:00 CST)
  • Balu, Radhakrishnan (Cont, ARL/WMRD) (Thu Dec 06 2007 - 15:28:03 CST)
• Making movies of trajectories
  • John Stone (Thu Aug 30 2001 - 21:49:52 CDT)
  • Troy Wymore (Thu Aug 23 2001 - 13:14:34 CDT)
• Making only a subset of atoms transparent (or otherwise non-emphasized)
  • Axel Kohlmeyer (Tue May 15 2012 - 13:38:17 CDT)
  • Wang Yi (Tue May 15 2012 - 13:44:17 CDT)
  • Andrew DeYoung (Tue May 15 2012 - 12:49:22 CDT)
• making patch
  • rasti_at_ut.ac.ir (Tue Aug 27 2013 - 18:41:06 CDT)
• making ps files
  • Ioana Cozmuta (Fri Apr 09 2004 - 17:10:14 CDT)
  • T Luchko (Fri Apr 09 2004 - 14:57:43 CDT)
  • Jerry Ebalunode (Fri Apr 09 2004 - 11:19:08 CDT)
  • Mike McCallum (Thu Apr 08 2004 - 17:40:16 CDT)
  • John Stone (Thu Apr 08 2004 - 17:41:29 CDT)
  • Ioana Cozmuta (Thu Apr 08 2004 - 14:55:34 CDT)
• making psf files
  • M K (Wed Dec 03 2014 - 02:31:53 CST)
  • Zeinab Emami (Mon Oct 13 2014 - 12:59:36 CDT)
  • Josh Vermaas (Mon Oct 13 2014 - 09:23:13 CDT)
  • Mayne, Christopher G (Mon Oct 13 2014 - 09:11:08 CDT)
  • Zeinab Emami (Mon Oct 13 2014 - 04:00:14 CDT)
  • Richard Wood (Thu Oct 02 2014 - 13:03:28 CDT)
  • Zeinab Emami (Thu Oct 02 2014 - 11:48:49 CDT)
  • Mayne, Christopher G (Thu Oct 02 2014 - 11:03:28 CDT)
  • Mayne, Christopher G (Wed Oct 01 2014 - 09:51:19 CDT)
  • M Karim (Wed Oct 01 2014 - 07:53:14 CDT)
  • John Stone (Wed Oct 01 2014 - 08:02:49 CDT)
• making self-adjustable high resolution images
  • Axel Kohlmeyer (Wed Jan 28 2015 - 11:34:59 CST)
  • John Stone (Wed Jan 28 2015 - 11:12:44 CST)
  • James Kress (Wed Jan 28 2015 - 10:46:09 CST)
  • John Stone (Wed Jan 28 2015 - 09:49:29 CST)
  • Ajasja LjubetiÄ� (Wed Jan 28 2015 - 07:56:14 CST)
  • Axel Kohlmeyer (Wed Jan 28 2015 - 07:13:19 CST)
  • M K (Wed Jan 28 2015 - 04:47:26 CST)
• making the Orient plugin available in VMD
  • John Stone (Fri Mar 29 2013 - 10:41:07 CDT)
  • Research Jubilant (Tue Mar 26 2013 - 17:30:20 CDT)
• making time lapse video
  • Josh Vermaas (Fri Feb 15 2013 - 09:03:28 CST)
  • Do Yong Kim (Thu Feb 14 2013 - 15:06:06 CST)
• Making trajectory movie last longer.
  • Josh Vermaas (Wed Sep 03 2014 - 13:50:03 CDT)
  • Richard Wood (Wed Sep 03 2014 - 10:42:24 CDT)
  • Axel Kohlmeyer (Wed Sep 03 2014 - 09:25:13 CDT)
  • andrea (Wed Sep 03 2014 - 09:38:21 CDT)
  • Dawid das (Wed Sep 03 2014 - 08:33:37 CDT)
• Making UIobjects
  • Justin Gullingsrud (Thu Oct 25 2001 - 11:46:02 CDT)
  • B. Bennion (Thu Oct 25 2001 - 11:13:27 CDT)
• Making VMD movies
  • John Stone (Mon Feb 10 2003 - 12:22:39 CST)
  • Sanjeev B.S. (Mon Feb 10 2003 - 00:34:58 CST)
  • John Stone (Sun Feb 09 2003 - 23:33:23 CST)
  • Sanjeev B.S. (Sun Feb 09 2003 - 23:41:57 CST)
  • John Stone (Sun Feb 09 2003 - 23:05:20 CST)
  • Sanjeev B.S. (Sun Feb 09 2003 - 23:06:00 CST)
• MANDRAKE and VMD
  • Dmitry Kovalsky (Sun Jun 09 2002 - 03:35:45 CDT)
  • John Stone (Thu Jun 06 2002 - 09:55:07 CDT)
  • Dmitry Kovalsky (Thu Jun 06 2002 - 04:22:15 CDT)
• manipulate DLPOLY HISTORY files
  • John Stone (Mon Mar 06 2006 - 19:14:18 CST)
  • Javier Sacristan (Fri Mar 03 2006 - 15:43:37 CST)
• Manipulating dcd using script in VMD
  • Axel Kohlmeyer (Tue Apr 28 2009 - 08:24:04 CDT)
  • David Tanner (Tue Apr 28 2009 - 08:07:24 CDT)
  • Eduardo Cruz-Chu (Tue Apr 28 2009 - 01:55:25 CDT)
  • DimitryASuplatov (Tue Apr 28 2009 - 01:26:05 CDT)
• Manipulating the pdb file
  • M K (Wed Jan 20 2016 - 20:13:02 CST)
  • Ashar Malik (Wed Jan 20 2016 - 19:03:05 CST)
  • Mohsen Farshad (Wed Jan 20 2016 - 18:34:01 CST)
• Manipulating volumes in VMD
  • Bassam Haddad (Fri Dec 18 2020 - 13:21:00 CST)
  • John Stone (Fri Dec 18 2020 - 10:50:56 CST)
  • Bassam Haddad (Thu Dec 10 2020 - 16:18:23 CST)
• manipulation of atomselections
  • Josh Vermaas (Fri Jul 05 2013 - 17:12:43 CDT)
  • Bennion, Brian (Fri Jul 05 2013 - 17:27:28 CDT)
  • Axel Kohlmeyer (Fri Jul 05 2013 - 17:00:17 CDT)
  • Bennion, Brian (Fri Jul 05 2013 - 15:54:16 CDT)
• Manipulation on loaded MSMS surface
  • John Stone (Wed Aug 16 2006 - 23:26:54 CDT)
  • Arturas Ziemys (Tue Aug 15 2006 - 16:19:18 CDT)
• manually change secondary structure
  • John Stone (Fri Feb 21 2014 - 10:08:16 CST)
  • Beat Meier (Fri Feb 21 2014 - 07:46:02 CST)
• manually creating frames for VMD
  • Peter Freddolino (Wed Mar 14 2007 - 20:46:49 CDT)
  • yalini.pathy_at_yale.edu (Wed Mar 14 2007 - 17:11:58 CDT)
• manually defining bonds, setting atom colors
  • Axel Kohlmeyer (Thu Sep 14 2006 - 16:39:36 CDT)
  • Robert Hoy (Thu Sep 14 2006 - 16:10:52 CDT)
• manually generate PSF for small molecules
  • Adam Goler (Wed Apr 09 2014 - 20:04:56 CDT)
• Manunlly Assign Secondary Structure (May Not Be Realistic)
  • John C. H. Chao (Fri Jul 03 2009 - 04:42:10 CDT)
  • Axel Kohlmeyer (Thu Jul 02 2009 - 14:42:30 CDT)
  • John C. H. Chao (Thu Jul 02 2009 - 06:00:07 CDT)
• map files
  • John Stone (Wed Sep 21 2005 - 13:22:07 CDT)
  • Demetrios Braddock (Mon Sep 19 2005 - 19:41:39 CDT)
• mapping delphi potential maps on surfaces
  • John Stone (Thu Apr 08 2004 - 17:49:37 CDT)
  • John Stone (Thu Apr 08 2004 - 16:48:43 CDT)
  • Miguel Ortiz Lombardía (Thu Apr 08 2004 - 04:03:00 CDT)
• Mapping electronic potential to surface
  • Axel Kohlmeyer (Thu Feb 23 2006 - 22:47:20 CST)
  • John Stone (Fri Feb 24 2006 - 13:08:51 CST)
  • Xifang Wang (Thu Feb 23 2006 - 19:42:50 CST)
  • John Stone (Thu Feb 23 2006 - 11:48:47 CST)
  • Axel Kohlmeyer (Thu Feb 23 2006 - 00:55:53 CST)
  • Xifang Wang (Wed Feb 22 2006 - 21:36:16 CST)
• Mapping Gaussian electrostatic potential to electron density with cube files
  • John Stone (Mon Mar 17 2014 - 19:37:54 CDT)
  • Clark II, Jeffrey Keith (Fri Mar 14 2014 - 14:29:06 CDT)
  • David Slochower (Fri Nov 22 2013 - 17:46:21 CST)
  • John Stone (Fri Nov 22 2013 - 13:19:10 CST)
  • David Slochower (Fri Nov 22 2013 - 12:56:35 CST)
• mapping values on protein structure
  • Ashar Malik (Fri Apr 24 2020 - 11:49:33 CDT)
  • Aiswarya Pawar (Fri Apr 24 2020 - 11:23:53 CDT)
  • Josh Vermaas (Fri Apr 24 2020 - 08:37:53 CDT)
  • Aiswarya Pawar (Fri Apr 24 2020 - 02:47:37 CDT)
  • Ashar Malik (Fri Apr 24 2020 - 01:51:44 CDT)
  • Aiswarya Pawar (Fri Apr 24 2020 - 00:44:24 CDT)
• Maria Tziastoudi
  • matziast_at_med.uth.gr (Sat Aug 13 2011 - 05:29:29 CDT)
  • John Stone (Fri Aug 12 2011 - 09:39:51 CDT)
  • matziast_at_med.uth.gr (Fri Aug 12 2011 - 04:29:38 CDT)
• Martini RBCG
  • denilson_at_dqi.ufla.br (Wed Jan 16 2013 - 12:18:00 CST)
• mass weighted rms fit
  • Axel Kohlmeyer (Sun May 25 2008 - 11:20:56 CDT)
  • Dong Xu (Sun May 25 2008 - 11:14:47 CDT)
• Massive Inventory Clearance Sale on DTI 2D/3D 18.1" Flat Panel Displays!
  • Mike Doolin (Fri Mar 07 2003 - 18:43:27 CST)
• masure distance trajectory - delete variable
  • Balazs Jojart (Sun Jan 17 2010 - 13:20:20 CST)
  • Axel Kohlmeyer (Sun Jan 17 2010 - 11:54:03 CST)
  • Balazs Jojart (Sun Jan 17 2010 - 05:11:07 CST)
• Matal binding protein prediction 3d
  • Ajasja LjubetiÄ� (Tue Apr 15 2014 - 05:22:11 CDT)
  • Recep adýyaman (Tue Apr 15 2014 - 03:49:01 CDT)
• Matching electron density map and PDB
  • Keith Refson (Tue Dec 02 2003 - 03:43:41 CST)
  • John Stone (Mon Dec 01 2003 - 17:27:09 CST)
  • Keith Refson (Sat Nov 22 2003 - 11:16:30 CST)
• matching part of two models
  • Francesco Pietra (Mon Aug 26 2013 - 01:47:33 CDT)
• Matrix based intermediate rotations
  • Bogdan Costescu (Sat Sep 04 2010 - 05:35:41 CDT)
  • Eduardo (Fri Sep 03 2010 - 11:16:26 CDT)
  • John Stone (Fri Sep 03 2010 - 10:08:34 CDT)
  • Bogdan Costescu (Fri Sep 03 2010 - 05:50:40 CDT)
• Matrix in VMD
  • Jeffery (Mon Jan 31 2005 - 14:59:52 CST)
  • John Stone (Mon Jan 31 2005 - 14:18:17 CST)
  • Jeffery (Mon Jan 31 2005 - 14:18:02 CST)
• Matrix inverse
  • Axel Kohlmeyer (Tue Sep 05 2006 - 18:39:22 CDT)
  • Justin Gullingsrud (Tue Sep 05 2006 - 18:39:37 CDT)
  • Neelanjana Sengupta (Tue Sep 05 2006 - 18:26:31 CDT)
  • Axel Kohlmeyer (Tue Sep 05 2006 - 18:18:10 CDT)
  • Jan Saam (Tue Sep 05 2006 - 18:13:58 CDT)
  • Neelanjana Sengupta (Tue Sep 05 2006 - 17:38:23 CDT)
• matrix transforms of volume objects
  • John Stone (Fri Oct 14 2005 - 15:36:51 CDT)
  • Dan Strahs (Thu Oct 13 2005 - 20:18:06 CDT)
• Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations).
  • John Stone (Tue Nov 03 2009 - 16:18:43 CST)
  • Bob Johnson (Tue Nov 03 2009 - 14:49:29 CST)
• Max Characters in Writing Files
  • Michael LeVine (Wed Nov 17 2010 - 15:36:49 CST)
• max mice for IMD
  • John Stone (Tue Oct 09 2012 - 22:19:10 CDT)
  • Thomas C. Bishop (Tue Oct 09 2012 - 16:16:18 CDT)
• Maximum length of an extended peptide?
  • Axel Kohlmeyer (Tue Nov 15 2011 - 22:57:45 CST)
  • Boris Steipe (Tue Nov 15 2011 - 22:29:42 CST)
  • Anurag Sethi (Tue Nov 15 2011 - 21:57:44 CST)
  • Aaron Oakley (Tue Nov 15 2011 - 20:58:20 CST)
  • Chris Harrison (Tue Nov 15 2011 - 20:07:24 CST)
  • Axel Kohlmeyer (Tue Nov 15 2011 - 19:55:57 CST)
  • Aaron Oakley (Tue Nov 15 2011 - 17:53:14 CST)
• Maximum number of atoms/bonds
  • John Stone (Wed Jan 15 2003 - 10:33:03 CST)
  • #WONG CHEE HOW# (Tue Jan 14 2003 - 19:04:54 CST)
• maximum number of molecules
  • John Stone (Fri Jan 13 2006 - 13:36:39 CST)
  • James Rustad (Fri Jan 13 2006 - 13:27:06 CST)
• Maximum numbers of atoms
  • John Stone (Tue May 10 2005 - 22:44:16 CDT)
  • John Stone (Wed Apr 06 2005 - 11:18:24 CDT)
  • Nicolas CHARVIN (Wed Apr 06 2005 - 11:10:12 CDT)
  • John Stone (Tue Apr 05 2005 - 17:41:22 CDT)
  • John Stone (Tue Apr 05 2005 - 17:31:38 CDT)
  • Luis Rosales (Mon Apr 04 2005 - 16:22:28 CDT)
  • Nicolas CHARVIN (Mon Apr 04 2005 - 05:31:31 CDT)
  • John Stone (Wed Mar 30 2005 - 16:08:25 CST)
  • John Stone (Wed Mar 30 2005 - 10:03:16 CST)
  • Axel Kohlmeyer (Wed Mar 30 2005 - 05:06:49 CST)
  • Nicolas CHARVIN (Wed Mar 30 2005 - 01:54:37 CST)
• Maximum Stride Possible for Publishable Results
  • Giacomo Fiorin (Fri Oct 07 2022 - 16:19:31 CDT)
  • Axel Kohlmeyer (Fri Oct 07 2022 - 13:42:45 CDT)
  • Efthymiou, Christos (Fri Oct 07 2022 - 13:34:53 CDT)
  • Axel Kohlmeyer (Wed Oct 05 2022 - 14:42:34 CDT)
  • Efthymiou, Christos (Wed Oct 05 2022 - 13:30:00 CDT)
  • Giacomo Fiorin (Tue Oct 04 2022 - 13:31:28 CDT)
  • Efthymiou, Christos (Tue Oct 04 2022 - 12:43:17 CDT)
  • Ashar Malik (Mon Oct 03 2022 - 23:47:24 CDT)
  • Efthymiou, Christos (Mon Oct 03 2022 - 13:50:17 CDT)
• maximum trajectory size?
  • Axel Kohlmeyer (Thu Sep 16 2010 - 16:12:11 CDT)
  • Murpholino Peligro (Thu Sep 16 2010 - 15:19:58 CDT)
  • Joshua A. Anderson (Thu Sep 09 2010 - 06:50:43 CDT)
  • John Stone (Wed Sep 08 2010 - 19:58:19 CDT)
  • Patrick Burney (Wed Sep 08 2010 - 19:04:38 CDT)
• Maximum velocities
  • Eric H. Lee (Thu Jul 03 2008 - 16:17:54 CDT)
  • Alejandro Ortega (Thu Jul 03 2008 - 16:03:13 CDT)
• May 18th, Late abstract submission deadline for 3Dsig Structural Bioinformatics & Computational Biophysics
  • 3D SIG (Wed May 11 2011 - 16:57:22 CDT)
• May I use my own radii?
  • John Stone (Thu Mar 17 2005 - 21:37:13 CST)
  • Dallas Warren (Thu Mar 17 2005 - 19:00:58 CST)
  • Chunhu Tan (Thu Mar 17 2005 - 16:17:49 CST)
• MD movie making of fluent movements
  • Tabris Chun Chan (Fri Nov 04 2016 - 10:55:48 CDT)
  • Axel Kohlmeyer (Fri Nov 04 2016 - 10:35:30 CDT)
  • Vermaas, Joshua (Fri Nov 04 2016 - 09:43:31 CDT)
  • Ajasja LjubetiÄ� (Fri Nov 04 2016 - 05:54:32 CDT)
  • Kevin C Chan (Fri Nov 04 2016 - 05:26:21 CDT)
• md simulation of a protein and a ligand
  • Robert Kretschmer (Mon Dec 18 2006 - 12:55:20 CST)
• MD Simulations with GROMACS/NAMD/AMBER/VMD: Seasonal School in Stockholm 10-13 June
  • Joao Ribeiro (Tue Apr 30 2019 - 09:43:46 CDT)
• md trajectory: centering/h-bonb residence/coordination number
  • Eduard Schreiner (Mon Aug 21 2006 - 12:09:34 CDT)
  • John Stone (Mon Aug 21 2006 - 11:02:49 CDT)
  • Ivan Degtyarenko (Mon Aug 21 2006 - 08:26:44 CDT)
• MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14
  • Pietro Amodeo (Mon Nov 19 2012 - 20:18:27 CST)
  • John Stone (Mon Nov 19 2012 - 18:28:54 CST)
  • Pietro Amodeo (Mon Nov 19 2012 - 14:03:38 CST)
  • Pietro Amodeo (Mon Nov 19 2012 - 12:58:26 CST)
  • John Stone (Mon Nov 19 2012 - 11:25:48 CST)
  • Pietro Amodeo (Mon Nov 19 2012 - 10:25:33 CST)
  • John Stone (Sun Nov 18 2012 - 22:25:27 CST)
  • Pietro Amodeo (Fri Nov 16 2012 - 13:44:51 CST)
• MD Videos and fixing the view into a certain perspective
  • Lohry, David Patrick (Thu Apr 18 2024 - 12:14:52 CDT)
  • Josh Vermaas (Thu Apr 18 2024 - 12:05:24 CDT)
  • Lohry, David Patrick (Thu Apr 18 2024 - 10:53:24 CDT)
• MD: Water network analysis + visualization
  • sanjeev_at_mbu.iisc.ernet.in (Tue Mar 22 2005 - 08:02:07 CST)
  • Sanjeev B.S. (Fri Dec 17 2004 - 12:21:33 CST)
• MDAnalysis/VMD discrepancy
  • Giacomo Fiorin (Fri May 08 2020 - 17:56:57 CDT)
  • Alexandra Ringsby (Fri May 08 2020 - 16:44:31 CDT)
  • Josh Vermaas (Fri May 08 2020 - 16:02:50 CDT)
  • Alexandra Ringsby (Fri May 08 2020 - 15:22:28 CDT)
• mdf molfile plugin reader atom_type bug
  • Craig Knox (Tue Apr 19 2011 - 13:44:42 CDT)
  • John Stone (Mon Apr 18 2011 - 16:14:00 CDT)
  • Craig Knox (Mon Apr 18 2011 - 13:03:51 CDT)
• MDFF and implicit solvent
  • Gorka Lasso (Thu Sep 13 2012 - 03:19:42 CDT)
  • Gorka Lasso (Thu Sep 13 2012 - 02:40:08 CDT)
  • Chris Harrison (Wed Sep 12 2012 - 12:03:45 CDT)
  • Gorka Lasso (Wed Sep 12 2012 - 10:54:01 CDT)
• MDFF Check -ccc in different VMD versions
  • Ryan McGreevy (Wed Jan 17 2018 - 14:49:09 CST)
  • Ryan McGreevy (Fri Sep 15 2017 - 08:56:03 CDT)
  • Rune Thomas Kidmose (Fri Sep 15 2017 - 05:36:46 CDT)
• MDFF Check CCC problem
  • Ryan McGreevy (Fri Aug 31 2018 - 15:57:15 CDT)
  • Ryan McGreevy (Thu Aug 30 2018 - 10:20:49 CDT)
  • Rune Thomas Kidmose (Thu Aug 30 2018 - 03:13:28 CDT)
• MDFF chirality restrain error - measure imprp: empty atom index
  • Josh Vermaas (Mon Apr 06 2020 - 12:04:07 CDT)
  • Indrajit Deb (Wed Apr 01 2020 - 21:24:17 CDT)
  • Josh Vermaas (Wed Apr 01 2020 - 18:26:44 CDT)
  • Indrajit Deb (Wed Apr 01 2020 - 15:41:49 CDT)
• MDFF difficulties with mdff sim command
  • Ryan McGreevy (Wed May 29 2013 - 14:32:53 CDT)
  • Martin Jones (Wed May 29 2013 - 09:24:44 CDT)
  • Martin Jones (Fri May 24 2013 - 15:28:46 CDT)
  • Ryan McGreevy (Fri May 24 2013 - 15:10:27 CDT)
  • Martin Jones (Fri May 24 2013 - 14:57:25 CDT)
  • Ryan McGreevy (Fri May 24 2013 - 14:37:23 CDT)
  • Martin Jones (Fri May 24 2013 - 14:02:50 CDT)
  • Martin Jones (Fri May 24 2013 - 12:55:05 CDT)
• MDFF for multiple subunits
  • Ryan McGreevy (Wed Jul 23 2014 - 14:37:01 CDT)
  • Ryan McGreevy (Mon Jul 21 2014 - 14:49:55 CDT)
  • Anjela Manandhar (Mon Jul 21 2014 - 14:05:34 CDT)
• MDFF multiple PDB and PSF
  • JC Gumbart (Tue Mar 13 2018 - 17:04:54 CDT)
  • Rune Thomas Kidmose (Mon Mar 12 2018 - 11:49:41 CDT)
  • Ryan McGreevy (Mon Mar 12 2018 - 11:35:40 CDT)
  • Rune Thomas Kidmose (Mon Mar 12 2018 - 09:14:32 CDT)
• MDFF plug-in
  • A D (Fri Mar 05 2010 - 15:09:06 CST)
  • John Stone (Fri Mar 05 2010 - 15:12:10 CST)
• MDFF plugin calculating ccc
  • Ryan McGreevy (Mon Feb 23 2015 - 10:50:26 CST)
  • Kevin C Chan (Mon Feb 23 2015 - 03:59:03 CST)
  • Tristan Croll (Tue Feb 17 2015 - 16:13:02 CST)
  • Ryan McGreevy (Tue Feb 17 2015 - 11:24:58 CST)
  • John Stone (Tue Feb 17 2015 - 11:08:40 CST)
  • Kevin C Chan (Tue Feb 17 2015 - 11:04:40 CST)
  • Ryan McGreevy (Tue Feb 17 2015 - 10:19:48 CST)
  • Kevin C Chan (Mon Feb 16 2015 - 21:19:19 CST)
• MDFF problem
  • hamze rahimi (Tue Jul 19 2011 - 23:13:05 CDT)
• MDFF Query: how to convert XPLOR style density maps to DX or SITUS format
  • harish vashisth (Sat Jul 24 2010 - 11:12:27 CDT)
  • Edelmiro Moman (Sat Jul 24 2010 - 03:50:58 CDT)
  • harish vashisth (Fri Jul 23 2010 - 16:28:59 CDT)
• MDFF rotation
  • Ryan McGreevy (Mon Feb 26 2018 - 12:58:53 CST)
  • Ryan McGreevy (Mon Feb 26 2018 - 07:47:24 CST)
  • Rune Thomas Kidmose (Mon Feb 26 2018 - 03:48:08 CST)
• MDFF sim Problem
  • Leonardo Trabuco (Tue Jan 12 2010 - 17:00:00 CST)
  • John Stone (Mon Oct 26 2009 - 10:04:16 CDT)
  • Joshua Adelman (Sat Oct 24 2009 - 22:42:12 CDT)
  • John Stone (Mon Oct 19 2009 - 15:27:43 CDT)
  • Joshua Adelman (Sun Oct 18 2009 - 22:19:28 CDT)
  • Leonardo Trabuco (Sat Oct 17 2009 - 15:26:03 CDT)
  • Joshua Adelman (Fri Oct 16 2009 - 16:20:03 CDT)
• MDFF simulations
  • Luba Simhaev (Wed Aug 13 2014 - 00:41:04 CDT)
  • Ryan McGreevy (Tue Aug 12 2014 - 11:31:31 CDT)
  • Ryan McGreevy (Tue Aug 12 2014 - 10:17:34 CDT)
  • John Stone (Tue Aug 12 2014 - 10:01:41 CDT)
  • Tristan Croll (Tue Aug 12 2014 - 02:21:59 CDT)
  • Luba Simhaev (Tue Aug 12 2014 - 01:44:02 CDT)
  • Ryan McGreevy (Mon Aug 11 2014 - 21:09:34 CDT)
  • Tristan Croll (Mon Aug 11 2014 - 20:13:42 CDT)
  • Ryan McGreevy (Mon Aug 11 2014 - 12:24:26 CDT)
  • Luba Simhaev (Mon Aug 11 2014 - 04:22:31 CDT)
• MDFF through VMD Error FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT
  • Vermaas, Joshua (Fri Dec 21 2018 - 11:08:31 CST)
  • Ryan McGreevy (Fri Dec 21 2018 - 10:44:42 CST)
  • Somnath Dutta (Fri Dec 21 2018 - 09:39:40 CST)
• MDFF time line ccc score
  • Karol KASZUBA (Wed May 24 2017 - 15:47:20 CDT)
  • Ryan McGreevy (Wed May 24 2017 - 12:21:17 CDT)
  • Karol KASZUBA (Wed May 24 2017 - 12:10:40 CDT)
  • Ryan McGreevy (Wed May 24 2017 - 11:07:44 CDT)
  • Karol KASZUBA (Wed May 24 2017 - 10:51:52 CDT)
  • Karol KASZUBA (Wed May 24 2017 - 10:22:24 CDT)
  • Ryan McGreevy (Wed May 24 2017 - 10:03:52 CDT)
  • Ryan McGreevy (Wed May 24 2017 - 10:11:47 CDT)
  • Karol KASZUBA (Wed May 24 2017 - 10:09:08 CDT)
  • Karol KASZUBA (Wed May 24 2017 - 09:42:34 CDT)
  • Ryan McGreevy (Wed May 24 2017 - 09:16:19 CDT)
  • Karol KASZUBA (Wed May 24 2017 - 02:49:25 CDT)
• MDFF tutorial is not working
  • JC Gumbart (Mon Aug 24 2020 - 17:51:31 CDT)
  • Faisal, H M Nasrullah (Thu Aug 20 2020 - 09:09:24 CDT)
• MDFF using Martini
  • Ryan McGreevy (Mon Oct 24 2016 - 16:58:47 CDT)
  • Steven Neumann (Thu Oct 20 2016 - 21:07:37 CDT)
• MDFF with two symmetry groups
  • Benjamin.Haberl_at_physik.uni-muenchen.de (Tue May 17 2016 - 14:48:19 CDT)
• mdff: tutorial
  • Ryan McGreevy (Tue Jan 05 2016 - 00:47:27 CST)
  • Rose, Stuart Wallace (Mon Jan 04 2016 - 21:07:11 CST)
  • JC Gumbart (Mon Jan 04 2016 - 13:28:29 CST)
  • Rose, Stuart Wallace (Wed Dec 30 2015 - 13:18:03 CST)
  • Ryan McGreevy (Wed Dec 30 2015 - 12:35:30 CST)
  • Rose, Stuart Wallace (Wed Dec 30 2015 - 12:11:49 CST)
  • Ryan McGreevy (Wed Dec 30 2015 - 10:51:33 CST)
  • Rose, Stuart Wallace (Wed Dec 30 2015 - 09:55:01 CST)
• Meadionize
  • Mark Cunningham (Mon Feb 13 2012 - 09:15:18 CST)
  • lecan (Sun Feb 12 2012 - 21:05:15 CST)
• Mean atom position
  • John Stone (Mon Mar 08 2010 - 14:34:04 CST)
  • Katherine Parra (Mon Mar 08 2010 - 13:04:47 CST)
• Mean value of el. potential ?
  • Marek Maly (Thu May 26 2011 - 06:51:44 CDT)
  • Walter Rocchia (Thu May 26 2011 - 06:02:03 CDT)
  • Marek Maly (Thu May 26 2011 - 04:29:12 CDT)
  • Axel Kohlmeyer (Wed May 25 2011 - 19:51:55 CDT)
  • Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
• Meaning of computer graphic terms
  • Arham Amouie (Wed Apr 19 2017 - 12:42:41 CDT)
  • Arham Amouie (Wed Apr 19 2017 - 12:33:18 CDT)
• Measre dihedral angle of a certain type
  • Brian Radak (Wed Apr 10 2019 - 05:48:10 CDT)
  • Ashar Malik (Tue Apr 09 2019 - 20:52:47 CDT)
  • M K (Tue Apr 09 2019 - 19:46:23 CDT)
  • M K (Tue Apr 09 2019 - 19:19:18 CDT)
  • M K (Mon Mar 25 2019 - 00:42:37 CDT)
• measure angle between three points in space
  • Axel Kohlmeyer (Sun Sep 24 2006 - 10:40:06 CDT)
  • Ivan Degtyarenko (Sun Sep 24 2006 - 04:17:52 CDT)
• Measure atom position directly from index
  • Tristan Croll (Wed Dec 02 2015 - 20:05:31 CST)
  • Axel Kohlmeyer (Wed Dec 02 2015 - 19:56:14 CST)
  • Tristan Croll (Wed Dec 02 2015 - 19:20:53 CST)
• Measure atoms volume on VMD
  • John Stone (Thu Feb 15 2007 - 23:02:17 CST)
  • Cesar Luis Avila (Thu Feb 15 2007 - 15:27:53 CST)
• measure avpos
  • Luis Gracia (Mon May 15 2006 - 17:53:28 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Mon May 15 2006 - 14:43:28 CDT)
• measure binding site SASA
  • Dong Xu (Sun Feb 24 2008 - 12:38:49 CST)
• measure bond length?
  • Axel Kohlmeyer (Tue Sep 19 2006 - 12:03:23 CDT)
  • Ivan Degtyarenko (Tue Sep 19 2006 - 11:32:05 CDT)
• Measure Center Question
  • McGuire, Kelly (Sat Oct 20 2018 - 18:20:57 CDT)
• measure command in vmd
  • John Stone (Tue Jan 14 2014 - 09:47:50 CST)
  • ÂÀ¿µ½Ü (Fri Jan 03 2014 - 21:03:43 CST)
• measure command problem
  • Bernardo Sosa Padilla Araujo (Tue Mar 02 2010 - 14:15:42 CST)
  • Edelmiro Moman (Tue Mar 02 2010 - 13:53:08 CST)
  • Bernardo Sosa Padilla Araujo (Tue Mar 02 2010 - 12:33:57 CST)
  • Bernardo Sosa Padilla Araujo (Mon Mar 01 2010 - 21:44:09 CST)
• measure contact between com
  • Kevin Chan (Thu Jul 30 2015 - 20:47:09 CDT)
  • Kevin C Chan (Wed Jul 29 2015 - 23:05:58 CDT)
  • John Stone (Tue Jul 28 2015 - 23:22:34 CDT)
  • Kevin Chan (Mon Jul 27 2015 - 01:16:45 CDT)
• measure contacts not working as expected
  • M K (Sat Dec 12 2015 - 03:04:10 CST)
  • Josh Vermaas (Fri Dec 04 2015 - 09:04:34 CST)
  • Bryan Roessler (Thu Dec 03 2015 - 23:05:08 CST)
  • Peter Freddolino (Thu Dec 03 2015 - 21:14:13 CST)
  • Bryan Roessler (Thu Dec 03 2015 - 19:34:39 CST)
  • Bryan Roessler (Wed Dec 02 2015 - 16:51:04 CST)
• measure contacts script
  • John Stone (Sat Jan 12 2008 - 00:23:09 CST)
  • L. Michel Espinoza-Fonseca (Fri Jan 11 2008 - 05:57:10 CST)
• measure dihedral and improper angles
  • matziast_at_med.uth.gr (Tue Aug 09 2011 - 11:02:57 CDT)
• measure dihedral angle for all the loaded pdb files
  • chandrakala gowda (Fri Feb 07 2014 - 14:48:28 CST)
  • Axel Kohlmeyer (Fri Feb 07 2014 - 11:07:01 CST)
  • chandrakala gowda (Fri Feb 07 2014 - 10:08:55 CST)
  • Maxim Belkin (Fri Feb 07 2014 - 10:23:00 CST)
• measure dipole
  • Ajasja LjubetiÄ� (Wed Mar 30 2011 - 09:16:21 CDT)
  • Donovan B.T. (Wed Mar 30 2011 - 08:16:53 CDT)
  • Jernej Zidar (Tue Mar 29 2011 - 02:16:54 CDT)
  • John Stone (Mon Mar 28 2011 - 15:52:54 CDT)
  • Donovan B.T. (Mon Mar 28 2011 - 08:26:36 CDT)
  • Axel Kohlmeyer (Fri Mar 25 2011 - 09:14:47 CDT)
  • John Stone (Fri Mar 25 2011 - 09:11:24 CDT)
  • Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
  • PaweÅ‚ KÄ™dzierski (Fri Mar 25 2011 - 02:55:54 CDT)
  • Axel Kohlmeyer (Thu Mar 24 2011 - 13:53:10 CDT)
  • Donovan B.T. (Thu Mar 24 2011 - 13:07:28 CDT)
• measure distance
  • Jian Zou (Wed Apr 23 2008 - 09:45:58 CDT)
  • Axel Kohlmeyer (Wed Apr 23 2008 - 09:04:00 CDT)
  • politr_at_huji.ac.il (Wed Apr 23 2008 - 09:02:41 CDT)
• measure distance atom from plane
  • Ashar Malik (Tue Feb 05 2019 - 05:50:15 CST)
  • alberto (Tue Feb 05 2019 - 04:54:20 CST)
• Measure Distance Script Question
  • McGuire, Kelly (Fri Apr 27 2018 - 09:08:41 CDT)
  • McGuire, Kelly (Thu Apr 26 2018 - 23:27:47 CDT)
• measure energy
  • Gianluca Interlandi (Thu Apr 09 2015 - 23:51:42 CDT)
  • John Stone (Thu Apr 09 2015 - 21:02:03 CDT)
  • Gianluca Interlandi (Thu Apr 09 2015 - 17:46:00 CDT)
  • Gianluca Interlandi (Thu Apr 09 2015 - 17:39:49 CDT)
• measure energy elect vs. NAMDenergy
  • Axel Kohlmeyer (Tue Mar 08 2011 - 06:23:07 CST)
  • Sebastian Maximilian Wilhelm (Tue Mar 08 2011 - 05:21:10 CST)
• measure fit - wrong alignment
  • Axel Kohlmeyer (Thu May 26 2011 - 13:17:43 CDT)
  • Jérôme Hénin (Thu May 26 2011 - 07:43:12 CDT)
  • Eduardo Oliveira (Thu May 26 2011 - 05:56:40 CDT)
• measure fit alignment problems
  • Luis Gracia (Fri Nov 19 2004 - 15:03:37 CST)
  • John Stone (Fri Nov 19 2004 - 10:24:35 CST)
  • Gavin Murphy (Thu Nov 18 2004 - 22:37:35 CST)
• measure fit error??
  • Justin Gullingsrud (Sat Oct 09 2004 - 00:41:49 CDT)
  • Justin Gullingsrud (Fri Oct 08 2004 - 14:26:10 CDT)
  • mdcooper (Fri Oct 08 2004 - 17:35:37 CDT)
  • bora erdemli (Fri Oct 08 2004 - 12:29:22 CDT)
  • mashaojie163 (Fri Oct 08 2004 - 07:28:20 CDT)
  • mashaojie163 (Mon Sep 27 2004 - 23:12:22 CDT)
• measure fit rotation matrix convention
  • Josh Vermaas (Tue Feb 26 2013 - 09:34:01 CST)
  • Thomas C. Bishop (Tue Feb 26 2013 - 09:08:35 CST)
  • John Stone (Tue Feb 26 2013 - 08:26:17 CST)
  • Daniel Klose (Tue Feb 26 2013 - 04:43:23 CST)
  • John Stone (Mon Feb 25 2013 - 15:11:51 CST)
  • Daniel Klose (Fri Feb 22 2013 - 10:16:23 CST)
• measure fit sufficient for alignment prior to RMSD?
  • Paul R Brenner (Wed Oct 18 2006 - 10:08:49 CDT)
• measure forces applied in VMD
  • John Stone (Fri Jul 11 2008 - 10:48:11 CDT)
  • S.K. Ghosh (Tue Jul 08 2008 - 20:11:19 CDT)
• measure forces applied on VMD
  • S.K. Ghosh (Mon Jul 07 2008 - 16:18:17 CDT)
• measure gofr - how is g(r) normalised?
  • Axel Kohlmeyer (Mon Aug 25 2008 - 15:14:35 CDT)
  • Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
• measure gofr for finding hydration shells
  • Martin, Erik W (Mon Aug 19 2013 - 16:54:13 CDT)
• measure gofr non-orthogonal
  • MD Simulation (Wed May 27 2020 - 19:40:26 CDT)
• measure gofr script
  • Axel Kohlmeyer (Sat Apr 28 2012 - 12:33:09 CDT)
  • Emiliano Ippoliti (Sat Apr 28 2012 - 11:17:00 CDT)
  • Axel Kohlmeyer (Sat Apr 28 2012 - 10:11:58 CDT)
  • Emiliano Ippoliti (Sat Apr 28 2012 - 08:51:58 CDT)
• Measure gofr with large DCD files (Possibly use bigdcd ???)
  • Axel Kohlmeyer (Fri May 23 2008 - 18:59:33 CDT)
  • Christopher Gillespie (Fri May 23 2008 - 18:43:22 CDT)
• measure Hbond
  • Peter Freddolino (Thu May 03 2007 - 14:10:21 CDT)
  • lily jin (Thu May 03 2007 - 14:06:19 CDT)
• measure Hbond and orient (with vec {0 0 1}) of a selected molecule
  • JC Gumbart (Fri Apr 25 2014 - 15:27:30 CDT)
  • HongTham (Thu Apr 24 2014 - 19:51:51 CDT)
• measure hbonds
  • poker_at_physics.usyd.edu.au (Mon Dec 17 2007 - 19:03:50 CST)
  • Narender Singh Maan (Mon Dec 17 2007 - 14:52:39 CST)
  • lanhua (Fri May 04 2007 - 20:57:35 CDT)
  • syma khalid (Fri Jan 28 2005 - 07:09:27 CST)
  • bora erdemli (Fri Jan 28 2005 - 06:38:12 CST)
  • YOLANDA SMALL (Thu Jan 27 2005 - 18:41:27 CST)
• measure hbonds between protein and water - problem with periodic boundary conditions
  • Olaf Lenz (Thu Apr 17 2008 - 05:19:52 CDT)
  • Ana Vila Verde (Thu Apr 17 2008 - 05:54:50 CDT)
  • Axel Kohlmeyer (Thu Apr 17 2008 - 04:52:29 CDT)
  • Olaf Lenz (Thu Apr 17 2008 - 04:32:34 CDT)
  • Ana Vila Verde (Thu Apr 17 2008 - 02:54:08 CDT)
• Measure hbonds equivalent in Python interface?
  • Chang, Christopher (Wed Sep 10 2008 - 18:52:43 CDT)
• measure hbonds in VMD tcl script
  • Ana Celia Vila Verde (Fri Sep 19 2014 - 06:31:36 CDT)
  • Ana Celia Vila Verde (Fri Sep 19 2014 - 05:57:45 CDT)
  • Vasumathi Velachi (Fri Sep 19 2014 - 06:10:48 CDT)
  • Vasumathi Velachi (Fri Sep 19 2014 - 04:34:21 CDT)
• measure hbonds problem
  • politr_at_huji.ac.il (Sun Jun 01 2008 - 06:27:48 CDT)
  • Peter Freddolino (Fri May 30 2008 - 15:00:52 CDT)
  • politr_at_huji.ac.il (Fri May 30 2008 - 10:59:28 CDT)
• measure hbonds question
  • John Stone (Fri Jan 20 2006 - 16:43:20 CST)
  • Mgr. Lubos Vrbka (Fri Jan 20 2006 - 16:05:16 CST)
  • John Stone (Fri Jan 20 2006 - 15:31:28 CST)
  • Mgr. Lubos Vrbka (Fri Jan 20 2006 - 15:19:54 CST)
  • John Stone (Fri Jan 20 2006 - 15:02:37 CST)
  • Mgr. Lubos Vrbka (Wed Jan 18 2006 - 10:13:29 CST)
• Measure helicity at each frame
  • Roni Saiba (Sat Jun 19 2021 - 11:21:25 CDT)
  • Joaquim Rui de Castro Rodrigues (Sat Jun 19 2021 - 07:24:19 CDT)
  • Roni Saiba (Fri Jun 18 2021 - 21:09:24 CDT)
• measure imprp - input order of atoms
  • Jan Saam (Mon Aug 27 2007 - 03:30:41 CDT)
  • Johannes Müllegger (Fri Aug 24 2007 - 14:51:00 CDT)
• measure inertia (Eigenvalues and Eigenvectors)
  • Cardenas Lizana, Paul Antonio (Sat Mar 18 2017 - 13:30:07 CDT)
• Measure Radius of gyration
  • Eduard Schreiner (Mon Nov 15 2010 - 13:47:16 CST)
  • David Wedner (Mon Nov 15 2010 - 12:31:15 CST)
• measure rmsd with non-serial atom ordering between two selections
  • Patrick Charchar (Tue May 07 2019 - 20:16:32 CDT)
  • Vermaas, Joshua (Tue May 07 2019 - 19:11:08 CDT)
  • Vermaas, Joshua (Tue May 07 2019 - 19:17:57 CDT)
  • Patrick Charchar (Tue May 07 2019 - 17:54:41 CDT)
• measure rmsf
  • John Stone (Fri Jul 10 2009 - 13:31:54 CDT)
  • Alison Grinthal (Fri Jul 10 2009 - 13:10:14 CDT)
  • John Stone (Fri Jul 10 2009 - 10:42:33 CDT)
  • Alison Grinthal (Fri Jul 10 2009 - 08:31:26 CDT)
• measure rmsf - command (step argument)
  • Axel Kohlmeyer (Wed Jan 07 2009 - 10:44:18 CST)
  • Nadja Lederer (Wed Jan 07 2009 - 05:20:42 CST)
• measure rmsf - relative to what?
  • Giacomo Fiorin (Fri Dec 08 2017 - 07:16:59 CST)
  • Gudrun Gygli (Fri Dec 08 2017 - 06:54:33 CST)
• measure sasa
  • John Stone (Thu Mar 01 2012 - 10:06:21 CST)
  • Aaron Oakley (Wed Feb 29 2012 - 17:50:08 CST)
  • L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 17:48:12 CST)
• measure sasa algorithm?
  • Alvea Tasneem (Fri Jan 06 2023 - 11:25:23 CST)
• measure sasa and memory issue
  • Ackad, Edward (Mon May 23 2022 - 08:47:00 CDT)
  • Axel Kohlmeyer (Sun May 22 2022 - 12:24:04 CDT)
  • Ackad, Edward (Sun May 22 2022 - 10:54:55 CDT)
• measure sasa gives different results on different platforms
  • Jufang Shan (Thu May 08 2008 - 11:26:38 CDT)
  • John Stone (Thu May 08 2008 - 11:39:07 CDT)
  • John Stone (Wed May 07 2008 - 23:08:22 CDT)
  • Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
  • John Stone (Wed May 07 2008 - 16:59:55 CDT)
  • Jufang Shan (Wed May 07 2008 - 15:52:47 CDT)
• measure sasa not consistent
  • Gianluca Interlandi (Sat Apr 11 2015 - 15:16:39 CDT)
  • John Stone (Sat Apr 11 2015 - 15:20:01 CDT)
  • Gianluca Interlandi (Fri Apr 10 2015 - 00:10:07 CDT)
  • John Stone (Thu Apr 09 2015 - 21:06:27 CDT)
  • Gianluca Interlandi (Thu Apr 09 2015 - 17:34:43 CDT)
  • John Stone (Thu Apr 09 2015 - 17:17:24 CDT)
  • Gianluca Interlandi (Thu Apr 09 2015 - 16:52:40 CDT)
  • John Stone (Thu Apr 09 2015 - 16:33:37 CDT)
  • Gianluca Interlandi (Thu Apr 09 2015 - 16:17:18 CDT)
• measure sasa of a complex (CNT and protein)
  • Josh Vermaas (Thu Apr 16 2015 - 13:05:25 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Apr 16 2015 - 12:23:09 CDT)
  • Aryan Vahedi (Thu Apr 16 2015 - 10:58:38 CDT)
• measure surface usage
  • Vermaas, Joshua (Fri Feb 17 2017 - 18:38:01 CST)
  • Albers, Thomas (Fri Feb 17 2017 - 14:47:07 CST)
• measure the distance between center of molecules
  • Taufik Al-Sarraj (Tue Dec 23 2008 - 11:06:22 CST)
  • John Stone (Tue Dec 23 2008 - 11:12:38 CST)
• measure XYZ dimensions of a system
  • Axel Kohlmeyer (Wed Jan 24 2007 - 13:52:43 CST)
  • Akshay Patny (Wed Jan 24 2007 - 12:47:47 CST)
  • Axel Kohlmeyer (Wed Jan 24 2007 - 12:13:42 CST)
  • Akshay Patny (Wed Jan 24 2007 - 10:47:00 CST)
• measuring all the bonds and angles in /Tcl
  • hosein geraili (Tue Sep 25 2018 - 14:48:52 CDT)
• measuring angle between two domains of protein
  • Ashar Malik (Fri Sep 23 2016 - 06:40:58 CDT)
  • Felicia Jiang (Thu Sep 22 2016 - 17:18:19 CDT)
• Measuring angle between two domains?
  • Thomas C. Bishop (Thu Oct 03 2013 - 12:42:02 CDT)
  • Axel Kohlmeyer (Thu Oct 03 2013 - 11:37:49 CDT)
  • Peterson J (Thu Oct 03 2013 - 10:40:50 CDT)
• measuring angles between principal axes through multiple frames
  • Jeremiah Babcock (Tue Nov 05 2013 - 10:24:27 CST)
  • Joaquim Rui de Castro Rodrigues (Tue Nov 05 2013 - 03:46:17 CST)
  • Jeremiah Babcock (Mon Nov 04 2013 - 21:55:13 CST)
• Measuring cluster size
  • Madhavan Poyyapakkam (Wed Nov 22 2000 - 20:46:59 CST)
• Measuring distance during a trajectory
  • John Stone (Wed Oct 19 2005 - 16:55:17 CDT)
  • Per Jr. Greisen (Tue Oct 18 2005 - 14:59:42 CDT)
• Measuring distances between two sets of atoms in a dcd file
  • John Stone (Tue Oct 28 2003 - 14:18:12 CST)
  • Rudesh Toofanny (Tue Oct 28 2003 - 10:32:51 CST)
• measuring distances in vmd tkon
  • L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 13:35:33 CDT)
  • L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 13:46:21 CDT)
  • Simpson, Lisa M (Thu Mar 20 2008 - 12:38:36 CDT)
  • Ahmet Bakan (Thu May 06 2004 - 17:45:21 CDT)
  • Jerry Ebalunode (Thu May 06 2004 - 15:18:00 CDT)
• Measuring fit exclusively in 1 plane
  • John Stone (Thu May 01 2008 - 21:54:14 CDT)
  • Benjamin Hall (Thu May 01 2008 - 04:59:04 CDT)
• measuring h-bond distances
  • Axel Kohlmeyer (Sun Sep 12 2004 - 06:18:27 CDT)
  • Alicia Hopkins (Sat Sep 11 2004 - 12:01:58 CDT)
• measuring h-bonds
  • Marcos Sotomayor (Sun Sep 19 2004 - 14:08:04 CDT)
  • Alicia Hopkins (Sun Sep 19 2004 - 08:42:12 CDT)
  • Axel Kohlmeyer (Fri Sep 17 2004 - 01:16:45 CDT)
  • Alicia Hopkins (Thu Sep 16 2004 - 09:24:33 CDT)
• Measuring hbonds between selections from different molecules
  • Axel Kohlmeyer (Tue Jun 05 2007 - 20:09:49 CDT)
  • Arneh Babakhani (Tue Jun 05 2007 - 20:57:11 CDT)
  • Axel Kohlmeyer (Tue Jun 05 2007 - 19:41:24 CDT)
  • Arneh Babakhani (Tue Jun 05 2007 - 20:13:15 CDT)
• measuring rotation of protein about an axis
  • Blake Charlebois (Tue Jul 19 2005 - 11:28:59 CDT)
  • Vani Krishna (Tue Jul 19 2005 - 10:07:37 CDT)
• Measuring specific distances over a trajectory
  • John Stone (Wed Mar 14 2007 - 16:56:18 CDT)
  • Patrick Wintrode (Wed Mar 14 2007 - 16:06:30 CDT)
• Measuring the order parameter
  • Rawan Al Nsour (Tue Feb 19 2013 - 11:59:31 CST)
• measuring the orientation of a small a-helix
  • Raul Araya (Wed Apr 06 2011 - 16:23:29 CDT)
• measuring torsion angles
  • Christoph Schneider (Mon Jun 29 1998 - 03:08:48 CDT)
• Membrane and box with PBC
  • Ricardo Soares (Thu Feb 16 2012 - 12:28:06 CST)
• membrane builder
  • Axel Kohlmeyer (Tue May 13 2008 - 17:31:47 CDT)
  • ffavela_at_fis.cinvestav.mx (Tue May 13 2008 - 17:30:57 CDT)
• Membrane builder ?'s
  • John Stone (Tue Feb 24 2009 - 00:06:40 CST)
  • Christopher Hartshorn (Mon Feb 23 2009 - 13:09:16 CST)
• membrane generation question
  • Josh Vermaas (Tue Jun 03 2014 - 13:32:21 CDT)
  • Richard Wood (Tue Jun 03 2014 - 11:35:35 CDT)
• membrane in xplor format
  • Francesco Pietra (Fri Jul 12 2013 - 09:39:55 CDT)
  • Francesco Pietra (Fri Jul 12 2013 - 05:14:50 CDT)
• membrane lipid involvement of cholesterol
  • Richard Wood (Sat Jul 26 2014 - 09:07:57 CDT)
  • Richard Wood (Sat Jul 26 2014 - 06:26:59 CDT)
  • Ramin Ekhteiari (Sat Jul 26 2014 - 03:14:38 CDT)
• membrane loading
  • John Stone (Wed Apr 05 2006 - 17:36:06 CDT)
  • xiaoqin huang (Wed Apr 05 2006 - 17:05:39 CDT)
  • John Stone (Wed Apr 05 2006 - 14:32:38 CDT)
  • xiaoqin huang (Wed Apr 05 2006 - 14:25:12 CDT)
• membrane modeling
  • Eugene Leitl (Sat Mar 25 2000 - 19:03:56 CST)
  • Peter Tieleman (Sat Mar 25 2000 - 18:43:50 CST)
  • Kemikal Kid Kolby (Sat Mar 25 2000 - 18:17:52 CST)
• membrane plugin (IRIX version)
  • John Stone (Wed Jun 07 2006 - 14:42:43 CDT)
  • lothar esser (Wed Jun 07 2006 - 14:26:28 CDT)
• Membrane plugin error?
  • rwiese_at_unr.edu (Wed Jun 08 2005 - 14:04:49 CDT)
  • John Stone (Wed Jun 08 2005 - 13:24:00 CDT)
  • rwiese_at_unr.edu (Wed Jun 08 2005 - 12:37:14 CDT)
• Membrane PlugIn issue
  • Akshay Patny (Sat Sep 16 2006 - 14:20:23 CDT)
• membrane plugin | lipid structures
  • JC Gumbart (Sun Jul 27 2008 - 23:36:37 CDT)
  • Jufang Shan (Fri Jul 25 2008 - 11:50:18 CDT)
• Membrane POPC
  • Francesco Pietra (Sat Dec 01 2007 - 17:07:50 CST)
• membrane protein embedding
  • Ramin Ekhteiari (Wed Mar 13 2013 - 14:32:57 CDT)
• Membrane Protein Tutorial
  • John Stone (Mon Dec 06 2010 - 09:31:05 CST)
  • Bharat Kumar (Sun Dec 05 2010 - 22:40:28 CST)
  • Bharat Kumar (Sat Dec 04 2010 - 01:42:49 CST)
• Membrane Protein Tutorial Bug
  • John Stone (Thu Jul 05 2018 - 15:12:20 CDT)
  • João Ribeiro (Thu Jul 05 2018 - 13:01:24 CDT)
  • McGuire, Kelly (Thu Jul 05 2018 - 10:24:41 CDT)
• Membrane Proteins Tutorial
  • Marcos Sotomayor (Fri Feb 13 2009 - 16:25:15 CST)
• Membrane tutorial regarding
  • Vermaas, Joshua (Wed Mar 14 2018 - 12:00:01 CDT)
  • RAHUL SURESH (Wed Mar 14 2018 - 10:54:23 CDT)
• membrane_problem
  • lara lara (Wed Oct 06 2010 - 00:29:39 CDT)
• memorry problem
  • Axel Kohlmeyer (Fri May 02 2008 - 15:04:02 CDT)
  • Axel Kohlmeyer (Wed Apr 23 2008 - 06:58:42 CDT)
  • politr_at_huji.ac.il (Wed Apr 23 2008 - 06:48:53 CDT)
• memory allocation issue
  • Edward Lyman (Wed May 06 2009 - 13:37:04 CDT)
  • Leonardo Trabuco (Wed May 06 2009 - 13:48:12 CDT)
• Memory allocation problem
  • Axel Kohlmeyer (Mon Jun 15 2009 - 10:00:02 CDT)
  • Peter Freddolino (Mon Jun 15 2009 - 09:22:49 CDT)
  • kumar prashanth (Mon Jun 15 2009 - 04:06:49 CDT)
• memory issues
  • John Stone (Mon Nov 02 2009 - 13:50:12 CST)
  • Paymon Pirzadeh (Mon Nov 02 2009 - 12:02:14 CST)
• memory leak 1.8.7 and 1.9b1
  • Axel Kohlmeyer (Mon Feb 21 2011 - 10:10:41 CST)
  • John Stone (Mon Feb 21 2011 - 09:48:08 CST)
  • Tim Meyer (Mon Feb 21 2011 - 09:13:18 CST)
• memory leak found
  • Axel Kohlmeyer (Tue Dec 02 2008 - 12:58:25 CST)
  • Ondrej Marsalek (Tue Dec 02 2008 - 12:40:26 CST)
  • Ondrej Marsalek (Tue Dec 02 2008 - 12:19:51 CST)
  • Axel Kohlmeyer (Tue Dec 02 2008 - 11:23:28 CST)
  • John Stone (Tue Dec 02 2008 - 09:14:22 CST)
  • Ondrej Marsalek (Tue Dec 02 2008 - 09:08:09 CST)
• Memory leak using "moveby" command inside a loop
  • Justin Gullingsrud (Thu Apr 15 2004 - 13:22:08 CDT)
  • Artem Mamonov (Wed Apr 14 2004 - 21:34:20 CDT)
• Memory leak with "mol modselect" and index
  • John Stone (Sun Oct 17 2010 - 15:52:47 CDT)
  • TRINH Minh Hieu (Sun Oct 17 2010 - 13:43:40 CDT)
  • Axel Kohlmeyer (Sun Oct 17 2010 - 13:29:22 CDT)
  • TRINH Minh Hieu (Sat Oct 16 2010 - 20:11:16 CDT)
• Memory Pool Size - can I optimize this?
  • Chris Broomell (Tue Mar 31 2020 - 15:27:29 CDT)
  • Chris Broomell (Tue Mar 31 2020 - 15:21:49 CDT)
  • John Stone (Tue Mar 31 2020 - 14:46:29 CDT)
  • ccbroomell_at_gmail.com (Mon Mar 30 2020 - 18:26:00 CDT)
  • Giacomo Fiorin (Mon Mar 30 2020 - 16:51:00 CDT)
  • Chris Broomell (Mon Mar 30 2020 - 15:58:00 CDT)
  • ccbroomell_at_gmail.com (Mon Mar 30 2020 - 14:49:05 CDT)
  • John Stone (Mon Mar 30 2020 - 14:01:52 CDT)
  • Mortimer Hemmit (Mon Mar 30 2020 - 13:21:25 CDT)
  • Axel Kohlmeyer (Mon Mar 30 2020 - 12:38:51 CDT)
  • Axel Kohlmeyer (Mon Mar 30 2020 - 12:12:32 CDT)
  • ccbroomell_at_gmail.com (Mon Mar 30 2020 - 12:31:27 CDT)
  • Chris Broomell (Mon Mar 30 2020 - 10:55:08 CDT)
• memory problem p4_Globmemsize
  • John Stone (Wed Jun 08 2005 - 16:05:04 CDT)
  • shgnwgn_at_eden.rutgers.edu (Wed Jun 08 2005 - 14:50:48 CDT)
• Memory Problem with tcl/tk script...
  • Axel Kohlmeyer (Tue Jun 02 2009 - 09:27:22 CDT)
  • Alberto Sergio Garay (Tue Jun 02 2009 - 07:25:16 CDT)
• Memory Problem with tcl/tk script...(2)
  • Axel Kohlmeyer (Wed Jun 03 2009 - 13:57:40 CDT)
  • Robert Brunner (Wed Jun 03 2009 - 13:48:49 CDT)
  • Alberto Sergio Garay (Wed Jun 03 2009 - 12:54:53 CDT)
• Memory Problem with tcl/tk script...(3)
  • Alberto Sergio Garay (Wed Jun 03 2009 - 14:17:07 CDT)
• Memory Problem with tcl/tk script...(Solved!)
  • Alberto Sergio Garay (Thu Jun 04 2009 - 07:08:19 CDT)
• memory problems
  • Justin Gullingsrud (Sat Aug 25 2001 - 21:51:25 CDT)
  • Dr. Paul Fons (Sat Aug 25 2001 - 19:54:48 CDT)
• Memory problems using the "move" command inside a loop!
  • John Stone (Fri May 02 2003 - 15:30:39 CDT)
  • Joe Huang (Fri May 02 2003 - 16:23:54 CDT)
  • Justin Gullingsrud (Wed Apr 30 2003 - 17:56:32 CDT)
  • John Stone (Wed Apr 30 2003 - 10:05:19 CDT)
  • Thomas Hedegaard Pedersen (Wed Apr 30 2003 - 09:28:01 CDT)
• Memory problems with Multiseq
  • John Stone (Thu Mar 08 2007 - 17:38:50 CST)
  • Marcelo Puiatti (Thu Mar 08 2007 - 17:21:27 CST)
• Memory problems with TCL scripts in VMD.
  • Justin Gullingsrud (Fri Mar 21 2003 - 17:53:51 CST)
  • John Stone (Fri Mar 21 2003 - 16:36:02 CST)
  • Joe Huang (Thu Mar 20 2003 - 13:02:48 CST)
• Memory problems with XP
  • John Stone (Mon Apr 21 2003 - 11:31:59 CDT)
• memory sharing in VMD
  • Robin Betz (Fri Feb 10 2017 - 17:25:01 CST)
  • Karl Decker (Fri Feb 10 2017 - 15:51:02 CST)
  • Vermaas, Joshua (Fri Feb 10 2017 - 16:17:49 CST)
  • John Stone (Tue Feb 07 2017 - 16:02:12 CST)
  • Vermaas, Joshua (Tue Feb 07 2017 - 15:51:32 CST)
  • Karl Decker (Tue Feb 07 2017 - 14:13:06 CST)
  • John Stone (Tue Feb 07 2017 - 14:22:59 CST)
• Memory used by VMD is much less than installed
  • PaweÅ‚ KÄ™dzierski (Wed Mar 07 2012 - 08:15:54 CST)
  • Ajasja LjubetiÄ� (Wed Mar 07 2012 - 07:11:22 CST)
  • Axel Kohlmeyer (Wed Mar 07 2012 - 06:34:44 CST)
  • Meyer-Almes, Franz-Josef, Prof. Dr. (Wed Mar 07 2012 - 05:03:08 CST)
• Menu is missing?
  • John Stone (Tue Sep 24 2002 - 11:09:51 CDT)
  • Jeroen Akershoek (Tue Sep 24 2002 - 03:31:16 CDT)
• menus unresponsive in ubuntu 10.10
  • Andrew Jewett (Sun Oct 31 2010 - 18:55:33 CDT)
  • Axel Kohlmeyer (Sat Oct 30 2010 - 10:58:17 CDT)
  • Andrew Jewett (Sat Oct 30 2010 - 02:22:06 CDT)
  • John Stone (Fri Oct 29 2010 - 09:28:23 CDT)
  • Andrew Jewett (Thu Oct 28 2010 - 02:42:15 CDT)
• merge
  • John Stone (Mon Jan 03 2005 - 16:20:51 CST)
  • Osmany Guirola Cruz (Mon Jan 03 2005 - 11:26:46 CST)
• Merge frames of PDB asymmetric unit to biological assembly
  • John Stone (Mon Oct 18 2021 - 11:55:03 CDT)
  • Chris Taylor (Thu Oct 14 2021 - 14:21:39 CDT)
  • Chris Taylor (Tue Oct 12 2021 - 21:46:24 CDT)
  • Chris Taylor (Wed Oct 06 2021 - 21:02:58 CDT)
  • Axel Kohlmeyer (Tue Oct 05 2021 - 23:42:45 CDT)
  • Chris Taylor (Tue Oct 05 2021 - 22:10:14 CDT)
• merge pbd psf files (update)
  • Alessio Alexiadis (Wed Nov 07 2007 - 07:47:48 CST)
• merge pdb
  • Axel Kohlmeyer (Wed Feb 06 2008 - 10:41:43 CST)
  • Lucie Huynh (Wed Feb 06 2008 - 10:29:58 CST)
• Merge PDB files to create a single PDB and PSF file
  • Ern Seang Ong (Mon Sep 14 2015 - 02:10:22 CDT)
• Merge Protein/Small Molecule psf/pdb
  • Josh Vermaas (Mon Apr 08 2013 - 18:18:59 CDT)
  • Zachary E Tibbs (Mon Apr 08 2013 - 16:54:52 CDT)
• Merge psf and pdb
  • bo liu (Wed Sep 03 2008 - 00:17:13 CDT)
  • bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
  • Axel Kohlmeyer (Tue Sep 02 2008 - 10:46:07 CDT)
  • Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
  • max_at_liaad.up.pt (Tue Sep 02 2008 - 04:28:53 CDT)
• Merge Structur
  • Axel Kohlmeyer (Wed Jul 03 2013 - 10:01:48 CDT)
  • Christian Wohlschlager (Wed Jul 03 2013 - 08:52:00 CDT)
• merge structure : It is working
  • muniyamuthu.raviprasad_at_ndsu.edu (Tue Apr 27 2010 - 10:26:45 CDT)
• Merge Structure changes coordinates to 0
  • B (Wed Nov 11 2020 - 19:40:09 CST)
  • Raman Preet Singh (Wed Aug 12 2020 - 12:47:51 CDT)
  • Raman Preet Singh (Mon Aug 03 2020 - 01:58:25 CDT)
• merge structure of two pdb files
  • Marzieh Dehghan (Sun Jul 20 2014 - 15:31:26 CDT)
• Merge Structures Bug
  • Vermaas, Joshua (Mon Jul 09 2018 - 09:35:32 CDT)
  • McGuire, Kelly (Fri Jul 06 2018 - 16:34:43 CDT)
• Merge structures coordinate failure
  • Francesco Pietra (Sat Jul 27 2013 - 13:04:11 CDT)
• mergemols not combining topology information
  • Axel Kohlmeyer (Mon Sep 21 2015 - 08:20:25 CDT)
  • Frank Zack (Mon Sep 21 2015 - 07:06:02 CDT)
• MergeStructs Plugin in text mode
  • Alexandre Suman de Araujo (Fri Mar 12 2010 - 13:40:03 CST)
  • Robert Brunner (Fri Mar 12 2010 - 11:51:54 CST)
  • Axel Kohlmeyer (Fri Mar 12 2010 - 09:11:24 CST)
  • Alexandre Suman de Araujo (Thu Mar 11 2010 - 12:04:44 CST)
  • Axel Kohlmeyer (Wed Mar 10 2010 - 07:57:38 CST)
  • Alexandre Suman de Araujo (Wed Mar 10 2010 - 06:03:01 CST)
  • Axel Kohlmeyer (Tue Mar 09 2010 - 13:24:49 CST)
  • Alexandre Suman de Araujo (Tue Mar 09 2010 - 12:24:46 CST)
• merging atomselection
  • Tomek Wlodarski (Wed Mar 25 2009 - 17:56:49 CDT)
  • Axel Kohlmeyer (Wed Mar 25 2009 - 17:20:45 CDT)
  • Goutham (Wed Mar 25 2009 - 16:54:33 CDT)
• merging independent dcd files,
  • Aliasghar Alizadeh-Mojarad (Thu Jul 28 2016 - 14:35:26 CDT)
  • Aliasghar Alizadeh-Mojarad (Tue Jul 26 2016 - 22:05:10 CDT)
• Merging multiple PDB files
  • Josh Vermaas (Mon Jun 15 2015 - 15:03:16 CDT)
  • Axel Kohlmeyer (Mon Jun 15 2015 - 14:49:29 CDT)
  • BALCZIAK, LOUIS (Mon Jun 15 2015 - 13:24:49 CDT)
• merging multiple structures
  • Axel Kohlmeyer (Wed Jan 15 2014 - 14:45:38 CST)
  • Josh Vermaas (Wed Jan 15 2014 - 14:08:56 CST)
  • Martin, Erik W (Wed Jan 15 2014 - 12:49:32 CST)
• merging several pdbs in one file
  • Aref Takiden (Mon Sep 29 2014 - 06:07:23 CDT)
  • Dennis N Bromley (Fri Sep 26 2014 - 11:31:25 CDT)
  • Maxim Belkin (Fri Sep 26 2014 - 09:33:45 CDT)
  • Aref Takiden (Fri Sep 26 2014 - 02:55:30 CDT)
  • Tristan Croll (Tue Sep 23 2014 - 19:13:08 CDT)
  • Maxim Belkin (Tue Sep 23 2014 - 06:23:31 CDT)
  • Dennis N Bromley (Mon Sep 22 2014 - 12:52:59 CDT)
  • Maxim Belkin (Mon Sep 22 2014 - 13:04:37 CDT)
  • Aref Takiden (Mon Sep 22 2014 - 07:55:53 CDT)
• merging two pdb files
  • Richard Swenson (Fri Nov 09 2007 - 09:20:55 CST)
  • Axel Kohlmeyer (Thu Nov 08 2007 - 21:55:17 CST)
  • Axel Kohlmeyer (Thu Nov 08 2007 - 21:50:10 CST)
  • Francesco Pietra (Thu Nov 08 2007 - 11:48:23 CST)
  • Dibyadeep Paul (Thu Nov 08 2007 - 08:24:18 CST)
  • Axel Kohlmeyer (Thu Nov 08 2007 - 06:39:05 CST)
  • Dibyadeep Paul (Thu Nov 08 2007 - 06:06:19 CST)
• merging two pdbs???
  • genie lfs (Thu Apr 13 2006 - 02:36:54 CDT)
  • John Stone (Thu Apr 13 2006 - 01:37:20 CDT)
  • genie lfs (Thu Apr 13 2006 - 01:26:36 CDT)
• Merging two proteins
  • John H (Mon Jun 17 2019 - 16:38:06 CDT)
  • John Stone (Mon Jun 17 2019 - 15:57:21 CDT)
  • Bassam Haddad (Mon Jun 17 2019 - 15:50:19 CDT)
  • John H (Mon Jun 17 2019 - 10:56:24 CDT)
• Merging two structures with duplicate segment names using TCL/Tk Console
  • Ash Johnson (Thu Aug 13 2015 - 04:29:19 CDT)
  • Josh Vermaas (Tue Aug 11 2015 - 09:48:47 CDT)
  • Ash Johnson (Mon Aug 10 2015 - 19:29:31 CDT)
• Mesa libs + Mac OS X + HW stereo + vmd
  • John Stone (Fri Jun 17 2005 - 17:20:52 CDT)
  • Dr. Mick Knaggs (Fri Jun 17 2005 - 14:28:30 CDT)
• Mesa rendering
  • Axel Kohlmeyer (Thu Jul 20 2006 - 08:27:31 CDT)
  • Olaf Lenz (Thu Jul 20 2006 - 07:56:26 CDT)
• Message from Chaitanya Krishna
  • Chaitanya Krishna (Fri Jan 27 2006 - 08:17:50 CST)
• message in the console
  • Axel Kohlmeyer (Mon Dec 19 2005 - 14:59:27 CST)
  • John Stone (Mon Dec 19 2005 - 11:47:36 CST)
  • Cojocaru,Vlad (Sun Dec 18 2005 - 13:42:18 CST)
• metadynamics potential vs pmf
  • Stefano Guglielmo (Fri Feb 03 2017 - 02:01:33 CST)
  • Giacomo Fiorin (Thu Feb 02 2017 - 21:21:19 CST)
  • Giacomo Fiorin (Wed Feb 01 2017 - 08:43:26 CST)
  • Stefano Guglielmo (Tue Jan 31 2017 - 20:02:51 CST)
• Metal-Metal distance
  • John Stone (Tue Apr 08 2003 - 17:42:22 CDT)
  • chandran karunakaran (Tue Apr 08 2003 - 17:26:13 CDT)
• Metal_Envornment Script
  • John Stone (Fri May 24 2002 - 15:40:24 CDT)
  • John Stone (Fri May 24 2002 - 12:05:19 CDT)
  • John Stone (Fri May 24 2002 - 12:02:42 CDT)
  • Storr, Mark (Fri May 24 2002 - 11:38:00 CDT)
• metalloprotein simulation
  • t.shivam_at_iitg.ernet.in (Wed Feb 07 2018 - 10:11:39 CST)
• methanol_solvent box
  • Axel Kohlmeyer (Sat Oct 01 2011 - 08:31:05 CDT)
  • lara lara (Sat Oct 01 2011 - 07:17:27 CDT)
  • Axel Kohlmeyer (Sat Oct 01 2011 - 07:08:44 CDT)
  • lara lara (Sat Oct 01 2011 - 05:45:32 CDT)
• method for user-defined coloring
  • Axel Kohlmeyer (Fri Jan 06 2012 - 12:44:15 CST)
  • JhonY. I. (Fri Jan 06 2012 - 11:53:37 CST)
• Method to measure DNA perterbation
  • syma (Wed Nov 16 2005 - 02:28:14 CST)
  • Kara Di Giorgio (Tue Nov 15 2005 - 19:43:35 CST)
• Micelle formation visualisation
  • Ashar Malik (Tue Jun 27 2017 - 14:28:30 CDT)
  • Prapti Lohi (Tue Jun 27 2017 - 13:29:49 CDT)
• Micelles...
  • Luis Rosales (Wed Feb 09 2005 - 23:06:16 CST)
• Migrating a tcl plugin to C
  • John Stone (Fri Nov 22 2013 - 23:33:07 CST)
  • Charles McAnany (Sat Nov 16 2013 - 16:14:21 CST)
• Min. Image Convention after Translation & Rotation
  • Neelanjana Sengupta (Mon Oct 02 2006 - 12:14:44 CDT)
  • Axel Kohlmeyer (Fri Sep 08 2006 - 14:00:58 CDT)
  • Neelanjana Sengupta (Fri Sep 08 2006 - 13:01:13 CDT)
  • Axel Kohlmeyer (Thu Sep 07 2006 - 20:08:45 CDT)
  • Neelanjana Sengupta (Thu Sep 07 2006 - 17:53:22 CDT)
• minimal distance between atoms in all frame
  • alberto (Tue Feb 05 2019 - 12:04:43 CST)
• Minimal VMD
  • John Stone (Mon Apr 07 2014 - 15:23:42 CDT)
  • Jacob Durrant (Mon Apr 07 2014 - 14:42:47 CDT)
• minimization changed the occupancy of all atoms to zero
  • John Stone (Mon Sep 20 2010 - 16:37:47 CDT)
  • Parisa Akhski (Mon Sep 20 2010 - 10:35:35 CDT)
  • John Stone (Sun Sep 19 2010 - 14:09:41 CDT)
  • Parisa Akhski (Fri Sep 17 2010 - 16:17:11 CDT)
• minimization command
  • Sourmaidou, Damiani (Wed Jan 23 2008 - 12:35:49 CST)
• Minimization--Number of Timesteps
  • Jackson Cavett (Sat Aug 13 2016 - 16:36:27 CDT)
  • Vermaas, Joshua (Sat Aug 13 2016 - 15:37:45 CDT)
  • Jackson Cavett (Sat Aug 13 2016 - 11:29:31 CDT)
  • Jackson Cavett (Fri Aug 12 2016 - 22:15:32 CDT)
  • Vermaas, Joshua (Fri Aug 12 2016 - 15:56:20 CDT)
  • Jackson Cavett (Fri Aug 12 2016 - 15:21:21 CDT)
  • Vermaas, Joshua (Fri Aug 12 2016 - 14:45:00 CDT)
  • Jackson Cavett (Fri Aug 12 2016 - 13:27:27 CDT)
• minimize during FEP & OS-FEP
  • Raul Araya Secchi (Fri Mar 24 2006 - 10:49:09 CST)
• minimizing each structure of a DCD file
  • Ashar Malik (Sun Jan 22 2017 - 07:48:30 CST)
  • saeed amini (Sun Jan 22 2017 - 06:43:24 CST)
• minimizing text console on startup (Windows)
  • Jason Quenneville (Thu Dec 03 2015 - 10:02:30 CST)
• Minimum content/format of PSF file to specify bonds?
  • Josh Vermaas (Mon Nov 23 2015 - 13:43:08 CST)
  • Jérôme Hénin (Mon Nov 23 2015 - 12:31:57 CST)
  • Bret Hess (Mon Nov 23 2015 - 11:59:22 CST)
  • Bret Hess (Mon Nov 23 2015 - 11:46:31 CST)
  • Jérôme Hénin (Mon Nov 23 2015 - 11:52:04 CST)
  • Axel Kohlmeyer (Mon Nov 23 2015 - 11:29:58 CST)
  • Bret Hess (Mon Nov 23 2015 - 10:55:22 CST)
• minimum distance b/w two atoms
  • John Stone (Tue Aug 15 2006 - 18:21:12 CDT)
  • Narender Singh Maan (Tue Aug 15 2006 - 18:05:30 CDT)
• Minimum distance between atoms within representation
  • Radak, Brian K (Fri May 05 2017 - 15:15:55 CDT)
  • Dawid das (Fri May 05 2017 - 12:22:07 CDT)
• minimum value of index numbers
  • Joaquim Rui de Castro Rodrigues (Tue Jun 16 2015 - 12:56:15 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2015 - 13:08:04 CDT)
  • Mehdi Bagherpour (Tue Jun 16 2015 - 11:01:18 CDT)
• Minmax command
  • Bassam Haddad (Sun Mar 01 2020 - 12:09:38 CST)
  • Giacomo Fiorin (Sun Mar 01 2020 - 10:19:15 CST)
  • Yogesh Sharma (Sun Mar 01 2020 - 08:38:20 CST)
• Minor bug report in VMD 1.9.1
  • John Stone (Tue Aug 26 2014 - 10:10:17 CDT)
  • Tristan Croll (Mon Aug 25 2014 - 22:23:37 CDT)
• Minor bug/annoyance: AutoPSF and acetylated CHARMM glycans
  • Tristan Croll (Mon Jun 23 2014 - 15:48:01 CDT)
  • Tristan Croll (Sat Jun 21 2014 - 19:13:31 CDT)
• Minor bug: clash between Multiseq representations and AutoIMD
  • Tristan Croll (Sat Feb 08 2014 - 18:40:16 CST)
• Minor error in VMD PSF parser for atom charges
  • Tristan Croll (Mon Jul 30 2012 - 17:32:45 CDT)
  • John Stone (Mon Jul 30 2012 - 16:25:35 CDT)
  • Tristan Croll (Sat Jul 28 2012 - 19:53:08 CDT)
• Mirror reflection
  • John Stone (Sat Feb 13 2010 - 01:32:37 CST)
  • Rachel Ruskin (Sat Feb 13 2010 - 01:24:58 CST)
• Misfunction of some plugins if compiled
  • Axel Kohlmeyer (Wed Apr 18 2012 - 21:18:53 CDT)
  • Vlastimil Zíma (Tue Apr 17 2012 - 12:28:10 CDT)
• misleading documentation for -res switch in MDFF plugin
  • Tristan Croll (Mon Jan 20 2014 - 19:50:35 CST)
• Misleading failure of VMD with charge/CGenFF from waterbox
  • Francesco Pietra (Sun Nov 23 2014 - 03:21:38 CST)
• mismatch between phi and pdb files
  • John Stone (Tue Apr 10 2007 - 08:34:19 CDT)
  • Michael Widmann (Tue Apr 10 2007 - 03:07:52 CDT)
• Missing angles and dihedrals
  • Axel Kohlmeyer (Mon Jul 21 2008 - 19:31:48 CDT)
  • Schreiner Eduard (Mon Jul 21 2008 - 19:04:44 CDT)
  • Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
• Missing atom error while atoms exist in pdb
  • Peter Freddolino (Thu Jul 06 2006 - 13:12:39 CDT)
  • Rima Chaudhuri (Thu Jul 06 2006 - 11:46:46 CDT)
  • Peter Freddolino (Thu Jul 06 2006 - 11:33:04 CDT)
  • Peter Freddolino (Thu Jul 06 2006 - 11:27:45 CDT)
  • Rima Chaudhuri (Thu Jul 06 2006 - 11:05:50 CDT)
• missing atoms
  • Axel Kohlmeyer (Mon Sep 27 2010 - 10:29:25 CDT)
  • yan zhang (Mon Sep 27 2010 - 08:42:07 CDT)
• missing basic tutorials for VMD scripting?
  • John Stone (Mon Mar 03 2008 - 10:57:10 CST)
  • Axel Kohlmeyer (Sat Mar 01 2008 - 06:49:32 CST)
  • massimo camarda (Sat Mar 01 2008 - 03:02:49 CST)
• Missing Bond at Periodic Boundary
  • Reza Namakian (Mon May 01 2023 - 09:04:06 CDT)
• missing bond problem
  • Axel Kohlmeyer (Wed Apr 27 2005 - 10:01:50 CDT)
  • haider abbas (Wed Apr 27 2005 - 06:28:03 CDT)
• Missing bonds
  • Karsten Suhre (Thu May 06 2004 - 01:44:52 CDT)
  • Min Chin Chai (Wed May 05 2004 - 17:28:28 CDT)
  • John Stone (Fri May 30 2003 - 10:03:34 CDT)
  • noel.oboyle2_at_mail.dcu.ie (Fri May 30 2003 - 09:14:49 CDT)
• missing cell length on DCD
  • Axel Kohlmeyer (Sat Jul 14 2007 - 11:42:08 CDT)
  • Èùìáò Åõáããåëéäçò (Sat Jul 14 2007 - 11:32:17 CDT)
  • John Stone (Wed May 03 2006 - 14:15:13 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Wed May 03 2006 - 14:04:48 CDT)
• missing fragments in molefacture
  • Irene Newhouse (Wed Dec 01 2010 - 00:16:32 CST)
  • Peter Freddolino (Tue Nov 30 2010 - 19:25:50 CST)
  • Irene Newhouse (Mon Nov 29 2010 - 16:08:46 CST)
• missing frames in trajectory file
  • Parisa Akhski (Tue Oct 12 2010 - 16:33:12 CDT)
  • John Stone (Tue Oct 12 2010 - 15:28:06 CDT)
  • Parisa Akhski (Wed Oct 06 2010 - 17:49:29 CDT)
• Missing main menu
  • Stefan Gerlach (Tue Oct 10 2006 - 04:03:10 CDT)
  • Axel Kohlmeyer (Mon Oct 09 2006 - 13:56:52 CDT)
  • Stefan Gerlach (Mon Oct 09 2006 - 13:12:52 CDT)
• Missing operand error in vmd pathways plugin
  • Diego Gomes (Wed Dec 20 2023 - 09:31:18 CST)
  • Ananya Nayak (Thu Dec 14 2023 - 01:29:56 CST)
• missing operator at _@_in expression "$i _@_$n"
  • Matt Watkins (Wed Nov 17 2010 - 12:31:51 CST)
  • Axel Kohlmeyer (Wed Nov 17 2010 - 10:39:07 CST)
  • 程昌利 (Wed Nov 17 2010 - 09:59:16 CST)
• missing RMSD tool in extensions menu
  • John Stone (Sat Feb 14 2004 - 01:28:56 CST)
  • Sergio E. Wong (Fri Feb 13 2004 - 18:22:42 CST)
• Missing substituents in the converted pdb format
  • Lalehan Ozalp (Mon Dec 11 2017 - 03:01:46 CST)
• missing terminal residues while generating side chain atoms by psfgen
  • Jernej Zidar (Thu Aug 02 2012 - 04:31:10 CDT)
  • MeiShan Lin (Wed Aug 01 2012 - 13:36:51 CDT)
• Missing vmdplugin.h in VMD source code
  • John Stone (Fri Mar 21 2003 - 16:31:34 CST)
  • Paul Darwen (Wed Mar 19 2003 - 22:35:22 CST)
• missing" Number of frames to render" in VMD window movie generator
  • John Stone (Tue Jun 13 2006 - 11:51:15 CDT)
  • pkb bioinfo (Mon Jun 12 2006 - 05:39:40 CDT)
• Mistakes in the 1.8.7 User guide
  • Myunggi Yi (Wed Sep 09 2009 - 13:20:21 CDT)
  • Myunggi Yi (Wed Sep 09 2009 - 10:18:40 CDT)
• Misunderstanding about SASA
  • Axel Kohlmeyer (Sat Apr 21 2007 - 17:31:53 CDT)
  • Patrick Redmill (Sat Apr 21 2007 - 10:14:19 CDT)
• mkdir command in vmd
  • sunyeping (Tue Sep 27 2016 - 22:05:23 CDT)
  • Vermaas, Joshua (Mon Sep 26 2016 - 10:51:00 CDT)
  • Axel Kohlmeyer (Sun Sep 25 2016 - 22:05:45 CDT)
  • sunyeping (Sun Sep 25 2016 - 21:02:17 CDT)
• MM-PBSA calculation
  • Ramin Ekhteiari (Wed Nov 06 2013 - 02:56:43 CST)
• MM/PBSA in VMD
  • L. Michel Espinoza-Fonseca (Fri Feb 27 2009 - 06:49:43 CST)
  • Jianping Lin (Thu Feb 26 2009 - 12:12:46 CST)
• MMPBSA Question
  • Mcguire, Kelly (Mon Feb 21 2022 - 15:44:57 CST)
• MMTools
  • Chathurika Abeyrathne (Tue Aug 16 2011 - 20:03:45 CDT)
  • Swarna Patra (Thu Feb 17 2005 - 23:32:55 CST)
• mmView - a tool for mmCIF exploration
  • Daniel Svozil (Tue Dec 06 2011 - 05:38:03 CST)
• Model building questions
  • YangMingjun (Mon May 18 2009 - 08:14:38 CDT)
• model export
  • John Stone (Wed Jan 19 2005 - 16:48:59 CST)
  • Paul D. Jones (Wed Jan 19 2005 - 13:33:04 CST)
• model protein chain not displayed properly
  • John Stone (Mon Sep 28 2009 - 15:08:22 CDT)
  • Benjamin Bouvier (Mon Sep 28 2009 - 14:54:09 CDT)
  • Elias Ahadi (Mon Sep 28 2009 - 13:38:32 CDT)
• model with TIP4 water minimization getting crashed every time
  • Faisal, H M Nasrullah (Thu Jan 07 2021 - 21:56:25 CST)
• modeling rGO without ReaxFF
  • David Cohen-Tanugi (Fri Feb 15 2013 - 08:53:15 CST)
• modelling phosphorylation
  • L. Michel Espinoza-Fonseca (Mon Sep 18 2006 - 09:45:03 CDT)
  • Dani Süveges (Mon Sep 18 2006 - 04:45:55 CDT)
• Modelling program that does hydrogen adjust
  • Axel Kohlmeyer (Fri May 28 2010 - 08:30:34 CDT)
  • Bjoern Olausson (Fri May 28 2010 - 06:14:24 CDT)
  • Jennifer Williams (Thu May 27 2010 - 10:21:49 CDT)
• Modification of terminal N-amino and C-carboxyl of peptide
  • Sourav Ray (Fri May 29 2015 - 11:10:47 CDT)
  • Josh Vermaas (Fri May 29 2015 - 10:56:45 CDT)
  • Sourav Ray (Thu May 28 2015 - 05:13:17 CDT)
• Modified DNA bases PDB files
  • Shahid Qamar (Wed Sep 07 2005 - 14:00:54 CDT)
• modify and save updated PSF and CRD files
  • soumadwip ghosh (Wed Mar 24 2021 - 04:02:20 CDT)
• Modify bond label.
  • John Stone (Thu Sep 18 2014 - 16:46:07 CDT)
  • Dawid das (Mon Sep 15 2014 - 10:01:01 CDT)
• modify the plugin in MACOS X
  • H. Lee (Mon Apr 03 2017 - 12:20:57 CDT)
  • H. Lee (Mon Apr 03 2017 - 10:11:43 CDT)
  • John Stone (Mon Apr 03 2017 - 10:16:14 CDT)
  • John Stone (Mon Apr 03 2017 - 09:47:12 CDT)
  • H. Lee (Sat Apr 01 2017 - 08:28:11 CDT)
• Modify XYZ reader plugin
  • Christian Leitold (Wed Jul 15 2015 - 07:27:32 CDT)
  • Axel Kohlmeyer (Wed Jul 15 2015 - 07:21:08 CDT)
  • Christian Leitold (Wed Jul 15 2015 - 05:46:52 CDT)
  • Axel Kohlmeyer (Tue Jul 14 2015 - 11:21:27 CDT)
  • Christian Leitold (Tue Jul 14 2015 - 11:25:17 CDT)
  • Christian Leitold (Tue Jul 14 2015 - 11:07:07 CDT)
• Modifying amino acid to a non-standard amino acid using VMD (proline to hydroxyproline)
  • Ajasja LjubetiÄ� (Fri Jul 09 2010 - 02:33:13 CDT)
  • Sujata Sovani (Thu Jul 08 2010 - 19:05:55 CDT)
• modifying mk3drame.tcl
  • syma (Wed Oct 19 2005 - 04:39:12 CDT)
• Modifying vmd permeation.tcl script
  • Sadegh Faramarzi Ganjabad (Wed Apr 13 2016 - 01:21:48 CDT)
• Modulus atom selection
  • Jacob Durrant (Mon Feb 17 2014 - 13:30:56 CST)
  • John Stone (Mon Feb 17 2014 - 10:33:02 CST)
  • Jacob Durrant (Sat Feb 15 2014 - 02:19:12 CST)
  • Josh Vermaas (Wed Feb 12 2014 - 17:16:06 CST)
  • Axel Kohlmeyer (Wed Feb 12 2014 - 17:01:55 CST)
  • Jacob Durrant (Wed Feb 12 2014 - 14:37:09 CST)
• MOE and NAMD
  • Bharat Kumar (Thu Dec 30 2010 - 18:31:21 CST)
  • Axel Kohlmeyer (Thu Dec 30 2010 - 14:43:20 CST)
  • Bharat Kumar (Wed Dec 29 2010 - 09:55:21 CST)
• MOE discussion
  • John Stone (Wed Apr 28 2004 - 17:03:31 CDT)
  • Ahmet Bakan (Wed Apr 28 2004 - 17:26:07 CDT)
  • Mike McCallum (Wed Apr 28 2004 - 14:43:22 CDT)
• mol add url
  • Thomas C Bishop (Tue Dec 22 2015 - 23:58:30 CST)
  • John Stone (Tue Dec 22 2015 - 09:52:51 CST)
  • Josh Vermaas (Fri Dec 18 2015 - 18:00:02 CST)
  • Thomas C Bishop (Fri Dec 18 2015 - 16:41:24 CST)
• mol addfile
  • CHARLES MCCALLUM (Tue Apr 23 2024 - 14:04:23 CDT)
  • Diego Gomes (Mon Apr 22 2024 - 13:33:07 CDT)
  • Roni Saiba (Fri Apr 19 2024 - 22:05:43 CDT)
  • CHARLES MCCALLUM (Thu Apr 18 2024 - 13:18:51 CDT)
• mol clipplane
  • John Stone (Mon Jul 05 2004 - 14:12:41 CDT)
  • Jiancong Xu (Fri Jul 02 2004 - 14:48:26 CDT)
• mol clipplane very slow
  • John Stone (Wed Jul 21 2004 - 09:50:13 CDT)
  • Simon Latapie (Wed Jul 21 2004 - 02:03:44 CDT)
• mol files
  • John Stone (Tue Nov 08 2005 - 14:35:16 CST)
  • Osmany Guirola Cruz (Tue Nov 08 2005 - 14:26:47 CST)
• mol load and mol addfile
  • Axel Kohlmeyer (Mon Mar 26 2007 - 16:33:51 CDT)
  • Jianhui Tian (Mon Mar 26 2007 - 15:43:20 CDT)
• mol new [from memory]
  • Maxim Belkin (Mon Aug 11 2014 - 12:34:51 CDT)
  • Axel Kohlmeyer (Mon Aug 11 2014 - 12:36:16 CDT)
  • Thomas C. Bishop (Mon Aug 11 2014 - 11:59:51 CDT)
• mol new [from memory] SOLVED
  • Thomas C. Bishop (Mon Aug 11 2014 - 12:39:26 CDT)
• mol options first and last
  • Axel Kohlmeyer (Mon Apr 22 2013 - 14:44:47 CDT)
  • Andrew Petersen (Mon Apr 22 2013 - 13:59:06 CDT)
• mol pdbload failing
  • John Stone (Tue Aug 15 2017 - 11:51:53 CDT)
  • Wang, Steven (Tue Aug 15 2017 - 11:55:54 CDT)
  • Steven(Yuhang) Wang (Wed Jul 26 2017 - 20:50:37 CDT)
  • Mike McCallum (Wed Jul 26 2017 - 09:50:28 CDT)
  • John Stone (Wed Jul 26 2017 - 09:53:12 CDT)
  • João Ribeiro (Wed Jul 26 2017 - 08:29:15 CDT)
  • Mike McCallum (Wed Jul 26 2017 - 01:51:58 CDT)
  • Ashar Malik (Wed Jul 26 2017 - 00:39:09 CDT)
  • Ashar Malik (Wed Jul 26 2017 - 00:35:27 CDT)
  • Mike McCallum (Tue Jul 25 2017 - 23:40:14 CDT)
• mol representation Isosurface - Parameters?
  • Vermaas, Joshua (Fri Nov 30 2018 - 13:31:19 CST)
  • MD Simulation (Fri Nov 30 2018 - 06:36:17 CST)
• Mol representation using coordinates
  • Rogan Carr (Tue Apr 21 2009 - 09:03:35 CDT)
  • Max (Tue Apr 21 2009 - 08:50:05 CDT)
• mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux)
  • John Stone (Fri Apr 16 2010 - 18:22:20 CDT)
  • Andrew M. Simms (Fri Apr 16 2010 - 18:18:16 CDT)
  • John Stone (Fri Apr 16 2010 - 18:10:22 CDT)
  • Andrew M. Simms (Fri Apr 16 2010 - 17:48:11 CDT)
  • John Stone (Fri Apr 16 2010 - 17:00:15 CDT)
  • Andrew M. Simms (Fri Apr 16 2010 - 11:30:09 CDT)
• mol volume
  • John Stone (Wed Jan 29 2003 - 13:51:23 CST)
  • J. Rui Rodrigues (Wed Jan 29 2003 - 10:17:30 CST)
• mol2 file format & displaying atom connectivities
  • FyD (Fri Sep 06 2013 - 08:55:42 CDT)
  • Axel Kohlmeyer (Fri Sep 06 2013 - 07:43:12 CDT)
  • FyD (Fri Sep 06 2013 - 06:35:52 CDT)
• Mol2 with Charmm atom types?
  • Peter Freddolino (Tue Jun 01 2010 - 21:11:12 CDT)
  • Edelmiro Moman (Mon May 31 2010 - 04:45:51 CDT)
• Molden format plugin
  • John Stone (Tue Mar 29 2011 - 10:23:49 CDT)
  • Ignacio Fernández Galván (Thu Mar 17 2011 - 13:33:50 CDT)
  • John Stone (Thu Mar 17 2011 - 11:28:24 CDT)
  • Ignacio Fernández Galván (Thu Mar 17 2011 - 11:12:33 CDT)
• Molden orbitals: how to increase the bounding box size?
  • John Stone (Sat Aug 04 2018 - 09:59:04 CDT)
  • Vladimir Stegailov (Sat Aug 04 2018 - 07:10:18 CDT)
• molden xyz movie
  • B. Bennion (Fri Oct 11 2002 - 00:40:52 CDT)
  • eric hu (Thu Oct 10 2002 - 20:27:11 CDT)
  • B. Bennion (Thu Oct 10 2002 - 18:22:59 CDT)
  • eric hu (Thu Oct 10 2002 - 17:57:13 CDT)
• Molecular Design Interface Software Development Position
  • Joao Vieira-Ribeiro (Tue Jul 06 2021 - 15:00:34 CDT)
• molecular dipole moment
  • Axel Kohlmeyer (Thu Feb 04 2010 - 05:11:59 CST)
  • Jelle van Sijl (Wed Feb 03 2010 - 11:21:33 CST)
• Molecular Display component
  • Alexandre Suman de Araujo (Mon Mar 28 2005 - 10:56:17 CST)
• Molecular dynamics order parameters
  • Dallas Warren (Tue May 20 2003 - 16:58:09 CDT)
  • Joe Huang (Tue May 20 2003 - 17:41:59 CDT)
  • Justin Gullingsrud (Tue May 20 2003 - 13:03:29 CDT)
  • David Chalmers (Tue May 20 2003 - 06:47:18 CDT)
• molecular dynamics problems
  • nettles (Mon Jul 19 2004 - 16:01:02 CDT)
  • vlad.chindea_at_pharmatech.ro (Mon Jul 19 2004 - 15:45:48 CDT)
• Molecular orbitals from molden files
  • florian.naegele_at_uni-ulm.de (Thu Feb 17 2022 - 03:39:37 CST)
• molecular orientation
  • John Stone (Mon Jan 31 2005 - 13:40:42 CST)
  • li (Fri Jan 28 2005 - 21:10:26 CST)
• molecular representation: new lead generation software
  • root (Fri Dec 05 1997 - 05:08:29 CST)
  • Salvatore Guccione (Thu Dec 04 1997 - 04:43:51 CST)
  • Salvatore Guccione (Wed Dec 03 1997 - 05:19:07 CST)
  • root (Tue Dec 02 1997 - 06:18:33 CST)
  • SciFarma (Tue Dec 02 1997 - 02:53:25 CST)
• Molecular ruler ?
  • John Stone (Tue Mar 30 2004 - 15:18:25 CST)
  • John Stone (Tue Mar 30 2004 - 11:28:00 CST)
  • Marc Baaden (Mon Mar 29 2004 - 14:44:03 CST)
• Molecular Simulation using PHANToM Haptic
  • Jim Phillips (Mon Nov 24 2003 - 18:24:47 CST)
  • Harit Jani (Mon Nov 24 2003 - 16:36:01 CST)
• Molecular Surface Restricted
  • Shang,Emily (Fri Aug 14 2020 - 19:14:59 CDT)
• molecular surface/multiple trajectory files/the speed in animation
  • John Stone (Mon Aug 09 2004 - 23:22:56 CDT)
  • Shirley Li (Mon Aug 09 2004 - 20:51:00 CDT)
  • John Stone (Mon Aug 09 2004 - 16:17:12 CDT)
  • Shirley Li (Sun Aug 08 2004 - 19:26:56 CDT)
• Molecular viewer for android or iPhone
  • Gianluca Interlandi (Wed Aug 08 2012 - 12:44:36 CDT)
• Molecule builder for large number of molecules
  • Vermaas, Joshua (Fri Aug 04 2017 - 12:05:29 CDT)
  • t.shivam_at_iitg.ernet.in (Fri Aug 04 2017 - 01:29:09 CDT)
  • Vermaas, Joshua (Mon Jul 31 2017 - 12:42:10 CDT)
  • Fernando Vallejos-Burgos (Mon Jul 31 2017 - 09:17:47 CDT)
  • t.shivam_at_iitg.ernet.in (Mon Jul 31 2017 - 07:32:56 CDT)
• MOLECULE DESTROYED BY FATAL ERROR
  • Axel Kohlmeyer (Sun Jan 16 2022 - 15:40:25 CST)
  • Eduardo Estevez (Sun Jan 16 2022 - 14:54:00 CST)
• Molecule is shown with too many bonds
  • Jason Smith (Fri Dec 18 2020 - 12:37:51 CST)
  • Domenico Riolfi Barzotto (Fri Dec 18 2020 - 11:22:56 CST)
  • vermaasj (Fri Dec 18 2020 - 10:32:43 CST)
  • John Stone (Fri Dec 18 2020 - 10:15:13 CST)
  • Domenico Riolfi Barzotto (Fri Dec 18 2020 - 08:32:48 CST)
• molecule jumps from one site to the other?
  • uu zhu (Mon Jul 13 2009 - 21:11:52 CDT)
• Molecule limit
  • Windle,Stephen (Thu Feb 01 2018 - 14:44:04 CST)
  • John Stone (Wed Jan 31 2018 - 18:06:57 CST)
  • Windle,Stephen (Wed Jan 31 2018 - 14:21:17 CST)
  • John Stone (Mon Jan 29 2018 - 23:23:33 CST)
  • Vermaas, Joshua (Mon Jan 29 2018 - 19:44:42 CST)
  • Ashar Malik (Mon Jan 29 2018 - 19:06:53 CST)
  • Windle,Stephen (Mon Jan 29 2018 - 18:20:31 CST)
• Molecule not visible in VMD 1.9.2 MAC OS X El Capitan
  • Nixon Raj (Wed Feb 17 2016 - 04:21:33 CST)
  • Nixon Raj (Mon Feb 15 2016 - 20:56:53 CST)
  • Nixon Raj (Mon Feb 15 2016 - 20:58:13 CST)
• Molecule occupies the lower-bottom corner of the main window
  • John Stone (Wed Nov 13 2019 - 00:37:10 CST)
  • fabio trovato (Sat Nov 02 2019 - 11:03:40 CDT)
• molecule orientation in saved state
  • John Stone (Thu Mar 15 2007 - 13:40:07 CDT)
  • Subramanian Vaitheeswaran (Wed Mar 14 2007 - 12:21:53 CDT)
• Molecule rotation
  • Charles.Schwieters_at_nih.gov (Thu Mar 08 2001 - 12:54:04 CST)
  • Justin Gullingsrud (Thu Mar 08 2001 - 12:32:15 CST)
  • B. Bennion (Thu Mar 08 2001 - 12:16:46 CST)
• molecule selection along an axis
  • Axel Kohlmeyer (Mon Jul 06 2015 - 11:46:08 CDT)
  • anu chandra (Mon Jul 06 2015 - 10:18:17 CDT)
• molecule.write()
  • John Stone (Thu Aug 25 2005 - 10:42:40 CDT)
  • Guanglei Cui (Thu Aug 25 2005 - 10:19:55 CDT)
• molecules drifted away from the focus....
  • John Stone (Mon Sep 19 2005 - 15:13:15 CDT)
  • Margaret Shun Cheung (Mon Sep 19 2005 - 15:08:15 CDT)
  • John Stone (Mon Sep 19 2005 - 15:05:17 CDT)
  • Margaret Shun Cheung (Sun Sep 18 2005 - 15:11:45 CDT)
• molefacture "force tetrahedral" failure
  • Peter Freddolino (Wed May 04 2011 - 19:31:24 CDT)
  • Francesco Pietra (Wed May 04 2011 - 01:33:01 CDT)
• Molefacture "namehead" error
  • Peter Freddolino (Mon Apr 27 2009 - 20:29:31 CDT)
  • Sebastián Gutiérrez (Mon Apr 27 2009 - 16:43:10 CDT)
• Molefacture & Six-Character Atom Types
  • Eric Schibli (Wed Oct 28 2015 - 21:52:09 CDT)
• Molefacture - VMD agreement
  • Jernej Zidar (Thu Aug 11 2011 - 01:41:08 CDT)
  • Axel Kohlmeyer (Thu Aug 11 2011 - 00:14:01 CDT)
  • Marc Charendoff (Wed Aug 10 2011 - 23:10:27 CDT)
• Molefacture 2 does not generate angles & dihedrals
  • Diego Gomes (Mon Nov 13 2023 - 10:41:45 CST)
  • Pawel Kedzierski (Fri Nov 10 2023 - 02:43:50 CST)
  • Pawel Kedzierski (Fri Nov 03 2023 - 07:32:57 CDT)
  • Diego Gomes (Thu Nov 02 2023 - 12:21:42 CDT)
  • Jirui Yang (Mon Oct 30 2023 - 12:20:33 CDT)
  • Pawel Kedzierski (Mon Oct 30 2023 - 07:22:18 CDT)
  • PaweÅ‚ KÄ™dzierski (Mon Oct 30 2023 - 02:54:26 CDT)
• Molefacture 2.0 - missing functionality?
  • John Stone (Tue Jan 12 2021 - 00:46:06 CST)
  • John Stone (Sun Nov 01 2020 - 01:43:46 CST)
  • Pawel Kedzierski (Fri Oct 30 2020 - 14:54:21 CDT)
  • Pawel Kedzierski (Fri Oct 30 2020 - 07:17:00 CDT)
• Molefacture and writegmxtop stops with no error
  • fan li (Sun Mar 14 2021 - 13:12:00 CDT)
• molefacture builds leucine with a nearly linear CA-CB-CG angle
  • nealec (Fri Dec 12 2014 - 20:22:47 CST)
• Molefacture does not write bond angles and dihedral angles info in the psf file
  • Valentin Gogonea (Thu Jul 23 2020 - 17:13:01 CDT)
  • John Stone (Thu Jul 23 2020 - 16:47:56 CDT)
  • Valentin Gogonea (Thu Jul 23 2020 - 16:10:38 CDT)
• molefacture doesn't recognize lower-case letters
  • John Stone (Tue Apr 21 2015 - 04:06:30 CDT)
  • nealec (Fri Dec 12 2014 - 20:23:24 CST)
• Molefacture error
  • Peter Freddolino (Wed Jan 24 2007 - 17:28:14 CST)
  • Javaria Ahmed (Wed Jan 24 2007 - 17:01:09 CST)
• molefacture selection
  • John Stone (Tue Jul 24 2012 - 10:13:43 CDT)
  • Reza Khalkhali (Tue Jul 24 2012 - 07:44:50 CDT)
• MOLEFACTURE with more than 200 atoms
  • Francesco Pietra (Tue Aug 27 2013 - 05:24:23 CDT)
• molfile plugin and the NetCDF file format
  • John Stone (Thu May 26 2005 - 09:49:31 CDT)
  • Lars Bruno Hansen (Thu May 26 2005 - 06:21:16 CDT)
• molfile plugin compilation for webassembly
  • Peter Schmidtke (Thu Dec 02 2021 - 07:58:11 CST)
  • John Stone (Wed Dec 01 2021 - 23:16:17 CST)
  • Axel Kohlmeyer (Wed Dec 01 2021 - 22:22:57 CST)
  • Kochnev, Iurii K (Wed Dec 01 2021 - 12:49:27 CST)
• molfile reader plugin woes
  • Axel Kohlmeyer (Thu Nov 08 2007 - 06:44:28 CST)
  • John Stone (Thu Nov 08 2007 - 07:24:35 CST)
  • Olaf Lenz (Thu Nov 08 2007 - 02:31:42 CST)
• molfile_plugins makefile errors
  • Bennion, Brian (Mon Nov 19 2012 - 18:09:11 CST)
  • Bennion, Brian (Mon Nov 19 2012 - 15:24:33 CST)
• molfracture force field
  • Prof. Eddie (Fri Jun 14 2013 - 12:05:46 CDT)
  • Prof. Eddie (Fri Jun 14 2013 - 11:35:33 CDT)
  • Mayne, Christopher G (Fri Jun 14 2013 - 11:50:10 CDT)
  • JC Gumbart (Tue Jun 04 2013 - 11:25:10 CDT)
  • Mayne, Christopher G (Tue Jun 04 2013 - 09:12:59 CDT)
  • Prof. Eddie (Tue Jun 04 2013 - 07:12:11 CDT)
  • Prof. Eddie (Wed May 29 2013 - 15:32:57 CDT)
• MolID error using fftk with VMD 1.94a49 on windows 10
  • John Stone (Mon Jul 19 2021 - 11:28:51 CDT)
  • Gumbart, JC (Fri Jul 16 2021 - 16:29:41 CDT)
  • Gumbart, JC (Tue Jul 13 2021 - 19:26:15 CDT)
  • ABEL Stephane (Tue Jul 13 2021 - 12:35:20 CDT)
  • Jason Smith (Tue Jul 13 2021 - 10:56:36 CDT)
• MolID error using fftk with VMD 1.94a49 on windows 10 - [Solved]
  • ABEL Stephane (Sun Jul 18 2021 - 09:25:50 CDT)
• molinfo top get filename, dialogue vs. "mol new"
  • Christopher MacDermaid (Thu May 09 2013 - 10:59:03 CDT)
  • John Stone (Thu May 09 2013 - 10:48:49 CDT)
  • Christopher MacDermaid (Thu May 09 2013 - 10:43:20 CDT)
  • Christopher MacDermaid (Thu May 09 2013 - 10:36:54 CDT)
  • Axel Kohlmeyer (Thu May 09 2013 - 10:41:28 CDT)
  • Christopher MacDermaid (Thu May 09 2013 - 10:32:35 CDT)
  • Mayne, Christopher G (Thu May 09 2013 - 09:52:08 CDT)
  • Axel Kohlmeyer (Thu May 09 2013 - 09:21:27 CDT)
  • Christopher MacDermaid (Thu May 09 2013 - 08:30:13 CDT)
• Molscript
  • John Stone (Thu Aug 26 2004 - 14:06:04 CDT)
  • Eckhart Guthöhrlein (Thu Aug 26 2004 - 07:14:17 CDT)
  • John Stone (Wed Aug 25 2004 - 09:29:13 CDT)
  • Eckhart Guthöhrlein (Wed Aug 25 2004 - 04:05:04 CDT)
  • John Stone (Tue Aug 24 2004 - 09:41:23 CDT)
  • Eckhart Guthöhrlein (Tue Aug 24 2004 - 06:16:30 CDT)
  • John Stone (Wed Mar 13 2002 - 09:31:36 CST)
  • Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 07:32:50 CST)
• Molscripts
  • John Stone (Tue Jun 16 2009 - 09:23:24 CDT)
  • Tomek Wlodarski (Tue Jun 16 2009 - 08:54:22 CDT)
• Molspace volume calculation failed
  • Albert (Tue Dec 16 2014 - 02:48:53 CST)
• Moment of inertia script
  • David Gae (Fri Mar 26 2021 - 15:11:54 CDT)
• monitor helicity change
  • Jufang Shan (Fri Feb 22 2008 - 11:37:55 CST)
  • Jufang Shan (Fri Feb 22 2008 - 11:40:52 CST)
  • OZGE ENGIN (Fri Feb 22 2008 - 01:58:26 CST)
  • Axel Kohlmeyer (Thu Feb 21 2008 - 22:40:02 CST)
  • Jufang Shan (Thu Feb 21 2008 - 19:06:14 CST)
• monitoring h bonds
  • John Stone (Tue Aug 24 2004 - 09:58:04 CDT)
  • bora erdemli (Tue Aug 24 2004 - 06:52:50 CDT)
  • John Stone (Mon Aug 23 2004 - 14:03:01 CDT)
  • bora erdemli (Wed Aug 18 2004 - 08:59:56 CDT)
• monitoring of aromatic interactions?
  • Cecilia Lindgren (Tue Sep 10 2013 - 07:25:46 CDT)
• mono2poly question
  • Joseph Bylund (Sun Feb 26 2012 - 23:24:00 CST)
• monomer to tatramer conversion
  • Josh Vermaas (Thu Jun 04 2020 - 13:06:02 CDT)
  • Yogesh Sharma (Thu Jun 04 2020 - 09:55:23 CDT)
• monomer transposes boundary box
  • Olaf Lenz (Wed May 26 2010 - 05:10:21 CDT)
  • Hugo Gutierrez de Teran (Tue May 25 2010 - 08:25:37 CDT)
  • Hugo Gutierrez de Teran (Tue May 25 2010 - 08:51:26 CDT)
  • Axel Kohlmeyer (Tue May 25 2010 - 08:29:22 CDT)
  • Axel Kohlmeyer (Tue May 25 2010 - 08:16:51 CDT)
  • Axel Kohlmeyer (Tue May 25 2010 - 08:35:22 CDT)
  • Hugo Gutiérrez de Teran (Tue May 25 2010 - 06:48:04 CDT)
• Monte Carlo conformational search
  • L. Michel Espinoza-Fonseca (Thu Aug 09 2007 - 07:58:19 CDT)
  • Daniel Kennedy (Wed Aug 08 2007 - 11:23:54 CDT)
• MOPAC Orbitals
  • McGuire, Kelly (Tue Apr 24 2018 - 12:13:29 CDT)
• Mopac VMD
  • McGuire, Kelly (Sun Oct 09 2022 - 15:13:35 CDT)
• more animating trajectories
  • Justin Gullingsrud (Thu Nov 08 2001 - 10:59:52 CST)
  • Raik Grunberg (Mon Nov 05 2001 - 14:46:15 CST)
  • John Stone (Sun Nov 04 2001 - 11:02:59 CST)
  • tom keyes (Sun Nov 04 2001 - 09:02:35 CST)
  • John Stone (Thu Nov 01 2001 - 13:13:47 CST)
  • tom keyes (Wed Oct 31 2001 - 17:24:04 CST)
• more animation
  • Tom Keyes (Sun Oct 07 2001 - 17:17:23 CDT)
• More Linux woes
  • John Stone (Mon Jul 29 2002 - 13:42:58 CDT)
  • Cesar Delgado (Fri Jul 26 2002 - 16:08:10 CDT)
• more on lammps and VMD coordinates
  • Axel Kohlmeyer (Tue Feb 26 2008 - 12:08:13 CST)
  • Arienti, Marco UTRC (Tue Feb 26 2008 - 11:18:37 CST)
• more precision in inverse trig functions
  • Robert Brunner (Wed Aug 03 2005 - 09:22:21 CDT)
  • vivek sharma (Wed Aug 03 2005 - 00:33:17 CDT)
  • Samuel Flores (Tue Aug 02 2005 - 23:11:38 CDT)
• More Script Problems
  • John Stone (Tue Aug 26 2003 - 13:32:18 CDT)
  • John Stone (Tue Aug 26 2003 - 09:31:24 CDT)
  • Raymond C. Fort Jr. (Tue Aug 26 2003 - 09:12:25 CDT)
• More than 99999 atoms?
  • Dr Nicolas Le Novere (Mon May 29 2000 - 08:04:29 CDT)
  • David Norris (Fri May 26 2000 - 09:51:19 CDT)
  • Keith Refson (Fri May 26 2000 - 06:24:38 CDT)
• morph
  • John Stone (Wed Mar 07 2007 - 16:43:29 CST)
  • christopher (Wed Feb 28 2007 - 16:18:48 CST)
• Morse potentail with charmm 27
  • Francesco Pietra (Sun Mar 24 2013 - 11:04:56 CDT)
• Most relevant VMD install
  • Jérôme Hénin (Fri Sep 09 2022 - 09:54:04 CDT)
  • John Stone (Thu Sep 08 2022 - 21:23:42 CDT)
  • Giacomo Fiorin (Thu Sep 08 2022 - 21:02:34 CDT)
  • Klimkowski, V (Thu Sep 08 2022 - 10:29:47 CDT)
  • Gumbart, JC (Wed Sep 07 2022 - 10:13:18 CDT)
  • Josh Vermaas (Wed Sep 07 2022 - 07:56:34 CDT)
  • Giacomo Fiorin (Wed Sep 07 2022 - 07:55:56 CDT)
  • Klimkowski, V (Tue Sep 06 2022 - 20:52:51 CDT)
• motion correlation map
  • Falgun Shah (Sun Mar 08 2009 - 12:41:18 CDT)
• Mouse behavior in VMD
  • Justin Gullingsrud (Mon Apr 24 2000 - 10:16:12 CDT)
• Mouse event listener
  • John Stone (Thu Mar 17 2011 - 14:02:14 CDT)
  • Gianluca Interlandi (Thu Mar 17 2011 - 13:21:42 CDT)
  • Gianluca Interlandi (Sun Sep 19 2010 - 20:42:36 CDT)
  • John Stone (Sun Sep 19 2010 - 19:32:23 CDT)
  • Gianluca Interlandi (Wed Sep 15 2010 - 16:11:41 CDT)
  • Gianluca Interlandi (Wed Sep 15 2010 - 15:20:37 CDT)
• Mouse-Add/Remove Bonds
  • DanLiu (Mon Apr 15 2013 - 11:32:58 CDT)
  • John Stone (Mon Apr 15 2013 - 10:11:28 CDT)
  • DanLiu (Mon Apr 15 2013 - 07:04:24 CDT)
• mouse-move-rep in VMD 1.8
  • John Stone (Fri Mar 21 2003 - 16:44:59 CST)
• mousing problem under OS X
  • John Stone (Tue Oct 21 2003 - 15:57:22 CDT)
  • Charles McCallum (Fri Oct 17 2003 - 23:25:46 CDT)
• Move center of volmap.dx
  • Jean-Patrick Francoia (Sun Jun 26 2016 - 15:00:34 CDT)
• Move labels
  • Himanshu Khandelia (Thu May 24 2007 - 06:19:25 CDT)
  • Arneh Babakhani (Wed May 23 2007 - 16:21:33 CDT)
• move ligand around the protin
  • Chris Harrison (Mon Oct 31 2011 - 11:54:43 CDT)
  • Steven Neumann (Mon Oct 31 2011 - 10:46:07 CDT)
• move matrix definition
  • Axel Kohlmeyer (Tue Oct 28 2008 - 12:14:13 CDT)
  • Edward Lyman (Tue Oct 28 2008 - 11:39:42 CDT)
• Move molecule
  • Uday Chippada (Thu Nov 18 2004 - 14:53:49 CST)
  • John Stone (Thu Nov 18 2004 - 14:26:51 CST)
• Move molecule to the origin of coordinate system
  • Joshua Adelman (Wed Nov 25 2009 - 12:46:13 CST)
  • John Stone (Wed Nov 25 2009 - 11:22:07 CST)
  • snoze pa (Wed Nov 25 2009 - 10:49:12 CST)
• move molecule using tcl
  • John Stone (Sun Apr 18 2004 - 19:24:40 CDT)
  • li (Thu Apr 15 2004 - 01:46:00 CDT)
• move volume file
  • Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
  • Lane Votapka (Fri May 20 2011 - 17:11:49 CDT)
• Move volumetric data with their associated PDB
  • Matthieu Benoit (Tue Feb 19 2019 - 19:23:39 CST)
  • Vermaas, Joshua (Tue Feb 19 2019 - 13:37:20 CST)
  • Ryan McGreevy (Tue Feb 19 2019 - 13:17:05 CST)
  • Matthieu Benoit (Tue Feb 19 2019 - 13:04:38 CST)
  • Ryan McGreevy (Tue Feb 19 2019 - 12:33:06 CST)
  • Matthieu Benoit (Tue Feb 19 2019 - 12:21:37 CST)
• moveby command
  • Axel Kohlmeyer (Sun Jul 31 2011 - 09:50:29 CDT)
  • hanif mahboobi (Sun Jul 31 2011 - 06:13:57 CDT)
• moveby command in vmd
  • Mohamed Osman (Fri Dec 15 2006 - 12:05:43 CST)
  • Nuno Ricardo Loureiro Ferreira (Fri Dec 15 2006 - 10:42:36 CST)
  • John Stone (Fri Dec 15 2006 - 10:35:57 CST)
  • Mohamed Osman (Fri Dec 15 2006 - 09:36:43 CST)
• movie
  • Axel Kohlmeyer (Sun Nov 09 2008 - 11:56:35 CST)
  • Abu Naser (Sun Nov 09 2008 - 11:06:20 CST)
  • Pijush Ghosh (Wed Oct 11 2006 - 19:38:21 CDT)
  • Alexandr Isayev (Wed Oct 11 2006 - 18:46:16 CDT)
  • John Stone (Wed Oct 11 2006 - 18:25:14 CDT)
  • Pijush Ghosh (Wed Oct 11 2006 - 17:36:40 CDT)
• movie for Openoffice
  • Jeffrey A Tibbitt (Fri Nov 17 2006 - 18:36:30 CST)
  • John Stone (Fri Nov 17 2006 - 15:55:00 CST)
  • Nguyen Hoang Phuong (Fri Nov 17 2006 - 15:40:34 CST)
• Movie for Trajectory analysis
  • John Stone (Tue Apr 25 2006 - 10:41:00 CDT)
  • Tamal Banerjee (Tue Apr 25 2006 - 00:09:17 CDT)
• Movie frame rendering
  • Peter Holm (Wed Jun 29 2005 - 11:06:50 CDT)
• movie from amber traj
  • John Stone (Tue Jan 14 2003 - 13:02:30 CST)
  • eric hu (Tue Jan 14 2003 - 12:46:38 CST)
• movie generation without runtime frame show
  • Axel Kohlmeyer (Fri Feb 22 2008 - 06:54:42 CST)
  • massimo camarda (Fri Feb 22 2008 - 04:15:58 CST)
• movie maker
  • John Stone (Tue Jun 16 2009 - 09:59:26 CDT)
  • Alison Grinthal (Tue Jun 16 2009 - 09:44:48 CDT)
• movie maker extension
  • Norman Geist (Tue Feb 03 2015 - 01:49:42 CST)
  • Eric Smoll (Mon Feb 02 2015 - 15:55:23 CST)
• Movie Maker in VMD
  • Josh Vermaas (Thu Jun 18 2020 - 20:54:48 CDT)
  • Josh Vermaas (Thu Jun 18 2020 - 12:16:55 CDT)
  • Seibold, Steve Allan (Thu Jun 18 2020 - 10:38:50 CDT)
  • siladitya mukherjee (Fri Sep 02 2011 - 12:41:02 CDT)
  • Axel Kohlmeyer (Fri Sep 02 2011 - 12:14:32 CDT)
  • siladitya mukherjee (Fri Sep 02 2011 - 11:12:21 CDT)
  • siladitya mukherjee (Thu Sep 01 2011 - 13:04:58 CDT)
  • siladitya mukherjee (Thu Sep 01 2011 - 11:11:15 CDT)
  • kohsj_at_ihpc.a-star.edu.sg (Wed Jul 05 2006 - 12:01:00 CDT)
  • Alexandr Isayev (Wed Jul 05 2006 - 10:27:02 CDT)
  • Adrian Koh (Wed Jul 05 2006 - 04:30:49 CDT)
• movie maker plugin doesn't load
  • Justin Gullingsrud (Fri Aug 16 2002 - 11:07:18 CDT)
  • Dr. Dan White (Fri Aug 16 2002 - 10:54:22 CDT)
• Movie Maker plugin parallel MPI rendering
  • John Stone (Wed Jun 15 2022 - 00:19:43 CDT)
  • Chris Taylor (Mon May 30 2022 - 13:12:09 CDT)
  • Axel Kohlmeyer (Sun May 29 2022 - 18:49:42 CDT)
  • Chris Taylor (Sun May 29 2022 - 17:33:46 CDT)
  • Chris Taylor (Thu May 26 2022 - 21:23:39 CDT)
• Movie maker problem in VMD
  • L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 11:56:11 CDT)
  • Ananyo Bandyopadhyay (Wed Sep 24 2008 - 11:11:14 CDT)
• Movie Maker skipping
  • John Stone (Tue Apr 01 2008 - 12:53:13 CDT)
  • John Stone (Tue Apr 01 2008 - 13:37:18 CDT)
  • Samuel Coulbourn Flores (Tue Apr 01 2008 - 13:25:08 CDT)
  • Samuel Coulbourn Flores (Tue Apr 01 2008 - 12:38:47 CDT)
• Movie Maker: How to specify use of trajectory in the movie script file
  • John Stone (Mon Mar 12 2007 - 20:56:51 CDT)
  • Shatadal Ghosh (Sat Mar 10 2007 - 01:43:42 CST)
• movie making
  • Josh Vermaas (Sat Feb 28 2015 - 14:41:41 CST)
  • Josh Vermaas (Sat Feb 28 2015 - 13:13:49 CST)
  • Maryam Kowsar (Sat Feb 28 2015 - 12:04:00 CST)
  • Axel Kohlmeyer (Thu Nov 23 2006 - 15:36:32 CST)
  • ivana adamovic (Thu Nov 23 2006 - 14:22:10 CST)
  • Charles McCallum (Tue Aug 05 2003 - 16:05:53 CDT)
  • Ioana Cozmuta (Tue Aug 05 2003 - 14:09:54 CDT)
• movie making in batch mode
  • barrett (Fri Feb 06 2004 - 04:57:01 CST)
  • John Stone (Tue Dec 16 2003 - 20:47:04 CST)
  • barrett (Tue Dec 16 2003 - 10:07:33 CST)
• movie making in vmd
  • Sumit Kumar (Mon Aug 26 2013 - 15:16:13 CDT)
  • Peter Murphy (Mon Aug 26 2013 - 14:24:36 CDT)
  • chin chun (Mon Aug 26 2013 - 13:29:20 CDT)
• Movie Making Troubles
  • John Stone (Thu Dec 10 2020 - 11:47:29 CST)
  • Geist, Norman (Wed Dec 09 2020 - 02:45:35 CST)
  • Josh Vermaas (Wed Dec 09 2020 - 10:54:39 CST)
  • Josh Vermaas (Tue Dec 08 2020 - 20:00:30 CST)
  • Demy Hernandez (Tue Dec 08 2020 - 18:48:07 CST)
• Movie making with smoothed trajectories
  • Jim Kress (Thu May 24 2012 - 13:38:23 CDT)
  • Axel Kohlmeyer (Thu May 24 2012 - 12:03:04 CDT)
  • Jim Kress (Thu May 24 2012 - 11:02:18 CDT)
• Movie of a xyz trajectory
  • Berit Hinnemann (Wed Nov 26 2008 - 07:03:06 CST)
  • Axel Kohlmeyer (Wed Nov 26 2008 - 05:12:34 CST)
  • Roberto Gaspari (Wed Nov 26 2008 - 03:09:43 CST)
• movie out of principal component analysis
  • Ahmet Bakan (Wed Nov 23 2011 - 21:27:45 CST)
  • maria goranovic (Wed Nov 23 2011 - 04:25:08 CST)
  • Vlad Cojocaru (Tue Nov 22 2011 - 08:13:29 CST)
  • Axel Kohlmeyer (Tue Nov 22 2011 - 08:10:39 CST)
  • maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
  • Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
  • maria goranovic (Mon Nov 21 2011 - 04:35:44 CST)
• Movie Plugin
  • Engelman, Joshua (Mon Apr 23 2012 - 16:32:01 CDT)
  • John Stone (Mon Apr 23 2012 - 15:52:40 CDT)
  • Axel Kohlmeyer (Sun Apr 22 2012 - 12:32:41 CDT)
  • Engelman, Joshua (Sat Apr 21 2012 - 16:50:59 CDT)
  • Engelman, Joshua (Sat Apr 21 2012 - 15:54:54 CDT)
• movie quality degradation
  • John Stone (Thu Mar 23 2006 - 11:51:41 CST)
  • Wang, Yangzhou (Tue Mar 21 2006 - 10:50:45 CST)
• movie rendering
  • John Stone (Mon Nov 02 2009 - 13:54:09 CST)
  • Liang, Linus H. (Mon Nov 02 2009 - 07:08:35 CST)
• movie rendering on MacOS 10.6
  • Toni Giorgino (Tue Sep 21 2010 - 07:13:21 CDT)
  • Neelanjana Sengupta (Mon Sep 20 2010 - 10:51:59 CDT)
• Movie Script
  • John Stone (Wed Apr 23 2003 - 09:48:40 CDT)
  • Rukman Hertadi (Wed Apr 23 2003 - 04:27:43 CDT)
• movie showing loop movement
  • John Stone (Thu Jul 29 2004 - 18:15:03 CDT)
  • Karsten Suhre (Thu Jul 29 2004 - 01:43:24 CDT)
  • Min Wu (Wed Jul 28 2004 - 17:57:37 CDT)
  • Sanjeev B.S. (Wed Jul 28 2004 - 03:20:43 CDT)
  • Min Wu (Wed Jul 28 2004 - 01:54:51 CDT)
• Movie Smoothing error
  • Maxim Belkin (Mon Apr 07 2014 - 10:50:58 CDT)
  • Maria Pikoula (Sun Apr 06 2014 - 08:36:15 CDT)
• movie under Windows
  • John Stone (Fri Oct 05 2001 - 16:40:32 CDT)
  • Nikolai Smolin (Fri Oct 05 2001 - 04:07:00 CDT)
• Movies in VMD
  • John Stone (Wed Jul 10 2013 - 15:30:32 CDT)
  • Josh Vermaas (Wed Jul 10 2013 - 15:01:07 CDT)
  • Hunter Brown (Wed Jul 10 2013 - 13:22:41 CDT)
• movies on a mac
  • Axel Kohlmeyer (Mon Jul 03 2006 - 11:30:24 CDT)
  • Mark Lorch (Mon Jul 03 2006 - 10:13:49 CDT)
• movies on mac os x (panther)
  • Mengjuei Hsieh (Mon May 24 2004 - 18:23:44 CDT)
  • James Rustad (Mon May 24 2004 - 15:30:19 CDT)
• Movies using Cygwin's ImageMagick?
  • Axel Kohlmeyer (Thu May 22 2008 - 09:33:30 CDT)
  • Gustavo Seabra (Thu May 22 2008 - 09:18:45 CDT)
• Moving a molecule, regarding
  • RAHUL SURESH (Sat Feb 01 2020 - 09:28:53 CST)
• moving an atom in VMD
  • John Stone (Tue Feb 14 2006 - 19:58:28 CST)
  • lily jin (Tue Feb 14 2006 - 11:15:13 CST)
• moving atoms and updating distances
  • jing liang (Sat Feb 13 2016 - 11:15:34 CST)
• Moving atoms so that origin is at fixed position with respect to the display
  • Miguel Caro (Fri Oct 27 2017 - 08:43:14 CDT)
  • Ashar Malik (Thu Oct 26 2017 - 14:41:59 CDT)
  • Vermaas, Joshua (Thu Oct 26 2017 - 12:49:41 CDT)
  • Miguel Caro (Thu Oct 26 2017 - 08:39:07 CDT)
• moving by angle and measuring angle
  • Shahid Qamar (Wed Aug 17 2005 - 18:01:10 CDT)
• Moving center of protein to another center x,y,z
  • Mohan maruthi sena (Sun Apr 07 2013 - 10:28:52 CDT)
• moving center of protien to another new center x,y,z
  • Axel Kohlmeyer (Sun Apr 07 2013 - 11:17:13 CDT)
  • Mohan maruthi sena (Sun Apr 07 2013 - 10:31:03 CDT)
• Moving domains in VMD
  • John Stone (Thu Feb 23 2006 - 11:46:13 CST)
  • Francis Reyes (Thu Feb 23 2006 - 09:08:45 CST)
• Moving Graphics Primitives to Front/Back
  • John Stone (Tue Jan 26 2021 - 00:14:25 CST)
  • Timothy Leong (Tue Jan 12 2021 - 09:18:16 CST)
• Moving making with short trajectories
  • Maxim Belkin (Sat Feb 28 2015 - 14:43:46 CST)
  • Josh Vermaas (Sat Feb 28 2015 - 13:11:03 CST)
  • anu chandra (Sat Feb 28 2015 - 11:30:52 CST)
  • anu chandra (Sat Feb 28 2015 - 11:07:23 CST)
  • Maxim Belkin (Sat Feb 28 2015 - 09:23:31 CST)
  • anu chandra (Sat Feb 28 2015 - 07:49:41 CST)
  • Maxim Belkin (Fri Feb 27 2015 - 14:42:10 CST)
  • John Stone (Fri Feb 27 2015 - 14:31:28 CST)
  • anu chandra (Fri Feb 27 2015 - 14:24:59 CST)
• Moving Molecule
  • BIN ZHANG (Mon Aug 24 2009 - 11:21:41 CDT)
  • Steve Seibold (Mon Aug 24 2009 - 10:37:42 CDT)
• moving molecules and getting the new positions
  • Andrew Dalke (Tue Mar 30 1999 - 18:50:35 CST)
  • Charles Schwieters (Tue Mar 30 1999 - 15:57:19 CST)
• Moving molecules with Spaceball or with a Tool
  • John Stone (Wed Feb 08 2006 - 18:06:43 CST)
  • Marc Baaden (Fri Feb 03 2006 - 11:50:15 CST)
• moving objects
  • John Stone (Mon Jun 17 2002 - 13:40:21 CDT)
• moving rotational center to display center
  • Joseph Bylund (Tue Apr 12 2011 - 12:01:27 CDT)
• Moving volume data with molecule
  • Avell Diroll (Thu Mar 29 2007 - 11:59:01 CDT)
  • John Stone (Thu Mar 29 2007 - 11:31:05 CDT)
  • Avell Diroll (Thu Mar 29 2007 - 10:05:40 CDT)
• mpeg doesn't run on media player
  • John Stone (Fri Jun 25 2004 - 17:50:10 CDT)
  • Bogdan Costescu (Fri Jun 25 2004 - 04:54:56 CDT)
  • Axel Kohlmeyer (Thu Jun 24 2004 - 23:27:22 CDT)
  • Harindar Keer (Thu Jun 24 2004 - 18:26:59 CDT)
• mpeg movie from trajectory
  • John Stone (Wed Nov 13 2002 - 09:40:41 CST)
  • John Stone (Wed Nov 13 2002 - 09:38:49 CST)
  • Stéphane Teletchéa (Wed Nov 13 2002 - 06:21:04 CST)
  • Vlad Cojocaru (Wed Nov 13 2002 - 04:39:26 CST)
• mpeg1 movie output makes 0Kb file - any one know why?
  • John Stone (Thu Jan 12 2006 - 10:58:22 CST)
  • John Stone (Thu Jan 12 2006 - 10:57:11 CST)
  • Dan White (Thu Jan 12 2006 - 10:42:38 CST)
  • John Stone (Thu Jan 12 2006 - 09:57:17 CST)
  • Dan White (Thu Jan 12 2006 - 08:13:42 CST)
• mpg image speed
  • Chaitanya Krishna A (Tue Apr 12 2005 - 09:06:44 CDT)
  • Axel Kohlmeyer (Mon Apr 11 2005 - 17:08:05 CDT)
  • John Stone (Mon Apr 11 2005 - 14:44:42 CDT)
  • qun.ma_at_njit.edu (Mon Apr 11 2005 - 14:28:20 CDT)
  • Charles Moad (Mon Apr 11 2005 - 14:23:08 CDT)
  • Chaitanya Krishna A (Mon Apr 11 2005 - 14:19:11 CDT)
  • qun.ma_at_njit.edu (Mon Apr 11 2005 - 13:44:01 CDT)
  • Andre Farias de Moura (Mon Apr 11 2005 - 09:40:46 CDT)
  • Chaitanya Krishna A (Mon Apr 11 2005 - 12:02:09 CDT)
  • Chang, Christopher (Mon Apr 11 2005 - 11:20:24 CDT)
  • John Stone (Mon Apr 11 2005 - 10:00:16 CDT)
  • Marc Q. Ma (Mon Apr 11 2005 - 08:41:56 CDT)
  • Chaitanya Krishna A (Sun Apr 10 2005 - 01:01:08 CDT)
  • Chaitanya Krishna A (Sun Apr 10 2005 - 00:04:34 CDT)
  • Mauricio Carrillo Tripp (Thu Apr 07 2005 - 08:39:14 CDT)
  • Chaitanya Krishna A (Thu Apr 07 2005 - 04:08:54 CDT)
• MSD
  • Hannes Loeffler (Thu May 30 2002 - 01:29:13 CDT)
  • Paul Grayson (Wed May 29 2002 - 11:03:40 CDT)
  • Storr, Mark (Wed May 29 2002 - 10:43:53 CDT)
• MSD calculation
  • Nikhil Maroli (Mon Feb 20 2017 - 06:39:44 CST)
• MSD calculation - Memory saving.
  • Bharat Sharma (Fri Mar 27 2015 - 11:10:26 CDT)
  • Josh Vermaas (Fri Mar 27 2015 - 08:49:36 CDT)
  • Felipe Merino (Fri Mar 27 2015 - 08:30:05 CDT)
  • Bharat Sharma (Fri Mar 27 2015 - 07:33:56 CDT)
• MSD calculation from VMD RMSD plugin.
  • Ranyere Deyler (Wed Mar 16 2011 - 14:33:58 CDT)
  • Axel Kohlmeyer (Wed Mar 16 2011 - 14:23:30 CDT)
  • Ranyere Deyler (Wed Mar 16 2011 - 14:12:45 CDT)
  • Axel Kohlmeyer (Wed Mar 16 2011 - 10:54:41 CDT)
  • Ranyere Deyler (Wed Mar 16 2011 - 09:24:54 CDT)
• MSD for water inside CNT
  • Vermaas, Joshua (Tue Jan 23 2018 - 11:30:12 CST)
  • Suresh Ghimire (Tue Jan 23 2018 - 02:28:15 CST)
• MSD of membrane lipids
  • Villalain Boullon, Jose (Mon Feb 11 2019 - 10:35:46 CST)
• MSMS
  • Peter Holm (Mon Jun 27 2005 - 10:37:57 CDT)
  • John Stone (Mon Jun 27 2005 - 10:01:45 CDT)
  • Peter Holm (Mon Jun 27 2005 - 07:19:22 CDT)
• msms & vmd
  • John Stone (Fri Feb 18 2000 - 12:11:25 CST)
  • Robert Milius (Fri Feb 18 2000 - 11:51:29 CST)
• msms 2.5 and vmd?
  • John Stone (Thu Sep 14 2000 - 13:25:48 CDT)
  • Robert Milius (Thu Sep 14 2000 - 13:09:41 CDT)
• MSMS 2.5.3 is available for VMD users!!
  • John Stone (Fri Oct 06 2000 - 09:25:38 CDT)
• msms and socketPort
  • John Stone (Fri Mar 12 2004 - 17:06:36 CST)
  • Jerry Ebalunode (Fri Mar 12 2004 - 15:49:28 CST)
  • John Stone (Fri Mar 12 2004 - 10:11:26 CST)
  • Jerry Ebalunode (Fri Mar 12 2004 - 07:11:43 CST)
• msms and vmd on amd athlon64.
  • John Stone (Mon Mar 22 2004 - 11:21:55 CST)
  • Michel Sanner (Fri Mar 19 2004 - 18:05:30 CST)
  • Benjamin Goldsteen (Mon Mar 15 2004 - 14:18:16 CST)
  • John Stone (Mon Mar 15 2004 - 12:58:52 CST)
  • Jerry Ebalunode (Mon Mar 15 2004 - 12:49:18 CST)
• MSMS and VMD: vertices discripancy
  • John Stone (Thu Jul 03 2003 - 14:37:27 CDT)
  • John Stone (Tue Jun 17 2003 - 12:51:20 CDT)
  • Sanjeev B.S. (Tue Jun 17 2003 - 13:18:44 CDT)
  • John Stone (Tue Jun 17 2003 - 12:22:39 CDT)
  • Sanjeev B.S. (Tue Jun 17 2003 - 12:24:00 CDT)
  • John Stone (Mon Jun 16 2003 - 18:48:56 CDT)
  • Sanjeev B.S. (Sat Jun 14 2003 - 14:32:38 CDT)
• MSMS calculations
  • John Stone (Thu Aug 25 2005 - 18:10:50 CDT)
  • floquet_at_icsn.cnrs-gif.fr (Thu Aug 25 2005 - 03:52:29 CDT)
• MSMS help
  • John Stone (Mon Apr 03 2000 - 15:19:25 CDT)
  • Andrew Hall (Mon Apr 03 2000 - 15:04:30 CDT)
• MSMS in VMD
  • Andrew Dalke (Wed Oct 15 1997 - 00:30:42 CDT)
  • Axel Berg (Tue Oct 14 1997 - 07:58:11 CDT)
  • Mandar Kulkarni (Fri Feb 28 2020 - 10:02:45 CST)
  • John Stone (Fri Feb 28 2020 - 09:58:08 CST)
  • Mandar Kulkarni (Fri Feb 28 2020 - 07:59:54 CST)
  • Xiao-Ping Zhang (Sat Mar 18 2000 - 14:00:37 CST)
  • Xiao-Ping Zhang (Fri Mar 17 2000 - 08:28:32 CST)
  • John Stone (Fri Mar 17 2000 - 09:16:16 CST)
  • Xiao-Ping Zhang (Fri Mar 17 2000 - 07:53:22 CST)
• MSMS installation
  • John Stone (Mon Jun 08 2009 - 16:09:42 CDT)
  • craig bullington (Mon Jun 08 2009 - 14:27:57 CDT)
• MSMS of selection's contribution to total surface
  • John Stone (Wed Nov 30 2005 - 10:15:45 CST)
  • Eden Duthie (Tue Nov 29 2005 - 18:10:05 CST)
• MSMS on linux and Draw Multiple Frames in VMD 1.8.3
  • John Stone (Thu Apr 14 2005 - 10:27:58 CDT)
  • Dr. Daniel James White PhD (Thu Apr 14 2005 - 09:17:40 CDT)
• MSMS on Windows
  • John Stone (Wed Jan 17 2007 - 01:35:38 CST)
  • Peter Hains (Tue Jan 16 2007 - 23:21:52 CST)
• MSMS plugin for windows
  • Lu Lin (Fri Jan 18 2008 - 03:09:13 CST)
  • John Stone (Thu Jan 17 2008 - 12:56:24 CST)
  • Lu Lin (Thu Jan 17 2008 - 11:47:52 CST)
  • L. Michel Espinoza-Fonseca (Thu Jan 17 2008 - 09:26:26 CST)
  • Lu Lin (Thu Jan 17 2008 - 08:35:55 CST)
• MSMS probe radius and CHARMM VDW radii
  • John Stone (Mon Dec 01 2003 - 15:37:46 CST)
  • Tyler Luchko (Sun Nov 23 2003 - 16:18:10 CST)
• MSMS problem
  • Bogdan Costescu (Wed Dec 07 2005 - 06:56:06 CST)
  • John Stone (Tue Dec 06 2005 - 16:18:31 CST)
  • Michel Sanner (Tue Dec 06 2005 - 15:33:09 CST)
  • Bogdan Costescu (Tue Dec 06 2005 - 11:31:53 CST)
  • John Stone (Mon Dec 05 2005 - 13:56:07 CST)
  • Cojocaru,Vlad (Mon Dec 05 2005 - 13:36:33 CST)
  • Bogdan Costescu (Mon Dec 05 2005 - 13:21:19 CST)
  • Cojocaru,Vlad (Sun Dec 04 2005 - 06:05:43 CST)
  • Cojocaru,Vlad (Sat Dec 03 2005 - 02:40:29 CST)
• msms question...
  • John Stone (Fri Mar 07 2003 - 17:00:41 CST)
  • Lubos Vrbka (Fri Mar 07 2003 - 11:04:44 CST)
  • John Stone (Fri Mar 07 2003 - 09:40:43 CST)
  • Lubos Vrbka (Fri Mar 07 2003 - 07:48:17 CST)
• MSMS under Windows
  • John Stone (Mon Sep 20 2004 - 15:37:30 CDT)
  • Oleg V. Stroganov (Sun Sep 19 2004 - 06:33:40 CDT)
• MSMS variable
  • John Stone (Tue Nov 30 2004 - 16:53:35 CST)
  • Brian Bennion (Tue Nov 30 2004 - 16:48:21 CST)
  • John Stone (Tue Nov 30 2004 - 16:34:41 CST)
  • Brian Bennion (Tue Nov 30 2004 - 13:15:47 CST)
  • Luis Rosales (Mon Nov 29 2004 - 18:38:55 CST)
  • John Stone (Mon Nov 29 2004 - 00:08:22 CST)
  • Luis Rosales (Wed Nov 24 2004 - 16:52:59 CST)
  • Brian Bennion (Wed Nov 24 2004 - 16:23:55 CST)
  • Luis Rosales (Wed Nov 24 2004 - 16:13:44 CST)
  • Brian Bennion (Wed Nov 24 2004 - 10:13:23 CST)
  • John Stone (Wed Nov 24 2004 - 09:51:44 CST)
  • Luis Rosales (Tue Nov 23 2004 - 18:52:35 CST)
• MSMS variable (and VMDMSMSUSEFILE)
  • Luis Rosales (Tue Nov 30 2004 - 19:10:11 CST)
• MSVC Projects Corrupt and Missing
  • Wesley Smith (Sat Jan 26 2008 - 14:51:01 CST)
  • Wesley Smith (Thu Jan 24 2008 - 23:25:14 CST)
  • Wesley Smith (Thu Jan 24 2008 - 22:53:58 CST)
  • John Stone (Thu Jan 24 2008 - 22:45:18 CST)
  • Wesley Smith (Thu Jan 24 2008 - 22:56:03 CST)
  • Axel Kohlmeyer (Thu Jan 24 2008 - 22:42:47 CST)
  • John Stone (Thu Jan 24 2008 - 23:10:27 CST)
  • Wesley Smith (Thu Jan 24 2008 - 22:18:09 CST)
• much larger diameter of ssDNA,
  • Aliasghar Alizadeh-Mojarad (Sat Jun 04 2016 - 04:22:41 CDT)
• Muhammad Radifar
  • Muhammad Radifar (Wed Jul 24 2013 - 11:58:37 CDT)
• Multi-core CPU does not work with VMD.
  • John Stone (Mon Aug 08 2022 - 22:14:56 CDT)
  • toshiaki.tomimori_at_uniadex.co.jp (Mon Aug 08 2022 - 02:59:23 CDT)
  • John Stone (Sat Aug 06 2022 - 01:34:08 CDT)
  • toshiaki.tomimori_at_uniadex.co.jp (Wed Aug 03 2022 - 06:10:01 CDT)
• Multimodel PDB files with different models (again)?
  • Boris Steipe (Tue May 18 2010 - 16:19:46 CDT)
• Multimodel PDB files with Different Models?
  • John Stone (Thu Jun 25 2009 - 13:11:30 CDT)
  • Kevin Wu (Wed Jun 24 2009 - 21:05:30 CDT)
• multiple alignment tool
  • Dan Wright (Fri Feb 04 2005 - 16:23:32 CST)
  • John Stone (Thu Feb 03 2005 - 14:22:49 CST)
  • Klaus Hoffmeier (Thu Feb 03 2005 - 10:59:10 CST)
  • Klaus Hoffmeier (Thu Feb 03 2005 - 10:30:52 CST)
• multiple attempts before vmd starts up
  • klsale (Thu Oct 18 2007 - 13:35:36 CDT)
  • Boris Steipe (Thu Oct 18 2007 - 13:47:21 CDT)
  • ZT Yew (Thu Oct 18 2007 - 07:03:23 CDT)
  • Boris Steipe (Thu Oct 18 2007 - 00:07:55 CDT)
  • ZT Yew (Wed Oct 17 2007 - 20:25:55 CDT)
  • John Stone (Wed Oct 17 2007 - 20:34:41 CDT)
• multiple automated calls to NAMD
  • Axel Kohlmeyer (Fri Jun 10 2005 - 02:17:32 CDT)
  • nordgren_at_sas.upenn.edu (Thu Jun 09 2005 - 21:56:31 CDT)
  • Axel Kohlmeyer (Thu Jun 09 2005 - 02:38:35 CDT)
  • nordgren_at_sas.upenn.edu (Wed Jun 08 2005 - 20:57:56 CDT)
• multiple cells representation
  • John Stone (Mon Feb 24 2003 - 22:04:47 CST)
  • Justin Gullingsrud (Mon Feb 24 2003 - 20:31:07 CST)
  • Ioana Cozmuta (Mon Feb 24 2003 - 19:19:32 CST)
• multiple colors for a single atom
  • BIN ZHANG (Mon Feb 23 2009 - 11:55:48 CST)
  • John Stone (Mon Feb 23 2009 - 09:06:43 CST)
  • BIN ZHANG (Mon Feb 23 2009 - 00:05:50 CST)
• Multiple data files on command line does not seem to work
  • John Stone (Tue May 16 2006 - 10:58:05 CDT)
  • Rob (Mon May 15 2006 - 22:36:09 CDT)
• multiple dx frames
  • Leonardo Trabuco (Wed Feb 28 2007 - 14:51:16 CST)
  • Axel Kohlmeyer (Wed Feb 28 2007 - 14:42:34 CST)
  • Leonardo Trabuco (Wed Feb 28 2007 - 14:16:32 CST)
  • Jim Fonseca (Wed Feb 28 2007 - 13:49:12 CST)
• multiple entry mol2 file
  • John Stone (Wed Sep 15 2004 - 16:45:38 CDT)
  • John Stone (Tue Aug 17 2004 - 12:56:43 CDT)
  • Jerry Ebalunode (Tue Aug 17 2004 - 07:15:05 CDT)
• multiple id's
  • Jim Phillips (Mon Jan 19 2004 - 06:50:12 CST)
  • himanshu chandola (Mon Jan 19 2004 - 15:44:29 CST)
• Multiple incompatible definitions warning
  • Subramanian Vaitheeswaran (Thu Nov 06 2008 - 11:25:01 CST)
  • Peter Freddolino (Thu Nov 06 2008 - 12:04:06 CST)
• multiple parameterized ligands
  • Tim Lo (Fri Oct 02 2015 - 21:35:39 CDT)
  • Prof. Eddie (Tue Sep 29 2015 - 10:42:58 CDT)
  • Prof. Eddie (Tue Sep 29 2015 - 10:39:22 CDT)
  • Mayne, Christopher G (Mon Sep 28 2015 - 21:26:00 CDT)
  • Chitrak Gupta (Mon Sep 28 2015 - 20:56:21 CDT)
  • Prof. Eddie (Mon Sep 28 2015 - 18:57:37 CDT)
• multiple peptides simulation
  • Noriaki Okimoto (Mon Apr 10 2006 - 14:14:18 CDT)
• Multiple Programmer Positions to develop VMD and NAMD
  • Tajkhorshid, Emad (Sun Sep 11 2022 - 10:15:14 CDT)
• multiple proteins
  • Lyman K Monroe (Tue Mar 25 2014 - 20:58:41 CDT)
• Multiple proteins in MDFF?
  • Ryan McGreevy (Wed Mar 26 2014 - 11:25:55 CDT)
  • Lyman K Monroe (Tue Mar 25 2014 - 20:59:49 CDT)
• Multiple residues at same position
  • Peter Freddolino (Sun Apr 16 2006 - 08:38:30 CDT)
  • snoze pa (Sun Apr 16 2006 - 02:01:35 CDT)
• multiple residues with same resid and problem with solvation using VMD
  • simao.pereira_at_di3.units.it (Fri Aug 17 2012 - 09:26:43 CDT)
  • AnkiReddy katha (Fri Aug 17 2012 - 06:36:59 CDT)
• Multiple Sequence Alignment Extension
  • John Stone (Tue Dec 14 2004 - 08:55:41 CST)
  • Klaus Hoffmeier (Tue Dec 14 2004 - 08:06:22 CST)
• Multiple Stream Files: What Order?
  • Bryan Roessler (Wed Dec 14 2011 - 11:20:25 CST)
• multiple structure PDB files
  • Stéphane Teletchéa (Wed Sep 25 2002 - 03:17:31 CDT)
  • John Stone (Tue Sep 24 2002 - 14:19:01 CDT)
• multiple topology files and resetpsf
  • Goldsmith, Jacob (Wed Feb 09 2011 - 07:38:42 CST)
  • Axel Kohlmeyer (Tue Feb 08 2011 - 16:38:35 CST)
  • Goldsmith, Jacob (Tue Feb 08 2011 - 10:11:54 CST)
• multiple vector in smd
  • Axel Kohlmeyer (Mon Jun 10 2013 - 23:55:51 CDT)
  • yp sun (Mon Jun 10 2013 - 22:34:44 CDT)
• multiplot : integration of undrawing command (?)
  • Axel Kohlmeyer (Sun Feb 08 2009 - 23:48:49 CST)
  • Nadja Lederer (Thu Feb 05 2009 - 05:14:43 CST)
• multiplot: control reaction for click on datapoints?
  • Nadja Lederer (Thu Nov 27 2008 - 10:09:53 CST)
  • Nadja Lederer (Wed Nov 26 2008 - 14:00:18 CST)
  • Nadja Lederer (Wed Nov 26 2008 - 11:12:20 CST)
  • Nadja Lederer (Wed Nov 26 2008 - 02:34:31 CST)
• multiplying maps in non-orthogonal coordinates
  • Tristan Croll (Tue May 13 2014 - 21:26:14 CDT)
  • Tristan Croll (Tue May 13 2014 - 20:42:57 CDT)
• multiseq
  • Ramin Ekhteiari (Fri Jun 21 2013 - 08:24:23 CDT)
  • Ramin Ekhteiari (Fri Jun 21 2013 - 03:13:06 CDT)
  • Wendy González (Mon Dec 03 2007 - 07:11:24 CST)
  • John Stone (Sun Dec 02 2007 - 22:57:53 CST)
  • Wendy González (Fri Nov 30 2007 - 15:57:18 CST)
• Multiseq / stamp alignment on Windows 1.9.4alpha
  • John Stone (Thu Dec 02 2021 - 14:39:05 CST)
  • Stefan Boresch (Thu Dec 02 2021 - 13:55:59 CST)
  • John Stone (Thu Dec 02 2021 - 13:50:06 CST)
  • Stefan Boresch (Thu Dec 02 2021 - 13:05:28 CST)
  • John Stone (Thu Dec 02 2021 - 11:13:07 CST)
  • John Stone (Thu Dec 02 2021 - 11:19:23 CST)
  • Raman Preet Singh (Thu Dec 02 2021 - 07:27:27 CST)
  • Stefan Boresch (Thu Dec 02 2021 - 03:49:17 CST)
  • John Stone (Wed Dec 01 2021 - 23:35:30 CST)
  • Stefan Boresch (Wed Dec 01 2021 - 03:23:47 CST)
  • John Stone (Wed Dec 01 2021 - 00:49:28 CST)
  • Phillip Compeau (Tue Nov 30 2021 - 10:27:03 CST)
  • Stefan Boresch (Tue Nov 30 2021 - 07:45:40 CST)
• multiseq and fasta files from pdb
  • John Stone (Mon Oct 05 2009 - 21:14:10 CDT)
  • Vlad Cojocaru (Thu Oct 01 2009 - 04:26:01 CDT)
• MultiSeq conflicting with DYLD_LYBRARY_PATH
  • fabio trovato (Thu Jan 18 2018 - 06:40:54 CST)
  • Ajasja LjubetiÄ� (Thu Jan 18 2018 - 06:12:12 CST)
  • fabio trovato (Thu Jan 18 2018 - 04:05:02 CST)
• MultiSeq Database Downloading Error
  • Alexander Howard (Fri Jul 30 2021 - 19:03:22 CDT)
• Multiseq display settings
  • Felipe Montecinos (Mon May 02 2016 - 09:49:21 CDT)
  • Felipe Montecinos (Fri Jul 10 2015 - 13:16:57 CDT)
  • Lai, Jonathan (Fri Jul 10 2015 - 12:57:10 CDT)
  • Felipe Montecinos (Fri Jul 10 2015 - 11:28:23 CDT)
• multiseq doesn't respond to ctrl key correctly
  • Kirby Vandivort (Fri Feb 10 2012 - 10:19:22 CST)
  • charles sun (Thu Feb 09 2012 - 22:58:45 CST)
• multiseq doesn't work
  • Scazzocchio, Claudio (Tue Apr 19 2016 - 03:06:21 CDT)
  • sunyeping (Mon Apr 18 2016 - 21:21:55 CDT)
• Multiseq doesn't work on mac
  • Carlos Guardia (Wed Jul 06 2022 - 11:45:26 CDT)
  • Scazzocchio, Claudio (Sat Jul 02 2022 - 01:04:02 CDT)
  • Carlos Guardia (Fri Jul 01 2022 - 17:38:05 CDT)
• MultiSeq error
  • Andreas Tosstorff (Wed Jun 29 2016 - 03:26:50 CDT)
  • John Stone (Wed Apr 15 2009 - 13:57:57 CDT)
  • Karne, Sai Harish Babu (Wed Apr 15 2009 - 13:48:18 CDT)
• Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array'
  • Elijah Roberts (Wed Oct 22 2008 - 22:24:11 CDT)
  • Perreault, Roger Edward (Wed Oct 22 2008 - 20:34:57 CDT)
• Multiseq in text mode
  • Ekta Khurana (Wed Feb 09 2011 - 13:23:19 CST)
  • Anurag Sethi (Tue Feb 08 2011 - 12:11:29 CST)
  • Kirby Vandivort (Tue Feb 08 2011 - 11:49:43 CST)
  • Leonardo Trabuco (Tue Feb 08 2011 - 08:18:44 CST)
  • Ekta Khurana (Tue Feb 08 2011 - 08:06:16 CST)
  • Jérôme Hénin (Tue Feb 08 2011 - 03:43:39 CST)
  • Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
  • John Stone (Mon Feb 07 2011 - 20:30:11 CST)
  • Axel Kohlmeyer (Mon Feb 07 2011 - 19:33:48 CST)
  • Ekta Khurana (Mon Feb 07 2011 - 13:11:57 CST)
• MultiSeq on the windows vista OS
  • Alexandr Isayev (Mon Sep 24 2007 - 14:25:00 CDT)
  • Lhee, SangMoon (Mon Sep 24 2007 - 13:30:25 CDT)
• MultiSeq QR structure factorization on the command line
  • Josh Vermaas (Wed Jun 29 2022 - 20:47:32 CDT)
  • Christian Seitz (Wed Jun 29 2022 - 18:23:55 CDT)
  • Vermaas, Josh (Tue Jun 28 2022 - 16:03:06 CDT)
  • Christian Seitz (Tue Jun 28 2022 - 14:07:41 CDT)
• Multiseq question
  • Tomek Wlodarski (Tue Nov 24 2009 - 05:17:59 CST)
  • Boris Steipe (Mon Nov 23 2009 - 09:48:34 CST)
  • Tomek Wlodarski (Mon Nov 23 2009 - 05:43:14 CST)
  • John Stone (Mon Nov 16 2009 - 15:28:45 CST)
  • Tomek Wlodarski (Sat Nov 14 2009 - 08:02:43 CST)
• Multiseq refusing to load a structure due to taxonomy problem
  • Elijah Roberts (Tue Jul 29 2008 - 13:17:04 CDT)
  • Robison, Keith (Tue Jul 29 2008 - 13:32:19 CDT)
  • Robison, Keith (Tue Jul 29 2008 - 08:22:24 CDT)
• Multiseq unusable on M1 Mac
  • John Stone (Fri Oct 01 2021 - 13:04:50 CDT)
  • Raul Araya (Fri Oct 01 2021 - 07:55:09 CDT)
• multiseq/stamp alignment of coiled coil bundle and homo-dimer
  • Kirby Vandivort (Fri Jul 30 2010 - 14:30:05 CDT)
  • Ian Stokes-Rees (Fri Jul 30 2010 - 13:14:47 CDT)
  • Kirby Vandivort (Thu Jul 29 2010 - 10:33:26 CDT)
  • John Stone (Thu Jul 29 2010 - 10:21:11 CDT)
  • Kirby Vandivort (Wed Jul 28 2010 - 16:36:10 CDT)
  • John Stone (Wed Jul 28 2010 - 16:23:51 CDT)
  • Ian Stokes-Rees (Tue Jul 27 2010 - 16:54:53 CDT)
  • Ian Stokes-Rees (Tue Jul 27 2010 - 14:37:02 CDT)
• Multiseq: Perform peptide trajectory clustering
  • Peter Mawanga (Wed Mar 07 2018 - 11:09:19 CST)
• MultiSeq: STAMP fails
  • Vermaas, Joshua (Fri Sep 27 2019 - 13:23:03 CDT)
  • Aaron Oakley (Thu Sep 26 2019 - 20:40:31 CDT)
• multistructure XYZ
  • John Stone (Thu Oct 28 2004 - 17:32:28 CDT)
  • Herbert Georg (Thu Oct 28 2004 - 16:11:31 CDT)
  • John Stone (Thu Oct 28 2004 - 16:47:07 CDT)
  • Herbert Georg (Thu Oct 28 2004 - 15:50:12 CDT)
  • Herbert Georg (Thu Oct 28 2004 - 15:46:59 CDT)
  • John Stone (Thu Oct 28 2004 - 16:19:47 CDT)
  • Herbert Georg (Thu Oct 28 2004 - 14:52:58 CDT)
• mutate amino acid
  • hamze rahimi (Sun Jun 19 2011 - 02:25:05 CDT)
• mutate by D-residues...
  • Axel Kohlmeyer (Fri Jun 27 2008 - 20:47:58 CDT)
  • Yasser Almeida Hernández (Fri Jun 27 2008 - 16:44:25 CDT)
  • Yasser Almeida Hernández (Fri Jun 27 2008 - 16:45:00 CDT)
• Mutate nucleotides
  • Maurizio Olla (Tue Jan 29 2008 - 23:51:05 CST)
• mutate residue
  • Peter Freddolino (Thu Aug 09 2007 - 21:29:10 CDT)
  • xzhao_at_uiuc.edu (Thu Aug 09 2007 - 21:02:15 CDT)
• Mutate Residue Extension
  • Josh Vermaas (Tue Mar 04 2014 - 20:28:34 CST)
  • Daou, Joseph A (Tue Mar 04 2014 - 19:53:37 CST)
  • Josh Vermaas (Tue Mar 04 2014 - 15:39:16 CST)
  • Daou, Joseph A (Tue Mar 04 2014 - 14:25:38 CST)
• Mutated model development in VMD
  • SYEDA SABIHA SULTANA LUBNA . (Thu Aug 19 2021 - 06:34:02 CDT)
• mutating a residue
  • Research Jubilant (Wed May 14 2014 - 22:28:39 CDT)
• Mutating a residue to a nonstandard amino acid
  • Ajasja LjubetiÄ� (Wed Jul 20 2011 - 16:57:49 CDT)
  • Alisha \ (Tue Jul 19 2011 - 16:14:56 CDT)
• Mutation of Amino Acid
  • Akash Mondal (Sat Aug 20 2022 - 01:11:34 CDT)
• Mutator plugin console
  • John Stone (Thu Feb 25 2010 - 16:53:16 CST)
  • q (Mon Feb 22 2010 - 07:04:50 CST)
• Mutator plugin error
  • Thomas Christott (Mon Jul 29 2013 - 02:47:01 CDT)
  • Thomas Christott (Tue Jul 23 2013 - 05:54:51 CDT)
• mutator plugin generates extra bond for tip3
  • Burgess, Don E (Fri Sep 30 2011 - 11:49:26 CDT)
• Mutator Plugin Patching
  • Thomas Freeman (Thu Mar 03 2011 - 12:21:01 CST)
  • JC Gumbart (Wed Mar 02 2011 - 23:48:24 CST)
  • Thomas Freeman (Wed Mar 02 2011 - 15:27:21 CST)
• Mutator: Losing Chromophore
  • Carmen Valladares (Wed Aug 19 2009 - 19:14:57 CDT)
• My Protein is a homology model
  • John Stone (Wed Dec 09 2020 - 13:55:59 CST)
  • Tiglath Moradkhan (Wed Dec 09 2020 - 13:32:18 CST)
• my solution to the freezing problem.
  • Tommy Wang (Wed May 15 2002 - 20:32:30 CDT)
• N-methylated amino acid topologies
  • Joakim Swedberg (Wed May 02 2012 - 19:20:41 CDT)
• NAMD .coor file to pdb, WRITE PDB ERROR.
  • Vermaas, Joshua (Wed Oct 09 2019 - 08:51:59 CDT)
  • Vermaas, Joshua (Thu Oct 03 2019 - 11:44:50 CDT)
  • Amir Suhail (Thu Oct 03 2019 - 05:27:35 CDT)
• NAMD 2.11 Cuda does not work with Quadro FX 3800
  • Greipel.Joachim_at_mh-hannover.de (Thu Mar 10 2016 - 01:57:06 CST)
• NAMD 2.2 Release Announcement
  • Jim Phillips (Fri Sep 29 2000 - 18:32:22 CDT)
• NAMD 2.2b1 Release Announcement
  • Jim Phillips (Tue Sep 05 2000 - 17:39:24 CDT)
• NAMD 2.3 Release Announcement
  • Jim Phillips (Thu Aug 02 2001 - 14:36:22 CDT)
• NAMD 2.3b1 Release
  • Jim Phillips (Fri Feb 23 2001 - 11:01:55 CST)
• NAMD 2.4 Released
  • Jim Phillips (Mon Mar 11 2002 - 14:24:39 CST)
• NAMD 2.4b1 released
  • Jim Phillips (Mon Jan 28 2002 - 16:44:30 CST)
• NAMD 2.4b2 Release Announcement
  • Jim Phillips (Fri Feb 22 2002 - 12:56:35 CST)
• NAMD 2.5 Released
  • Jim Phillips (Mon Sep 29 2003 - 14:02:48 CDT)
• NAMD 2.5b2 Released
  • Jim Phillips (Mon Sep 15 2003 - 19:53:01 CDT)
• NAMD 2.5b3 Released
  • Jim Phillips (Fri Sep 19 2003 - 18:02:58 CDT)
• NAMD 2.6 released
  • Jim Phillips (Thu Aug 31 2006 - 17:13:40 CDT)
• NAMD 2.6b1 Released
  • Jim Phillips (Tue Aug 02 2005 - 12:31:02 CDT)
• NAMD 2.6b2 released
  • Jim Phillips (Sun Aug 20 2006 - 15:43:38 CDT)
• NAMD 2.8 and PLUMED 1.3
  • candy deck (Thu Aug 30 2012 - 07:23:27 CDT)
  • Chris Harrison (Thu Aug 30 2012 - 08:21:55 CDT)
• NAMD and FFTK on a Mac
  • Timothy Click (Wed Jun 06 2018 - 01:29:02 CDT)
  • Mayne, Christopher G (Tue Jun 05 2018 - 22:39:41 CDT)
  • Timothy Click (Tue Jun 05 2018 - 21:38:29 CDT)
  • JC Gumbart (Sun Jun 03 2018 - 22:26:04 CDT)
  • JC Gumbart (Sat Jun 02 2018 - 20:07:26 CDT)
  • tclick_at_nctu.edu.tw (Fri Jun 01 2018 - 07:24:41 CDT)
• NAMD and VMD Armv8-A
  • Joey Gehring (Wed Jan 29 2020 - 23:38:48 CST)
  • John Stone (Thu Jan 23 2020 - 10:35:25 CST)
  • John Stone (Thu Jan 23 2020 - 10:50:49 CST)
  • Joey Gehring (Thu Jan 23 2020 - 10:41:21 CST)
  • Joey Gehring (Wed Jan 22 2020 - 23:20:58 CST)
  • Joey Gehring (Wed Jan 22 2020 - 15:11:10 CST)
  • John Stone (Wed Jan 22 2020 - 14:53:10 CST)
  • Joey Gehring (Wed Jan 22 2020 - 13:45:43 CST)
  • John Stone (Wed Jan 22 2020 - 12:38:31 CST)
  • Joey Gehring (Tue Jan 21 2020 - 20:24:12 CST)
• namd callback command
  • Will Sheffler (Mon Aug 05 2002 - 03:51:14 CDT)
• NAMD can't malloc() error
  • Axel Kohlmeyer (Mon Oct 19 2009 - 13:29:20 CDT)
  • Ronald Salesky (Mon Oct 19 2009 - 12:44:55 CDT)
• namd CG minimization error: unable to find angle parameters for nxg nxx nxg
  • Francesco Pietra (Fri Dec 11 2009 - 09:52:43 CST)
  • Peter Freddolino (Thu Dec 10 2009 - 15:06:05 CST)
  • Francesco Pietra (Thu Dec 10 2009 - 10:27:13 CST)
• NAMD Check points
  • Brian Radak (Fri Dec 09 2016 - 10:17:47 CST)
  • Peter Freddolino (Fri Dec 09 2016 - 10:12:25 CST)
  • Naeem Mahmood Ashraf (Fri Dec 09 2016 - 08:25:29 CST)
• NAMD Color By Velocity
  • Axel Kohlmeyer (Tue Apr 17 2018 - 14:03:22 CDT)
  • McGuire, Kelly (Tue Apr 17 2018 - 13:28:19 CDT)
• NAMD constant pressure/temp advice
  • David Chalmers (Mon Sep 01 2003 - 03:06:35 CDT)
• NAMD Developer Meeting 2019
  • giuseppe_at_ks.uiuc.edu (Wed Jun 19 2019 - 16:59:58 CDT)
• NAMD developer workshop - Chicago, May 22-23, 2017
  • João Ribeiro (Tue Apr 25 2017 - 07:45:59 CDT)
  • João Ribeiro (Tue Apr 18 2017 - 07:45:04 CDT)
• NAMD Developer Workshop at Chicago IL, May 22-23, 2017
  • João Ribeiro (Thu Apr 06 2017 - 08:18:23 CDT)
  • João Ribeiro KS (Fri Feb 24 2017 - 19:23:08 CST)
• NAMD Developer Workshop at Urbana IL, June 11-12, 2018
  • João Ribeiro (Wed May 02 2018 - 09:17:31 CDT)
  • João Ribeiro (Tue Apr 24 2018 - 08:57:57 CDT)
  • João Ribeiro (Wed Feb 07 2018 - 10:46:41 CST)
• NAMD energy
  • Shubhadip Das (Thu Aug 27 2015 - 09:15:34 CDT)
• NAMD Energy - Hexagonal Cell
  • John Stone (Thu Mar 15 2007 - 14:03:48 CDT)
  • Alessandro Cembran (Mon Mar 12 2007 - 18:10:14 CDT)
• NAMD energy calculation
  • Ramin Ekhteiari (Tue Jul 01 2014 - 12:07:47 CDT)
  • John Stone (Mon Jun 30 2014 - 22:59:28 CDT)
  • Ramin Ekhteiari (Wed Jun 25 2014 - 11:45:33 CDT)
• NAMD energy on dihedrals
  • Joyce Yang (Tue Sep 09 2014 - 10:38:00 CDT)
• NAMD energy plugin
  • Josh Vermaas (Wed Jun 04 2014 - 13:54:51 CDT)
  • Ramin Ekhteiari (Wed Jun 04 2014 - 12:45:36 CDT)
  • Nicholas Musolino (Thu Aug 05 2010 - 10:17:23 CDT)
  • Axel Kohlmeyer (Thu Aug 05 2010 - 08:53:18 CDT)
  • Mert Gür (Thu Aug 05 2010 - 08:51:04 CDT)
  • politr_at_huji.ac.il (Thu Aug 05 2010 - 07:41:37 CDT)
  • L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 16:10:36 CST)
  • Peter Freddolino (Sun Feb 10 2008 - 15:55:50 CST)
  • L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 15:44:04 CST)
  • Peter Freddolino (Wed Aug 15 2007 - 20:39:09 CDT)
  • Peter Freddolino (Wed Aug 15 2007 - 20:36:13 CDT)
  • Cesar Luis Avila (Wed Aug 15 2007 - 11:58:41 CDT)
  • Cesar Luis Avila (Wed Aug 15 2007 - 11:15:17 CDT)
  • Cesar Luis Avila (Wed Aug 15 2007 - 08:22:59 CDT)
  • Peter Freddolino (Wed Aug 15 2007 - 11:50:55 CDT)
• NAMD energy plugin - dielectric constant
  • Ramin Ekhteiari (Mon Jul 07 2014 - 14:59:42 CDT)
• namd energy plugin error: toplevel
  • Axel Kohlmeyer (Tue Jan 11 2011 - 09:22:22 CST)
  • Michela Candotti (Tue Jan 11 2011 - 04:09:14 CST)
• NAMD energy plugin question
  • Peter Freddolino (Mon Apr 05 2010 - 20:44:59 CDT)
  • Rachel Ruskin (Mon Apr 05 2010 - 12:02:44 CDT)
• NAMD energy plugin reference
  • Francesco Pietra (Mon Jun 08 2020 - 11:00:54 CDT)
  • Peter Freddolino (Mon Jun 08 2020 - 10:05:07 CDT)
  • Francesco Pietra (Mon Jun 08 2020 - 09:53:58 CDT)
  • Peter Freddolino (Sat Jun 06 2020 - 22:21:32 CDT)
  • John Stone (Sat Jun 06 2020 - 00:23:53 CDT)
  • Aashish Bhatt (Mon Jun 01 2020 - 06:30:56 CDT)
• NAMD Energy Plugin: Cutoff error
  • Peter Mawanga (Mon Jun 04 2018 - 10:24:09 CDT)
  • Fotis Baltoumas (Wed May 23 2018 - 09:37:49 CDT)
  • Peter Mawanga (Wed May 23 2018 - 08:42:05 CDT)
• NAMD failure on Berendsen pressure scheme
  • Vlad Cojocaru (Wed Jul 30 2003 - 07:53:39 CDT)
• NAMD from command line args
  • John Stone (Sat May 06 2006 - 21:25:47 CDT)
  • Chang Hu (Sat May 06 2006 - 21:09:53 CDT)
• namd gui problem
  • sarah k (Fri May 14 2010 - 00:16:34 CDT)
  • Joshua Adelman (Tue May 11 2010 - 07:26:58 CDT)
  • sarah k (Tue May 11 2010 - 02:29:02 CDT)
• namd help?
  • Axel Kohlmeyer (Tue Feb 05 2008 - 12:54:36 CST)
  • Corenflos, Steven Charles (Tue Feb 05 2008 - 12:15:47 CST)
• NAMD IMD large protein model
  • John Stone (Fri Jun 13 2003 - 15:53:15 CDT)
  • Marc Baaden (Fri Jun 13 2003 - 05:35:45 CDT)
  • Jim Phillips (Thu Jun 12 2003 - 11:32:45 CDT)
  • Marc Baaden (Thu Jun 12 2003 - 10:23:38 CDT)
  • Dr. Daniel James White PhD (Thu Jun 12 2003 - 08:51:23 CDT)
• NAMD minimization error
  • sseefeld_at_uwm.edu (Tue Aug 15 2006 - 10:01:28 CDT)
  • Leonardo Trabuco (Sat Aug 12 2006 - 18:52:49 CDT)
  • sseefeld_at_uwm.edu (Sat Aug 12 2006 - 18:45:17 CDT)
  • JC Gumbart (Sat Aug 12 2006 - 17:29:49 CDT)
  • JC Gumbart (Sat Aug 12 2006 - 12:02:28 CDT)
  • sseefeld_at_uwm.edu (Sat Aug 12 2006 - 11:50:42 CDT)
• namd minimization looking for wrong angle
  • Francesco Pietra (Thu Nov 18 2021 - 02:27:31 CST)
• namd plot not showing full range of data?
  • Olya Kravchenko (Fri Jun 30 2017 - 15:38:45 CDT)
• Namd Plot Plugin
  • Dani (Thu Aug 20 2015 - 13:27:57 CDT)
  • Dani (Thu Aug 20 2015 - 13:26:33 CDT)
  • Richard Wood (Thu Aug 20 2015 - 12:35:54 CDT)
  • Ajasja LjubetiÄ� (Thu Aug 20 2015 - 10:37:12 CDT)
  • Daniela Rivas (Thu Aug 20 2015 - 08:54:58 CDT)
• NAMD problem (ReceiveDatagram: recv: Resource temporarily unavailable:)
  • Reuter Nathalie (Wed Dec 12 2001 - 11:20:53 CST)
• NAMD RBCG Tutorial dssp
  • Isuru Herath (Sun Jan 10 2021 - 12:58:16 CST)
• namd restraints question
  • Vlad Cojocaru (Mon Jul 28 2003 - 14:54:28 CDT)
• NAMD setup for organic compounds
  • Sasha Buzko (Thu Jul 09 2009 - 19:17:09 CDT)
  • Peter Freddolino (Thu Jul 09 2009 - 19:07:56 CDT)
  • Sasha Buzko (Thu Jul 09 2009 - 11:46:48 CDT)
• NAMD simulation
  • Denish Poudyal (Sun Mar 25 2018 - 20:25:03 CDT)
• NAMD support for MNDO semi-empirical model
  • Chandra Ramananjara (Mon May 15 2006 - 10:34:07 CDT)
• NAMD to Amber
  • John Stone (Thu Apr 06 2006 - 09:49:39 CDT)
  • AYTUG TUNCEL (Thu Apr 06 2006 - 08:46:10 CDT)
• NAMD trajectories in VMD
  • Axel Kohlmeyer (Fri Oct 26 2007 - 12:22:32 CDT)
  • Samuel Flores (Fri Oct 26 2007 - 11:51:26 CDT)
• NAMD tutorial for Windows problem reading pgn file from vmd tkconsole
  • Eric H. Lee (Fri Aug 21 2009 - 17:13:21 CDT)
  • Eric H. Lee (Fri Aug 21 2009 - 16:40:52 CDT)
  • Carmen Valladares (Fri Aug 21 2009 - 16:26:04 CDT)
  • John Stone (Fri Aug 21 2009 - 16:30:30 CDT)
• NAMD unit cell data
  • Peter Jones (Thu Jul 20 2006 - 00:43:24 CDT)
• NAMD, IMD, VMD and interaction
  • John Stone (Mon Sep 29 2003 - 15:11:40 CDT)
  • Jeroen Akershoek (Mon Sep 29 2003 - 09:32:29 CDT)
• NAMD-GPU
  • Ramin Ekhteiari (Wed May 14 2014 - 07:19:10 CDT)
• namd-I : Constraint failure in RATTLE algorithm for atom 268
  • Ajasja LjubetiÄ� (Fri Oct 29 2010 - 01:41:51 CDT)
  • surendra jain (Thu Oct 28 2010 - 23:39:30 CDT)
• NAMD-L mailing list
  • Jim Phillips (Tue Oct 07 2003 - 15:15:41 CDT)
• namd-l-outgoing2@halifax.ks.uiuc.edu
  • lily jin (Wed Jun 20 2007 - 15:25:56 CDT)
• namd-l: .coor and .vel output files not generated
  • Josh Vermaas (Thu Apr 09 2020 - 22:04:49 CDT)
• namd-l: .COOR TO PDB FILE
  • JC Gumbart (Sat Aug 13 2011 - 01:29:04 CDT)
• namd-l: a display problem
  • L. Michel Espinoza-Fonseca (Thu Mar 09 2006 - 10:53:08 CST)
• namd-l: a name quesiton
  • Leonardo G. Trabuco (Sat Apr 08 2006 - 13:15:56 CDT)
• namd-l: abnormal water surface after nvt and npt for POPC membrane
  • Axel Kohlmeyer (Wed Oct 28 2009 - 10:55:16 CDT)
• namd-l: Aggregation related analysis scripts
  • Jérôme Hénin (Tue Feb 24 2015 - 09:39:01 CST)
• namd-l: Aligning structures
  • Luis Gracia (Fri Mar 10 2006 - 08:45:18 CST)
  • EPF \(Esben Peter Friis\) (Fri Mar 10 2006 - 01:34:40 CST)
  • Peter Freddolino (Thu Mar 09 2006 - 21:37:05 CST)
• namd-l: Analysis plugins for Martini Coarse Grained protein simulations
  • Fotis Baltoumas (Sat Feb 07 2015 - 05:25:50 CST)
• namd-l: Announcement: 'Hands On' Workshop on Computational Biophysics (Berkeley, CA, Aug 3-7, 2015)
  • Sourav Ray (Wed May 20 2015 - 00:33:00 CDT)
• namd-l: Assigning Partial Charges to FE in Active Site Superoxide Dismutase.
  • John Stone (Thu Jan 24 2013 - 10:54:14 CST)
  • JC Gumbart (Wed Jan 23 2013 - 14:26:59 CST)
• namd-l: Atom movement within a range of Z value
  • Eduardo Cruz-Chu (Tue May 11 2010 - 15:45:59 CDT)
  • Axel Kohlmeyer (Tue May 11 2010 - 15:27:44 CDT)
• namd-l: Atomselect within radial pair distribution function g(r)
  • Chitrak Gupta (Wed Sep 30 2015 - 08:09:16 CDT)
• namd-l: bilayer thickness in simulation of POPC membranes
  • maria goranovic (Mon Aug 13 2007 - 09:16:09 CDT)
  • maria goranovic (Mon Aug 13 2007 - 07:55:48 CDT)
• namd-l: building a MARTINI bilayer
  • Peter Freddolino (Wed Apr 21 2010 - 13:16:00 CDT)
• namd-l: bulk density in RDF.tcl
  • griadi_at_utalca.cl (Wed Mar 29 2006 - 16:55:07 CST)
• namd-l: Can't find C-PDB bond parameters
  • JC Gumbart (Mon Feb 15 2010 - 12:06:41 CST)
  • Francesco Pietra (Mon Feb 15 2010 - 11:44:52 CST)
  • JC Gumbart (Mon Feb 15 2010 - 08:15:53 CST)
• namd-l: catdcd and dcdunitcell
  • Joshua D. Moore (Mon Jul 25 2005 - 14:16:16 CDT)
  • John Stone (Mon Jul 25 2005 - 13:50:03 CDT)
  • Joshua D. Moore (Fri Jul 22 2005 - 16:04:00 CDT)
• namd-l: cff91 force field in namd + A Question
  • Ahmet Bakan (Wed Aug 25 2004 - 10:53:59 CDT)
• namd-l: Changing the Secondary Structure of a Protein
  • Peter Freddolino (Sun Dec 28 2008 - 08:48:38 CST)
  • JC Gumbart (Sun Dec 28 2008 - 08:55:03 CST)
• namd-l: charm27 forcefield_topology
  • Peter Freddolino (Wed Feb 25 2009 - 15:09:23 CST)
• namd-l: conformational alignment
  • Giovanni Bellesia (Wed Mar 30 2005 - 16:40:36 CST)
• namd-l: connect a spring between all the atoms present in pdb structure
  • Axel Kohlmeyer (Sat Aug 04 2012 - 13:21:27 CDT)
• namd-l: CoordinateTransformation
  • Jerome Henin (Sun Sep 03 2006 - 17:54:17 CDT)
• namd-l: counterion software
  • mashaojie163 (Mon Oct 11 2004 - 01:30:48 CDT)
• namd-l: Creating topology for carbon nanotube / any new structure
  • prateeksha s (Tue Dec 18 2007 - 23:10:42 CST)
• namd-l: dcd files generated with catdcd
  • J. Rui Rodrigues (Fri Apr 30 2004 - 14:02:49 CDT)
  • Giovanni (Fri Apr 30 2004 - 13:08:33 CDT)
  • John Stone (Fri Apr 30 2004 - 12:47:59 CDT)
  • J. Rui Rodrigues (Fri Apr 30 2004 - 10:51:27 CDT)
• namd-l: DCD for windows
  • Gianluca Interlandi (Tue Mar 06 2007 - 17:32:09 CST)
• namd-l: diffusion coefficient from rmsd
  • bo liu (Thu Aug 28 2008 - 01:38:38 CDT)
  • Axel Kohlmeyer (Wed Aug 27 2008 - 22:39:52 CDT)
• namd-l: display all frames simultaneously
  • Samuel Coulbourn Flores 花山 (Fri Apr 17 2009 - 11:35:11 CDT)
• namd-l: electric field
  • Peter Freddolino (Sun Sep 03 2006 - 08:10:10 CDT)
• namd-l: Energy plot script
  • bo liu (Thu May 15 2008 - 13:00:23 CDT)
  • Subramanian Vaitheeswaran (Thu May 15 2008 - 07:28:20 CDT)
• namd-l: error in membrane producing
  • John Stone (Thu Apr 13 2006 - 01:21:39 CDT)
  • mashaojienuaa (Sun Mar 19 2006 - 20:19:40 CST)
• namd-l: Error in running minimization
  • Joshua Adelman (Fri May 21 2010 - 07:56:06 CDT)
• namd-l: FFTK - error
  • Mayne, Christopher G (Mon Jun 15 2015 - 10:17:01 CDT)
  • Mohan maruthi sena (Fri Jun 12 2015 - 23:21:09 CDT)
  • Mayne, Christopher G (Fri Jun 12 2015 - 11:52:09 CDT)
• namd-l: flexible fitting for helical structure
  • Giacomo Fiorin (Tue Nov 05 2019 - 20:09:25 CST)
• namd-l: Fwd: conf file for coarse grained simulation
  • John Stone (Thu Dec 17 2009 - 13:33:34 CST)
  • Francesco Pietra (Thu Dec 17 2009 - 12:27:15 CST)
  • Francesco Pietra (Thu Dec 17 2009 - 02:34:23 CST)
  • Peter Freddolino (Wed Dec 16 2009 - 18:49:13 CST)
  • Peter Freddolino (Tue Dec 15 2009 - 10:45:27 CST)
  • Francesco Pietra (Tue Dec 15 2009 - 10:01:30 CST)
  • Francesco Pietra (Tue Dec 15 2009 - 02:40:55 CST)
• namd-l: Fwd: parseFEP domain error
  • Francesco Pietra (Wed Mar 07 2018 - 08:39:49 CST)
• namd-l: Fwd: TIP4P and CHARMM27
  • Francesco Pietra (Thu Dec 03 2015 - 12:19:58 CST)
  • Peter Freddolino (Wed Dec 02 2015 - 12:51:43 CST)
  • Francesco Pietra (Wed Dec 02 2015 - 11:47:58 CST)
  • Francesco Pietra (Tue Dec 01 2015 - 03:22:31 CST)
  • Jim Phillips (Mon Nov 30 2015 - 16:21:44 CST)
  • Francesco Pietra (Fri Nov 27 2015 - 15:54:56 CST)
  • Francesco Pietra (Fri Nov 27 2015 - 11:35:25 CST)
  • Francesco Pietra (Fri Nov 27 2015 - 10:18:28 CST)
• namd-l: Generating PSF for 1JNO.pdb chain A
  • snoze pa (Fri Apr 14 2006 - 11:40:34 CDT)
• namd-l: Gromacs analysis tools for Namd output
  • Axel Kohlmeyer (Wed Feb 01 2012 - 11:48:47 CST)
• namd-l: Hardware for NAMD / VMD machine
  • Axel Kohlmeyer (Fri Jul 03 2009 - 11:56:08 CDT)
• namd-l: hBond colvars and patching
  • Francesco Pietra (Tue Mar 08 2011 - 00:34:36 CST)
  • Peter Freddolino (Mon Mar 07 2011 - 17:08:23 CST)
  • Peter Freddolino (Mon Mar 07 2011 - 09:19:20 CST)
  • Francesco Pietra (Mon Mar 07 2011 - 00:12:54 CST)
• namd-l: How to calculate the C alpha RMSD from NAMD trajectory
  • L. Michel Espinoza-Fonseca (Fri Aug 03 2007 - 02:59:02 CDT)
• namd-l: How to create psf for graphene
  • Axel Kohlmeyer (Sat Aug 04 2012 - 13:28:04 CDT)
  • Monika Madhavi (Sat Aug 04 2012 - 01:04:24 CDT)
• namd-l: How to evaluate the area per lipid and thickness of the lipid bilayer in a membrane-protein system?
  • Toni Giorgino (Thu Aug 25 2011 - 07:24:55 CDT)
  • Vlad Cojocaru (Thu Aug 25 2011 - 02:14:15 CDT)
• namd-l: how to generate transparent figures?
  • Jérôme Hénin (Mon Jul 25 2011 - 07:19:40 CDT)
  • Dudo (Mon Jul 25 2011 - 05:13:50 CDT)
  • Axel Kohlmeyer (Mon Jul 25 2011 - 03:48:10 CDT)
  • BIN ZHANG (Sun Jul 24 2011 - 11:31:04 CDT)
• namd-l: How to make a disulphide bond
  • Charles Danko (Tue May 16 2006 - 13:47:37 CDT)
• namd-l: How to play molecule trajectory with VMD?
  • Regina Politi (Sun Apr 27 2008 - 07:15:22 CDT)
• namd-l: How to solvate a protein using C36 and not C27
  • Tristan Croll (Sat Jan 25 2014 - 23:24:34 CST)
  • Tristan Croll (Sat Jan 25 2014 - 23:07:30 CST)
• namd-l: how to use measure hbonds to calculate occupancy of all hbonds in simulation?
  • Dong Luo (Wed May 16 2007 - 11:44:01 CDT)
  • lnubiofox (Wed May 16 2007 - 09:57:51 CDT)
  • Dong Luo (Tue May 15 2007 - 18:27:01 CDT)
• namd-l: how to write a command to close vmd in shell script?
  • Benjamin Bouvier (Mon Aug 10 2009 - 03:07:38 CDT)
• namd-l: Including two parameters for protein-ligand simulation
  • Payal Chatterjee (Wed Oct 28 2015 - 03:08:16 CDT)
  • Abhishek TYAGI (Wed Oct 28 2015 - 01:59:21 CDT)
• namd-l: is possible to remove the waterbox before running VMD
  • Wolbach, Jeffrey P \(WOLBACH\) (Thu Mar 09 2006 - 13:45:20 CST)
  • griadi_at_utalca.cl (Thu Mar 09 2006 - 12:56:38 CST)
  • Michael.Grabe_at_ucsf.edu (Thu Mar 09 2006 - 12:29:00 CST)
  • Sterling Paramore (Thu Mar 09 2006 - 11:50:08 CST)
• namd-l: Is there someway to render protein picture without background color?
  • John Stone (Thu Sep 26 2019 - 13:33:30 CDT)
  • Geist, Norman (Thu Sep 26 2019 - 03:14:48 CDT)
  • John Stone (Thu Sep 19 2019 - 10:13:52 CDT)
  • Norman Geist (Thu Sep 19 2019 - 04:13:05 CDT)
  • John Stone (Tue Sep 17 2019 - 16:11:48 CDT)
  • Chitrak Gupta (Sat Sep 14 2019 - 20:52:08 CDT)
• namd-l: LYC Parameter-Topology ?
  • Harindar Keer (Wed Nov 19 2003 - 13:01:55 CST)
• namd-l: MMPBSA Energy Calculations using VMD (Post-Processing)
  • Fotis Baltoumas (Thu Apr 10 2014 - 10:09:00 CDT)
• namd-l: MMTools
  • Chathurika Abeyrathne (Wed Aug 17 2011 - 21:07:21 CDT)
  • Axel Kohlmeyer (Wed Aug 17 2011 - 20:28:28 CDT)
  • Chathurika Abeyrathne (Wed Aug 17 2011 - 19:02:46 CDT)
  • Axel Kohlmeyer (Wed Aug 17 2011 - 10:15:50 CDT)
• namd-l: Modifying the equilibrium distance for a specific region of carbon nanotube in the parameter file
  • Abhishek TYAGI (Mon Dec 26 2016 - 08:59:58 CST)
• namd-l: Molecule drifts and high average RMSD per residue
  • Peter Freddolino (Tue Oct 09 2007 - 09:58:06 CDT)
  • Peter Freddolino (Tue Oct 09 2007 - 09:51:07 CDT)
  • Peter Freddolino (Tue Oct 09 2007 - 09:45:23 CDT)
• namd-l: molecule jumps from one site to the other?
  • Eric H. Lee (Mon Jul 13 2009 - 21:33:42 CDT)
• namd-l: NAMD energy plugin
  • Ramin Ekhteiari (Wed Jun 04 2014 - 13:55:23 CDT)
• namd-l: NAMD ibverbs not working on new cluster
  • John Stone (Wed Jan 20 2010 - 12:46:35 CST)
  • Carsten Olbrich (Wed Jan 20 2010 - 06:49:43 CST)
• namd-l: namd minimization looking for wrong angle
  • Francesco Pietra (Sat Nov 20 2021 - 08:57:32 CST)
  • Francesco Pietra (Fri Nov 19 2021 - 15:15:00 CST)
  • Francesco Pietra (Fri Nov 19 2021 - 10:55:59 CST)
  • Peter Freddolino (Fri Nov 19 2021 - 11:02:59 CST)
  • Peter Freddolino (Fri Nov 19 2021 - 07:56:58 CST)
  • Francesco Pietra (Fri Nov 19 2021 - 03:32:39 CST)
  • Peter Freddolino (Thu Nov 18 2021 - 08:03:40 CST)
  • Francesco Pietra (Thu Nov 18 2021 - 04:02:10 CST)
• namd-l: NAMD-GPU
  • Axel Kohlmeyer (Wed May 14 2014 - 07:51:37 CDT)
• namd-l: NAMDEnergy
  • Peter Freddolino (Tue Oct 30 2007 - 12:20:16 CDT)
  • lily jin (Tue Oct 30 2007 - 12:34:43 CDT)
• namd-l: NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled
  • Peter Freddolino (Tue May 06 2008 - 00:37:54 CDT)
• namd-l: Nanopore simulation
  • subhasish chatterjee (Wed Feb 21 2007 - 22:58:18 CST)
  • Axel Kohlmeyer (Wed Feb 21 2007 - 12:06:08 CST)
  • subhasish chatterjee (Wed Feb 21 2007 - 00:00:07 CST)
  • subhasish chatterjee (Tue Feb 20 2007 - 23:54:32 CST)
  • Mark Abraham (Tue Feb 20 2007 - 22:14:46 CST)
• namd-l: Nanotube Simulations
  • Jason Lee (Tue Aug 02 2005 - 14:23:32 CDT)
• namd-l: On-the-fly modification of tclforces script?
  • Tristan Croll (Sun Nov 15 2015 - 20:22:38 CST)
  • Tristan Croll (Sun Nov 15 2015 - 18:45:43 CST)
  • Tristan Croll (Sun Nov 15 2015 - 04:32:42 CST)
  • John Stone (Sat Nov 14 2015 - 09:51:58 CST)
  • Tristan Croll (Fri Nov 13 2015 - 22:55:11 CST)
  • Tristan Croll (Fri Nov 13 2015 - 22:20:15 CST)
  • Tristan Croll (Fri Nov 13 2015 - 21:24:25 CST)
  • John Stone (Fri Nov 13 2015 - 20:17:53 CST)
  • Tristan Croll (Fri Nov 13 2015 - 19:28:39 CST)
  • John Stone (Fri Nov 13 2015 - 19:05:34 CST)
  • Tristan Croll (Fri Nov 13 2015 - 18:14:28 CST)
  • Tristan Croll (Fri Nov 13 2015 - 16:48:21 CST)
• namd-l: Pair interaction calculation is not supported in CUDA version
  • Adupa Vasista (Sun Mar 15 2020 - 23:48:52 CDT)
  • Josh Vermaas (Sun Mar 15 2020 - 14:58:45 CDT)
• namd-l: Parameter
  • snoze pa (Fri Jul 20 2007 - 14:49:18 CDT)
  • Leonardo Trabuco (Fri Jul 20 2007 - 13:21:40 CDT)
• namd-l: ParseFEP error with FEP in segments at different lambda schedule
  • Brian Radak (Tue Apr 10 2018 - 07:56:40 CDT)
• namd-l: pre residues and ligands interaction
  • Axel Kohlmeyer (Thu Nov 21 2013 - 06:55:04 CST)
• namd-l: Problem on merging multi-psf files into one
  • Axel Kohlmeyer (Sun Oct 18 2015 - 09:39:43 CDT)
• namd-l: Problem with running namdenergy plugin from text interface
  • Josh Vermaas (Mon Sep 22 2014 - 15:09:10 CDT)
• namd-l: Problems with GLUP and ASPP with CHARMM36
  • Francesco Pietra (Fri Dec 11 2015 - 09:21:34 CST)
  • Francesco Pietra (Fri Dec 11 2015 - 09:35:48 CST)
  • Josh Vermaas (Fri Dec 11 2015 - 09:25:11 CST)
  • Josh Vermaas (Fri Dec 11 2015 - 08:45:00 CST)
• namd-l: problems with in text mode towards pdf and pdb files
  • Jim Phillips (Fri Nov 21 2014 - 12:50:22 CST)
  • Francesco Pietra (Fri Nov 21 2014 - 10:42:05 CST)
  • Jim Phillips (Fri Nov 21 2014 - 10:54:20 CST)
  • Francesco Pietra (Fri Nov 21 2014 - 10:06:28 CST)
  • Jim Phillips (Fri Nov 21 2014 - 09:56:11 CST)
  • Francesco Pietra (Fri Nov 21 2014 - 09:39:56 CST)
  • Jim Phillips (Fri Nov 21 2014 - 09:29:35 CST)
• namd-l: Proper use of psfgen "mutate"?
  • Brian Radak (Tue Apr 10 2018 - 09:41:54 CDT)
  • Jérôme Hénin (Tue Apr 10 2018 - 09:23:20 CDT)
• namd-l: psfgen - pdbalias when using readpsf
  • Peter Freddolino (Thu Dec 15 2016 - 15:37:40 CST)
  • Vermaas, Joshua (Thu Dec 15 2016 - 15:26:11 CST)
  • Peter Freddolino (Thu Dec 15 2016 - 15:03:23 CST)
  • Brian Radak (Thu Dec 15 2016 - 14:48:01 CST)
  • Peter Freddolino (Thu Dec 15 2016 - 14:40:40 CST)
• namd-l: psfgen giving wrong structure in the autopdb file
  • Peter Freddolino (Fri Apr 07 2017 - 07:58:04 CDT)
  • Peter Freddolino (Thu Apr 06 2017 - 19:50:01 CDT)
  • João Ribeiro (Thu Apr 06 2017 - 19:06:36 CDT)
• namd-l: psfgen tyrosine anion-Fe bond
  • Francesco Pietra (Sun Apr 01 2012 - 12:14:27 CDT)
  • Francesco Pietra (Sun Apr 01 2012 - 12:03:17 CDT)
• namd-l: ptraj
  • Nicolas Sapay (Tue Sep 27 2005 - 10:03:18 CDT)
• namd-l: Query regarding 'Protein:ligand Standard Binding Free Energies' tutorial
  • Gumbart, JC (Tue Dec 22 2020 - 20:43:36 CST)
  • Faisal, H M Nasrullah (Tue Dec 22 2020 - 20:52:34 CST)
• namd-l: question from a tutorial
  • JC Gumbart (Thu Jan 20 2011 - 14:29:23 CST)
• namd-l: Question regarding FEP parameters
  • Chris Harrison (Wed Aug 29 2012 - 15:32:52 CDT)
  • snoze pa (Wed Aug 29 2012 - 13:47:31 CDT)
• namd-l: question related to rmsd
  • JC Gumbart (Mon May 05 2008 - 16:19:47 CDT)
• namd-l: recentering protein in the waterbox
  • Gianluca Interlandi (Fri Jun 18 2004 - 18:16:35 CDT)
• namd-l: Recentering the box on target molecule and wraping
  • Jerome Henin (Mon Sep 11 2006 - 12:05:04 CDT)
• namd-l: Regarding problem in psfgen of heparin
  • Tristan Croll (Tue Oct 06 2015 - 18:44:21 CDT)
• namd-l: RMSD and RMSF of ligand Only
  • Ashar Malik (Thu Oct 28 2021 - 09:26:11 CDT)
  • Mi Yang (Thu Oct 28 2021 - 08:35:40 CDT)
• namd-l: SASA of PBD files
  • sajad falsafi (Sat Sep 03 2011 - 14:38:17 CDT)
• namd-l: script
  • Luis Gracia (Tue Sep 06 2005 - 13:21:40 CDT)
  • LEWYN LI (Tue Sep 06 2005 - 11:12:35 CDT)
• namd-l: Selecting atom of given residue in namdenergy plugin
  • Francesco Pietra (Wed Apr 19 2023 - 12:41:18 CDT)
  • Francesco Pietra (Wed Apr 19 2023 - 12:17:37 CDT)
  • Peter Freddolino (Wed Apr 19 2023 - 09:50:00 CDT)
• namd-l: selection of cholesterol molecules
  • Chris Harrison (Wed Nov 02 2011 - 00:06:35 CDT)
• namd-l: Simulation configuration file not accesible
  • Ajasja LjubetiÄ� (Fri Jun 25 2010 - 16:19:34 CDT)
• namd-l: solvate a molecule
  • Rudra Banerjee (Tue Sep 23 2008 - 22:32:53 CDT)
  • Chang, Christopher (Tue Sep 23 2008 - 11:57:58 CDT)
• namd-l: Solvation in VMD using Non Standard Solvent System
  • Axel Kohlmeyer (Wed Aug 10 2011 - 07:47:35 CDT)
• namd-l: Strange Bond Behavior Question
  • Ajasja LjubetiÄ� (Sat Jun 23 2018 - 04:54:04 CDT)
  • McGuire, Kelly (Fri Jun 22 2018 - 21:27:04 CDT)
  • Mike McCallum (Fri Jun 22 2018 - 20:37:57 CDT)
  • McGuire, Kelly (Fri Jun 22 2018 - 16:52:49 CDT)
  • McGuire, Kelly (Fri Jun 22 2018 - 16:17:28 CDT)
  • Brian Radak (Fri Jun 22 2018 - 16:12:30 CDT)
  • João Ribeiro (Fri Jun 22 2018 - 16:08:07 CDT)
• namd-l: STRIDE Algorithm
  • L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 10:43:56 CDT)
• namd-l: tcl question
  • Blake Charlebois (Thu Jun 16 2005 - 22:32:39 CDT)
• namd-l: the patch between segments for multiple chains molecule.
  • Leonardo G. Trabuco (Wed Jun 14 2006 - 12:57:42 CDT)
  • Moumita Maiti (Wed Jun 14 2006 - 06:21:09 CDT)
  • Leonardo G. Trabuco (Fri Jun 02 2006 - 13:09:23 CDT)
• namd-l: the patching problem in psfgen
  • Leonardo G. Trabuco (Wed Jun 14 2006 - 13:09:36 CDT)
• namd-l: too large an area/lipid in POPE bilayers using membrane plugin
  • John Stone (Mon Feb 05 2007 - 14:52:48 CST)
  • Richard Law (Mon Feb 05 2007 - 12:49:07 CST)
• namd-l: Truncated Octahedron for VMD and NAMD simulation
  • Yinglong Miao (Fri May 16 2008 - 09:42:20 CDT)
  • Vlad Cojocaru (Fri May 16 2008 - 03:29:41 CDT)
  • George Madalin Giambasu (Thu May 15 2008 - 15:23:51 CDT)
• namd-l: Truncated Octahedron for VMD and NAMDsimulation
  • Bishop, Thomas C (Fri May 16 2008 - 13:39:16 CDT)
• namd-l: Turning off forces in VMD
  • Marc Baaden (Mon Jan 09 2006 - 01:01:03 CST)
• namd-l: TXT program editor
  • Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
• namd-l: Umbrella Sampling in PLUMED + NAMD
  • Vermaas, Joshua (Mon Apr 22 2019 - 11:50:56 CDT)
• namd-l: vecsub:two vectors don't have the same size
  • Joao Ribeiro (Thu Jun 06 2019 - 09:21:58 CDT)
• namd-l: velocity IO with psfgen?
  • John Stone (Thu Feb 26 2015 - 12:47:52 CST)
  • Brian Radak (Thu Feb 26 2015 - 11:42:22 CST)
  • John Stone (Thu Feb 26 2015 - 11:03:15 CST)
  • Ajasja LjubetiÄ� (Thu Feb 26 2015 - 10:37:55 CST)
  • Brian Radak (Thu Feb 26 2015 - 10:56:57 CST)
• namd-l: VMD Command
  • Viswanadham Sridhara (Tue Mar 21 2006 - 12:31:23 CST)
• namd-l: VMD-NAMD and PDB element column
  • Francesco Pietra (Mon Dec 14 2015 - 14:52:18 CST)
  • Francesco Pietra (Mon Dec 14 2015 - 14:42:21 CST)
  • Jim Phillips (Mon Dec 14 2015 - 09:04:21 CST)
  • Francesco Pietra (Sun Dec 13 2015 - 15:59:37 CST)
  • Jim Phillips (Sun Dec 13 2015 - 14:32:38 CST)
  • Francesco Pietra (Sun Dec 13 2015 - 13:39:11 CST)
  • Jim Phillips (Sun Dec 13 2015 - 12:17:57 CST)
• namd-l: volume from VMD and NAMD different?
  • Jim Phillips (Fri Aug 05 2005 - 17:46:25 CDT)
  • Brian Bennion (Fri Aug 05 2005 - 17:38:27 CDT)
  • Jim Phillips (Fri Aug 05 2005 - 17:34:45 CDT)
• namd-l: what does "patch" mean?
  • dimka (Sun Mar 19 2006 - 23:33:21 CST)
• namd-l: wrapping option in namd
  • Research Jubilant (Wed Mar 19 2014 - 22:38:16 CDT)
  • Ivan Gregoretti (Wed Mar 19 2014 - 21:58:30 CDT)
• namd-l: wrapping problem
  • Ramya Gamini (Wed Dec 01 2010 - 13:45:25 CST)
  • Ramya Gamini (Wed Dec 01 2010 - 11:37:26 CST)
• namd-l: Writing pdb file.. easier way?
  • Justin Gullingsrud (Tue Nov 23 2004 - 14:45:15 CST)
  • griadi_at_utalca.cl (Tue Nov 23 2004 - 12:44:03 CST)
  • Jérôme Hénin (Thu Nov 18 2004 - 17:28:36 CST)
• namd-l; question about psfgen (param for CT1?)
  • Margaret Shun Cheung (Thu Apr 06 2006 - 15:53:20 CDT)
• namd/vmd support to GTX-6## series
  • Francesco Pietra (Thu Jun 21 2012 - 12:36:27 CDT)
  • John Stone (Wed Jun 06 2012 - 09:13:01 CDT)
  • Francesco Pietra (Wed Jun 06 2012 - 03:43:38 CDT)
• namd2 unable to find bond.
  • Dave Arias (NelsonDa) (Wed Mar 07 2012 - 14:58:39 CST)
• namd2.7b1, tip4p, and dummies
  • Edward Lyman (Wed Sep 30 2009 - 01:36:06 CDT)
• namd2.exe has stopped working - NAMDEnergy
  • Pawel Kedzierski (Tue Feb 03 2015 - 05:02:37 CST)
  • Viswanath Pasumarthi (Tue Feb 03 2015 - 04:07:45 CST)
  • Pawel Kedzierski (Tue Feb 03 2015 - 03:23:32 CST)
  • Viswanath Pasumarthi (Tue Feb 03 2015 - 01:28:13 CST)
• namdenergy
  • Subrata Paul (Wed Mar 25 2015 - 13:21:07 CDT)
  • John Stone (Wed Jun 10 2009 - 09:47:29 CDT)
  • Andres Morales N (Wed Jun 10 2009 - 08:59:51 CDT)
  • Peter Freddolino (Sun Jun 07 2009 - 16:41:54 CDT)
  • Eric H. Lee (Sun Jun 07 2009 - 15:37:30 CDT)
  • Andres Morales N (Sun Jun 07 2009 - 15:23:35 CDT)
  • Andres Morales N (Sun Jun 07 2009 - 15:24:33 CDT)
  • Peter Freddolino (Mon May 11 2009 - 12:37:07 CDT)
  • BIN ZHANG (Mon May 11 2009 - 12:29:37 CDT)
  • Peter Freddolino (Thu May 07 2009 - 22:45:00 CDT)
  • BIN ZHANG (Thu May 07 2009 - 17:26:23 CDT)
  • lily jin (Tue Oct 30 2007 - 12:00:57 CDT)
  • Peter Freddolino (Tue Jul 24 2007 - 13:26:29 CDT)
  • virginia miguel (Tue Jul 24 2007 - 13:18:37 CDT)
• NAMDENERGY analysis
  • Axel Kohlmeyer (Thu Oct 04 2007 - 15:34:32 CDT)
  • Peter Freddolino (Thu Oct 04 2007 - 14:18:05 CDT)
  • Peter Freddolino (Thu Oct 04 2007 - 14:28:18 CDT)
  • Narender Singh Maan (Thu Oct 04 2007 - 13:34:16 CDT)
• namdenergy and bigdcd
  • Peter Freddolino (Sat Jun 04 2016 - 20:58:06 CDT)
  • Grant Schauer (Fri Jun 03 2016 - 15:55:26 CDT)
• namdenergy and simulation with amber ff
  • Peter Freddolino (Mon Aug 04 2008 - 11:50:31 CDT)
  • Peter Freddolino (Fri Aug 01 2008 - 08:24:36 CDT)
  • Alan (Fri Aug 01 2008 - 02:05:23 CDT)
• Namdenergy BUG: Namd started without initial box info, pairlist invalid
  • Peter Freddolino (Tue May 24 2016 - 07:40:30 CDT)
  • Norman Geist (Tue May 24 2016 - 03:02:26 CDT)
• NAMDenergy calculation
  • shome sankar bhunia (Fri Mar 25 2011 - 08:28:50 CDT)
• NAMDENERGY crashing repeatedly
  • Chandra Ramananjara (Tue Aug 05 2008 - 18:49:40 CDT)
  • Peter Freddolino (Tue Aug 05 2008 - 16:26:52 CDT)
  • Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
• namdEnergy doesn't run on clusters
  • John Stone (Wed Jul 18 2012 - 12:37:35 CDT)
  • Wang Yi (Wed Jul 18 2012 - 09:55:37 CDT)
  • John Stone (Wed Jul 18 2012 - 10:47:17 CDT)
  • Wang Yi (Wed Jul 18 2012 - 10:31:17 CDT)
  • John Stone (Wed Jul 18 2012 - 10:36:23 CDT)
  • John Stone (Wed Jul 18 2012 - 10:23:49 CDT)
  • John Stone (Wed Jul 18 2012 - 10:04:01 CDT)
  • Wang Yi (Wed Jul 18 2012 - 10:17:52 CDT)
  • John Stone (Wed Jul 18 2012 - 09:46:30 CDT)
  • Wang Yi (Tue Jul 17 2012 - 22:28:06 CDT)
• NAMDEnergy fails to locate supporting files
  • Viswanath Pasumarthi (Fri Feb 13 2015 - 03:17:41 CST)
  • Ashar Malik (Thu Feb 12 2015 - 03:53:34 CST)
  • Ashar Malik (Thu Feb 12 2015 - 03:49:52 CST)
  • Ashar Malik (Thu Feb 12 2015 - 03:02:21 CST)
  • Viswanath Pasumarthi (Thu Feb 12 2015 - 03:15:21 CST)
  • Ashar Malik (Thu Feb 12 2015 - 03:00:29 CST)
  • Viswanath Pasumarthi (Thu Feb 12 2015 - 02:58:11 CST)
  • Viswanath Pasumarthi (Thu Feb 12 2015 - 00:12:36 CST)
  • Viswanath Pasumarthi (Wed Feb 11 2015 - 03:14:15 CST)
  • Viswanath Pasumarthi (Wed Feb 11 2015 - 00:55:18 CST)
  • Viswanath Pasumarthi (Tue Feb 10 2015 - 22:35:48 CST)
  • John Stone (Mon Feb 09 2015 - 11:12:35 CST)
  • Viswanath Pasumarthi (Mon Feb 09 2015 - 07:59:09 CST)
  • Fotis Baltoumas (Mon Feb 09 2015 - 06:53:41 CST)
  • Viswanath Pasumarthi (Mon Feb 09 2015 - 06:32:15 CST)
• namdenergy fulldirect
  • Josh Vermaas (Fri Oct 04 2013 - 16:04:40 CDT)
  • Prof. Eddie (Fri Oct 04 2013 - 14:02:30 CDT)
• namdenergy missing for -dispdev none (vmd 1.8.6)
  • Axel Kohlmeyer (Fri May 15 2009 - 13:27:22 CDT)
  • Peter Freddolino (Fri May 15 2009 - 12:43:50 CDT)
  • Thomas C. Bishop (Fri May 15 2009 - 12:37:13 CDT)
• namdenergy non-bonded question
  • Prof. Eddie (Fri Jun 14 2013 - 11:45:14 CDT)
• namdenergy pluding error
  • Subrata Paul (Mon Mar 30 2015 - 13:39:02 CDT)
  • Mayne, Christopher G (Mon Mar 30 2015 - 13:30:36 CDT)
  • Mayne, Christopher G (Mon Mar 30 2015 - 09:26:26 CDT)
  • Subrata Paul (Mon Mar 30 2015 - 00:26:54 CDT)
• NAMDenergy plugin
  • Diego Gomes (Tue Jan 30 2024 - 10:12:10 CST)
  • Diego Gomes (Mon Jan 29 2024 - 10:17:37 CST)
  • Alexei Rossokhin (Fri Jan 26 2024 - 07:38:58 CST)
  • Andres Morales N (Tue Jul 28 2009 - 00:34:43 CDT)
  • Peter Freddolino (Mon Jul 10 2006 - 00:08:12 CDT)
  • Peter Freddolino (Mon Jul 10 2006 - 00:02:33 CDT)
  • Chandra Ramananjara (Sun Jul 09 2006 - 23:47:10 CDT)
• namdenergy plugin energy values
  • Ravithree Senanayake (Tue May 14 2024 - 12:48:23 CDT)
• namdenergy plugin for Amber simulations
  • Nupur Bansal (Mon Oct 28 2013 - 11:06:07 CDT)
  • Nupur Bansal (Thu Oct 10 2013 - 12:25:00 CDT)
• NAMDEnergy Plugin in VMD
  • Ashar Malik (Sat Jul 16 2022 - 08:22:11 CDT)
  • Kartik Tulsian (Sat Jul 16 2022 - 05:11:00 CDT)
• namdenergy plugin, selection field
  • Bahaa Mostafa (Wed Jan 14 2015 - 23:56:13 CST)
• NAMDenergy plugin_VMD_van der Waal interactions
  • Bruno Luís Pinto de Oliveira (Wed Feb 08 2012 - 12:40:57 CST)
  • Bruno Luís Pinto de Oliveira (Wed Feb 08 2012 - 10:05:41 CST)
  • Bruno Luís Pinto de Oliveira (Tue Feb 07 2012 - 09:20:23 CST)
• namdenergy problem
  • Peter Freddolino (Wed Dec 01 2010 - 20:35:52 CST)
  • Francesco Oteri (Wed Dec 01 2010 - 06:23:23 CST)
  • Lixia Jin Day (Tue Jan 08 2008 - 14:30:29 CST)
  • Peter Freddolino (Tue Jan 08 2008 - 14:52:46 CST)
  • Peter Freddolino (Tue Oct 02 2007 - 18:55:14 CDT)
  • Peter Freddolino (Tue Oct 02 2007 - 18:14:14 CDT)
  • Narender Singh Maan (Tue Oct 02 2007 - 14:53:47 CDT)
• namdenergy pugin for interaction energy
  • John Stone (Thu Oct 31 2013 - 10:03:26 CDT)
  • Jana, Suvamay (Mon Oct 28 2013 - 13:02:40 CDT)
• namdenergy: different results for single vs multiple frames
  • Joshua Adelman (Tue Mar 12 2013 - 14:42:25 CDT)
  • John Stone (Tue Mar 12 2013 - 14:29:02 CDT)
  • Joshua Adelman (Tue Mar 12 2013 - 11:53:01 CDT)
• NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled
  • Ghalib Bello (Mon May 05 2008 - 23:02:45 CDT)
• namdenergy: how set "runextcommand"?
  • Peter Freddolino (Sat Mar 28 2009 - 19:36:45 CDT)
  • Sebastian Stolzenberg (Sat Mar 28 2009 - 18:59:33 CDT)
• NAMDenergy: how to override a FATAL ERROR
  • Peter Freddolino (Tue Apr 01 2008 - 10:55:05 CDT)
  • Peter Freddolino (Sun Mar 30 2008 - 16:02:30 CDT)
  • Neelanjana Sengupta (Sun Mar 30 2008 - 15:51:45 CDT)
  • Peter Freddolino (Sun Mar 30 2008 - 15:02:58 CDT)
  • Neelanjana Sengupta (Sun Mar 30 2008 - 14:50:29 CDT)
• NAMDenergy: problems on changing VMD version/platform
  • Neelanjana Sengupta (Mon Jul 06 2009 - 05:17:30 CDT)
  • Axel Kohlmeyer (Sun Jul 05 2009 - 13:58:50 CDT)
  • Axel Kohlmeyer (Sat Jul 04 2009 - 11:54:50 CDT)
  • Neelanjana Sengupta (Sat Jul 04 2009 - 11:17:44 CDT)
• namdenergy: writepdb failed
  • Peter Freddolino (Sun Jun 20 2010 - 19:09:47 CDT)
  • Axel Kohlmeyer (Sun Jun 20 2010 - 08:25:03 CDT)
  • Neelanjana Sengupta (Sun Jun 20 2010 - 06:27:02 CDT)
• NAMDGUI
  • Li, Haiqing (Tue Aug 06 2013 - 13:29:54 CDT)
• Namdinator - a web service for automatic MDFF simulations
  • Rune Thomas Kidmose (Mon Feb 18 2019 - 13:22:17 CST)
• namdplot 1.0
  • John Stone (Wed Jun 10 2009 - 23:03:34 CDT)
  • Thomas C. Bishop (Wed Jun 10 2009 - 22:14:11 CDT)
• Name / permissions of Optix Diskcache
  • John Stone (Thu Dec 12 2019 - 09:04:06 CST)
  • Stefan Boresch (Thu Dec 12 2019 - 06:37:29 CST)
  • John Stone (Wed Dec 11 2019 - 08:22:01 CST)
  • Stefan Boresch (Wed Dec 11 2019 - 01:59:17 CST)
• Name selections
  • Peter C. Lai (Wed Sep 19 2012 - 18:50:55 CDT)
  • Prof. Eddie (Wed Sep 19 2012 - 13:23:33 CDT)
• NameError: name 'AtomSel' is not defined
  • Albert (Tue Jan 29 2013 - 01:12:23 CST)
  • Caio S. Souza (Mon Jan 28 2013 - 13:40:45 CST)
  • Josh Vermaas (Mon Jan 28 2013 - 14:12:43 CST)
  • Albert (Mon Jan 28 2013 - 11:38:16 CST)
• Naming in XmGrace
  • Teletchéa Stéphane (Thu Nov 20 2003 - 11:16:41 CST)
  • John Stone (Thu Nov 20 2003 - 09:51:04 CST)
  • Teletchéa Stéphane (Thu Nov 20 2003 - 06:53:21 CST)
  • Teletchéa Stéphane (Thu Nov 20 2003 - 02:54:12 CST)
  • Justin Gullingsrud (Wed Nov 19 2003 - 11:21:08 CST)
  • Teletchéa Stéphane (Wed Nov 19 2003 - 11:01:41 CST)
  • Justin Gullingsrud (Tue Nov 18 2003 - 11:26:41 CST)
  • Teletchéa Stéphane (Tue Nov 18 2003 - 10:39:08 CST)
  • John Stone (Tue Nov 18 2003 - 10:05:04 CST)
  • himanshu chandola (Tue Nov 18 2003 - 20:09:09 CST)
  • Teletchéa Stéphane (Tue Nov 18 2003 - 07:03:10 CST)
• Nanopore Sequencing Tutorial Problem
  • Andrew Doig (Thu Feb 02 2023 - 19:07:57 CST)
• Nanopore simulation
  • subhasish chatterjee (Tue Feb 20 2007 - 21:58:54 CST)
• Nanostructure Plugin from TCL Script
  • Michail Palaiokostas Avramidis (Tue Feb 25 2014 - 12:35:11 CST)
  • Maxim Belkin (Tue Feb 25 2014 - 12:15:49 CST)
  • Michail Palaiokostas Avramidis (Tue Feb 25 2014 - 11:41:32 CST)
• Nanotech Ventures 2005 - Tokyo & California
  • NSTI Nanotech Ventures (Thu Dec 16 2004 - 00:50:00 CST)
• Nanotube builder bug
  • Pawel Kedzierski (Thu May 13 2021 - 08:06:06 CDT)
• Nanotube in lipid bilayer
  • Mortimer Hemmit (Fri Aug 21 2020 - 09:03:30 CDT)
  • RAHUL SURESH (Tue Aug 18 2020 - 06:05:04 CDT)
  • Mortimer Hemmit (Sat Aug 15 2020 - 17:17:49 CDT)
  • Mortimer Hemmit (Thu Aug 13 2020 - 20:21:55 CDT)
  • RAHUL SURESH (Thu Aug 13 2020 - 06:08:42 CDT)
• Nanotube Simulations
  • Jordi Cohen (Tue Aug 02 2005 - 14:41:03 CDT)
  • Gaurav Sharma (Tue Aug 02 2005 - 13:56:15 CDT)
  • John Stone (Tue Aug 02 2005 - 12:34:58 CDT)
  • Gaurav Sharma (Tue Aug 02 2005 - 08:51:14 CDT)
• Native contacts tcl script crashed
  • John Stone (Fri Feb 19 2021 - 02:02:56 CST)
  • Sunita Patel (Thu Feb 18 2021 - 23:07:53 CST)
  • Axel Kohlmeyer (Thu Feb 18 2021 - 01:13:34 CST)
  • Ashar Malik (Thu Feb 18 2021 - 01:02:58 CST)
  • Sunita Patel (Thu Feb 18 2021 - 00:36:29 CST)
  • Axel Kohlmeyer (Tue Feb 16 2021 - 05:12:14 CST)
  • Sunita Patel (Tue Feb 16 2021 - 05:01:30 CST)
• Native contacts trajectory tool available
  • Toni Giorgino (Tue Jul 13 2010 - 14:09:49 CDT)
• Native OSX VMD version for 10.2
  • John Stone (Wed Oct 02 2002 - 13:18:51 CDT)
  • John Stone (Mon Sep 23 2002 - 15:22:38 CDT)
• Natural WeightL0SS Solution
  • ltrabuco_at_ks.uiuc.edu (Wed Jul 15 2009 - 17:35:35 CDT)
• near clip
  • Schreiner Eduard (Wed Mar 25 2009 - 23:53:49 CDT)
  • John Stone (Fri Mar 20 2009 - 14:53:20 CDT)
  • Leandro Martínez (Fri Mar 20 2009 - 14:28:53 CDT)
  • John Stone (Fri Mar 20 2009 - 11:52:39 CDT)
  • Leandro Martínez (Fri Mar 20 2009 - 07:48:51 CDT)
• Nearest neighbor selection
  • Richard Swenson (Tue Jun 12 2007 - 15:23:31 CDT)
  • John Stone (Tue Jun 12 2007 - 10:36:02 CDT)
  • Richard Swenson (Mon Jun 11 2007 - 10:23:57 CDT)
• Need a few testers for Linux version of VMD 1.8.3...
  • Axel Kohlmeyer (Fri Jun 11 2004 - 15:17:13 CDT)
  • Luca Mollica (Fri Jun 11 2004 - 12:08:15 CDT)
  • John Stone (Fri Jun 11 2004 - 11:10:15 CDT)
  • Jerry Ebalunode (Fri Jun 11 2004 - 09:56:51 CDT)
  • John Stone (Fri Jun 11 2004 - 10:33:55 CDT)
• Need compile options for text-only version of VMD
  • Jim Parker (Thu Aug 21 2014 - 16:26:37 CDT)
  • John Stone (Thu Aug 21 2014 - 16:33:47 CDT)
  • John Stone (Thu Aug 21 2014 - 15:25:42 CDT)
  • Jim Parker (Thu Aug 21 2014 - 15:22:06 CDT)
  • John Stone (Wed Aug 20 2014 - 16:27:30 CDT)
  • Jim Parker (Wed Aug 20 2014 - 16:17:16 CDT)
  • Jim Parker (Wed Aug 20 2014 - 16:09:15 CDT)
• need convert when using VMD to make a movie under Mac
  • John Stone (Tue Jul 21 2009 - 01:13:44 CDT)
  • Eric H. Lee (Mon Jul 20 2009 - 18:34:53 CDT)
  • Yongmei Pan (Mon Jul 20 2009 - 17:49:29 CDT)
• Need FFTK Help from Someone w/ Gaussian
  • jrhau lung (Mon May 21 2018 - 19:22:37 CDT)
  • Alex Saad-Falcon (Mon May 21 2018 - 13:05:32 CDT)
• Need GAMESS logfiles for testing VMD's new QM interface
  • saam (Thu Jul 09 2009 - 11:58:08 CDT)
• Need Guidance with pbctools
  • Angelo Rossi (Sun Jul 12 2009 - 08:02:21 CDT)
  • Olaf Lenz (Sun Jul 12 2009 - 03:00:58 CDT)
  • Angelo Rossi (Sat Jul 11 2009 - 13:47:11 CDT)
• need help
  • Bhaskar Jyoti Borah (Tue Jul 10 2007 - 01:19:58 CDT)
  • Axel Kohlmeyer (Mon Jul 09 2007 - 09:25:03 CDT)
  • Bhaskar Jyoti Borah (Mon Jul 09 2007 - 05:25:50 CDT)
• need help - hardware stereo on a Windows PC
  • John Stone (Fri Apr 13 2001 - 00:21:10 CDT)
  • Kristian Mueller (Thu Apr 12 2001 - 11:41:36 CDT)
• Need help about hbond and saltbridge
  • Leonardo Trabuco (Sat May 19 2007 - 17:14:18 CDT)
  • s104fendy (Fri May 18 2007 - 03:07:05 CDT)
• need help for tcl script
  • Josh Vermaas (Sun Dec 14 2014 - 14:35:14 CST)
  • Ashar Malik (Sun Dec 14 2014 - 14:38:33 CST)
  • Kshatresh Dutta Dubey (Sun Dec 14 2014 - 14:52:54 CST)
  • Kshatresh Dutta Dubey (Sun Dec 14 2014 - 10:02:14 CST)
• Need help in atoms selection
  • Khuong Truong Gia (Mon Apr 18 2016 - 06:34:57 CDT)
  • Jérôme Hénin (Mon Apr 18 2016 - 04:17:27 CDT)
  • Khuong Truong Gia (Sun Apr 17 2016 - 04:32:53 CDT)
• Need help in NAMD Energy plugin
  • Peter Freddolino (Tue Apr 11 2017 - 22:16:52 CDT)
  • jrhau lung (Tue Apr 11 2017 - 20:03:14 CDT)
• Need help in selection
  • M K (Mon Nov 02 2015 - 04:11:35 CST)
  • Kshatresh Dutta Dubey (Mon Nov 02 2015 - 03:37:42 CST)
  • Karteek Kumar (Mon Nov 02 2015 - 03:22:00 CST)
  • Kshatresh Dutta Dubey (Mon Nov 02 2015 - 03:12:13 CST)
• Need help sleeping? Read this!
  • Kendra Baker (Thu Aug 16 2007 - 20:39:47 CDT)
• need HELP with psf file
  • John Stone (Mon Apr 10 2006 - 23:55:53 CDT)
  • Praveen Madala (Mon Apr 10 2006 - 22:23:30 CDT)
• Need helps about connecting phantom with VMD through VRPN
  • John Stone (Mon Mar 19 2007 - 10:08:54 CDT)
  • preeda (Mon Mar 19 2007 - 09:30:43 CDT)
• need tcl help, please
  • Irene Newhouse (Fri Nov 21 2008 - 14:36:07 CST)
  • Peter Freddolino (Fri Nov 21 2008 - 13:22:04 CST)
  • Irene Newhouse (Fri Nov 21 2008 - 12:57:03 CST)
• Need testers for VMD/Tachyon volumetric coloring feature :-)
  • John Stone (Wed May 27 2009 - 14:37:59 CDT)
• Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc.
  • Maxim Belkin (Thu Nov 27 2014 - 12:27:54 CST)
  • Norman Geist (Thu Nov 27 2014 - 03:19:00 CST)
  • John Stone (Wed Nov 26 2014 - 13:42:21 CST)
  • Norman Geist (Wed Nov 26 2014 - 02:32:21 CST)
  • John Stone (Thu Nov 13 2014 - 00:21:33 CST)
  • John Stone (Fri Oct 31 2014 - 11:31:36 CDT)
  • John Stone (Thu Oct 30 2014 - 11:33:12 CDT)
• need urgent help
  • Justin Gullingsrud (Sat Aug 30 2003 - 19:30:56 CDT)
  • Ioana Cozmuta (Fri Aug 29 2003 - 23:24:44 CDT)
  • Justin Gullingsrud (Fri Aug 29 2003 - 23:04:00 CDT)
  • Ioana Cozmuta (Thu Aug 28 2003 - 13:04:30 CDT)
• need your hep about IR Spectrum Plugin
  • Axel Kohlmeyer (Sun Sep 29 2013 - 09:31:10 CDT)
  • Hamid (Sun Sep 29 2013 - 07:26:56 CDT)
• Needing to visualize lots of spheres during solution steps
  • John Stone (Thu Feb 03 2022 - 23:32:45 CST)
  • Ali Sheikholeslam (Tue Jan 25 2022 - 13:34:14 CST)
• NetCDF (Amber MMTK) plugin
  • Weatherby,Gerard (Tue Aug 20 2019 - 12:41:34 CDT)
• Netcdf files
  • John Stone (Tue Jan 26 2021 - 00:26:00 CST)
  • mohamed marzouk (Mon Jan 25 2021 - 04:57:34 CST)
• netcdf for plugins
  • John Stone (Mon Mar 05 2018 - 09:50:33 CST)
  • Axel Kohlmeyer (Sun Mar 04 2018 - 07:49:42 CST)
  • Mahmood Naderan (Sun Mar 04 2018 - 07:45:51 CST)
  • Axel Kohlmeyer (Sun Mar 04 2018 - 07:34:44 CST)
  • Mahmood Naderan (Sun Mar 04 2018 - 07:11:08 CST)
• NetCDF plug-in for VMD
  • Wanlei Wei (Fri Dec 11 2015 - 20:20:15 CST)
  • John Stone (Fri Dec 11 2015 - 09:07:15 CST)
  • Wanlei Wei (Fri Dec 11 2015 - 07:49:43 CST)
• NetCDF plugin
  • Axel Kohlmeyer (Tue Sep 20 2011 - 18:59:11 CDT)
  • Alexandr Kornev (Tue Sep 20 2011 - 17:55:59 CDT)
• netcdf trajectory file
  • zoran (Fri Oct 30 2015 - 09:35:26 CDT)
  • Atila Petrosian (Fri Oct 30 2015 - 08:42:20 CDT)
  • Axel Kohlmeyer (Fri Oct 30 2015 - 08:28:50 CDT)
  • Diego Vazquez (Fri Oct 30 2015 - 08:19:32 CDT)
  • zoran (Fri Oct 30 2015 - 08:17:45 CDT)
  • Atila Petrosian (Fri Oct 30 2015 - 07:46:10 CDT)
  • Diego Vazquez (Fri Oct 30 2015 - 07:21:19 CDT)
  • Atila Petrosian (Fri Oct 30 2015 - 06:17:27 CDT)
  • Diego Vazquez (Fri Oct 30 2015 - 04:02:57 CDT)
  • Atila Petrosian (Fri Oct 30 2015 - 02:22:12 CDT)
• NetCDF type is missing
  • Axel Kohlmeyer (Mon Jun 15 2015 - 07:58:46 CDT)
  • Alessandro Mariani (Mon Jun 15 2015 - 07:31:59 CDT)
• network analysis for gromacs
  • jing liang (Sat Jun 24 2023 - 02:44:51 CDT)
• network analysis on Windows 11
  • jing liang (Thu Jun 22 2023 - 04:51:45 CDT)
• network path analysis
  • Naveen BK (Tue Oct 15 2019 - 00:17:56 CDT)
  • Tamas Hegedus (Tue Oct 01 2019 - 12:10:48 CDT)
  • Naveen BK (Tue Oct 01 2019 - 04:52:52 CDT)
• Network Path Backtraces
  • amin sagar (Sat Aug 18 2018 - 13:13:41 CDT)
• Network View -- how to Load Network from command line
  • mason H (Tue Sep 02 2014 - 08:14:15 CDT)
  • mason H (Sat Aug 30 2014 - 20:03:09 CDT)
• Network View plugin
  • Vlad Cojocaru (Sat Dec 13 2014 - 07:11:42 CST)
  • Vlad Cojocaru (Sat Dec 13 2014 - 06:40:55 CST)
• NetworkView - Path lengths
  • Anurag Sethi (Tue Oct 07 2014 - 11:12:52 CDT)
  • mason H (Tue Sep 30 2014 - 19:39:53 CDT)
• NetworkView -- Averaging SEPARATE contact.dat files?
  • Anurag Sethi (Tue Oct 07 2014 - 11:16:31 CDT)
  • mason H (Tue Sep 30 2014 - 20:22:31 CDT)
• NeutronRefTools ?
  • Fotis Baltoumas (Fri Jun 16 2017 - 06:40:41 CDT)
  • Claire Loison (Fri Jun 16 2017 - 05:45:51 CDT)
• never mind .. got it
  • Samuel Flores (Thu May 25 2006 - 21:02:47 CDT)
• New "surf" calculations in VMD 1.9.1 beta
  • John Stone (Wed Jan 18 2012 - 11:01:13 CST)
  • Axel Kohlmeyer (Wed Jan 18 2012 - 08:00:54 CST)
  • Ajasja LjubetiÄ� (Wed Jan 18 2012 - 07:17:32 CST)
  • FX (Wed Jan 18 2012 - 06:12:08 CST)
• New AMBER 7 file reader plugin, testers needed :-)
  • MengJuei Hsieh (Fri Nov 22 2002 - 19:58:10 CST)
  • John Stone (Wed Nov 20 2002 - 13:23:32 CST)
• New and updated plugins for VMD 1.8.2 posted
  • John Stone (Wed Mar 24 2004 - 15:17:29 CST)
• New and updated VMD plugins posted (update 4, 7/8/2004)
  • John Stone (Thu Jul 08 2004 - 11:08:11 CDT)
• New Athlon64/Opteron AMD64/EMT64 test version...
  • John Stone (Tue Sep 14 2004 - 21:35:21 CDT)
  • Jerry Ebalunode (Tue Sep 14 2004 - 13:48:44 CDT)
  • John Stone (Tue Sep 14 2004 - 16:49:29 CDT)
• New atom types in VMD
  • Josh Vermaas (Mon Feb 29 2016 - 09:50:45 CST)
  • Josh Vermaas (Mon Feb 29 2016 - 08:43:14 CST)
  • Nash, Anthony (Mon Feb 29 2016 - 00:56:29 CST)
• New BioCoRE server released
  • Robert Brunner (Wed Aug 17 2005 - 11:59:52 CDT)
• New Cartoon and Simulation Question
  • McGuire, Kelly (Wed Jul 18 2018 - 20:22:06 CDT)
  • McGuire, Kelly (Wed Jul 18 2018 - 20:23:03 CDT)
  • Robin Betz (Wed Jul 18 2018 - 20:14:47 CDT)
  • McGuire, Kelly (Wed Jul 18 2018 - 19:18:34 CDT)
• New Cartoon representation - Ubuntu
  • 16.zdsmith_at_gmail.com (Wed Mar 01 2023 - 12:09:48 CST)
• New Cartoon representation problem
  • John Stone (Wed Jan 06 2010 - 12:49:18 CST)
  • Kassem Ghaddar (Tue Jan 05 2010 - 04:09:16 CST)
• new cartoon representation resid selection
  • Owen Vickery (Mon Apr 20 2020 - 05:08:47 CDT)
  • Owen Vickery (Thu Apr 16 2020 - 05:04:27 CDT)
• new color scale
  • John Stone (Tue May 06 2003 - 13:06:01 CDT)
  • Rukman Hertadi (Tue May 06 2003 - 00:44:46 CDT)
• new coordinates
  • Eduard Schreiner (Thu Oct 06 2005 - 06:18:01 CDT)
  • Anna Karawajczyk (Thu Oct 06 2005 - 02:57:55 CDT)
  • Anna Karawajczyk (Thu Oct 06 2005 - 02:35:09 CDT)
• New crystallography plugin
  • Dan Michael O. Heggø (Wed May 09 2012 - 17:33:04 CDT)
  • Dan Michael O. Heggø (Wed May 09 2012 - 16:31:33 CDT)
• New empirical force field tools: Release of R.E.D. Server Dev./R.E.D. Python
  • FyD (Fri Nov 22 2013 - 04:18:53 CST)
• New LAMMPS atom style for TopoTools
  • Almeida-Hernández, Yasser, Dr. (Thu Aug 20 2020 - 03:16:52 CDT)
  • Axel Kohlmeyer (Wed Aug 19 2020 - 10:10:46 CDT)
  • Yasser Almeida-Hernandez (Wed Aug 19 2020 - 09:19:59 CDT)
• new machine problems.
  • John Stone (Tue Aug 14 2007 - 14:49:09 CDT)
  • Fred Moore (Mon Aug 13 2007 - 17:58:46 CDT)
• new macs out
  • John Stone (Wed Oct 19 2005 - 15:36:58 CDT)
  • Eugen Leitl (Wed Oct 19 2005 - 15:10:22 CDT)
• New Molecule (or Load Data) resets viewpoint of Display. Why?
  • John Stone (Wed Mar 07 2007 - 16:41:04 CST)
  • Rob (Tue Mar 06 2007 - 03:28:56 CST)
  • John Stone (Mon Mar 05 2007 - 17:06:29 CST)
  • Axel Kohlmeyer (Mon Mar 05 2007 - 05:24:25 CST)
  • Rob (Sun Mar 04 2007 - 21:27:14 CST)
• New Multi-platform Surface and volume Calculator
  • João Ribeiro (Mon Jul 04 2011 - 16:06:53 CDT)
• New NAMD version 2011-03-03 uses
  • Ada Zhan (Fri Apr 22 2011 - 16:04:52 CDT)
  • Ada Zhan (Fri Apr 22 2011 - 13:35:30 CDT)
• NEW New
  • John Stone (Thu Aug 06 2009 - 10:31:36 CDT)
  • Christian Wohlschlager (Thu Aug 06 2009 - 07:44:37 CDT)
• New OSX Requires 64-bit DMG
  • Gumbart, JC (Fri Jan 03 2020 - 16:02:44 CST)
  • Alex Saad-Falcon (Fri Jan 03 2020 - 11:42:11 CST)
• new problem
  • John Stone (Tue May 26 2009 - 11:05:07 CDT)
• New Release: Planetsweep Revolutionizes Internet Browsing
  • cyclone_at_team.planetsweep.com (Mon Apr 09 2001 - 13:13:23 CDT)
• New Sharp 3D Notebook Available with Linux
  • Eugen Leitl (Tue Mar 22 2005 - 05:35:19 CST)
• New stage?
  • John Stone (Wed Feb 11 2004 - 18:57:25 CST)
  • Jeff Hoch (Tue Feb 10 2004 - 08:30:02 CST)
• new structure file
  • James Lord (Mon Nov 30 2015 - 05:27:35 CST)
• New test version posted...
  • John Stone (Fri May 05 2006 - 19:39:47 CDT)
• new type cross terms in topo tool
  • Axel Kohlmeyer (Sat May 09 2020 - 16:14:11 CDT)
  • omid gh (Sat May 09 2020 - 13:46:15 CDT)
• new user animation question
  • Mauricio Carrillo Tripp (Tue Oct 09 2001 - 20:01:20 CDT)
  • John Stone (Fri Oct 05 2001 - 12:49:10 CDT)
  • tom keyes (Thu Oct 04 2001 - 13:01:01 CDT)
  • B. Bennion (Thu Oct 04 2001 - 10:37:32 CDT)
  • tom keyes (Thu Oct 04 2001 - 09:44:41 CDT)
  • B. Bennion (Thu Oct 04 2001 - 00:47:08 CDT)
  • tom keyes (Wed Oct 03 2001 - 16:37:49 CDT)
• New User Cannot Access VMD on Windows
  • Phelan Jr., Frederick R. Dr. (Fed) (Fri Feb 26 2021 - 19:09:01 CST)
  • Axel Kohlmeyer (Fri Feb 26 2021 - 18:59:05 CST)
  • Phelan Jr., Frederick R. Dr. (Fed) (Fri Feb 26 2021 - 18:20:29 CST)
• New user encounter an error as follows ;please guide me :: Tutorial
  • Nikhil Maroli (Tue Sep 15 2015 - 02:56:47 CDT)
  • Nikhil Maroli (Tue Sep 15 2015 - 00:37:12 CDT)
• New User of VMD
  • John Stone (Wed Jun 18 2003 - 13:43:53 CDT)
  • Shantipriya Tenneti (Wed Jun 18 2003 - 12:37:09 CDT)
• New user questions
  • Michele Andrews - Contractor (Thu Feb 13 2003 - 14:52:35 CST)
  • John Stone (Thu Feb 13 2003 - 13:54:00 CST)
  • Justin Gullingsrud (Thu Feb 13 2003 - 12:29:00 CST)
  • Michele Andrews - Contractor (Thu Feb 13 2003 - 11:11:16 CST)
• new user: how to load output file
  • John Stone (Tue Sep 07 2004 - 16:27:38 CDT)
  • Paul Christopher Millett (Sun Sep 05 2004 - 12:04:40 CDT)
• New version of CatDCD available
  • Justin Gullingsrud (Thu Nov 20 2003 - 15:36:57 CST)
• New version of Molefacture -small molecule modeling tool- posted
  • Joao Ribeiro (Wed Jul 10 2019 - 16:59:50 CDT)
• new version of VMD
  • Sergei Izrailev (Thu Apr 30 1998 - 18:59:15 CDT)
• New version of VMD movie script/plugin available
  • John Stone (Wed Mar 13 2002 - 12:21:54 CST)
  • John Stone (Wed Mar 13 2002 - 10:34:28 CST)
  • John Stone (Wed Mar 13 2002 - 09:34:12 CST)
  • Adrian E. Roitberg (Wed Mar 13 2002 - 07:22:32 CST)
  • Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 07:58:33 CST)
  • John Stone (Wed Mar 13 2002 - 00:04:10 CST)
• New version very slow?
  • Dallas Warren (Thu Jan 08 2004 - 20:17:17 CST)
  • Dallas Warren (Thu Dec 11 2003 - 00:53:38 CST)
  • Dallas Warren (Wed Dec 10 2003 - 22:21:49 CST)
  • John Stone (Wed Dec 10 2003 - 00:07:59 CST)
  • Dallas Warren (Tue Dec 09 2003 - 19:45:09 CST)
• New version very slow? Fixed also...
  • Patrick Ladam (Fri Jan 09 2004 - 09:19:40 CST)
• New version very slow?... me too
  • John Stone (Wed Dec 10 2003 - 09:49:14 CST)
• New VMD 1.8 alpha 20 MacOS X native OpenGL test version...
  • John Stone (Sat Jul 13 2002 - 22:39:49 CDT)
• New VMD 1.8.6b15 installer for Windows XP x64...
  • John Stone (Wed Mar 28 2007 - 18:17:29 CDT)
• New VMD 1.9.4 test versions posted with many new updates/features...
  • John Stone (Fri Dec 13 2019 - 00:09:20 CST)
  • John Stone (Tue Jul 23 2019 - 23:28:39 CDT)
  • Michael Gecht (Fri Jul 19 2019 - 04:11:33 CDT)
  • John Stone (Wed Jul 17 2019 - 15:43:42 CDT)
  • Dallas Warren (Tue Jul 16 2019 - 17:18:16 CDT)
  • John Stone (Tue Jul 16 2019 - 17:28:15 CDT)
  • Dallas Warren (Sun Jul 14 2019 - 20:10:43 CDT)
  • John Stone (Wed Jul 10 2019 - 15:29:12 CDT)
• New VMD CVS tree location, update your aliases...
  • John Stone (Wed Jul 23 2003 - 14:23:55 CDT)
• New VMD development pages
  • John Stone (Mon Sep 27 1999 - 10:42:25 CDT)
• new VMD plugin for H5MD file format
  • John Stone (Thu Apr 09 2015 - 16:02:35 CDT)
  • Jonas Landsgesell (Thu Apr 09 2015 - 15:25:52 CDT)
  • Jonas Landsgesell (Thu Apr 09 2015 - 15:27:50 CDT)
  • Axel Kohlmeyer (Thu Apr 09 2015 - 15:50:37 CDT)
  • John Stone (Wed Apr 08 2015 - 13:25:02 CDT)
  • Jonas Landsgesell (Wed Apr 08 2015 - 08:33:41 CDT)
• new VMD plugin for reading LAMMPS dumps with variable number of atoms
  • Axel Kohlmeyer (Thu Jul 25 2013 - 07:43:34 CDT)
• New VMD User's Guide available
  • Sergei Izrailev (Wed Jul 30 1997 - 15:33:32 CDT)
  • Sergei Izrailev (Tue Jul 29 1997 - 13:08:25 CDT)
• New vmd Windows version crash
  • John Stone (Wed May 20 2009 - 20:57:19 CDT)
  • MyLinkka (Wed May 20 2009 - 07:20:14 CDT)
  • John Stone (Wed May 20 2009 - 06:55:12 CDT)
  • John Stone (Wed May 20 2009 - 06:59:46 CDT)
  • MyLinkka (Wed May 20 2009 - 06:28:10 CDT)
  • MyLinkka (Wed May 20 2009 - 05:29:22 CDT)
  • John Stone (Tue May 19 2009 - 21:08:44 CDT)
  • John Stone (Tue May 19 2009 - 21:02:57 CDT)
  • MyLinkka (Tue May 19 2009 - 05:14:34 CDT)
• New VMD-L subject lines...
  • John Stone (Tue Jul 22 2003 - 16:53:05 CDT)
• newbie issues
  • Axel Kohlmeyer (Tue Sep 02 2008 - 14:10:19 CDT)
  • markus mooslechner (Tue Sep 02 2008 - 13:39:19 CDT)
• Newbie question - Labeling a residue
  • Axel Kohlmeyer (Mon Nov 04 2013 - 08:21:26 CST)
  • Axel Kohlmeyer (Mon Nov 04 2013 - 07:23:52 CST)
  • Axel Kohlmeyer (Mon Nov 04 2013 - 07:21:25 CST)
  • bharat gupta (Mon Nov 04 2013 - 07:23:35 CST)
  • bharat gupta (Mon Nov 04 2013 - 06:07:47 CST)
• Newbie Questions
  • Peter Freddolino (Sun Jul 06 2008 - 22:06:53 CDT)
  • Paul Dennis Simonson (Sun Jul 06 2008 - 21:15:13 CDT)
• Newby unable to see secondary structure in New Cartoon
  • Gary Turner (Tue Nov 06 2018 - 14:44:59 CST)
  • John Stone (Sun Nov 04 2018 - 20:59:58 CST)
  • Gary Turner (Sat Nov 03 2018 - 12:40:19 CDT)
• NewCartoon and mol2 files
  • John Stone (Thu Jun 01 2006 - 12:36:29 CDT)
  • John Stone (Wed May 31 2006 - 10:55:47 CDT)
  • David Chalmers (Wed May 31 2006 - 06:11:33 CDT)
• NewCartoon not among Drawing methods
  • John Stone (Wed Jun 10 2009 - 10:44:13 CDT)
  • Stefano Meliga (Wed Jun 10 2009 - 10:36:41 CDT)
  • Stefano Meliga (Wed Jun 10 2009 - 10:24:26 CDT)
  • Stefano Meliga (Wed Jun 10 2009 - 10:04:09 CDT)
  • John Stone (Wed Jun 10 2009 - 09:49:59 CDT)
  • John Stone (Wed Jun 10 2009 - 10:06:53 CDT)
  • Stefano Meliga (Wed Jun 10 2009 - 08:48:26 CDT)
• NewCartoon or NewRibbons Secondary Structure methods don't work with latest updated Mesa 22.2.3
  • David Carrasco de Busturia (Wed Jan 25 2023 - 02:10:51 CST)
  • John Stone (Thu Dec 29 2022 - 11:17:52 CST)
  • David Carrasco de Busturia (Sat Nov 19 2022 - 05:48:51 CST)
• NewCartoons / STRIDE problem
  • Samuel Coulbourn Flores 花山 (Fri May 16 2008 - 16:06:17 CDT)
  • John Stone (Fri May 16 2008 - 14:55:56 CDT)
  • Samuel Coulbourn Flores 花山 (Sat May 10 2008 - 18:16:21 CDT)
• NewRibbons/NewCartoon problem due to missing CUDA ?
  • Axel Kohlmeyer (Thu Feb 02 2012 - 07:52:24 CST)
  • thereal sisterdot (Thu Feb 02 2012 - 05:49:34 CST)
  • John Stone (Tue Jan 31 2012 - 15:47:00 CST)
  • Ajasja LjubetiÄ� (Tue Jan 31 2012 - 08:32:01 CST)
  • Axel Kohlmeyer (Tue Jan 31 2012 - 07:18:10 CST)
  • thereal sisterdot (Mon Jan 30 2012 - 05:27:33 CST)
• Nightly VMD web updates running again...
  • John Stone (Tue Aug 03 2004 - 10:20:37 CDT)
• NMR module in VMD ?
  • Patrick Ladam (Tue Sep 02 2003 - 05:00:41 CDT)
• NMWiz - a new VMD plugin
  • Ahmet Bakan (Tue Apr 12 2011 - 11:51:36 CDT)
• NMWiz Arrow Colors
  • Mcguire, Kelly (Thu Mar 21 2024 - 17:50:01 CDT)
• No 'Primary File Type' in Load menu (v1.8a10 on MacOSX)
  • John Stone (Thu Jun 20 2002 - 10:12:40 CDT)
  • Christian Simon (Thu Jun 20 2002 - 08:01:20 CDT)
• No bonds
  • John Stone (Thu Aug 25 2005 - 18:11:57 CDT)
  • Jindal Shah (Wed Aug 24 2005 - 11:35:11 CDT)
  • John Stone (Wed Aug 24 2005 - 10:21:05 CDT)
  • Jindal Shah (Wed Aug 24 2005 - 10:06:09 CDT)
• No bonds in the generated psf file
  • Anurag Sharma (Wed Apr 17 2013 - 23:33:21 CDT)
  • John Stone (Wed Apr 17 2013 - 21:51:14 CDT)
  • Anurag Sharma (Wed Apr 17 2013 - 21:25:30 CDT)
  • Anurag Sharma (Wed Apr 17 2013 - 21:34:36 CDT)
  • John Stone (Wed Apr 17 2013 - 21:07:42 CDT)
  • Anurag Sharma (Wed Apr 17 2013 - 20:59:28 CDT)
  • John Stone (Wed Apr 17 2013 - 20:48:35 CDT)
  • Anurag Sharma (Wed Apr 17 2013 - 19:37:42 CDT)
  • Josh Vermaas (Wed Apr 17 2013 - 18:32:56 CDT)
  • Josh Vermaas (Wed Apr 17 2013 - 17:34:14 CDT)
  • Anurag Sharma (Wed Apr 17 2013 - 17:52:16 CDT)
  • Anurag Sharma (Wed Apr 17 2013 - 14:54:35 CDT)
• no convergence in align
  • John Stone (Fri Feb 29 2008 - 12:39:20 CST)
  • Jorgen Simonsen (Fri Feb 29 2008 - 12:15:49 CST)
  • John Stone (Fri Feb 29 2008 - 11:07:38 CST)
  • John Stone (Fri Feb 29 2008 - 10:05:34 CST)
  • Axel Kohlmeyer (Fri Feb 29 2008 - 09:25:23 CST)
  • Jorgen Simonsen (Fri Feb 29 2008 - 07:03:18 CST)
• No Display when running vmd 1.3
  • John Stone (Thu May 27 1999 - 16:00:02 CDT)
  • Charles Schwieters (Thu May 27 1999 - 16:03:58 CDT)
  • Dr. David Gregory (Fri May 28 1999 - 08:31:57 CDT)
  • Dr. David Gregory (Thu May 27 1999 - 14:53:51 CDT)
• No error details for VMD compilation from Source.
  • John Stone (Thu Jan 21 2016 - 10:12:42 CST)
  • Munir Ahmad (Thu Jan 21 2016 - 09:45:35 CST)
  • Munir Ahmad (Fri Jan 15 2016 - 12:04:48 CST)
  • Munir Ahmad (Thu Jan 14 2016 - 15:40:53 CST)
  • John Stone (Thu Jan 14 2016 - 15:50:29 CST)
• No ffTK .gau Extension in Determine File Type in VMD for Visualization Problem?
  • Joel Subach (Thu Mar 23 2023 - 13:45:28 CDT)
  • Gumbart, JC (Thu Mar 23 2023 - 13:29:13 CDT)
  • Gumbart, JC (Thu Mar 23 2023 - 10:50:53 CDT)
  • Gumbart, JC (Wed Mar 22 2023 - 16:40:10 CDT)
  • Joel Subach (Fri Mar 17 2023 - 16:04:23 CDT)
• No file upon rendering
  • Axel Kohlmeyer (Mon Aug 10 2020 - 10:26:23 CDT)
  • Holland J.O. (Mon Aug 10 2020 - 06:22:06 CDT)
• no main window
  • Eckhart Guthöhrlein (Tue Aug 24 2004 - 09:25:07 CDT)
  • John Stone (Tue Aug 24 2004 - 09:18:44 CDT)
  • J. Rui Rodrigues (Tue Aug 24 2004 - 06:21:44 CDT)
  • Eckhart Guthöhrlein (Tue Aug 24 2004 - 06:11:06 CDT)
• no main window with ATI openGL
  • Eduard Schreiner (Wed Oct 04 2006 - 08:05:37 CDT)
  • Olaf Lenz (Wed Oct 04 2006 - 08:11:02 CDT)
  • Loison Claire (Wed Oct 04 2006 - 05:15:04 CDT)
• No native HOOMD xml support for Windows?
  • Axel Kohlmeyer (Mon Apr 14 2014 - 12:06:42 CDT)
  • Joshua Dempster (Mon Apr 14 2014 - 11:10:51 CDT)
• No NetCDF file type for Mac Catalina
  • Luis Claudio Pessoa Dias (Sun Aug 23 2020 - 10:29:04 CDT)
  • John Stone (Sat Aug 22 2020 - 00:28:02 CDT)
  • Luis Claudio Pessoa Dias (Wed Aug 19 2020 - 09:10:39 CDT)
• No prescr1ption? No problem!
  • Buford Greene (Sat Aug 25 2007 - 09:27:00 CDT)
  • Ferdinand Benton (Sun Aug 19 2007 - 10:50:20 CDT)
• No residue of segment error
  • Isuru Herath (Sun Feb 07 2021 - 14:16:26 CST)
• No sequence tool for DNA
  • John Stone (Tue Jul 23 2002 - 22:01:06 CDT)
  • Stéphane Teletchéa (Mon Jul 22 2002 - 04:53:57 CDT)
• No stereo display support in Windows Vista...
  • John Stone (Tue Aug 08 2006 - 11:26:07 CDT)
  • Marc Baaden (Tue Aug 08 2006 - 02:11:28 CDT)
  • John Stone (Mon Aug 07 2006 - 23:38:02 CDT)
  • Warren DeLano (Mon Aug 07 2006 - 22:06:10 CDT)
  • John Stone (Mon Aug 07 2006 - 12:52:00 CDT)
• No stereo mode in vmd -dispdev none ??
  • John Stone (Thu Nov 07 2002 - 16:46:02 CST)
  • Marc Baaden (Wed Nov 06 2002 - 07:15:03 CST)
• no subject
  • dimka (Mon Sep 18 2006 - 13:50:55 CDT)
  • tnels_at_sfu.ca (Fri Sep 15 2006 - 20:18:21 CDT)
  • Gadi Oron (Sun Apr 18 2004 - 03:50:37 CDT)
• No timestep available for 'within' search!
  • John Stone (Mon Oct 07 2013 - 16:46:15 CDT)
  • Nupur Bansal (Mon Oct 07 2013 - 15:42:15 CDT)
  • John Stone (Mon Oct 07 2013 - 15:38:17 CDT)
  • Nupur Bansal (Mon Oct 07 2013 - 15:28:04 CDT)
• no transparency on newest iMacs
  • John Stone (Fri Oct 05 2007 - 01:35:41 CDT)
  • Christoph Weber (Thu Oct 04 2007 - 15:56:56 CDT)
  • John Stone (Wed Oct 03 2007 - 19:12:40 CDT)
  • Christoph Weber (Wed Oct 03 2007 - 19:05:21 CDT)
• NOC (current version 1.5.2.10) a new, free program for protein structure model-building, visualization, validation and analysis
  • Chenmengen (Tue Mar 29 2005 - 19:07:52 CST)
• NOC 3.0 is released
  • chenmengen (Wed May 16 2007 - 14:01:37 CDT)
• Node selection in network view
  • GAGANJYOT KAUR BAKSHI (Tue Apr 04 2023 - 00:29:10 CDT)
• non-bonded interactions
  • Bahaa Mostafa (Sun Dec 28 2014 - 00:39:47 CST)
  • Josh Vermaas (Thu Dec 25 2014 - 21:52:34 CST)
  • Bahaa Mostafa (Wed Dec 24 2014 - 23:42:56 CST)
  • Ashar Malik (Thu Dec 25 2014 - 00:03:08 CST)
  • Ashar Malik (Wed Dec 24 2014 - 06:43:07 CST)
  • Bahaa Mostafa (Wed Dec 24 2014 - 02:54:43 CST)
• non-bonded residue-residue namdEnergy question
  • Prof. Eddie (Mon Feb 11 2013 - 08:51:38 CST)
• Non-cuda version of VMD on Linux?
  • Axel Kohlmeyer (Sun May 22 2011 - 05:17:34 CDT)
  • Ismail, Mohd F. (Sun May 22 2011 - 02:22:23 CDT)
  • John Stone (Sat May 21 2011 - 22:22:42 CDT)
  • Ismail, Mohd F. (Sat May 21 2011 - 22:02:01 CDT)
• Non-functional RMSD Visualizer in 1.9.4a53, windows
  • John Stone (Tue Jul 05 2022 - 23:02:21 CDT)
  • Jason Smith (Fri May 06 2022 - 14:37:56 CDT)
• non-heme iron coordination with His in NAMD2
  • Anna Petroff (Thu Mar 15 2018 - 14:31:27 CDT)
  • JC Gumbart (Thu Mar 15 2018 - 13:48:51 CDT)
  • Anna Petroff (Thu Mar 15 2018 - 13:45:40 CDT)
  • Vermaas, Joshua (Thu Mar 15 2018 - 12:21:21 CDT)
  • Anna Petroff (Thu Mar 15 2018 - 10:33:15 CDT)
• Non-natural amino acid issues with autopsf
  • Paul O'Leary (Thu Aug 20 2020 - 04:19:38 CDT)
• non-orthorhombic PBCs
  • Jaap Kroes (Thu Sep 26 2013 - 04:10:58 CDT)
  • Axel Kohlmeyer (Thu Sep 26 2013 - 00:56:36 CDT)
  • Jaap Kroes (Wed Sep 25 2013 - 20:14:39 CDT)
• Non-protein Multiple-Frame File
  • Axel Kohlmeyer (Mon May 24 2004 - 08:59:05 CDT)
  • Anthony Ivetac (Mon May 24 2004 - 06:44:54 CDT)
• Non-serious query
  • DongHoon Chung (Thu Mar 04 2004 - 18:16:23 CST)
  • John Stone (Thu Mar 04 2004 - 10:54:22 CST)
  • Sanjeev B.S. (Thu Mar 04 2004 - 00:11:31 CST)
  • John Stone (Wed Mar 03 2004 - 13:20:30 CST)
  • Jérôme Hénin (Wed Mar 03 2004 - 12:03:13 CST)
  • Sanjeev B.S. (Wed Mar 03 2004 - 11:29:29 CST)
  • Brian Bennion (Wed Mar 03 2004 - 11:23:33 CST)
  • Sanjeev B.S. (Wed Mar 03 2004 - 09:54:34 CST)
• non-standard residue
  • John Stone (Mon May 28 2007 - 15:50:41 CDT)
  • Nathan C. Rockwell (Fri May 25 2007 - 11:20:57 CDT)
  • Stern, Julie (Thu May 24 2007 - 21:15:31 CDT)
• non-standard solvents
  • faride badalkhani (Thu Jun 02 2016 - 12:54:20 CDT)
• Non-standard solvents in Solvate
  • Raman Preet Singh (Wed Aug 12 2020 - 12:44:32 CDT)
  • Josh Vermaas (Thu Jul 30 2020 - 16:26:05 CDT)
  • Peter Freddolino (Thu Jul 30 2020 - 15:44:22 CDT)
  • Raman Preet Singh (Thu Jul 30 2020 - 13:29:52 CDT)
• non-water solvent prepared by VMD
  • John Stone (Thu May 26 2016 - 12:32:21 CDT)
  • Deng, Jinxia (Nancy) (Thu May 26 2016 - 12:22:45 CDT)
• nonbond and covalent bond
  • Marzieh Dehghan (Sun Aug 11 2013 - 06:53:38 CDT)
• Nonbond energy between 3 part
  • Ashar Malik (Wed Dec 13 2017 - 01:34:08 CST)
  • jrhau lung (Tue Dec 12 2017 - 21:04:04 CST)
  • jrhau lung (Tue Dec 12 2017 - 22:04:57 CST)
  • Ashar Malik (Tue Dec 12 2017 - 21:41:31 CST)
  • Peter Freddolino (Tue Dec 12 2017 - 21:50:52 CST)
  • Ashar Malik (Tue Dec 12 2017 - 08:43:02 CST)
  • Peter Freddolino (Tue Dec 12 2017 - 07:25:16 CST)
  • jrhau lung (Tue Dec 12 2017 - 01:13:10 CST)
  • Giacomo Fiorin (Mon Dec 11 2017 - 21:51:19 CST)
  • jrhau lung (Mon Dec 11 2017 - 20:52:21 CST)
• nonbond interaction energy
  • Peter Freddolino (Fri May 04 2007 - 13:23:48 CDT)
  • lanhua (Fri May 04 2007 - 12:14:55 CDT)
• nonstandard solvate + cyclic peptides in explicit DMSO box + gofr
  • Axel Kohlmeyer (Thu Jul 26 2007 - 11:48:08 CDT)
  • John Stone (Thu Jul 26 2007 - 11:33:52 CDT)
  • Peter Freddolino (Thu Jul 26 2007 - 07:41:24 CDT)
  • sfrickenhaus (Thu Jul 26 2007 - 04:45:13 CDT)
• Normal mode analysis
  • Kliuchnikov, Evgenii (Thu Sep 12 2019 - 18:11:16 CDT)
  • John Stone (Tue Apr 19 2005 - 16:45:19 CDT)
  • David Poger (Tue Apr 19 2005 - 08:02:57 CDT)
• Normal mode analysis in VMD
  • Vani Krishna (Sun Nov 12 2006 - 22:00:20 CST)
• Normal VMD crashed when pdb load but Debug mode works
  • Axel Kohlmeyer (Mon Oct 08 2007 - 11:41:09 CDT)
  • John Stone (Mon Oct 08 2007 - 11:48:43 CDT)
  • weilin Zhang (Mon Oct 08 2007 - 09:45:50 CDT)
• Normalization of RDFs in gofr plugin
  • Axel Kohlmeyer (Tue Jun 28 2011 - 18:08:31 CDT)
  • gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
  • Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
  • gaborekt_at_duq.edu (Tue Jun 28 2011 - 12:34:37 CDT)
• Not able to read a restart file from AMBER
  • MengJuei Hsieh (Mon Jul 15 2002 - 15:48:53 CDT)
  • Stéphane Teletchéa (Mon Jul 15 2002 - 06:17:26 CDT)
• Not all frames loaded
  • Davit Hakobyan (Tue Mar 01 2016 - 23:39:41 CST)
  • Davit Hakobyan (Tue Mar 01 2016 - 14:11:45 CST)
  • Ajasja LjubetiÄ� (Tue Mar 01 2016 - 05:02:32 CST)
  • Davit Hakobyan (Tue Mar 01 2016 - 04:37:49 CST)
  • Ashar Malik (Mon Feb 29 2016 - 15:24:14 CST)
  • Josh Vermaas (Mon Feb 29 2016 - 15:35:40 CST)
  • Davit Hakobyan (Mon Feb 29 2016 - 13:28:03 CST)
• Not calculate bonds by default.
  • Axel Kohlmeyer (Thu Mar 10 2011 - 19:08:44 CST)
  • Eric Germaneau (Fri Mar 11 2011 - 07:12:04 CST)
• not to display atoms in certain region
  • Axel Kohlmeyer (Fri Jun 24 2011 - 16:09:33 CDT)
  • John Stone (Fri Jun 24 2011 - 15:45:31 CDT)
  • pouyan farzinpor (Fri Jun 24 2011 - 15:29:11 CDT)
  • John Stone (Fri Jun 24 2011 - 15:01:06 CDT)
  • pouyan farzinpor (Fri Jun 24 2011 - 14:53:03 CDT)
• not very helpful documentation
  • Philippe Bopp / temporary (Wed Nov 28 2012 - 10:58:32 CST)
  • Joaquim Rui de Castro Rodrigues (Wed Nov 28 2012 - 10:50:30 CST)
  • Axel Kohlmeyer (Wed Nov 28 2012 - 10:40:12 CST)
  • Philippe Bopp / temporary (Wed Nov 28 2012 - 09:02:28 CST)
• not work "selection atoms" for trajectory of dl_poly
  • hamid mosaddeghi (Mon Jun 03 2013 - 00:07:38 CDT)
  • Salomon Turgman Cohen (Sun Jun 02 2013 - 18:51:48 CDT)
  • Axel Kohlmeyer (Sat Jun 01 2013 - 11:05:38 CDT)
  • hamid mosaddeghi (Sat Jun 01 2013 - 09:55:06 CDT)
• Note about VMD 1.8.1 on on MacOS X 10.1.x....
  • John Stone (Mon Jul 07 2003 - 17:20:21 CDT)
• Note to VMD-L about posting attachments etc...
  • John Stone (Mon Jan 26 2009 - 15:58:53 CST)
• Nothing happens with Window's install
  • John Stone (Tue Feb 05 2002 - 12:50:45 CST)
  • John Stone (Tue Feb 05 2002 - 11:33:43 CST)
  • Keith Oxenrider (Tue Feb 05 2002 - 11:25:23 CST)
• novel residue creation and parameterization
  • Prof. Eddie (Wed Feb 03 2021 - 10:14:56 CST)
  • Peter Freddolino (Thu Jan 28 2021 - 16:21:29 CST)
  • Prof. Eddie (Thu Jan 28 2021 - 15:22:59 CST)
  • Smith, Harper E. (Thu Jan 28 2021 - 14:36:52 CST)
  • Prof. Eddie (Thu Jan 28 2021 - 14:21:13 CST)
  • Peter Freddolino (Thu Jan 28 2021 - 12:23:51 CST)
  • Mariano Spivak (Thu Jan 28 2021 - 11:40:10 CST)
  • Prof. Eddie (Thu Jan 28 2021 - 10:45:17 CST)
  • Peter Freddolino (Wed Jan 27 2021 - 20:13:30 CST)
  • Prof. Eddie (Wed Jan 27 2021 - 17:46:11 CST)
  • Vermaas, Josh (Wed Jan 27 2021 - 12:01:29 CST)
  • Smith, Harper E. (Wed Jan 27 2021 - 11:42:22 CST)
  • Raman Preet Singh (Wed Jan 27 2021 - 11:28:56 CST)
  • Prof. Eddie (Wed Jan 27 2021 - 08:33:12 CST)
• Novint Falcon
  • Axel Kohlmeyer (Tue Oct 19 2010 - 08:19:49 CDT)
  • Christian Wohlschlager (Tue Oct 19 2010 - 07:22:21 CDT)
• Novint Falcon in VMD - help with setup
  • Filip Persson (Wed Jul 20 2011 - 05:12:44 CDT)
• NT in bilayer
  • RAHUL SURESH (Sun Aug 23 2020 - 15:19:33 CDT)
• ntdll.dll problem when changing drawing methods
  • Paul Van Allsburg (Tue Jan 31 2006 - 10:53:24 CST)
  • John Stone (Mon Jan 30 2006 - 16:32:10 CST)
  • Paul Van Allsburg (Mon Jan 30 2006 - 14:06:54 CST)
• ntermolecular atomselection
  • Axel Kohlmeyer (Thu Jul 26 2007 - 11:35:46 CDT)
  • Nuno Loureiro Ferreira (Thu Jul 26 2007 - 03:23:25 CDT)
  • Robert Wohlhueter (Thu Jul 26 2007 - 00:27:38 CDT)
• Nucleic acid topology file for PSF generation
  • Jim Parker (Fri Dec 04 2009 - 22:13:50 CST)
  • Schreiner Eduard (Thu Dec 03 2009 - 23:01:58 CST)
  • Jim Parker (Thu Dec 03 2009 - 21:56:00 CST)
• number of atoms changes on loading .cms file
  • Axel Kohlmeyer (Fri Apr 26 2013 - 02:50:10 CDT)
  • Nidhi Jatana (Fri Apr 26 2013 - 02:04:09 CDT)
• number of frames in pdb file?
  • andrea spitaleri (Fri May 26 2006 - 03:01:41 CDT)
  • Samuel Flores (Thu May 25 2006 - 20:08:23 CDT)
• Number of Frames in VMD
  • Axel Kohlmeyer (Fri Feb 23 2007 - 09:05:15 CST)
  • Rita Cassia (Fri Feb 23 2007 - 07:48:39 CST)
• Number of H bond formation in VMD
  • Axel Kohlmeyer (Fri Jan 29 2010 - 09:18:32 CST)
  • snoze pa (Thu Jan 28 2010 - 17:32:10 CST)
• Number of Hydrogen Bonds among Water an Protein
  • Mert Gür (Tue Jan 26 2010 - 15:31:45 CST)
  • Axel Kohlmeyer (Tue Jan 26 2010 - 15:39:18 CST)
  • Axel Kohlmeyer (Mon Jan 25 2010 - 08:55:05 CST)
  • Mert Gür (Mon Jan 25 2010 - 07:50:25 CST)
  • Leonardo Trabuco (Sun Jan 24 2010 - 16:42:01 CST)
  • Mert Gür (Sun Jan 24 2010 - 14:25:52 CST)
  • Mert Gür (Sun Jan 24 2010 - 14:00:32 CST)
  • Leonardo Trabuco (Sun Jan 24 2010 - 13:22:31 CST)
  • Mert Gür (Sun Jan 24 2010 - 13:17:09 CST)
• Number of pdb and psf atoms are not the same!
  • Ashar Malik (Wed Dec 16 2015 - 09:57:47 CST)
  • Francesco Pietra (Wed Dec 16 2015 - 10:14:12 CST)
  • Francesco Pietra (Wed Dec 16 2015 - 09:23:41 CST)
• Number of water molecules as a function of residue
  • Akash Pandya (Tue Nov 24 2020 - 04:07:02 CST)
• number of water molecules within 5 angstroms of the ligand
  • Joshua Skootsky (Wed May 07 2014 - 07:22:04 CDT)
  • Joshua Skootsky (Tue May 06 2014 - 13:38:46 CDT)
  • Ana Celia Vila Verde (Tue May 06 2014 - 01:35:14 CDT)
  • Josh Vermaas (Mon May 05 2014 - 14:06:43 CDT)
  • Maxim Belkin (Mon May 05 2014 - 13:41:34 CDT)
  • Ramin Ekhteiari (Mon May 05 2014 - 13:05:21 CDT)
  • Ramin Ekhteiari (Mon May 05 2014 - 13:03:34 CDT)
  • Axel Kohlmeyer (Mon May 05 2014 - 05:30:00 CDT)
  • Ramin Ekhteiari (Mon May 05 2014 - 03:47:17 CDT)
• number of waters around a protein
  • L. Michel Espinoza-Fonseca (Mon Feb 13 2006 - 06:05:23 CST)
• numbonds
  • Axel Kohlmeyer (Tue Aug 28 2007 - 12:05:46 CDT)
  • Eduard Schreiner (Tue Aug 28 2007 - 10:54:20 CDT)
• Numeric Library of Python for VMD 1.8.7
  • Yue Yang (Thu Feb 18 2010 - 00:08:41 CST)
  • John Stone (Thu Feb 18 2010 - 00:11:12 CST)
  • Axel Kohlmeyer (Wed Feb 17 2010 - 23:36:39 CST)
  • Yue Yang (Wed Feb 17 2010 - 22:22:27 CST)
• numeric python
  • Justin Gullingsrud (Mon Mar 08 2004 - 09:49:27 CST)
  • Brian Bennion (Mon Mar 08 2004 - 10:07:17 CST)
  • John Stone (Mon Mar 08 2004 - 10:17:18 CST)
  • Dmitry Kovalsky (Mon Mar 08 2004 - 05:01:39 CST)
• Numerical data from electrostatic calculations
  • Brian Radak (Fri Mar 17 2017 - 11:09:18 CDT)
  • John Stone (Fri Mar 17 2017 - 11:10:03 CDT)
  • horst_at_lillig.de (Fri Mar 17 2017 - 02:53:37 CDT)
• numerical output for SURF?
  • John Stone (Wed Sep 10 2003 - 15:42:33 CDT)
  • suzie.k.hight.1 (Wed Sep 10 2003 - 13:24:15 CDT)
• NUMLP NUMLPH section eliminated by VMD 1.9.4a57
  • Diego Gomes (Tue May 21 2024 - 09:03:17 CDT)
  • Roni Saiba (Mon May 20 2024 - 22:22:06 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Mon May 20 2024 - 14:05:58 CDT)
  • Diego Gomes (Wed May 15 2024 - 10:58:07 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Wed May 15 2024 - 07:07:12 CDT)
  • Diego Gomes (Tue May 14 2024 - 10:18:44 CDT)
  • DENILSON FERREIRA DE OLIVEIRA (Tue May 14 2024 - 08:06:59 CDT)
• NuVision glasses
  • Grischa Meyer (Mon Sep 11 2006 - 19:41:25 CDT)
• Nvidia 3D vision not working in Windows 10
  • John Stone (Wed Mar 06 2019 - 23:43:53 CST)
  • Carlos Simmerling (Wed Mar 06 2019 - 12:25:49 CST)
  • John Stone (Mon Aug 27 2018 - 10:22:28 CDT)
  • Carlos Simmerling (Mon Aug 27 2018 - 10:32:30 CDT)
  • Carlos Simmerling (Mon Aug 27 2018 - 10:20:02 CDT)
  • John Stone (Mon Aug 27 2018 - 10:10:00 CDT)
  • Carlos Simmerling (Mon Aug 27 2018 - 08:26:35 CDT)
• nvidia 6106 kernel drivers and opengl
  • John Stone (Tue Jul 13 2004 - 21:00:36 CDT)
  • Jerry Ebalunode (Tue Jul 13 2004 - 20:00:21 CDT)
• nvidia cuda mismatch
  • John Stone (Sun Aug 23 2015 - 19:59:56 CDT)
  • Andrea Spitaleri (Sun Aug 23 2015 - 11:21:05 CDT)
  • Andrea Spitaleri (Wed Aug 19 2015 - 02:02:47 CDT)
  • John Stone (Tue Aug 18 2015 - 14:02:40 CDT)
  • Andrea Spitaleri (Tue Aug 18 2015 - 04:10:24 CDT)
  • James Kress (Sat Aug 15 2015 - 15:31:11 CDT)
  • John Stone (Thu Aug 13 2015 - 16:38:06 CDT)
  • Josh Vermaas (Thu Aug 13 2015 - 15:27:55 CDT)
  • andrea spitaleri (Thu Aug 13 2015 - 10:58:39 CDT)
• nvidia driver
  • John Stone (Wed Oct 01 2003 - 14:08:32 CDT)
  • Alan Wilter Sousa da Silva (Tue Sep 30 2003 - 09:30:48 CDT)
  • John Stone (Tue Sep 30 2003 - 10:04:21 CDT)
• nVidia Driver 7664 for Linux
  • John Stone (Thu Jun 02 2005 - 13:27:02 CDT)
  • Warren DeLano (Thu Jun 02 2005 - 11:41:38 CDT)
• nvidia drivers and 64bit OS VMD/PYMOL
  • John Stone (Mon Oct 24 2005 - 13:18:36 CDT)
  • asimplefunguy_at_netscape.net (Mon Oct 24 2005 - 09:10:23 CDT)
• NVidia GeForce 3D Vision
  • John Stone (Tue May 19 2009 - 20:28:10 CDT)
  • Christoph Weber (Tue May 19 2009 - 12:38:08 CDT)
• NVIDIA GeForce GT 750M and CUDA
  • John Stone (Sat Oct 26 2013 - 11:56:56 CDT)
  • Ebert Maximilian (Sat Oct 26 2013 - 10:49:33 CDT)
  • Ebert Maximilian (Fri Oct 25 2013 - 15:06:36 CDT)
• NVidia GeForce issues on PCs (article URL)
  • John Stone (Tue Feb 05 2002 - 14:25:30 CST)
• Nvidia GPU driver not detected with VMD
  • anu chandra (Fri Feb 27 2015 - 14:14:59 CST)
  • John Stone (Fri Feb 27 2015 - 08:58:44 CST)
  • anu chandra (Fri Feb 27 2015 - 08:55:16 CST)
  • John Stone (Fri Feb 27 2015 - 08:16:00 CST)
  • anu chandra (Fri Feb 27 2015 - 07:58:43 CST)
  • John Stone (Fri Feb 27 2015 - 07:29:56 CST)
  • Norman Geist (Fri Feb 27 2015 - 07:29:06 CST)
  • anu chandra (Fri Feb 27 2015 - 04:31:00 CST)
• Nvidia graphics card with VMD
  • Berit Hinnemann (Fri Oct 20 2006 - 07:13:42 CDT)
• NVidia OpenGL HOWTO for Linux users...
  • John Stone (Tue Mar 27 2001 - 01:01:37 CST)
• nvidia optimus problem for 1.9.2
  • Albert (Wed Jan 21 2015 - 12:05:14 CST)
• NVIDIA Quadro - CrystalEyes - Linux
  • John Stone (Tue Sep 30 2003 - 11:03:20 CDT)
  • EPF (Esben Peter Friis) (Tue Sep 30 2003 - 08:45:41 CDT)
  • Jérôme Hénin (Tue Sep 30 2003 - 09:39:35 CDT)
  • EPF (Esben Peter Friis) (Tue Sep 30 2003 - 09:27:56 CDT)
  • Jérôme Hénin (Tue Sep 30 2003 - 09:13:20 CDT)
  • Jérôme Hénin (Tue Sep 30 2003 - 08:20:52 CDT)
• NVIDIA Quadro - CrystalEyes - Windows]
  • John Stone (Mon Oct 06 2003 - 17:39:34 CDT)
• Nvidia quadro Fx1300 problem
  • Federico Filomia (Mon Aug 01 2011 - 02:25:42 CDT)
  • Axel Kohlmeyer (Fri Jul 29 2011 - 10:39:19 CDT)
  • John Stone (Fri Jul 29 2011 - 09:57:18 CDT)
  • Federico Filomia (Fri Jul 29 2011 - 03:55:25 CDT)
• nVidia Quadro FX1400 Stereo Clone Mode
  • John Stone (Wed Mar 08 2006 - 13:35:48 CST)
  • Paul Van Allsburg (Wed Mar 08 2006 - 13:01:31 CST)
• nvidia quadro, linux_x86, and performance difference w/nvidia drivers 1.0.5336 vs anything newer or older on VMD 1.8.2
  • John Stone (Tue Jan 04 2005 - 18:22:52 CST)
  • Sabuj Pattanayek (Tue Jan 04 2005 - 18:17:30 CST)
  • John Stone (Tue Jan 04 2005 - 17:45:07 CST)
  • Sabuj Pattanayek (Tue Jan 04 2005 - 17:28:46 CST)
  • John Stone (Tue Jan 04 2005 - 16:26:29 CST)
  • Sabuj Pattanayek (Tue Jan 04 2005 - 16:06:39 CST)
• Nvidia update 1.0-7664 success for VMD-1.8.3
  • Dow Hurst DPHURST (Tue Jun 21 2005 - 16:49:37 CDT)
• nvidia woes.
  • John Stone (Tue Sep 12 2000 - 11:04:08 CDT)
  • Kim Branson (Mon Sep 11 2000 - 21:10:28 CDT)
• NVIDIA, SGI and VA Linux To Bring Graphics Standard To Desktop Linux Market
  • Eugene Leitl (Wed Jan 19 2000 - 19:21:19 CST)
• NVT system: constant energy, small DCD file size
  • ZEINAB EMAMI (Thu Jul 24 2014 - 06:42:49 CDT)
• NYT article on SARS-CoV-2 aerosol+virion simulations w/ NAMD+VMD
  • Strahs, Dr. Daniel Bernard (Thu Dec 02 2021 - 09:49:34 CST)
  • John Stone (Wed Dec 01 2021 - 13:11:51 CST)
• obj export
  • John Stone (Wed Mar 11 2009 - 11:15:23 CDT)
  • Raluca Mihaela ANDREI (Wed Mar 11 2009 - 10:55:03 CDT)
  • Raluca Mihaela ANDREI (Wed Mar 11 2009 - 10:04:07 CDT)
  • John Stone (Wed Mar 11 2009 - 10:15:18 CDT)
  • John Stone (Tue Mar 10 2009 - 21:56:21 CDT)
  • John Stone (Tue Mar 10 2009 - 12:01:10 CDT)
  • Axel Kohlmeyer (Tue Mar 10 2009 - 10:25:07 CDT)
  • Raluca Mihaela ANDREI (Tue Mar 10 2009 - 10:02:01 CDT)
  • Axel Kohlmeyer (Tue Mar 10 2009 - 09:24:01 CDT)
  • Raluca Mihaela ANDREI (Tue Mar 10 2009 - 03:27:40 CDT)
• OBJ rendering with multiple colors and transparency
  • John Stone (Fri Apr 19 2019 - 11:52:54 CDT)
  • Luc Boisvert (Wed Apr 17 2019 - 17:41:52 CDT)
• obj/mtl and isosurface as wireframe, possibly a small bug
  • Luciano Abriata (Mon May 13 2019 - 12:13:27 CDT)
  • Luciano Abriata (Fri Apr 26 2019 - 02:54:40 CDT)
• Obscure bug in RMSD tool (the original)
  • Tristan Croll (Thu Jan 21 2016 - 02:41:42 CST)
• obscurity in sbcg tutorial description
  • Francesco Pietra (Sat Jan 09 2010 - 03:37:49 CST)
• obtain a list of residue numbers
  • kirtana S (Mon Jul 07 2014 - 12:11:40 CDT)
  • Maxim Belkin (Mon Jul 07 2014 - 12:19:59 CDT)
• Obtain solvent-accessible surface vertices
  • John Stone (Mon May 20 2013 - 13:26:25 CDT)
  • Filip Persson (Mon May 20 2013 - 10:47:47 CDT)
• Obtaining a list of surface exposed residues
  • Bill McIntyre (Fri Oct 28 2022 - 02:36:24 CDT)
• obtaining lists of bond, angle, and dihedral interactions
  • John Stone (Mon Nov 22 2004 - 21:11:43 CST)
  • Philip Blood (Fri Nov 19 2004 - 17:21:44 CST)
• obtaining the axis of a helix
  • John Stone (Tue Aug 28 2012 - 16:13:09 CDT)
  • vitalini_at_zedat.fu-berlin.de (Wed Aug 22 2012 - 10:21:23 CDT)
• Obtaining VMD view matrices for tcl script
  • Barry Isralewitz (Wed Feb 21 2018 - 13:55:31 CST)
  • Rune Thomas Kidmose (Mon Feb 19 2018 - 01:18:59 CST)
• Occupancy maps
  • Andrei Tudor (Fri Aug 09 2013 - 11:27:25 CDT)
• Occupancy volume quantitation
  • Lizelle Lubbe (Mon Mar 19 2018 - 07:15:09 CDT)
  • Giacomo Fiorin (Mon Mar 19 2018 - 07:12:06 CDT)
  • Lizelle Lubbe (Mon Mar 19 2018 - 07:06:41 CDT)
  • Giacomo Fiorin (Mon Mar 19 2018 - 06:41:46 CDT)
  • Lizelle Lubbe (Mon Mar 19 2018 - 02:47:27 CDT)
  • Giacomo Fiorin (Fri Mar 16 2018 - 10:10:31 CDT)
  • Lizelle Lubbe (Fri Mar 16 2018 - 09:31:37 CDT)
• Oculus Rift
  • John Stone (Fri Mar 06 2015 - 08:35:53 CST)
  • Dudo (Fri Mar 06 2015 - 04:47:03 CST)
  • Christian Wohlschlager (Fri Mar 06 2015 - 04:21:55 CST)
  • Basheer Subei (Sun Nov 02 2014 - 15:26:31 CST)
  • Christian Wohlschlager (Fri Oct 31 2014 - 06:51:43 CDT)
• Oculus Rift DK2
  • Christian Wohlschlager (Fri Nov 28 2014 - 03:47:14 CST)
• Oculus Rift support in VMD?
  • John Stone (Sat Feb 22 2014 - 11:16:05 CST)
  • Mirco Wahab (Sat Feb 22 2014 - 03:40:21 CST)
• odd render problems with Vista
  • Eric H. Lee (Sun Jan 11 2009 - 20:53:13 CST)
  • Irene Newhouse (Sun Jan 11 2009 - 19:49:29 CST)
  • Irene Newhouse (Sun Jan 11 2009 - 18:20:08 CST)
  • Peter Freddolino (Sun Jan 11 2009 - 18:50:51 CST)
  • Irene Newhouse (Sun Jan 11 2009 - 18:25:25 CST)
  • Irene Newhouse (Sun Jan 11 2009 - 18:21:59 CST)
  • Peter Freddolino (Sun Jan 11 2009 - 14:49:47 CST)
  • Axel Kohlmeyer (Sun Jan 11 2009 - 14:37:10 CST)
  • Benjamin Bouvier (Sun Jan 11 2009 - 14:20:04 CST)
  • Axel Kohlmeyer (Sun Jan 11 2009 - 14:27:58 CST)
  • Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
  • Irene Newhouse (Sun Jan 11 2009 - 13:26:57 CST)
• of diet pills, like a racing heart or queasy stomach
  • ltrabuco_at_ks.uiuc.edu (Tue Jul 21 2009 - 09:47:48 CDT)
• OFF drawing method
  • Leandro Martínez (Tue May 02 2006 - 10:10:45 CDT)
  • John Stone (Tue May 02 2006 - 10:07:49 CDT)
  • Leandro Martínez (Tue May 02 2006 - 09:53:19 CDT)
• Off Topic: Small Molecule Modeling
  • Paul Daniel Jones (Wed Apr 20 2005 - 11:00:21 CDT)
• Offset for frame ids in dcd trajectory
  • John Stone (Tue May 26 2009 - 15:32:40 CDT)
  • DimitryASuplatov (Sat May 23 2009 - 11:11:09 CDT)
• OH- Drude parameters
  • Shah, Tanooj (Mon Jul 03 2023 - 17:09:42 CDT)
• OmpF biological unit
  • John Stone (Mon Mar 19 2007 - 11:29:09 CDT)
  • Adrian Kaats (Thu Mar 15 2007 - 18:58:17 CDT)
• On CHARMM angle bending potential
  • Mr Bernard Ramos (Fri Jul 15 2016 - 19:39:14 CDT)
  • Peter Freddolino (Tue Jul 05 2016 - 08:45:15 CDT)
  • Axel Kohlmeyer (Tue Jul 05 2016 - 08:37:15 CDT)
  • Peter Freddolino (Mon Jul 04 2016 - 16:09:39 CDT)
  • Mr Bernard Ramos (Sun Jul 03 2016 - 22:56:38 CDT)
• On Cremer-Pople ring puckering
  • Mr Bernard Ramos (Wed Jul 06 2011 - 14:13:05 CDT)
• On solvate plugin
  • S.K. Ghosh (Mon Jun 23 2008 - 07:22:06 CDT)
  • Bhargava (Mon Jun 23 2008 - 09:14:05 CDT)
  • S.K. Ghosh (Mon Jun 23 2008 - 07:23:00 CDT)
• On the behavior of "graphics material"
  • Norman Geist (Mon Feb 16 2015 - 05:44:43 CST)
  • Norman Geist (Mon Feb 16 2015 - 05:48:33 CST)
• One more psfgen question
  • Marc Charendoff (Thu Feb 10 2011 - 15:40:14 CST)
• One of a kind replicas
  • Richard Stone (Thu May 01 2008 - 11:18:31 CDT)
  • Erin Ziegler (Wed Apr 23 2008 - 21:53:24 CDT)
  • Jane Mayberry (Mon Apr 21 2008 - 07:16:11 CDT)
• one residue rmsd
  • John Stone (Tue May 02 2006 - 11:00:59 CDT)
  • snoze pa (Mon May 01 2006 - 17:49:02 CDT)
• One same issue happened as before in fftk
  • Win Liu (Sun Mar 31 2013 - 19:59:03 CDT)
  • Win Liu (Sun Mar 31 2013 - 16:24:38 CDT)
  • Win Liu (Sun Mar 31 2013 - 14:24:18 CDT)
  • Win Liu (Sun Mar 31 2013 - 11:37:19 CDT)
  • Win Liu (Sat Mar 30 2013 - 21:00:47 CDT)
• One Year written repl1ca w4tches warranty
  • Kari Maher (Tue Apr 24 2007 - 15:10:17 CDT)
• Ongoing problem with QwickMD plugin
  • Tiglath Moradkhan (Wed Dec 09 2020 - 12:09:04 CST)
  • John Stone (Wed Dec 09 2020 - 12:14:54 CST)
• only one model is displayed
  • John Stone (Fri Feb 11 2011 - 12:49:23 CST)
  • Joyce Tan (Fri Feb 11 2011 - 10:50:31 CST)
  • Joyce Tan (Fri Feb 11 2011 - 09:56:39 CST)
• only show some HBonds
  • Sanjeev B.S. (Sat Oct 02 2004 - 00:20:11 CDT)
  • ioana_at_pegasus.arc.nasa.gov (Fri Oct 01 2004 - 20:59:35 CDT)
• only vmd console
  • Axel Kohlmeyer (Wed Apr 13 2005 - 04:43:07 CDT)
  • Huaer XC (Tue Apr 12 2005 - 21:37:29 CDT)
  • John Stone (Mon Apr 11 2005 - 13:35:17 CDT)
  • Huaer XC (Mon Apr 11 2005 - 13:32:49 CDT)
  • John Stone (Mon Apr 11 2005 - 00:29:17 CDT)
  • John Stone (Mon Apr 11 2005 - 00:30:13 CDT)
  • Huaer XC (Sun Apr 10 2005 - 16:40:31 CDT)
  • matteo.pennestri_at_virgilio.it (Sun Apr 10 2005 - 08:43:26 CDT)
• opdating the selection during trajectory
  • Justin Gullingsrud (Mon Oct 06 2003 - 09:24:48 CDT)
  • Vlad Cojocaru (Mon Oct 06 2003 - 07:20:38 CDT)
• Open diff pdbs with diff # of atoms?
  • Axel Kohlmeyer (Sat May 14 2005 - 02:04:23 CDT)
  • Prasad S Garimella (Fri May 13 2005 - 17:02:51 CDT)
• open position in Computational Physics
  • Andrea Spitaleri (Tue Mar 08 2016 - 06:00:24 CST)
• Open VMD from a remote host
  • Gianluca Interlandi (Wed Sep 18 2013 - 15:33:38 CDT)
  • Axel Kohlmeyer (Wed Sep 18 2013 - 14:48:11 CDT)
  • John Stone (Wed Sep 18 2013 - 13:53:55 CDT)
  • Gianluca Interlandi (Wed Sep 18 2013 - 13:43:49 CDT)
• Open VMD in current terminal directory
  • Pacci Evaristo, Felipe Fabricio (Tue Dec 21 2021 - 13:10:55 CST)
  • FX (Fri Dec 17 2021 - 00:42:05 CST)
  • John Stone (Thu Dec 16 2021 - 22:52:35 CST)
  • Pacci Evaristo, Felipe Fabricio (Tue Dec 14 2021 - 16:57:13 CST)
• opendx and vmd
  • John Stone (Mon Jan 30 2006 - 14:43:39 CST)
  • Guanglei Cui (Sat Jan 28 2006 - 21:30:52 CST)
• OpenDX file format website down: What do the three values at each grid point represent
  • Ebert Maximilian (Tue Oct 06 2015 - 14:38:43 CDT)
  • Arash Azari (Tue Oct 06 2015 - 00:47:38 CDT)
  • Axel Kohlmeyer (Mon Oct 05 2015 - 10:57:17 CDT)
  • Ebert Maximilian (Mon Oct 05 2015 - 10:05:29 CDT)
  • Axel Kohlmeyer (Fri Oct 02 2015 - 13:09:36 CDT)
  • Ebert Maximilian (Fri Oct 02 2015 - 12:36:27 CDT)
• OpenGL
  • John Stone (Tue Nov 29 2016 - 17:07:16 CST)
  • spandu K (Tue Nov 29 2016 - 16:59:42 CST)
• OpenGL acceleration from eGPU?
  • John Stone (Thu Apr 18 2019 - 22:11:31 CDT)
  • Ross Gunderson (Thu Apr 18 2019 - 10:08:22 CDT)
• OpenGL cards for workstations
  • Justin Gullingsrud (Fri Jan 04 2002 - 17:05:36 CST)
• OpenGL Display
  • John Stone (Tue Nov 11 2008 - 08:05:17 CST)
  • max_at_liaad.up.pt (Tue Nov 11 2008 - 04:03:12 CST)
  • Axel Kohlmeyer (Wed Nov 14 2007 - 23:53:07 CST)
  • Christopher Stiles (Wed Nov 14 2007 - 07:14:17 CST)
  • Axel Kohlmeyer (Wed Nov 14 2007 - 04:09:40 CST)
  • Christopher Stiles (Tue Nov 13 2007 - 23:33:32 CST)
• OpenGL Display not working
  • spandu K (Tue Dec 06 2016 - 22:53:46 CST)
  • John Stone (Tue Dec 06 2016 - 22:49:00 CST)
  • spandu K (Tue Dec 06 2016 - 22:39:31 CST)
  • spandu K (Tue Dec 06 2016 - 22:02:16 CST)
  • John Stone (Tue Dec 06 2016 - 22:11:30 CST)
• OpenGL Display slow/freeze
  • Emily Chen (Tue Jun 22 2010 - 13:51:37 CDT)
  • Emily Chen (Tue Jun 22 2010 - 13:53:30 CDT)
  • Axel Kohlmeyer (Tue Jun 22 2010 - 08:45:15 CDT)
  • John Stone (Tue Jun 22 2010 - 08:54:46 CDT)
  • John Stone (Tue Jun 22 2010 - 09:00:38 CDT)
  • Yangyang Shen (Tue Jun 22 2010 - 08:34:40 CDT)
  • Yangyang Shen (Tue Jun 22 2010 - 08:09:59 CDT)
  • John Stone (Mon Jun 21 2010 - 22:43:38 CDT)
  • Axel Kohlmeyer (Mon Jun 21 2010 - 22:52:13 CDT)
  • Yangyang Shen (Mon Jun 21 2010 - 22:08:11 CDT)
• OpenGL Display transparent
  • John Stone (Tue Mar 03 2015 - 10:00:26 CST)
  • John Stone (Thu Feb 26 2015 - 15:22:50 CST)
  • jing liang (Thu Feb 19 2015 - 18:11:46 CST)
• openGL error
  • John Stone (Fri Feb 04 2005 - 14:32:28 CST)
  • John Stone (Fri Feb 04 2005 - 11:09:01 CST)
  • Florian Haberl (Fri Feb 04 2005 - 10:15:08 CST)
  • John Stone (Fri Feb 04 2005 - 09:55:38 CST)
  • vijay_at_mbu.iisc.ernet.in (Fri Feb 04 2005 - 00:46:00 CST)
• opengl libraries
  • B. Bennion (Tue Nov 27 2001 - 15:18:45 CST)
  • John Stone (Tue Nov 27 2001 - 15:04:55 CST)
  • John Stone (Mon Nov 26 2001 - 12:32:53 CST)
  • B. Bennion (Mon Nov 26 2001 - 12:23:49 CST)
• openGL library
  • Goutham (Tue Mar 31 2009 - 13:34:38 CDT)
  • Goutham (Tue Mar 31 2009 - 12:15:57 CDT)
  • John Stone (Tue Mar 31 2009 - 12:21:00 CDT)
  • John Stone (Tue Mar 31 2009 - 11:38:28 CDT)
  • John Stone (Fri Mar 27 2009 - 07:53:34 CDT)
  • Goutham (Fri Mar 27 2009 - 01:34:00 CDT)
  • Goutham (Fri Mar 27 2009 - 00:32:34 CDT)
  • John Stone (Thu Mar 26 2009 - 21:38:22 CDT)
  • Axel Kohlmeyer (Thu Mar 26 2009 - 20:20:31 CDT)
  • Goutham (Thu Mar 26 2009 - 19:48:52 CDT)
• OpenGL library loading
  • John Stone (Tue Jan 27 2004 - 16:31:56 CST)
  • Steven F. Killen (Tue Jan 27 2004 - 16:23:35 CST)
  • John Stone (Tue Jan 27 2004 - 15:20:56 CST)
  • John Stone (Tue Jan 27 2004 - 13:04:08 CST)
  • Steven F. Killen (Tue Jan 27 2004 - 11:26:51 CST)
  • John Stone (Thu Jan 22 2004 - 16:13:37 CST)
  • Steven F. Killen (Thu Jan 22 2004 - 13:34:26 CST)
• opengl not found
  • John Stone (Tue Jan 17 2006 - 10:49:40 CST)
  • Gavin Seddon (Mon Jan 16 2006 - 10:00:14 CST)
• OpenGL problem
  • John Stone (Fri May 03 2013 - 17:24:53 CDT)
  • Avisek Das (Mon Apr 29 2013 - 11:04:36 CDT)
  • John Stone (Tue Mar 06 2007 - 16:17:15 CST)
  • Rene Salmon (Tue Mar 06 2007 - 16:03:19 CST)
• OpenGL Programmable Shading not available.
  • John Stone (Fri Apr 28 2006 - 10:11:21 CDT)
  • Vlad Cojocaru (Fri Apr 28 2006 - 08:52:49 CDT)
• OpenGL Shading Program is not available
  • John Stone (Wed Feb 08 2006 - 18:04:21 CST)
  • griadi_at_utalca.cl (Fri Feb 03 2006 - 20:39:37 CST)
• OpenGL Window
  • Axel Kohlmeyer (Wed Mar 04 2009 - 07:55:24 CST)
  • Max (Wed Mar 04 2009 - 05:16:54 CST)
• OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally
  • Maria Dimitrova (Sun Jan 24 2021 - 03:20:17 CST)
  • John Stone (Sat Jan 23 2021 - 14:07:28 CST)
  • Maria Dimitrova (Fri Jan 22 2021 - 02:21:56 CST)
  • Axel Kohlmeyer (Thu Jan 21 2021 - 07:15:46 CST)
  • Maria Dimitrova (Thu Jan 21 2021 - 06:32:59 CST)
  • Maria Dimitrova (Thu Jan 21 2021 - 05:22:57 CST)
• opengl window resize hangs on linux/nvidia
  • John Stone (Tue Jun 17 2003 - 15:32:29 CDT)
  • Mikko Huhtala (Tue Jun 17 2003 - 03:01:44 CDT)
• openGL x,y position
  • John Stone (Sun Apr 22 2012 - 22:56:02 CDT)
  • Chris Harrison (Sun Apr 22 2012 - 23:00:26 CDT)
  • Axel Kohlmeyer (Sun Apr 22 2012 - 22:12:58 CDT)
  • Mayne, Christopher G (Sun Apr 22 2012 - 22:20:56 CDT)
  • Mayne, Christopher G (Sun Apr 22 2012 - 22:08:59 CDT)
  • Axel Kohlmeyer (Sun Apr 22 2012 - 21:46:14 CDT)
  • Mayne, Christopher G (Sat Apr 21 2012 - 14:01:51 CDT)
• OpenGL, rendering spheres
  • Tim Freeman (Thu Jul 20 2000 - 07:40:33 CDT)
• OpenGLExtensions.C compile problem
  • John Stone (Sun Sep 14 2003 - 14:44:31 CDT)
  • John Stone (Thu Sep 11 2003 - 10:12:19 CDT)
  • Dave Humbird (Wed Sep 10 2003 - 18:52:59 CDT)
• Opening amber files in VMD
  • John Stone (Fri Apr 08 2005 - 13:57:01 CDT)
  • Simon Whitehead (Fri Apr 08 2005 - 10:14:51 CDT)
• Opening DCD file >2GB
  • Peter Freddolino (Sun Sep 10 2006 - 15:23:31 CDT)
  • Lechuga, Javier (Sun Sep 10 2006 - 13:35:52 CDT)
• Opening file after i downloaded vmd
  • Raman Preet Singh (Thu Jul 18 2024 - 09:25:10 CDT)
  • Vermaas, Josh (Wed Jul 17 2024 - 13:38:59 CDT)
  • Diego Gomes (Wed Jul 17 2024 - 13:27:31 CDT)
  • Giacomo Fiorin (Wed Jul 17 2024 - 12:42:25 CDT)
  • Micah Watson (Wed Jul 17 2024 - 12:14:41 CDT)
  • Giacomo Fiorin (Wed Jul 17 2024 - 09:54:02 CDT)
  • Micah Watson (Tue Jul 16 2024 - 20:33:06 CDT)
• opening gromacs .gro file gives warning messsage and does not display the molecule
  • Nicolas Sapay (Tue Jun 17 2008 - 13:51:36 CDT)
  • Axel Kohlmeyer (Tue Jun 17 2008 - 09:11:03 CDT)
  • jake wernik (Mon Jun 16 2008 - 20:19:52 CDT)
• Opening GROMACS Simulation File
  • Norfarisha Mohd Fadil (Wed Jun 07 2017 - 20:04:51 CDT)
• opening VMD on OSX
  • tom keyes (Sat Jun 19 2004 - 16:30:47 CDT)
  • John Stone (Fri Jun 18 2004 - 11:08:59 CDT)
  • tom keyes (Thu Jun 17 2004 - 13:32:48 CDT)
• OpenSuSE 10.3: ppmtompeg and MovieMaker plugin
  • Dow Hurst DPHURST (Fri Dec 14 2007 - 12:14:46 CST)
• Operations with MD frames - acquiring time infromation
  • John Stone (Mon May 25 2009 - 23:44:49 CDT)
  • Peter Freddolino (Sat May 23 2009 - 09:43:28 CDT)
  • DimitryASuplatov (Sat May 23 2009 - 09:21:49 CDT)
  • Peter Freddolino (Sat May 23 2009 - 09:09:49 CDT)
  • DimitryASuplatov (Sat May 23 2009 - 08:16:37 CDT)
• OPLS force-field in NAMD
  • AnkiReddy katha (Thu May 07 2015 - 02:12:03 CDT)
• Oprah certified wieght loss solution Acai.Berri.
  • petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 19:29:14 CDT)
• Opt. Bonded: Angle in multiple rings
  • dalpizar_at_fbio.uh.cu (Fri Jun 22 2018 - 11:15:59 CDT)
  • John Stone (Fri Jun 22 2018 - 11:21:01 CDT)
• Optimal path calculation using NetworkView
  • Souvik Sinha (Mon Aug 14 2017 - 03:59:07 CDT)
• Optimization of torsion angles with fftk, large force constant
  • Mayne, Christopher G (Tue May 16 2017 - 14:07:20 CDT)
  • Mayne, Christopher G (Wed Feb 01 2017 - 14:29:33 CST)
  • ABEL Stephane (Thu Jan 26 2017 - 03:37:43 CST)
• Optimizing an inter-residue distance measurement
  • Josh Vermaas (Wed Apr 01 2015 - 15:51:35 CDT)
  • Charles McAnany (Wed Apr 01 2015 - 14:42:37 CDT)
• OptiX AO rendering
  • Mayne, Christopher G (Thu Oct 20 2016 - 10:51:00 CDT)
  • Mayne, Christopher G (Wed Oct 19 2016 - 14:39:51 CDT)
  • Parker de Waal (Wed Oct 19 2016 - 11:50:39 CDT)
• OPTIX ray tracing option not showing up
  • John Stone (Sat Dec 07 2019 - 10:53:26 CST)
  • YOGESH NARKHEDE (Fri Dec 06 2019 - 20:26:01 CST)
  • Vermaas, Joshua (Fri Dec 06 2019 - 17:57:25 CST)
  • YOGESH NARKHEDE (Fri Dec 06 2019 - 13:55:37 CST)
• optixRender error
  • John Stone (Tue Jan 27 2015 - 09:55:26 CST)
  • andrea spitaleri (Sun Jan 25 2015 - 15:45:57 CST)
  • Josh Vermaas (Fri Jan 23 2015 - 13:26:05 CST)
  • John Stone (Fri Jan 23 2015 - 13:14:15 CST)
  • Axel Kohlmeyer (Fri Jan 23 2015 - 13:00:11 CST)
  • andrea spitaleri (Fri Jan 23 2015 - 12:37:43 CST)
• OptiXRenderer) ERROR: Launch failed
  • John Stone (Thu Aug 11 2016 - 14:57:07 CDT)
  • Levi Pierce (Thu Aug 11 2016 - 14:08:23 CDT)
• ORCA Orbital Bug
  • John Stone (Tue Mar 19 2019 - 13:04:58 CDT)
  • McGuire, Kelly (Tue Mar 19 2019 - 12:43:30 CDT)
  • McGuire, Kelly (Tue Mar 19 2019 - 12:31:43 CDT)
  • McGuire, Kelly (Tue Mar 19 2019 - 12:40:34 CDT)
  • John Stone (Tue Mar 19 2019 - 12:39:43 CDT)
  • McGuire, Kelly (Sun Mar 17 2019 - 19:58:46 CDT)
  • John Stone (Sun Mar 17 2019 - 19:19:48 CDT)
  • McGuire, Kelly (Sat Mar 16 2019 - 18:34:51 CDT)
  • John Stone (Sat Mar 16 2019 - 01:13:06 CDT)
  • McGuire, Kelly (Fri Mar 15 2019 - 11:02:30 CDT)
• ORCA Plugin
  • Ernesto Aleksei Delgado Hurtado (Sun Mar 24 2019 - 11:54:16 CDT)
  • McGuire, Kelly (Sat Mar 23 2019 - 23:03:50 CDT)
• ORCA within ffTK Dihedral Angle Optimization Inquiry
  • Joel Subach (Mon Jun 19 2023 - 08:42:54 CDT)
  • Gumbart, JC (Sun Jun 11 2023 - 15:16:02 CDT)
  • Joel Subach (Sat Jun 10 2023 - 05:11:26 CDT)
• Order of atom indexes for a Fragment
  • Clement Fang Jin Koh (Mon Nov 06 2017 - 15:46:07 CST)
  • Vermaas, Joshua (Mon Nov 06 2017 - 15:49:48 CST)
  • Vermaas, Joshua (Mon Nov 06 2017 - 15:12:53 CST)
  • Vermaas, Joshua (Mon Nov 06 2017 - 14:42:45 CST)
  • Vermaas, Joshua (Mon Nov 06 2017 - 11:39:57 CST)
  • Clement Fang Jin Koh (Sun Nov 05 2017 - 22:18:22 CST)
• order of atoms in an improper dihedral
  • matziast_at_med.uth.gr (Thu Dec 02 2010 - 04:10:41 CST)
  • matziast_at_med.uth.gr (Thu Dec 02 2010 - 03:31:35 CST)
• order parameter from trajectory
  • Roman Petrenko (Fri Jul 24 2009 - 17:08:50 CDT)
• Order Parameter Script for changing bilayer normal
  • Richard Swenson (Fri Jun 01 2007 - 09:21:07 CDT)
• order parameters for long lipids
  • Raul Araya (Tue Oct 27 2009 - 08:47:38 CDT)
• orient - winVMD
  • John Stone (Sun Jan 15 2017 - 02:44:45 CST)
  • Stefano Guglielmo (Sat Jan 07 2017 - 05:33:49 CST)
• orient package problem
  • Vermaas, Joshua (Thu Jan 03 2019 - 12:32:02 CST)
  • Vermaas, Joshua (Wed Jan 02 2019 - 18:33:14 CST)
  • Prabir Khatua (Wed Jan 02 2019 - 17:15:56 CST)
• Orientation an rotation of molecules in a movie
  • John Stone (Tue Oct 12 2010 - 15:04:26 CDT)
  • Daniel Hornburg (Sat Oct 09 2010 - 07:26:21 CDT)
• orientation of hexahedrons parallelepipeds unit cells relative to x,y axes
  • Axel Kohlmeyer (Sat Jul 28 2007 - 17:24:08 CDT)
  • Èùìáò Åõáããåëéäçò (Sat Jul 28 2007 - 09:03:23 CDT)
• orientation of protein molecule
  • Axel Kohlmeyer (Wed Jan 05 2011 - 19:17:55 CST)
  • Joshua Adelman (Wed Jan 05 2011 - 19:59:46 CST)
  • prabhakar g (Wed Jan 05 2011 - 18:12:19 CST)
• Orientational correlation function
  • SHIVAM TIWARI (Mon Jun 22 2020 - 05:50:10 CDT)
• orientational correlation function for protein
  • SHIVAM TIWARI (Thu Jun 18 2020 - 06:20:10 CDT)
• Orienting a Protein
  • Kapil Amarnath (Sun Aug 14 2011 - 13:30:09 CDT)
  • Balazs Jojart (Fri Aug 12 2011 - 18:57:22 CDT)
  • Kapil Amarnath (Fri Aug 12 2011 - 11:19:31 CDT)
• orienting aquaporin in bilayer
  • Ashar Malik (Sat Jan 18 2020 - 08:37:54 CST)
  • Yogesh Sharma (Sat Jan 18 2020 - 05:53:55 CST)
• Orienting molecule along principal axes
  • Sourav Ray (Wed May 20 2015 - 07:22:56 CDT)
  • Ashar Malik (Wed May 20 2015 - 04:17:20 CDT)
  • Sourav Ray (Wed May 20 2015 - 04:21:33 CDT)
  • Sourav Ray (Wed May 20 2015 - 03:59:56 CDT)
  • Axel Kohlmeyer (Wed May 20 2015 - 03:39:57 CDT)
  • Sourav Ray (Wed May 20 2015 - 02:00:55 CDT)
• origin in VMD
  • Axel Kohlmeyer (Thu Jul 10 2014 - 15:47:34 CDT)
  • Chetan Mahajan (Thu Jul 10 2014 - 13:33:08 CDT)
  • Josh Vermaas (Thu Jul 10 2014 - 12:25:04 CDT)
  • Chetan Mahajan (Thu Jul 10 2014 - 12:18:34 CDT)
  • Josh Vermaas (Thu Jul 10 2014 - 09:58:17 CDT)
  • Chetan Mahajan (Wed Jul 09 2014 - 20:48:53 CDT)
• orthographic views and size
  • John Stone (Wed Apr 03 2002 - 09:53:30 CST)
  • Marc Baaden (Wed Apr 03 2002 - 03:43:28 CST)
• OS X Connection between VMD and AutoIMD
  • Ryan McGreevy (Fri Feb 09 2018 - 09:27:03 CST)
  • John Stone (Thu Feb 08 2018 - 16:24:26 CST)
  • De Winter Hans (Thu Feb 01 2018 - 03:17:27 CST)
• OS X intel binary problem
  • John Stone (Sun Apr 05 2009 - 09:48:59 CDT)
  • Dan Lussier (Sun Apr 05 2009 - 09:40:26 CDT)
  • Axel Kohlmeyer (Sun Apr 05 2009 - 09:48:37 CDT)
  • Axel Kohlmeyer (Sun Apr 05 2009 - 09:05:07 CDT)
  • Dan Lussier (Sun Apr 05 2009 - 03:02:20 CDT)
• OSPRay error on startup Windows11
  • Chris Taylor (Thu Aug 11 2022 - 17:26:42 CDT)
• Ospray vs Optix
  • John Stone (Fri Oct 30 2020 - 18:49:32 CDT)
  • McGuire, Kelly (Fri Oct 23 2020 - 03:27:11 CDT)
• OSX 10.6 support?
  • John Stone (Tue Aug 24 2010 - 10:45:39 CDT)
  • Steve Smith (Tue Aug 24 2010 - 10:33:48 CDT)
  • John Stone (Tue Aug 24 2010 - 10:02:20 CDT)
  • Steve Smith (Tue Aug 24 2010 - 09:39:59 CDT)
  • Joshua A. Anderson (Tue Aug 24 2010 - 07:00:36 CDT)
  • Axel Kohlmeyer (Mon Aug 23 2010 - 17:28:21 CDT)
  • Steve Smith (Mon Aug 23 2010 - 15:32:05 CDT)
• osX anti aliasing and rendering speed / window size on linux
  • John Stone (Mon Jun 16 2003 - 11:26:06 CDT)
  • John Stone (Mon Jun 16 2003 - 10:11:33 CDT)
  • Dr. Daniel James White PhD (Mon Jun 16 2003 - 04:45:54 CDT)
• OSX quad buffered stereo possible on older G5 with GeForce FX5200!
  • Dan White (Mon Mar 13 2006 - 08:17:46 CST)
• osx startup script
  • John Stone (Mon Sep 17 2007 - 15:34:55 CDT)
• Other color scales than the predefined ones
  • Berit Hinnemann (Wed Nov 26 2008 - 09:52:23 CST)
• Other color scales than the predefined ones?
  • John Stone (Thu Nov 27 2008 - 09:36:40 CST)
  • Berit Hinnemann (Thu Nov 27 2008 - 03:38:46 CST)
  • Axel Kohlmeyer (Wed Nov 26 2008 - 10:21:02 CST)
  • Berit Hinnemann (Wed Nov 26 2008 - 07:00:17 CST)
• Other glasses with CE emitters?
  • cmorton_at_medstv.unimelb.edu.au (Thu Feb 24 2005 - 17:20:58 CST)
• other-endian dcd problem also when trajectory obtained over network?
  • root (Mon Dec 29 1997 - 09:19:31 CST)
• Out of memory when loading 700 MB trajectory file
  • John Stone (Fri Sep 11 2015 - 11:35:35 CDT)
  • Benjamin Kaduk (Fri Sep 11 2015 - 11:59:13 CDT)
  • Lee-Ping Wang (Fri Sep 11 2015 - 04:35:12 CDT)
• Out of office until Nov. 16
  • John Stone (Wed Nov 07 2007 - 11:57:55 CST)
• Out of town until 3/28/2005...
  • John Stone (Fri Mar 18 2005 - 10:54:25 CST)
• Out of town until November 1
  • John Stone (Thu Oct 16 2008 - 15:53:42 CDT)
• out-of-core visualization of large trajectories
  • John Stone (Tue Jan 17 2012 - 12:19:40 CST)
  • Marc Baaden (Tue Jan 17 2012 - 12:08:31 CST)
• out-of-order writegmx with topotools 1.2
  • Axel Kohlmeyer (Mon Dec 05 2011 - 00:07:18 CST)
  • Axel Kohlmeyer (Sat Dec 03 2011 - 18:18:38 CST)
• Outdated Tutorial Files?
  • Peter Freddolino (Mon Nov 23 2020 - 08:50:56 CST)
  • Eashan C (Fri Nov 20 2020 - 23:17:00 CST)
• Outline rendering style with Tachyon
  • John Stone (Mon May 18 2009 - 14:47:33 CDT)
  • Nicolas (Tue Mar 03 2009 - 16:04:17 CST)
  • John Stone (Tue Mar 03 2009 - 14:48:32 CST)
  • Heikki Kasnanen (Tue Mar 03 2009 - 02:20:08 CST)
• output
  • John Stone (Mon Nov 15 1999 - 10:40:20 CST)
  • Deepak Singh (Sun Nov 14 1999 - 19:48:57 CST)
• output data file problem
  • 王妙郡 (Fri Apr 22 2016 - 09:34:46 CDT)
  • Axel Kohlmeyer (Tue Apr 19 2016 - 15:38:21 CDT)
  • 王妙郡 (Tue Apr 19 2016 - 15:05:35 CDT)
• output file format
  • Axel Kohlmeyer (Fri Sep 01 2006 - 15:01:50 CDT)
  • alexandra.marques_at_fc.up.pt (Fri Sep 01 2006 - 14:20:35 CDT)
  • Axel Kohlmeyer (Thu Aug 31 2006 - 10:52:13 CDT)
  • alexandra.marques_at_fc.up.pt (Thu Aug 31 2006 - 10:20:14 CDT)
• output of distances between atoms or coordinates
  • Axel Kohlmeyer (Thu Sep 20 2007 - 10:20:08 CDT)
  • INPE (Ingrid Viveka Pettersson) (Thu Sep 20 2007 - 08:27:39 CDT)
• Output of forces
  • Axel Kohlmeyer (Thu Dec 02 2010 - 04:29:05 CST)
  • Pletezhov Alexandr (Thu Dec 02 2010 - 03:18:26 CST)
• output of salt bridge plugin
  • Shyno Mathew (Mon Nov 23 2015 - 11:10:26 CST)
  • Shyno Mathew (Sun Nov 22 2015 - 22:40:44 CST)
• output of the ssrecalc command
  • jrui_at_ci.uc.pt (Sat Feb 09 2008 - 08:53:39 CST)
  • OZGE ENGIN (Sat Feb 09 2008 - 07:22:59 CST)
  • jrui_at_ci.uc.pt (Sat Feb 09 2008 - 07:03:45 CST)
  • OZGE ENGIN (Sat Feb 09 2008 - 06:39:27 CST)
  • jrui_at_ci.uc.pt (Sat Feb 09 2008 - 04:50:46 CST)
  • OZGE ENGIN (Fri Feb 08 2008 - 14:01:45 CST)
• Output of topo getbondlist to text file from VMD
  • Dhritiman Talukdar (Sat Jan 24 2015 - 09:21:04 CST)
  • Axel Kohlmeyer (Fri Jan 23 2015 - 15:05:04 CST)
  • Dhritiman Talukdar (Fri Jan 23 2015 - 14:38:50 CST)
• output secondary structure assignment into a file
  • John Stone (Thu Aug 11 2005 - 14:33:06 CDT)
  • Ting Wang (Tue Aug 09 2005 - 03:50:11 CDT)
• output values in my script
  • Axel Kohlmeyer (Thu Sep 08 2011 - 19:51:54 CDT)
  • kirtana S (Thu Sep 08 2011 - 17:38:04 CDT)
• Outputing Dihedral Indexes for key structures (backbone, alpha-helix, etc...)
  • John Stone (Wed Feb 02 2005 - 10:08:07 CST)
  • Paul R Brenner (Tue Feb 01 2005 - 21:47:38 CST)
  • Paul R Brenner (Tue Feb 01 2005 - 13:59:55 CST)
  • Jan Saam (Tue Feb 01 2005 - 00:01:29 CST)
  • Paul R Brenner (Mon Jan 31 2005 - 22:11:28 CST)
• outputing secondary structure from timeline
  • Jocelyn Rodgers (Mon Jan 23 2006 - 10:29:30 CST)
• outputing xyz coordinates of selection
  • John Stone (Mon Oct 25 2004 - 13:25:50 CDT)
  • Amarda Shehu (Sat Oct 23 2004 - 14:58:21 CDT)
• over-long bonds only in multi-frame trajectory
  • Ming-Tsung Lee (Mon Aug 01 2016 - 17:55:37 CDT)
• Overlap of volume maps in VMD
  • John Stone (Fri Dec 13 2019 - 13:15:20 CST)
  • Saumik Sen (Tue Dec 10 2019 - 06:11:29 CST)
  • Saumik Sen (Mon Dec 02 2019 - 07:42:15 CST)
  • Saumik Sen (Wed Nov 27 2019 - 14:45:34 CST)
  • John Stone (Thu Nov 21 2019 - 09:27:22 CST)
  • Saumik Sen (Thu Nov 21 2019 - 05:39:16 CST)
• overlapping two structures
  • John Stone (Mon Oct 10 2005 - 10:52:00 CDT)
  • Peter Freddolino (Fri Oct 07 2005 - 11:20:25 CDT)
  • Peter Schellenberg (Thu Oct 06 2005 - 08:37:24 CDT)
• overlay
  • Marcos Sotomayor (Thu May 31 2007 - 01:29:50 CDT)
  • Peter Freddolino (Tue May 29 2007 - 16:20:56 CDT)
  • Alison Grinthal (Tue May 29 2007 - 15:58:18 CDT)
  • Alison Grinthal (Mon May 28 2007 - 06:45:38 CDT)
• Overlaying 2 structures
  • John Stone (Fri Sep 25 2009 - 22:17:31 CDT)
  • madura_at_duq.edu (Fri Sep 25 2009 - 15:55:05 CDT)
• overlaying more than 2 molecules
  • Blake Charlebois (Wed Aug 17 2005 - 12:57:30 CDT)
  • Vlad Cojocaru (Wed Aug 17 2005 - 11:31:15 CDT)
• Overlaying multiple files in VMD
  • ankit agrawal (Mon Sep 08 2014 - 11:52:42 CDT)
  • John Stone (Mon Sep 08 2014 - 10:03:10 CDT)
  • ankit agrawal (Mon Sep 08 2014 - 00:13:59 CDT)
• Overriding default bond heuristics
  • Raman Preet Singh (Tue Oct 04 2022 - 01:48:28 CDT)
  • Josh Vermaas (Mon Oct 03 2022 - 14:36:53 CDT)
  • Axel Kohlmeyer (Mon Oct 03 2022 - 13:39:22 CDT)
  • Raman Preet Singh (Mon Oct 03 2022 - 12:50:36 CDT)
• overriding predifined types for coloring
  • sperez14_at_us.es (Wed Jul 12 2017 - 04:10:12 CDT)
• package ::struct::set not available
  • Axel Kohlmeyer (Thu Jan 26 2012 - 09:40:06 CST)
  • Ana Celia Vila Verde (Thu Jan 26 2012 - 08:36:56 CST)
• package MDEnergy
  • Axel Kohlmeyer (Tue Dec 13 2011 - 13:44:01 CST)
  • menica dibenedetto (Tue Dec 13 2011 - 12:13:02 CST)
• package psfgen: Failed to set coordinates for C3
  • Jérôme Hénin (Fri Feb 25 2011 - 08:55:47 CST)
  • Sebastian Maximilian Wilhelm (Fri Feb 25 2011 - 05:30:45 CST)
• package require help
  • sajad falsafi (Fri Aug 12 2011 - 04:05:33 CDT)
  • Axel Kohlmeyer (Fri Aug 12 2011 - 03:51:27 CDT)
  • hamze rahimi (Fri Aug 12 2011 - 01:31:22 CDT)
• package require Tcl 8.5 => ::tcl::mathfunc::
  • John Stone (Thu Aug 09 2007 - 11:04:00 CDT)
  • John Stone (Thu Aug 09 2007 - 11:01:09 CDT)
  • Philipp Schön (Thu Aug 09 2007 - 10:56:09 CDT)
• Packed with Antioxidants . Acai Berry.
  • petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 21:30:17 CDT)
• Packing periodic simulation using Pbc wrap error
  • Anthony Cruz-Balberdy (Tue Jan 26 2021 - 11:25:45 CST)
  • John Stone (Tue Jan 26 2021 - 00:37:41 CST)
  • Rakesh K (Thu Jan 14 2021 - 06:41:38 CST)
  • Rakesh K (Tue Nov 24 2020 - 12:22:26 CST)
• Pair interaction calculation for large number different pairs
  • John Stone (Thu Mar 03 2005 - 15:15:02 CST)
  • Harindar Keer (Wed Mar 02 2005 - 18:43:45 CST)
• Pair interaction calculation is not supported in CUDA version
  • Adupa Vasista (Sun Mar 15 2020 - 12:10:53 CDT)
• pairInteraction and NAMDEnergy
  • Goutham (Thu Apr 02 2009 - 11:21:27 CDT)
  • Peter Freddolino (Wed Apr 01 2009 - 22:49:26 CDT)
  • Goutham (Wed Apr 01 2009 - 22:43:23 CDT)
  • Peter Freddolino (Wed Apr 01 2009 - 20:12:19 CDT)
  • Goutham (Wed Apr 01 2009 - 17:05:52 CDT)
• Pairwise RMSD
  • Elijah Roberts (Tue Oct 07 2008 - 15:13:16 CDT)
  • John Stone (Tue Oct 07 2008 - 13:20:12 CDT)
  • Dong Xu (Fri Oct 03 2008 - 10:10:16 CDT)
• pairwise rmsds in rmsdtt cvs1.9
  • Luis Gracia (Wed Apr 06 2005 - 16:15:48 CDT)
• panel missing!
  • Axel Kohlmeyer (Thu May 17 2012 - 10:16:40 CDT)
  • Reza Khalkhali (Thu May 17 2012 - 03:51:38 CDT)
  • Axel Kohlmeyer (Wed May 16 2012 - 12:23:18 CDT)
  • Reza Khalkhali (Wed May 16 2012 - 10:49:51 CDT)
• Paper request : Assembly and Analysis of Cell-Scale Membrane Envelopes
  • Georcki Ropon (Mon Dec 06 2021 - 15:40:55 CST)
• Parallel analysis using dynamic atom selections
  • Patrick Charchar (Tue Jul 26 2016 - 23:01:01 CDT)
• parallel capabilities
  • John Stone (Tue Jun 26 2007 - 18:06:07 CDT)
  • Axel Kohlmeyer (Tue Jun 26 2007 - 16:24:22 CDT)
  • Jana Black (Tue Jun 26 2007 - 14:27:38 CDT)
  • Axel Kohlmeyer (Tue Jun 26 2007 - 14:14:27 CDT)
  • L. Michel Espinoza-Fonseca (Tue Jun 26 2007 - 15:16:58 CDT)
  • John Stone (Tue Jun 26 2007 - 14:56:29 CDT)
• parallel processing in vmd
  • Christopher Neale (Thu Sep 14 2017 - 22:34:52 CDT)
  • John Stone (Thu Sep 14 2017 - 21:35:59 CDT)
  • Monika Madhavi (Thu Sep 14 2017 - 20:20:43 CDT)
• parallel rendering across clusters?
  • John Stone (Fri Sep 15 2000 - 18:18:53 CDT)
  • John Duff (Fri Sep 15 2000 - 16:16:16 CDT)
• Parallel rendering example from tutorial, "VMD parallel commands"
  • Chris Taylor (Fri May 06 2022 - 20:07:16 CDT)
  • John Stone (Fri May 06 2022 - 00:36:13 CDT)
  • John Stone (Wed May 04 2022 - 23:16:21 CDT)
  • Chris Taylor (Wed May 04 2022 - 22:46:28 CDT)
  • John Stone (Wed May 04 2022 - 15:11:39 CDT)
  • Chris Taylor (Mon May 02 2022 - 21:49:45 CDT)
• parallel VMD
  • John Stone (Tue Sep 16 2008 - 13:35:03 CDT)
  • Benjamin Stauch (Tue Sep 16 2008 - 07:47:16 CDT)
• Parallelization to an axis
  • Sandip Mondal (Mon Mar 26 2018 - 01:26:23 CDT)
  • Christian Leitold (Sat Mar 24 2018 - 00:56:46 CDT)
  • Sandip Mondal (Sat Mar 24 2018 - 00:04:49 CDT)
  • Christian Leitold (Fri Mar 23 2018 - 14:17:58 CDT)
  • Sandip Mondal (Fri Mar 23 2018 - 12:42:45 CDT)
  • Sandip Mondal (Fri Mar 23 2018 - 12:44:13 CDT)
  • Vermaas, Joshua (Fri Mar 23 2018 - 12:26:59 CDT)
  • Axel Kohlmeyer (Fri Mar 23 2018 - 09:57:52 CDT)
  • Sandip Mondal (Fri Mar 23 2018 - 09:31:48 CDT)
• Parameter
  • snoze pa (Fri Jul 20 2007 - 12:03:12 CDT)
• Parameter and topology
  • Suresh Ghimire (Wed Jan 17 2018 - 23:59:37 CST)
• Parameter and Topology File UPDATE.
  • Maxim Belkin (Sat Aug 16 2014 - 04:29:29 CDT)
  • Maxim Belkin (Sat Aug 16 2014 - 03:33:34 CDT)
  • Maxim Belkin (Sat Aug 16 2014 - 02:13:03 CDT)
  • Ashar Malik (Fri Aug 15 2014 - 21:23:48 CDT)
• parameter file for CHARMM
  • matziast_at_med.uth.gr (Tue May 25 2010 - 16:03:33 CDT)
• parameter file for DAD
  • Yu Wang (Fri Apr 07 2006 - 09:18:55 CDT)
• parameter file for dUTP
  • sunyeping (Thu May 30 2019 - 08:03:03 CDT)
• Parameter file for protein siloxane interactions
  • Nilesh Ingle (Thu Oct 08 2009 - 21:47:14 CDT)
• parameter files
  • Peter Freddolino (Tue Mar 28 2006 - 14:31:59 CST)
  • lily jin (Tue Mar 28 2006 - 14:13:39 CST)
• parameter tool tutorial
  • Jan Saam (Thu Dec 20 2007 - 17:50:00 CST)
  • snoze pa (Thu Dec 20 2007 - 17:15:15 CST)
• Parameter-Topology-Repository
  • Jan Saam (Wed Nov 19 2003 - 11:56:41 CST)
• Parameter/topology repository
  • Mike McCallum (Fri Nov 07 2003 - 10:45:16 CST)
  • Jan Saam (Fri Nov 07 2003 - 06:05:15 CST)
• Parameterization strategy with fragmentation in fftk
  • Vermaas, Joshua (Wed Sep 25 2019 - 09:38:35 CDT)
  • Per Larsson (Wed Sep 25 2019 - 02:21:09 CDT)
  • Gumbart, JC (Sun Sep 22 2019 - 17:04:28 CDT)
  • Per Larsson (Fri Sep 20 2019 - 04:31:50 CDT)
  • Vermaas, Joshua (Thu Sep 19 2019 - 11:50:39 CDT)
  • Per Larsson (Thu Sep 19 2019 - 06:14:37 CDT)
• parameterization tool
  • sajad falsafi (Thu Jun 09 2011 - 11:40:57 CDT)
  • Bennion, Brian (Thu Jun 09 2011 - 11:52:29 CDT)
  • Bennion, Brian (Wed Jun 08 2011 - 16:14:31 CDT)
• parameterizing a peptide with a methylated backbone nitrogen
  • SHIVAM TIWARI (Thu Mar 25 2021 - 04:28:36 CDT)
• parameters file of POPC
  • Axel Kohlmeyer (Mon Jun 04 2007 - 09:17:02 CDT)
  • SMAHANE CHALABI (Mon Jun 04 2007 - 09:22:30 CDT)
• Parameters for HS(CH2)11NH2
  • Seth Axen (Sat May 21 2016 - 00:02:24 CDT)
  • Natnael Doilicho (Fri May 20 2016 - 19:07:28 CDT)
• parameters for PE100 chain?
  • Mayne, Christopher G (Wed Apr 10 2013 - 12:36:23 CDT)
  • Bennion, Brian (Wed Apr 10 2013 - 11:56:31 CDT)
  • kerexen_at_gmail.com (Wed Apr 10 2013 - 10:41:22 CDT)
• Parametrization of hydrogen sulfide
  • Raul Araya (Fri Jul 18 2008 - 17:54:45 CDT)
• Parametrization of sulfur-containing compound with ffTK
  • Trollmann, Marius (Thu Nov 10 2022 - 10:36:32 CST)
• paratool
  • Mayne, Christopher G (Tue Aug 25 2015 - 19:30:52 CDT)
  • Mayne, Christopher G (Tue Aug 25 2015 - 09:48:08 CDT)
  • Mayne, Christopher G (Tue Aug 18 2015 - 15:58:35 CDT)
  • Prof. Eddie (Tue Aug 18 2015 - 13:09:22 CDT)
  • John Stone (Mon Aug 17 2015 - 23:09:35 CDT)
  • Prof. Eddie (Mon Aug 17 2015 - 14:52:20 CDT)
  • Axel Kohlmeyer (Sun Feb 20 2011 - 12:25:46 CST)
  • alamng_at_uci.edu (Sat Feb 19 2011 - 15:43:36 CST)
  • doan dung (Sun Aug 29 2010 - 10:04:29 CDT)
• paratool - parameter generation from gaussian log files
  • sarah k (Mon Dec 14 2009 - 23:37:02 CST)
  • Yu Fang (Mon Dec 14 2009 - 17:41:06 CST)
  • Yu Fang (Mon Dec 14 2009 - 05:40:47 CST)
  • sarah k (Fri Dec 11 2009 - 01:32:10 CST)
  • Yu Fang (Thu Dec 10 2009 - 05:08:03 CST)
  • sarah k (Thu Dec 10 2009 - 00:07:06 CST)
  • Yu Fang (Wed Dec 09 2009 - 22:17:57 CST)
• paratool ?
  • John Stone (Fri May 26 2006 - 21:16:21 CDT)
  • Monique Laberge (Fri May 26 2006 - 19:19:35 CDT)
• Paratool Add/Edit Internal Coordinates window
  • Francesco Pietra (Tue Jun 12 2007 - 00:29:05 CDT)
• paratool and fatal error
  • sarah k (Tue Nov 10 2009 - 23:27:33 CST)
• paratool and g09
  • Mayne, Christopher G (Thu May 16 2013 - 09:21:57 CDT)
  • Prof. Eddie (Wed May 15 2013 - 16:13:29 CDT)
• paratool CHARMM style charges
  • Jeffrey Potoff (Tue Dec 27 2011 - 13:55:04 CST)
  • Axel Kohlmeyer (Tue Dec 27 2011 - 09:46:32 CST)
  • Adrian Jasiñski (Tue Dec 27 2011 - 08:24:49 CST)
• paratool dont recognize gaussian output
  • angel_at_cbuc.cl (Fri Dec 12 2008 - 10:10:13 CST)
• paratool error
  • Goutham (Tue Aug 31 2010 - 20:02:30 CDT)
• Paratool in VMD
  • Syed Tarique Moin (Tue Dec 04 2007 - 05:18:08 CST)
• paratool problem
  • sarah k (Wed Nov 18 2009 - 23:43:52 CST)
  • daniel aguayo (Mon Nov 27 2006 - 21:44:22 CST)
  • Jan Saam (Mon Nov 20 2006 - 19:31:45 CST)
  • daniel aguayo (Mon Nov 20 2006 - 19:03:17 CST)
  • John Stone (Mon Nov 20 2006 - 13:45:11 CST)
  • John Stone (Wed Nov 15 2006 - 15:54:55 CST)
  • daniel aguayo (Wed Nov 15 2006 - 13:29:58 CST)
  • Jan Saam (Thu Sep 21 2006 - 17:21:29 CDT)
  • Darrell Kuykendall (Thu Sep 21 2006 - 10:55:20 CDT)
  • Axel Kohlmeyer (Thu Sep 21 2006 - 14:42:15 CDT)
  • Jan Saam (Thu Sep 21 2006 - 14:24:58 CDT)
  • Darrell Kuykendall (Thu Sep 21 2006 - 13:50:01 CDT)
  • Jan Saam (Thu Aug 31 2006 - 04:02:13 CDT)
  • daniel aguayo (Wed Aug 30 2006 - 18:35:36 CDT)
• paratool questions
  • Lisa Brown (Tue Mar 31 2009 - 15:25:00 CDT)
• Paratool Tutorial
  • Jacqueline Cawthray (Tue Dec 14 2010 - 14:01:59 CST)
• paratool tutorial/ complete user guide
  • Lisa Brown (Mon Mar 16 2009 - 14:43:49 CDT)
• Paratool Window
  • L. Michel Espinoza-Fonseca (Mon Jun 11 2007 - 14:52:14 CDT)
  • Jan Saam (Mon Jun 11 2007 - 14:22:00 CDT)
  • Vivek Sharma (Mon Jun 11 2007 - 08:48:07 CDT)
• Paratool Window)
  • Jan Saam (Mon Aug 27 2007 - 03:56:34 CDT)
  • Francesco Pietra (Tue Aug 21 2007 - 10:29:41 CDT)
  • Peter Freddolino (Tue Aug 21 2007 - 10:01:04 CDT)
  • Jacob Poehlsgaard (Tue Aug 21 2007 - 06:18:40 CDT)
  • Jan Saam (Fri Jun 15 2007 - 11:11:10 CDT)
• paratool/forcefield tool error
  • Mayne, Christopher G (Tue Dec 02 2014 - 14:24:51 CST)
  • Kshatresh Dutta Dubey (Mon Dec 01 2014 - 08:16:07 CST)
• paratool/gaff
  • Jan Saam (Fri Jun 15 2007 - 10:04:37 CDT)
  • Francesco Pietra (Thu Jun 14 2007 - 01:45:23 CDT)
  • Jan Saam (Tue Jun 12 2007 - 11:35:09 CDT)
  • Francesco Pietra (Wed Jun 06 2007 - 10:07:13 CDT)
  • Francesco Pietra (Thu May 24 2007 - 02:48:06 CDT)
  • Jan Saam (Thu May 24 2007 - 02:26:44 CDT)
  • Francesco Pietra (Thu May 24 2007 - 01:14:37 CDT)
• paratool/gaff -- Forgotten attachment
  • Jan Saam (Tue Jun 12 2007 - 11:36:46 CDT)
• paratool: gaussian output error
  • Falgun Shah (Sat Feb 28 2009 - 17:15:25 CST)
• Paratool: QMTool::bondlist error message
  • Sebastian Stolzenberg (Fri Sep 25 2009 - 21:53:27 CDT)
  • John Stone (Fri Sep 25 2009 - 22:09:51 CDT)
• paratool: unable to load optimized geometry
  • JC Gumbart (Mon Oct 19 2009 - 12:15:56 CDT)
  • Axel Kohlmeyer (Mon Oct 19 2009 - 08:51:46 CDT)
  • Stanislaw Bobritsky (Mon Oct 19 2009 - 03:21:33 CDT)
• Paratool:Problems to load Hessian for charge distribution
  • saam (Sat May 09 2009 - 08:06:00 CDT)
  • Sabine Leroch (Fri May 08 2009 - 11:12:05 CDT)
• Paratool`s error reading single point calculation.
  • Ranyere Deyler (Fri Feb 25 2011 - 13:24:42 CST)
• Paratools
  • Syed Tarique Moin (Tue Nov 27 2007 - 03:06:27 CST)
• paratools charmm partial charges
  • Corey Fugate (Mon May 03 2010 - 13:42:02 CDT)
  • Axel Kohlmeyer (Fri Apr 30 2010 - 08:38:27 CDT)
  • Corey Fugate (Thu Apr 29 2010 - 23:30:19 CDT)
• Paratools problem with Gaussian Output
  • Jan Saam (Tue Mar 11 2008 - 05:40:06 CDT)
  • Nicolas Floquet (Tue Mar 11 2008 - 02:39:05 CDT)
• Paratools Question
  • Corey Fugate (Thu Apr 29 2010 - 01:35:23 CDT)
  • Axel Kohlmeyer (Wed Apr 28 2010 - 23:47:45 CDT)
  • Corey Fugate (Wed Apr 28 2010 - 23:17:39 CDT)
• parent molecule
  • Joshua Adelman (Wed Nov 18 2009 - 11:43:00 CST)
  • Joshua Adelman (Sun Nov 15 2009 - 07:06:58 CST)
  • Joshua Adelman (Sat Nov 14 2009 - 07:47:23 CST)
  • sarah k (Fri Nov 13 2009 - 23:59:28 CST)
• parm7 plugin
  • Guanglei Cui (Wed Jan 26 2005 - 11:06:21 CST)
  • Florian Haberl (Wed Jan 26 2005 - 10:27:24 CST)
  • John Stone (Wed Jan 26 2005 - 10:12:00 CST)
  • Guanglei Cui (Wed Jan 26 2005 - 10:00:13 CST)
• Parse Fep plugin error
  • Joseph Antoine Garate (Fri Dec 23 2011 - 08:27:39 CST)
• parseFEP and solvate pulgins in VMD 1.9.3
  • Gianluca Interlandi (Mon Feb 05 2024 - 19:33:47 CST)
  • Vermaas, Josh (Mon Feb 05 2024 - 19:27:14 CST)
  • Gianluca Interlandi (Mon Feb 05 2024 - 15:30:55 CST)
  • Josh (Mon Feb 05 2024 - 14:54:25 CST)
  • Gianluca Interlandi (Mon Feb 05 2024 - 12:58:01 CST)
• parseFEP domain error
  • Francesco Pietra (Fri Mar 02 2018 - 09:47:42 CST)
• ParseFEP Error
  • Foster, Clay A. (Thu Jul 31 2014 - 17:44:45 CDT)
• ParseFEP error with FEP in segments at different lambda schedule
  • Francesco Pietra (Sun Apr 08 2018 - 08:46:35 CDT)
• ParseFEP for restating FEP
  • Francesco Pietra (Fri Mar 23 2018 - 02:05:41 CDT)
• ParseFEP in text mode
  • Gianluca Interlandi (Mon Oct 27 2014 - 21:19:54 CDT)
• ParseFEP plugin error
  • John Stone (Tue Feb 26 2013 - 13:14:18 CST)
  • Bernandie Jean (Tue Feb 26 2013 - 12:11:13 CST)
• ParseFEP_domain error
  • Ada Zhan (Tue Apr 26 2011 - 15:02:24 CDT)
  • John Stone (Tue Apr 26 2011 - 10:50:18 CDT)
  • Ada Zhan (Fri Apr 22 2011 - 14:50:57 CDT)
• Parsing error in TkConsole
  • Vermaas, Joshua (Wed Jan 02 2019 - 15:17:33 CST)
  • Ashar Malik (Wed Jan 02 2019 - 15:14:44 CST)
  • Seibold, Steve Allan (Wed Jan 02 2019 - 15:03:47 CST)
  • João Ribeiro (Wed Jan 02 2019 - 14:46:56 CST)
  • Seibold, Steve Allan (Wed Jan 02 2019 - 13:44:08 CST)
• Parsing exit code from TCL script to bash bypassing VMD
  • GIUSEPPE LEONARDO LICARI (Tue May 10 2022 - 03:59:03 CDT)
  • Axel Kohlmeyer (Mon May 09 2022 - 09:17:29 CDT)
  • GIUSEPPE LEONARDO LICARI (Mon May 09 2022 - 08:20:59 CDT)
• Part of my molecule isn't rendering in New Cartoon
  • Trifan, Anda (Sun Sep 25 2022 - 09:03:02 CDT)
  • Vermaas, Josh (Sat Sep 24 2022 - 12:25:01 CDT)
  • Nick Bayhi (Fri Sep 23 2022 - 16:22:49 CDT)
• Partial rendering of periodic cells`
  • Dallas Warren (Wed May 15 2019 - 18:23:57 CDT)
  • Vermaas, Joshua (Wed May 15 2019 - 17:17:20 CDT)
  • Nick Palmer (Wed May 15 2019 - 16:14:07 CDT)
• partially loading all dcd files using animatedcds X_ChangeProperty: BadValue
  • Ryan Woltz (Fri Oct 22 2021 - 14:41:40 CDT)
  • John Stone (Mon Oct 18 2021 - 12:13:47 CDT)
  • Ryan Woltz (Sun Oct 10 2021 - 10:27:00 CDT)
• particular set of xyz coordinates in PDB causes seg fault
  • Daniel Farrell (Tue Jun 15 2010 - 15:35:50 CDT)
  • Axel Kohlmeyer (Tue Jun 15 2010 - 15:02:45 CDT)
  • Daniel Farrell (Tue Jun 15 2010 - 13:59:50 CDT)
  • Axel Kohlmeyer (Tue Jun 15 2010 - 12:56:50 CDT)
  • Daniel Farrell (Tue Jun 15 2010 - 12:16:58 CDT)
• pass variables from the shell to VMD
  • dimka (Thu Sep 07 2006 - 12:09:32 CDT)
  • Axel Kohlmeyer (Thu Sep 07 2006 - 11:51:01 CDT)
  • Christian Fufezan (Thu Sep 07 2006 - 10:54:05 CDT)
• passing arguments to a vmd script which is executed using play or source
  • Axel Kohlmeyer (Mon Feb 23 2009 - 10:20:55 CST)
  • Axel Kohlmeyer (Mon Feb 23 2009 - 09:15:44 CST)
  • maria goranovic (Mon Feb 23 2009 - 09:19:24 CST)
  • Axel Kohlmeyer (Mon Feb 23 2009 - 09:08:58 CST)
  • mariagoranovic_at_gmail.com (Mon Feb 23 2009 - 04:24:14 CST)
• passing parameters to a tcl script
  • Justin Gullingsrud (Sat Oct 01 2005 - 15:26:00 CDT)
  • Samuel Flores (Sat Oct 01 2005 - 11:42:51 CDT)
• passive stereo projection using a Mac
  • Jeff Hoch (Tue Sep 18 2007 - 12:18:15 CDT)
• passive stereo setup on linux
  • John Stone (Thu Mar 04 2004 - 13:11:00 CST)
  • Joe Zhou (Thu Mar 04 2004 - 12:55:31 CST)
  • John Stone (Wed Mar 03 2004 - 14:50:20 CST)
  • Joe Zhou (Wed Mar 03 2004 - 14:47:53 CST)
  • John Stone (Tue Mar 02 2004 - 12:48:17 CST)
  • Joe Zhou (Tue Mar 02 2004 - 12:28:17 CST)
  • John Stone (Mon Mar 01 2004 - 18:53:27 CST)
  • John Stone (Mon Mar 01 2004 - 18:54:17 CST)
  • Joe Zhou (Mon Mar 01 2004 - 16:18:06 CST)
• patch CT3 and ACE problems in PSFGEN
  • JC Gumbart (Fri Oct 08 2010 - 19:25:12 CDT)
  • Markus K. Dahlgren (Fri Oct 08 2010 - 11:32:02 CDT)
  • JC Gumbart (Thu Oct 07 2010 - 19:01:15 CDT)
  • Markus K. Dahlgren (Thu Oct 07 2010 - 15:11:52 CDT)
• Patch DISU fails for MARTINIZED protein segments
  • Peter Freddolino (Tue Dec 04 2018 - 14:06:47 CST)
  • Manish Agarwal (Tue Dec 04 2018 - 12:55:30 CST)
  • Peter Freddolino (Tue Dec 04 2018 - 12:54:13 CST)
  • Manish Agarwal (Tue Dec 04 2018 - 10:54:14 CST)
  • Peter Freddolino (Tue Dec 04 2018 - 07:22:26 CST)
  • Manish Agarwal (Tue Dec 04 2018 - 01:45:08 CST)
• Patch for deoxy and dideoxy nucleotides
  • Stefan Franzen (Mon Feb 13 2012 - 09:31:12 CST)
• Patch for Three or More monomers
  • Axel Kohlmeyer (Fri Mar 12 2010 - 11:32:10 CST)
  • muniyamuthu.raviprasad_at_ndsu.edu (Fri Mar 12 2010 - 10:41:03 CST)
• patch in psfgen - ionic interaction and hydrogen bond
  • Jim Phillips (Mon Jan 26 2004 - 17:41:55 CST)
  • Han Choe (Sun Jan 25 2004 - 20:42:50 CST)
• patch SAM in psfgen
  • flavio seixas (Sat Jun 23 2012 - 14:13:14 CDT)
  • JC Gumbart (Fri Jun 22 2012 - 23:35:14 CDT)
  • flavio seixas (Fri Jun 22 2012 - 09:37:17 CDT)
• Patch to connect monomers code
  • Rawan Al Nsour (Sun May 04 2014 - 12:15:12 CDT)
• Patching for bond between protein and organic ligand
  • Gumbart, James C (Tue Nov 13 2018 - 19:54:19 CST)
  • Brian Radak (Tue Nov 13 2018 - 08:37:37 CST)
  • Francesco Pietra (Tue Nov 13 2018 - 01:13:54 CST)
  • Brian Radak (Mon Nov 12 2018 - 12:19:08 CST)
  • Vermaas, Joshua (Mon Nov 12 2018 - 11:28:21 CST)
  • Francesco Pietra (Mon Nov 12 2018 - 01:50:29 CST)
• Patching Glu/N-terminus peptide bond type bond
  • Tristan Croll (Thu Nov 17 2011 - 01:02:52 CST)
  • Joaim Swedberg (Wed Nov 16 2011 - 17:41:38 CST)
• patching of sucrose
  • Akash Mondal (Sat Sep 03 2022 - 01:37:41 CDT)
  • Akash Mondal (Sat Sep 03 2022 - 01:14:51 CDT)
• patching residues
  • Lara rajam (Thu Feb 09 2017 - 16:42:11 CST)
  • Giacomo Fiorin (Thu Feb 09 2017 - 16:13:02 CST)
  • Lara rajam (Thu Feb 09 2017 - 15:07:11 CST)
• Patchlet for MacOS 32/64-bit compilation
  • FX (Sat Jul 02 2011 - 05:13:21 CDT)
• Pause script, make display interactive, then resume script after user input
  • John Stone (Wed Jan 23 2019 - 23:45:27 CST)
  • John Stone (Fri Jan 18 2019 - 16:44:29 CST)
  • Patrick Charchar (Wed Jan 16 2019 - 19:59:54 CST)
• PBC
  • Olaf Lenz (Mon Jan 14 2008 - 03:51:10 CST)
  • Nazanin Samadi (Thu Jan 10 2008 - 07:19:20 CST)
  • John Stone (Tue Jan 06 2004 - 18:27:10 CST)
  • John Stone (Tue Jan 06 2004 - 18:25:44 CST)
  • Axel Kohlmeyer (Tue Jan 06 2004 - 16:49:44 CST)
  • Mauricio C. Tripp (Tue Jan 06 2004 - 13:32:31 CST)
  • Axel Kohlmeyer (Tue Jan 06 2004 - 12:19:50 CST)
  • Mauricio C. Tripp (Tue Jan 06 2004 - 10:25:51 CST)
• PBC & Solvate Tool in VMD
  • Sharlene Denos (Wed Feb 16 2011 - 08:37:30 CST)
  • JC Gumbart (Wed Feb 16 2011 - 07:49:41 CST)
  • Ajasja LjubetiÄ� (Wed Feb 16 2011 - 03:20:25 CST)
  • Sharlene Denos (Wed Feb 16 2011 - 00:03:36 CST)
• PBC + DCD wrap/unwrap
  • Olaf Lenz (Tue Dec 15 2009 - 03:38:55 CST)
  • Goutham (Mon Dec 14 2009 - 13:37:36 CST)
• PBC - setting box size
  • John Stone (Thu Mar 20 2003 - 21:58:52 CST)
  • Dallas Warren (Thu Mar 20 2003 - 20:43:35 CST)
• PBC and H-bond detection
  • Eduard Schreiner (Fri Dec 09 2005 - 04:41:10 CST)
  • Jérôme Hénin (Fri Dec 09 2005 - 02:23:36 CST)
  • Mgr. Lubos Vrbka (Fri Dec 09 2005 - 01:51:37 CST)
  • Mgr. Lubos Vrbka (Fri Dec 09 2005 - 01:32:31 CST)
  • Marc Q. Ma (Thu Dec 08 2005 - 15:43:28 CST)
  • Jérôme Hénin (Thu Dec 08 2005 - 14:21:17 CST)
  • John Stone (Thu Dec 08 2005 - 13:40:13 CST)
  • Jérôme Hénin (Thu Dec 08 2005 - 09:03:57 CST)
• pbc and measure hbond
  • John Stone (Thu Apr 22 2010 - 10:30:17 CDT)
  • Dong Luo (Wed Apr 21 2010 - 10:38:30 CDT)
  • yongpingzeng (Wed Apr 21 2010 - 08:33:43 CDT)
  • yongpingzeng (Tue Apr 20 2010 - 23:16:04 CDT)
  • Nicholas Musolino (Tue Apr 20 2010 - 11:27:39 CDT)
  • yongpingzeng (Tue Apr 20 2010 - 10:07:29 CDT)
  • yongpingzeng (Tue Apr 20 2010 - 10:11:38 CDT)
• pbc and vmd
  • L. Michel Espinoza-Fonseca (Tue Mar 07 2006 - 10:28:34 CST)
  • John Stone (Tue Mar 07 2006 - 10:05:19 CST)
  • Axel Kohlmeyer (Tue Mar 07 2006 - 09:55:27 CST)
  • L. Michel Espinoza-Fonseca (Tue Mar 07 2006 - 10:01:14 CST)
  • L. Michel Espinoza-Fonseca (Tue Mar 07 2006 - 07:11:21 CST)
  • John Stone (Mon Mar 06 2006 - 19:20:18 CST)
  • Nicolas Sapay (Mon Mar 06 2006 - 10:52:23 CST)
  • Axel Kohlmeyer (Mon Mar 06 2006 - 01:01:20 CST)
  • griadi_at_utalca.cl (Mon Mar 06 2006 - 09:23:09 CST)
  • L. Michel Espinoza-Fonseca (Sun Mar 05 2006 - 18:06:50 CST)
• PBC atom selection and contacts
  • John Stone (Thu Feb 17 2005 - 14:29:25 CST)
  • Mgr. Lubos Vrbka (Wed Feb 16 2005 - 09:32:53 CST)
  • John Stone (Mon Feb 14 2005 - 11:29:42 CST)
  • Mgr. Lubos Vrbka (Mon Feb 14 2005 - 10:29:45 CST)
  • Lubos Vrbka (Thu Feb 10 2005 - 03:13:44 CST)
• Pbc box on, default
  • Dallas Warren (Wed Feb 03 2021 - 16:51:51 CST)
  • Axel Kohlmeyer (Wed Feb 03 2021 - 13:07:03 CST)
  • Henrik Hariman (Wed Feb 03 2021 - 12:42:28 CST)
• pbc box problem
  • Axel Kohlmeyer (Thu Nov 15 2012 - 02:45:25 CST)
  • Albert (Thu Nov 15 2012 - 01:37:27 CST)
• pbc get -all fails
  • Ronald Cohen (Tue Jul 16 2024 - 09:04:29 CDT)
  • Ronald Cohen (Tue Jul 16 2024 - 08:47:25 CDT)
• pbc in water count
  • Agarwal, Silvi (Sat Mar 06 2010 - 11:52:55 CST)
  • Olaf Lenz (Fri Mar 05 2010 - 01:06:46 CST)
  • Agarwal, Silvi (Thu Mar 04 2010 - 12:07:37 CST)
• PBC issue
  • Vermaas, Josh (Tue Jul 16 2024 - 06:18:47 CDT)
  • Aditi Gotkhindikar (Tue Jul 16 2024 - 03:22:20 CDT)
• pbc join
  • Olaf Lenz (Tue Sep 02 2008 - 14:14:17 CDT)
  • Edward Lyman (Tue Sep 02 2008 - 13:34:46 CDT)
  • Olaf Lenz (Mon Mar 10 2008 - 01:49:46 CDT)
  • Axel Kohlmeyer (Sun Mar 09 2008 - 23:57:35 CDT)
  • Dongsheng Zhang (Sun Mar 09 2008 - 22:44:32 CDT)
• pbc join bondlist
  • Jacob Gissinger (Thu Jul 30 2015 - 16:01:23 CDT)
• PBC missed in Amber MD
  • Axel Kohlmeyer (Thu May 10 2012 - 13:43:31 CDT)
  • Axel Kohlmeyer (Thu May 10 2012 - 09:05:04 CDT)
  • Albert (Thu May 10 2012 - 02:53:00 CDT)
• PBC Option With Solvate Tool
  • Sharlene Denos (Tue Feb 15 2011 - 23:31:00 CST)
• PBC Plugin
  • Kevin C Chan (Thu Mar 12 2015 - 04:22:55 CDT)
  • Norman Geist (Thu Mar 12 2015 - 02:27:03 CDT)
  • Kevin C Chan (Wed Mar 11 2015 - 12:44:41 CDT)
  • Josh Vermaas (Wed Mar 11 2015 - 11:07:36 CDT)
  • Kevin C Chan (Wed Mar 11 2015 - 10:09:09 CDT)
• PBC problem in gofr
  • Axel Kohlmeyer (Mon Jul 30 2007 - 08:57:10 CDT)
  • sfrickenhaus (Mon Jul 30 2007 - 04:53:40 CDT)
• PBC Shift Center
  • Mcguire, Kelly (Sun Mar 07 2021 - 14:31:30 CST)
• pbc to keep membrane in center
  • Deng, Jinxia (Nancy) (Tue Mar 01 2016 - 09:03:27 CST)
• PBC tool does not read center from a xsc
  • Axel Kohlmeyer (Thu Jun 25 2015 - 12:41:36 CDT)
  • Kevin C Chan (Thu Jun 25 2015 - 11:42:00 CDT)
• pbc tools
  • Jacob Gissinger (Mon Jun 22 2015 - 11:20:28 CDT)
• PBC unwrap a membrane
  • Kevin C Chan (Sun Jun 21 2015 - 03:55:15 CDT)
  • Kevin C Chan (Sun Jun 21 2015 - 02:56:21 CDT)
• pbc unwrap doesn't work
  • sunyeping (Sun Jan 08 2017 - 07:44:14 CST)
• pbc unwrap not complete
  • Nicola Giacche' (Tue May 24 2011 - 09:42:19 CDT)
  • Olaf Lenz (Mon May 23 2011 - 04:57:38 CDT)
  • Nicola Giacche' (Fri May 20 2011 - 08:05:40 CDT)
• pbc wrap
  • Hitesh Patel (Mon Nov 14 2011 - 11:09:41 CST)
  • Hitesh Patel (Mon Nov 14 2011 - 10:17:12 CST)
  • Olaf Lenz (Mon Nov 14 2011 - 09:57:04 CST)
  • Axel Kohlmeyer (Mon Nov 14 2011 - 09:57:06 CST)
  • Hitesh Patel (Mon Nov 14 2011 - 08:48:42 CST)
  • Olaf Lenz (Mon May 16 2011 - 03:14:25 CDT)
  • cnu gromacs (Fri May 13 2011 - 13:50:30 CDT)
  • Olaf Lenz (Tue Jun 01 2010 - 05:23:05 CDT)
  • Salvador H-V (Thu May 27 2010 - 17:35:54 CDT)
• pbc wrap + within VS pbwithin
  • Hemanth Vemuri (Wed Jun 21 2017 - 14:08:08 CDT)
• pbc wrap -center com
  • Olaf Lenz (Sun May 25 2014 - 06:04:35 CDT)
  • Olaf Lenz (Thu May 22 2014 - 05:45:00 CDT)
  • Norman Geist (Thu May 22 2014 - 04:43:39 CDT)
• pbc wrap center on protein
  • Luca Bellucci (Sat Dec 19 2009 - 16:06:12 CST)
  • Balazs Jojart (Sat Dec 19 2009 - 14:56:22 CST)
  • Axel Kohlmeyer (Sat Dec 19 2009 - 14:45:59 CST)
  • Balazs Jojart (Sat Dec 19 2009 - 12:16:22 CST)
• pbc wrap command for two chain protein structure
  • Z. Erge Akbas (Sun Apr 24 2016 - 14:30:29 CDT)
• PBC wrap deleting PBC boundaries during wrapping
  • Adupa Vasista (Wed Jan 08 2020 - 04:41:12 CST)
  • Christian Seitz (Tue Jan 07 2020 - 17:37:24 CST)
  • John Stone (Tue Jan 07 2020 - 14:27:38 CST)
  • Christian Seitz (Mon Jan 06 2020 - 18:37:42 CST)
• pbc wrap for nonbonded group of atoms
  • SHRAVANI NETHI . (Mon May 20 2024 - 06:40:34 CDT)
• pbc wrap issue
  • Aditi Gotkhindikar (Sun Jan 23 2022 - 23:55:55 CST)
• PBC wrap on hexagonal periodic cells
  • OPC3_at_pitt.edu (Thu Oct 28 2010 - 12:12:51 CDT)
• pbc wrap question
  • Daniel Klose (Mon Aug 27 2012 - 03:22:04 CDT)
• PBC wrap with an octahedral water box
  • Benedetta Sampoli Benitez (Wed Jan 27 2021 - 11:44:46 CST)
• PBC Wrapping
  • McGuire, Kelly (Sun Oct 25 2020 - 20:34:15 CDT)
  • René Hafner TUK (Sun Oct 25 2020 - 06:13:12 CDT)
  • René Hafner TUK (Fri Oct 23 2020 - 04:15:15 CDT)
  • René Hafner TUK (Fri Oct 23 2020 - 03:25:46 CDT)
  • McGuire, Kelly (Fri Oct 23 2020 - 03:33:17 CDT)
  • McGuire, Kelly (Thu Oct 22 2020 - 16:06:22 CDT)
• pbc wrapping problem
  • Seibold, Steve Allan (Thu Oct 26 2017 - 10:37:56 CDT)
• pbc-box
  • mohammad agha (Wed May 23 2012 - 10:31:08 CDT)
  • Olaf Lenz (Wed May 23 2012 - 01:31:41 CDT)
  • mohammad agha (Tue May 22 2012 - 08:10:30 CDT)
  • Olaf Lenz (Tue May 22 2012 - 02:42:45 CDT)
  • mohammad agha (Mon May 21 2012 - 23:30:38 CDT)
  • mohammad agha (Sat May 19 2012 - 08:02:59 CDT)
• pbc: relation of orthonormalizing; cart. coords; rotation matrices.
  • Olaf Lenz (Mon Oct 09 2006 - 09:58:55 CDT)
  • Neelanjana Sengupta (Mon Oct 09 2006 - 09:48:49 CDT)
  • Neelanjana Sengupta (Thu Oct 05 2006 - 12:17:57 CDT)
  • Neelanjana Sengupta (Thu Oct 05 2006 - 11:55:17 CDT)
• pbctools & Desmond trajectory with protein units 'jumping' into other cells
  • Irene Newhouse (Mon Jan 10 2011 - 13:22:26 CST)
• pbctools installation error
  • John Stone (Fri Feb 22 2019 - 17:30:33 CST)
  • Tripathi, Ashutosh (Fri Feb 22 2019 - 16:28:37 CST)
  • Vermaas, Joshua (Fri Feb 22 2019 - 16:15:14 CST)
  • Vermaas, Joshua (Fri Feb 22 2019 - 16:05:03 CST)
  • Tripathi, Ashutosh (Fri Feb 22 2019 - 16:10:30 CST)
  • Tripathi, Ashutosh (Fri Feb 22 2019 - 14:27:40 CST)
• pbctools on alpha version
  • Olaf Lenz (Wed Apr 22 2009 - 06:14:42 CDT)
  • Dan Lussier (Wed Apr 22 2009 - 03:46:23 CDT)
  • Axel Kohlmeyer (Sat Apr 18 2009 - 10:11:47 CDT)
  • Olaf Lenz (Sat Apr 18 2009 - 04:18:50 CDT)
  • Dan Lussier (Fri Apr 17 2009 - 09:05:06 CDT)
• PBCTools Plugin
  • John Stone (Mon Mar 26 2007 - 15:56:23 CDT)
  • Zheng Hu (Mon Mar 26 2007 - 15:14:50 CDT)
• pbctools plugin & protein-bound ligand
  • Irene Newhouse (Wed May 25 2011 - 14:59:59 CDT)
  • Olaf Lenz (Wed May 25 2011 - 02:01:11 CDT)
  • Irene Newhouse (Tue May 24 2011 - 14:36:12 CDT)
• pbctools usage
  • Axel Kohlmeyer (Wed Oct 08 2008 - 10:23:44 CDT)
  • Subramanian Vaitheeswaran (Wed Oct 08 2008 - 08:21:10 CDT)
• PBCtools verison 2.3: how to obtain it?
  • Olaf Lenz (Sun Oct 26 2008 - 02:57:17 CDT)
  • Axel Kohlmeyer (Fri Oct 24 2008 - 10:32:16 CDT)
  • mon_sharma_at_research.iiit.ac.in (Fri Oct 24 2008 - 09:19:37 CDT)
• PBCTools-problem getting unitcell parameters
  • Axel Kohlmeyer (Thu Nov 12 2009 - 20:25:30 CST)
  • A D (Thu Nov 12 2009 - 19:40:31 CST)
• pbcunwrap, DL_POLY v 3
  • Olaf Lenz (Wed May 09 2007 - 23:50:34 CDT)
  • Joshua D. Moore (Wed May 09 2007 - 11:27:29 CDT)
  • Olaf Lenz (Wed May 09 2007 - 08:52:55 CDT)
  • Axel Kohlmeyer (Wed May 09 2007 - 07:42:23 CDT)
  • Joshua D. Moore (Wed May 09 2007 - 01:37:14 CDT)
• PBCWrap for Gromacs?
  • John Stone (Tue Jun 29 2004 - 13:52:45 CDT)
  • Xu Zhiping (Tue Jun 29 2004 - 07:19:33 CDT)
• PBCwrap tools
  • Molybdos Kirkimpolakis (Sun Jul 10 2011 - 16:08:47 CDT)
  • Axel Kohlmeyer (Sun Jul 10 2011 - 11:38:26 CDT)
  • Molybdos Kirkimpolakis (Sun Jul 10 2011 - 09:20:00 CDT)
  • Axel Kohlmeyer (Sun Jul 10 2011 - 05:34:09 CDT)
  • Molybdos Kirkimpolakis (Sun Jul 10 2011 - 00:17:29 CDT)
  • Axel Kohlmeyer (Sat Jul 09 2011 - 18:33:24 CDT)
  • Simulation Biology (Sat Jul 09 2011 - 17:48:29 CDT)
• PBCwrap: wrapping DCD files
  • John Stone (Tue Jun 29 2004 - 13:20:48 CDT)
  • Vani Krishna (Mon Jun 28 2004 - 22:03:45 CDT)
• PBS script for LINUX cluster
  • Florian Haberl (Wed Jan 19 2005 - 02:56:39 CST)
  • Brian Bennion (Tue Jan 18 2005 - 10:25:05 CST)
  • Swarna Patra (Sun Jan 16 2005 - 20:03:04 CST)
• pbwithin a defined coordinate
  • MD Simulation (Tue Mar 30 2021 - 08:48:51 CDT)
• pbwithin and within differences
  • Roman Petrenko (Tue Oct 27 2009 - 09:09:36 CDT)
  • Olaf Lenz (Tue Oct 27 2009 - 08:26:08 CDT)
  • Gustavo Gust (Tue Oct 27 2009 - 06:48:51 CDT)
• pbwithin selection
  • Axel Kohlmeyer (Thu Nov 10 2011 - 09:27:47 CST)
  • arash azari (Thu Nov 10 2011 - 07:58:28 CST)
• PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file
  • Ian Stokes-Rees (Wed Jul 21 2010 - 12:20:56 CDT)
  • Prskalo, Alen-Pilip (Wed Jul 21 2010 - 08:42:42 CDT)
  • Axel Kohlmeyer (Wed Jul 21 2010 - 09:09:19 CDT)
  • Axel Kohlmeyer (Wed Jul 21 2010 - 08:11:34 CDT)
  • Ian Stokes-Rees (Wed Jul 21 2010 - 07:07:51 CDT)
  • Prskalo, Alen-Pilip (Wed Jul 21 2010 - 02:40:27 CDT)
• PC-gamess
  • Ran Friedman (Tue Feb 20 2007 - 11:24:32 CST)
  • John Stone (Tue Feb 20 2007 - 10:55:57 CST)
  • Ran Friedman (Tue Feb 20 2007 - 08:33:27 CST)
  • Per Jr. Greisen (Tue Feb 20 2007 - 05:02:45 CST)
• PCA analysis of NAMD dcd files
  • Joshua Adelman (Tue Oct 19 2010 - 07:30:16 CDT)
  • surendra jain (Tue Oct 19 2010 - 04:58:47 CDT)
• PCA of desmond trajectories
  • Hitesh Patel (Wed Feb 01 2012 - 09:29:15 CST)
• PCA/NMA/Secondary structure analysis with bigdcd
  • Hocine el khaoudi enyoury (Tue Jan 17 2023 - 03:53:21 CST)
• pdb - generation
  • John Stone (Tue Mar 21 2006 - 10:16:00 CST)
  • Florian Haberl (Tue Mar 21 2006 - 09:06:57 CST)
  • Osmany guirola Cruz (Tue Mar 21 2006 - 06:39:31 CST)
• pdb -arge magnitude coordinates
  • Axel Kohlmeyer (Sat Apr 20 2013 - 12:57:38 CDT)
  • Mohan maruthi sena (Fri Apr 19 2013 - 00:34:56 CDT)
• pdb and topology files for DNA
  • Ashar Malik (Fri Jul 03 2015 - 13:18:23 CDT)
  • Mohsen Farshad (Fri Jul 03 2015 - 12:01:54 CDT)
• pdb animation
  • Nuno Sousa Cerqueira (Thu Jul 10 2014 - 08:56:02 CDT)
  • Maxim Belkin (Thu Jul 10 2014 - 08:53:21 CDT)
  • Nuno Sousa Cerqueira (Thu Jul 10 2014 - 08:33:19 CDT)
  • Richard Wood (Thu Jul 10 2014 - 08:31:54 CDT)
  • Nuno Sousa Cerqueira (Thu Jul 10 2014 - 07:24:47 CDT)
• PDB CONECT
  • John Stone (Tue May 30 2006 - 15:37:41 CDT)
  • Mihaly Mezei (Tue May 30 2006 - 15:26:36 CDT)
• PDB COORDINATES
  • Axel Kohlmeyer (Sun Jul 26 2009 - 19:59:55 CDT)
  • Edward P. Manning (Sun Jul 26 2009 - 19:08:28 CDT)
• pdb download bug
  • John Stone (Tue Jun 27 2017 - 20:32:36 CDT)
  • Albers, Thomas (Mon Jun 26 2017 - 13:44:07 CDT)
• PDB file
  • John Stone (Sun Jan 03 2010 - 02:23:41 CST)
  • Burak Cankurtaran (Tue Dec 29 2009 - 05:41:23 CST)
  • nunolf_at_ci.uc.pt (Thu Dec 21 2006 - 14:22:10 CST)
  • nunolf_at_ci.uc.pt (Thu Dec 21 2006 - 08:49:55 CST)
  • Rita Cassia (Thu Dec 21 2006 - 05:53:15 CST)
• pdb file generated not readable by tleap
  • Axel Kohlmeyer (Fri May 22 2009 - 10:08:06 CDT)
  • Myunggi Yi (Fri May 22 2009 - 09:19:36 CDT)
  • Axel Kohlmeyer (Wed May 20 2009 - 16:28:54 CDT)
  • Yi Shang (Wed May 20 2009 - 14:49:26 CDT)
• PDB file output
  • Justin Gullingsrud (Tue Jul 25 2000 - 12:22:38 CDT)
  • Sergei Izrailev (Tue Jul 25 2000 - 12:26:18 CDT)
  • B. Bennion (Tue Jul 25 2000 - 11:59:40 CDT)
• pdb file reading error
  • Rima Chaudhuri (Wed Jul 05 2006 - 12:16:59 CDT)
• pdb file with different number of molecules
  • Axel Kohlmeyer (Wed Mar 16 2011 - 13:20:42 CDT)
  • Peyman Z.Moghadam (Wed Mar 16 2011 - 12:30:53 CDT)
• pdb files
  • VISWANADHA SRIDHARA (Wed Jan 05 2005 - 16:08:28 CST)
  • Axel Kohlmeyer (Wed Jan 05 2005 - 02:39:13 CST)
  • nordgren_at_sas.upenn.edu (Tue Jan 04 2005 - 23:02:30 CST)
  • Axel Kohlmeyer (Tue Jan 04 2005 - 14:02:50 CST)
  • VISWANADHA SRIDHARA (Tue Jan 04 2005 - 12:48:14 CST)
  • John Stone (Tue Jan 04 2005 - 10:26:53 CST)
  • John Stone (Tue Jan 04 2005 - 10:23:26 CST)
  • Axel Kohlmeyer (Tue Jan 04 2005 - 01:33:53 CST)
  • VISWANADHA SRIDHARA (Mon Jan 03 2005 - 18:19:04 CST)
• PDB Files for Carbon Nanotubes
  • Gaurav Sharma (Sun Jul 17 2005 - 17:22:55 CDT)
• pdb files in VMD/NAMD TUTORIAL
  • John Stone (Thu Jan 16 2003 - 15:11:53 CST)
  • Ioana Cozmuta (Wed Jan 15 2003 - 21:52:27 CST)
• PDB Format
  • Raman Preet Singh (Fri Dec 18 2020 - 00:45:47 CST)
  • John Stone (Thu Dec 17 2020 - 22:54:15 CST)
  • Peter Freddolino (Thu Dec 17 2020 - 22:50:15 CST)
  • Bennion, Brian (Thu Dec 17 2020 - 22:44:26 CST)
  • McGuire, Kelly (Thu Dec 17 2020 - 18:52:37 CST)
  • Justin Gullingsrud (Sun Dec 15 2002 - 23:07:05 CST)
  • Ioana Cozmuta (Fri Dec 13 2002 - 20:23:17 CST)
• pdb from trajectory
  • _at_huji.ac.il (Tue Jan 23 2007 - 09:16:29 CST)
• PDB loading in old vmd versions
  • Stefan Boresch (Thu Oct 12 2017 - 01:58:03 CDT)
  • John Stone (Wed Oct 11 2017 - 14:43:24 CDT)
  • Stefan Boresch (Wed Oct 11 2017 - 14:01:56 CDT)
  • John Stone (Wed Oct 11 2017 - 09:46:50 CDT)
  • Stefan Boresch (Wed Oct 11 2017 - 03:52:04 CDT)
  • Ashar Malik (Wed Oct 11 2017 - 03:18:41 CDT)
  • Stefan Boresch (Wed Oct 11 2017 - 01:40:25 CDT)
• PDB manipulation
  • nahren manuel (Wed Aug 31 2011 - 05:07:03 CDT)
  • John Stone (Fri Aug 05 2011 - 16:35:52 CDT)
  • nahren manuel (Fri Jul 29 2011 - 09:44:38 CDT)
• PDB manipulation options
  • Peter Freddolino (Wed May 29 2019 - 14:12:16 CDT)
  • Roshan Shrestha (Wed May 29 2019 - 12:41:37 CDT)
• pdb naming convention
  • Justin Gullingsrud (Wed Apr 17 2002 - 10:26:39 CDT)
  • Adrian E. Roitberg (Wed Apr 17 2002 - 07:59:32 CDT)
• pdb naming convention to get ribbon representation
  • John Stone (Thu Sep 01 2011 - 07:59:26 CDT)
  • Casey Johnson (Wed Aug 31 2011 - 09:08:11 CDT)
• PDB Parser cannot interpret ^M ?
  • John Stone (Wed Feb 15 2006 - 11:29:03 CST)
  • Francis Reyes (Tue Feb 14 2006 - 22:53:06 CST)
• PDB Question
  • Bennion, Brian (Mon Apr 23 2018 - 12:34:18 CDT)
  • McGuire, Kelly (Mon Apr 23 2018 - 12:05:44 CDT)
  • Giacomo Fiorin (Mon Apr 23 2018 - 06:40:11 CDT)
  • jrhau lung (Mon Apr 23 2018 - 06:56:53 CDT)
  • McGuire, Kelly (Sun Apr 22 2018 - 18:40:00 CDT)
• pdb reader plugin error checking
  • John Stone (Thu Sep 22 2016 - 15:14:12 CDT)
  • Bennion, Brian (Thu Sep 22 2016 - 13:28:07 CDT)
  • John Stone (Thu Sep 22 2016 - 12:05:16 CDT)
  • John Stone (Tue Sep 20 2016 - 16:17:47 CDT)
  • Bennion, Brian (Tue Sep 20 2016 - 13:47:26 CDT)
• pdb reader/writer appears to corrupt pdb output
  • Bennion, Brian (Thu Feb 16 2012 - 16:04:27 CST)
  • John Stone (Thu Feb 16 2012 - 16:21:53 CST)
  • John Stone (Thu Feb 16 2012 - 15:51:08 CST)
  • Bennion, Brian (Thu Feb 16 2012 - 14:49:06 CST)
• pdb structure off the web
  • John Stone (Tue Jan 03 2006 - 10:06:25 CST)
  • sheldonp_at_sas.upenn.edu (Mon Jan 02 2006 - 10:00:06 CST)
• PDB structures of peptides
  • Aravinda Munasinghe (Thu Feb 14 2019 - 18:26:40 CST)
  • Mikhail Suyetin (Thu Feb 14 2019 - 03:05:15 CST)
• PDB to STL help needed
  • John Stone (Tue Sep 06 2005 - 11:15:01 CDT)
  • John Stone (Wed Aug 03 2005 - 12:59:09 CDT)
  • Kevin Smith (Wed Aug 03 2005 - 09:23:02 CDT)
• pdb was not generated
  • Richard Wood (Thu Jan 14 2016 - 15:25:28 CST)
  • Lai, Jonathan (Thu Jan 14 2016 - 14:49:08 CST)
  • Albert (Thu Jan 14 2016 - 13:48:28 CST)
  • Albert (Thu Jan 14 2016 - 13:59:54 CST)
  • Josh Vermaas (Thu Jan 14 2016 - 13:55:15 CST)
  • Albert (Thu Jan 14 2016 - 13:48:46 CST)
  • Josh Vermaas (Thu Jan 14 2016 - 13:41:00 CST)
  • Albert (Thu Jan 14 2016 - 11:53:36 CST)
• PDB with CONECT records
  • Raman Preet Singh (Tue Mar 14 2023 - 08:18:34 CDT)
• pdbalias not working
  • Samuel C Flores (Wed Jun 21 2006 - 14:12:41 CDT)
  • John Stone (Wed Jun 21 2006 - 13:55:41 CDT)
  • Samuel C Flores (Thu Jun 15 2006 - 21:42:06 CDT)
• PDBx and chain IDs in VMD 1.9.4a55
  • Whitford, Paul (Thu Jun 23 2022 - 22:29:17 CDT)
  • Whitford, Paul (Fri Feb 04 2022 - 10:28:32 CST)
• PDBx/CIF Problem on New PDBs
  • Jason Smith (Sat Jan 22 2022 - 14:55:29 CST)
  • Andrew White (Thu Jan 20 2022 - 10:38:44 CST)
• PDMS with VMD
  • Buddhika Jayasena (Tue Jan 14 2014 - 16:07:07 CST)
• Pegasus Technologies FreeD drivers?
  • Eugene Leitl (Wed Dec 08 1999 - 15:05:42 CST)
  • John Stone (Wed Dec 08 1999 - 10:08:33 CST)
  • Eugene Leitl (Fri Nov 26 1999 - 19:39:54 CST)
• People having plugin troubles, READ THIS
  • John Stone (Fri Aug 30 2002 - 13:54:55 CDT)
• peptide builder
  • L. Michel Espinoza-Fonseca (Fri Sep 07 2007 - 11:26:41 CDT)
  • Arneh Babakhani (Fri Sep 07 2007 - 10:50:23 CDT)
  • Leandro Martínez (Sat Apr 22 2006 - 16:07:56 CDT)
  • dimka (Sat Apr 22 2006 - 14:58:34 CDT)
  • Leandro Martínez (Sat Apr 22 2006 - 12:21:04 CDT)
  • John Robinson (Fri Apr 21 2006 - 15:19:01 CDT)
• Peptides with Linkage between N-Terminus and Side Chain
  • Josh Vermaas (Thu Apr 09 2020 - 17:04:14 CDT)
  • Josh Vermaas (Tue Apr 07 2020 - 15:29:25 CDT)
  • Hendrik Schröder (Tue Apr 07 2020 - 13:17:07 CDT)
• Per Residue Interaction Energy from Desmond MD simulations
  • Axel Kohlmeyer (Fri Jun 12 2015 - 05:57:23 CDT)
  • Daniel Moore (Fri Jun 12 2015 - 04:54:02 CDT)
• Per-frame 'graphics'?
  • John Stone (Sat Nov 01 2008 - 10:12:56 CDT)
  • Axel Kohlmeyer (Fri Oct 31 2008 - 16:59:44 CDT)
  • Benjamin Bouvier (Fri Oct 31 2008 - 13:36:24 CDT)
  • Benjamin Bouvier (Fri Oct 31 2008 - 10:46:03 CDT)
  • Rogan Carr (Fri Oct 31 2008 - 11:22:55 CDT)
• per-residue alignment
  • Toni Giorgino (Fri Dec 10 2010 - 09:05:01 CST)
  • Antonija Tomiæ (Wed Dec 01 2010 - 02:24:33 CST)
• Percentage Helicity calculation in VMD
  • John Stone (Sat Feb 02 2008 - 15:30:18 CST)
  • Peter Freddolino (Sat Feb 02 2008 - 08:42:40 CST)
  • aneesh cna (Fri Feb 01 2008 - 03:18:53 CST)
  • Axel Kohlmeyer (Thu Jan 31 2008 - 23:37:28 CST)
  • aneesh cna (Thu Jan 31 2008 - 22:54:53 CST)
• perform hbond analysis in the terminal
  • Saikat Pal (Sat Sep 07 2019 - 02:30:43 CDT)
• Performance of psfgen...
  • Jim Phillips (Thu Sep 20 2012 - 18:39:27 CDT)
  • John Stone (Thu Sep 20 2012 - 17:37:50 CDT)
• performing PCA in VMD
  • Ahmet Bakan (Wed May 15 2013 - 16:08:17 CDT)
  • Ahmet Bakan (Wed May 15 2013 - 09:24:15 CDT)
  • Payman Pirzadeh (Tue May 14 2013 - 19:38:23 CDT)
• Period images not appearing
  • Ackad, Edward (Mon Sep 26 2022 - 14:38:12 CDT)
  • Nathan Kern (Fri Sep 23 2022 - 15:13:43 CDT)
  • Ackad, Edward (Fri Sep 23 2022 - 13:29:45 CDT)
• Periodic BC
  • Olaf Lenz (Tue Sep 23 2008 - 02:47:30 CDT)
  • Nd S (Mon Sep 22 2008 - 15:26:20 CDT)
• Periodic Bonding
  • Bishop, Thomas C (Thu Aug 13 2009 - 14:46:24 CDT)
  • Olaf Lenz (Wed Aug 12 2009 - 10:56:53 CDT)
  • Axel Kohlmeyer (Wed Aug 12 2009 - 09:42:00 CDT)
  • Liang, Linus H. (Wed Aug 12 2009 - 08:44:19 CDT)
• periodic bonds in vmd
  • Fatemesadat Emami (Tue Jul 17 2012 - 14:38:41 CDT)
  • Axel Kohlmeyer (Tue Jul 17 2012 - 14:27:39 CDT)
  • Olaf Lenz (Tue Jul 17 2012 - 14:15:45 CDT)
  • Fatemesadat Emami (Tue Jul 17 2012 - 13:10:59 CDT)
• Periodic boundaries and long bonds
  • Olaf Lenz (Thu May 22 2014 - 01:17:51 CDT)
• Periodic boundary conditions
  • Justin Gullingsrud (Thu Aug 18 2005 - 13:43:38 CDT)
  • Bob Johnson (Thu Aug 18 2005 - 12:00:19 CDT)
• periodic boundary conditions (yes, i read the tutorials)
  • John Stone (Tue Jul 29 2008 - 13:22:57 CDT)
  • Balazs Jojart (Tue Jul 29 2008 - 01:21:17 CDT)
  • Axel Kohlmeyer (Mon Jul 28 2008 - 20:44:41 CDT)
  • Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
  • Roman Petrenko (Mon Jul 28 2008 - 19:46:09 CDT)
• periodic boundary conditions displaying
  • John Stone (Mon Apr 06 2015 - 10:24:36 CDT)
  • Ming Tang (Sun Apr 05 2015 - 03:58:31 CDT)
• Periodic boundary conditions for multimeric systems
  • Maryam X (Tue Jul 23 2019 - 10:34:18 CDT)
  • Axel Kohlmeyer (Mon Jul 22 2019 - 11:58:08 CDT)
  • Philippe Bopp (Mon Jul 22 2019 - 10:47:24 CDT)
  • Maryam X (Mon Jul 22 2019 - 07:38:47 CDT)
• periodic boundry in movie
  • Josh Vermaas (Fri Nov 20 2015 - 07:54:16 CST)
  • James Lord (Fri Nov 20 2015 - 02:45:52 CST)
• Periodic box display feature suggestion
  • Axel Kohlmeyer (Mon Jan 10 2005 - 15:00:47 CST)
  • Marc Baaden (Sat Jan 08 2005 - 12:41:13 CST)
• periodic box image in tcl script
  • John Stone (Tue Oct 07 2008 - 13:22:02 CDT)
  • Brian Kidd (Mon Sep 29 2008 - 11:27:39 CDT)
• periodic box lines
  • John Stone (Mon Dec 01 2003 - 12:43:36 CST)
  • Anna Modzelewska (Mon Dec 01 2003 - 06:50:05 CST)
• periodic box manipulation
  • Vlad Cojocaru (Fri Oct 26 2007 - 07:39:58 CDT)
• periodic box manipulation (solution)
  • Vlad Cojocaru (Fri Oct 26 2007 - 09:04:03 CDT)
• periodic boxes
  • Jonathan Phillips (Fri Jun 14 2013 - 16:53:33 CDT)
• Periodic builder?
  • John Stone (Wed Aug 09 2006 - 13:36:16 CDT)
  • andras.borosy_at_givaudan.com (Tue Aug 08 2006 - 07:26:51 CDT)
• Periodic cell has become too small for original patch grid
  • Tahmina Akter (Tue Jul 19 2016 - 11:38:23 CDT)
• Periodic Conditions for Hexagonal Membrane System
  • Axel Kohlmeyer (Fri May 19 2017 - 19:40:24 CDT)
  • Arthur Oliveira Vale (Fri May 19 2017 - 18:52:11 CDT)
• periodic display and space group and VMD
  • Axel Kohlmeyer (Tue Jul 06 2004 - 14:18:34 CDT)
  • John Stone (Tue Jul 06 2004 - 10:28:43 CDT)
  • Pawel Sikorski (Tue Jul 06 2004 - 09:24:40 CDT)
• Periodic display problem
  • John Stone (Thu Aug 26 2004 - 14:04:59 CDT)
  • John Stone (Wed Aug 25 2004 - 10:18:51 CDT)
  • Axel Kohlmeyer (Wed Aug 25 2004 - 01:52:26 CDT)
  • John Stone (Tue Aug 24 2004 - 12:44:43 CDT)
  • John Stone (Tue Aug 24 2004 - 10:13:25 CDT)
  • Axel Kohlmeyer (Tue Aug 24 2004 - 09:56:02 CDT)
  • John Stone (Tue Aug 24 2004 - 09:29:15 CDT)
  • Keith Refson (Tue Aug 24 2004 - 05:34:31 CDT)
• Periodic image
  • Axel Kohlmeyer (Thu Oct 17 2019 - 04:40:39 CDT)
  • Samuel Canner (Wed Oct 16 2019 - 23:17:13 CDT)
• Periodic image and transformation matrix
  • Axel Kohlmeyer (Mon Jul 21 2008 - 19:50:24 CDT)
  • Cesar Avila (Mon Jul 21 2008 - 19:20:06 CDT)
• Periodic Images
  • John Stone (Mon Mar 22 2004 - 11:40:42 CST)
  • Joshua A. Speidel (Fri Mar 19 2004 - 14:10:07 CST)
  • Justin Gullingsrud (Tue Jul 29 2003 - 11:38:15 CDT)
  • J. Rui Rodrigues (Tue Jul 29 2003 - 11:43:23 CDT)
• periodic images for trajectory
  • Olaf Lenz (Wed Feb 27 2008 - 04:59:30 CST)
  • Axel Kohlmeyer (Wed Feb 27 2008 - 05:07:04 CST)
  • Jennifer Williams (Wed Feb 27 2008 - 04:18:56 CST)
• periodic images in the hydrogen bond tool
  • Fatemesadat Emami (Fri Jan 11 2013 - 14:15:37 CST)
• periodic images of molecule containing custom graphics
  • Axel Kohlmeyer (Wed Nov 07 2012 - 06:37:38 CST)
  • rocfo (Wed Nov 07 2012 - 05:31:46 CST)
• periodic images with xyz coordinates
  • John Stone (Mon Nov 11 2013 - 16:25:59 CST)
  • Chris Knorowski (Mon Nov 11 2013 - 16:09:50 CST)
• Periodic Tab with PDB input
  • Josh Vermaas (Wed Mar 25 2015 - 09:48:04 CDT)
  • Axel Kohlmeyer (Wed Mar 25 2015 - 08:59:25 CDT)
  • Viswanath Pasumarthi (Wed Mar 25 2015 - 08:06:54 CDT)
• periodic woes
  • Jan Saam (Fri Sep 12 2003 - 04:42:09 CDT)
  • Lubos Vrbka (Thu Sep 11 2003 - 16:34:59 CDT)
  • Scott Stagg (Thu Sep 11 2003 - 15:07:33 CDT)
• periodical boundary condition associated chain seperating?
  • sunyeping (Thu May 12 2016 - 04:02:24 CDT)
• periodicity and bonds
  • Celia Bremer (Wed Nov 14 2012 - 10:23:18 CST)
• Permanent position Research Software HPC Engineer at the University of Delaware
  • Juan R. Perilla (Thu Jul 14 2022 - 09:19:01 CDT)
• Persistent troubles with tk fonts
  • John Stone (Mon Feb 09 2015 - 15:32:56 CST)
  • John Stone (Wed Aug 13 2014 - 12:28:32 CDT)
  • Vlastimil Zíma (Wed Aug 13 2014 - 12:21:12 CDT)
  • Vlastimil Zíma (Wed Aug 13 2014 - 11:34:42 CDT)
  • Josh Vermaas (Wed Aug 13 2014 - 09:48:33 CDT)
  • Vlastimil Zíma (Wed Aug 13 2014 - 04:12:10 CDT)
  • Vlastimil Zíma (Wed Dec 04 2013 - 03:11:02 CST)
  • John Stone (Wed Nov 27 2013 - 13:09:04 CST)
  • Vlastimil Zíma (Wed Nov 27 2013 - 10:11:34 CST)
  • Vlastimil Zíma (Fri Oct 05 2012 - 12:07:49 CDT)
  • John Stone (Fri Oct 05 2012 - 09:08:05 CDT)
  • Vlastimil Zíma (Thu Oct 04 2012 - 04:07:03 CDT)
• Perspective Ratio Problems
  • John Stone (Wed Jan 28 2004 - 14:59:21 CST)
  • Matt Elder (Wed Jan 28 2004 - 12:41:54 CST)
• PET force field & topolgy files
  • wolfinbm_at_uci.edu (Wed Dec 27 2006 - 17:24:59 CST)
• Ph.D. and Post-doc positions in molecular simulations and structural bioinformatics
  • Jan Brezovsky (Mon Mar 05 2018 - 11:10:28 CST)
  • Jan Brezovsky (Sun Feb 11 2018 - 15:58:39 CST)
• Ph.D. candidate position in biomolecular modeling or bioinformatics
  • Jan Brezovsky (Wed Jul 04 2018 - 05:33:36 CDT)
• Phantom and VMD
  • John Stone (Mon Sep 20 2004 - 15:58:40 CDT)
  • Adam Kubach (Mon Sep 20 2004 - 15:18:18 CDT)
• Phantom Omni Haptic Device
  • John Stone (Mon Jan 07 2008 - 01:49:31 CST)
  • Martin Held (Sun Jan 06 2008 - 15:00:47 CST)
• phantom omni linux install
  • John Stone (Thu Mar 21 2013 - 10:57:58 CDT)
  • Thomas C. Bishop (Tue Mar 19 2013 - 11:28:14 CDT)
• phantom omni linux install: Phantom OMNI HOWTO
  • John Stone (Thu Mar 21 2013 - 11:00:46 CDT)
  • Thomas C. Bishop (Wed Mar 20 2013 - 12:52:17 CDT)
• Phantom on Sgi?
  • John Stone (Wed Aug 14 2002 - 10:16:58 CDT)
  • Kenneth Ayers (Wed Aug 14 2002 - 08:41:13 CDT)
• PhD and postdoctoral positions in biomolecular simulation
  • Allison, Jane (Thu Jan 07 2016 - 15:50:48 CST)
• PhD position available
  • Ashar Malik (Sat Nov 12 2016 - 19:17:08 CST)
• PhD position in Computational Structural Biology at MPI Muenster
  • Axel Kohlmeyer (Sun May 15 2011 - 16:47:40 CDT)
  • Gianluca Interlandi (Sun May 15 2011 - 14:42:22 CDT)
  • Vlad Cojocaru (Sun May 15 2011 - 13:47:01 CDT)
  • Axel Kohlmeyer (Sun May 15 2011 - 11:51:22 CDT)
  • Olaf Lenz (Sun May 15 2011 - 10:34:40 CDT)
  • Bjoern Olausson (Fri May 13 2011 - 13:23:05 CDT)
  • Wendy González (Fri May 13 2011 - 07:54:29 CDT)
  • Ajasja LjubetiÄ� (Fri May 13 2011 - 07:04:26 CDT)
  • Vlad Cojocaru (Fri May 13 2011 - 04:49:14 CDT)
• PhD Position In Computational Structural Biology Of Membrane Proteins
  • Marawan Hussien (Mon Jul 06 2020 - 22:07:44 CDT)
• Phi and Psi angles for particular residues as a function of time
  • Ashar Malik (Tue Jul 14 2020 - 11:27:50 CDT)
  • Akash Pandya (Tue Jul 14 2020 - 10:38:28 CDT)
• phi and psi information
  • Axel Kohlmeyer (Thu Jun 23 2005 - 04:09:59 CDT)
  • nordgren_at_sas.upenn.edu (Thu Jun 23 2005 - 04:02:50 CDT)
  • matteo.pennestri_at_virgilio.it (Thu Jun 23 2005 - 00:55:54 CDT)
• phi-psi plot
  • Ajasja LjubetiÄ� (Mon Mar 28 2011 - 08:08:32 CDT)
  • Ramya Narasimhan (Mon Mar 28 2011 - 05:29:01 CDT)
• Phonon spectrum and VACF
  • Axel Kohlmeyer (Tue Dec 14 2010 - 13:08:07 CST)
  • jj mm (Tue Dec 14 2010 - 12:09:38 CST)
  • Axel Kohlmeyer (Thu Dec 09 2010 - 05:26:13 CST)
  • jj mm (Thu Dec 09 2010 - 03:11:03 CST)
• Phosphate ions
  • Raman Preet Singh (Sat Aug 28 2021 - 08:43:43 CDT)
• Phosphate mass
  • John Stone (Tue Sep 28 2004 - 09:55:29 CDT)
  • Manuel Rueda (Tue Sep 28 2004 - 08:43:52 CDT)
  • Manuel Rueda (Tue Sep 28 2004 - 07:55:44 CDT)
• phosphorylation modelling
  • Zhang, Jiong (MU-Student) (Mon Sep 13 2010 - 15:11:49 CDT)
• pick atom id script
  • Abu Naser (Fri Jul 11 2008 - 06:07:05 CDT)
  • David Tanner (Fri Jul 11 2008 - 09:32:53 CDT)
  • Axel Kohlmeyer (Fri Jul 11 2008 - 09:37:49 CDT)
• pick center with tcl text command
  • Yi Shang (Mon Oct 15 2012 - 11:59:59 CDT)
• Picking atoms
  • Olaf Lenz (Fri Jul 16 2004 - 10:06:46 CDT)
• Picking atoms: romoving or changing the position of atoms
  • Olaf Lenz (Tue Jul 20 2004 - 12:11:17 CDT)
  • Albert Sun (Mon Jul 19 2004 - 11:51:50 CDT)
  • John Stone (Mon Jul 19 2004 - 10:11:32 CDT)
  • Olaf Lenz (Mon Jul 19 2004 - 03:44:44 CDT)
  • Albert Sun (Sun Jul 18 2004 - 09:17:00 CDT)
• picture/resid color
  • John Stone (Tue Apr 02 2002 - 11:18:55 CST)
  • Peter Varnai (Tue Apr 02 2002 - 11:11:36 CST)
• Pictures
  • John Stone (Fri Dec 21 2001 - 11:08:48 CST)
  • Sanjeev B.S. (Fri Dec 21 2001 - 10:55:12 CST)
• pictures with frame
  • Mario Valle (Tue Feb 03 2009 - 02:56:50 CST)
  • BIN ZHANG (Tue Feb 03 2009 - 01:40:32 CST)
• pictures with frame (corrected)
  • Mario Valle (Tue Feb 03 2009 - 02:58:39 CST)
• pKa and Temperature in MD
  • Caterina Bernini (Tue Mar 31 2009 - 14:47:39 CDT)
• Place complex in the center
  • Amnah Alalmaie (Wed May 12 2021 - 14:13:11 CDT)
• Place multiple proteins into membrane
  • Georcki Ropon (Tue Jan 11 2022 - 14:31:08 CST)
• Placing a peptide between two points
  • Mohan maruthi sena (Fri Apr 12 2013 - 10:48:44 CDT)
  • Axel Kohlmeyer (Thu Apr 11 2013 - 00:41:14 CDT)
  • Mohan maruthi sena (Wed Apr 10 2013 - 02:47:31 CDT)
• placing graphics objects at fixed locations on the display
  • John Stone (Tue Oct 06 2020 - 10:46:04 CDT)
  • Goedde, Chris (Mon Oct 05 2020 - 14:39:02 CDT)
• placing text labels near atoms using draw text
  • John Stone (Tue Feb 28 2017 - 16:55:41 CST)
  • Garold Murdachaew (Mon Feb 27 2017 - 10:35:04 CST)
• planned support for Catalina?
  • John Stone (Thu Aug 29 2019 - 22:10:32 CDT)
  • Gumbart, JC (Thu Aug 29 2019 - 17:03:28 CDT)
  • Gumbart, JC (Thu Aug 29 2019 - 14:53:05 CDT)
  • John Stone (Thu Aug 29 2019 - 15:24:40 CDT)
• Play at the world's leading online casino.....
  • Bobbie Horton (Thu Apr 10 2008 - 01:28:24 CDT)
  • Ned Roy (Wed Apr 09 2008 - 01:14:11 CDT)
• playing legos with peptide segments
  • Neelanjana Sengupta (Sun Jun 07 2015 - 15:48:40 CDT)
  • Thomas C. Bishop (Wed Jun 03 2015 - 13:55:43 CDT)
  • Neelanjana Sengupta (Wed Jun 03 2015 - 10:14:16 CDT)
• Playing part of a trajectory using TCL
  • John Stone (Wed May 03 2006 - 18:06:12 CDT)
  • David Chalmers (Tue May 02 2006 - 05:30:37 CDT)
• Playing trajectories using HMDs
  • John Stone (Wed May 31 2017 - 16:48:16 CDT)
  • Philip Loche (Wed Apr 12 2017 - 04:48:49 CDT)
• Please help me understand the .dx file generated when using PME Electrostatics Analysis
  • Jester Itliong (Sat Dec 09 2023 - 20:02:02 CST)
  • Axel Kohlmeyer (Sat Dec 09 2023 - 14:48:21 CST)
  • Jester Itliong (Sat Dec 09 2023 - 11:46:29 CST)
• Please remove me from mailing list
  • John Stone (Thu Aug 02 2018 - 12:00:45 CDT)
  • Christine Horejs (Wed Aug 01 2018 - 04:59:12 CDT)
• please remove me from the list
  • Denis Davydov (Fri May 17 2013 - 04:40:56 CDT)
• Please unsubscribe me from VMD mailing list
  • Scott W. Sides (Wed Jun 14 2000 - 11:39:20 CDT)
• Please vote for VMD in HPCWire Reader's Choice Awards....
  • John Stone (Wed Sep 09 2015 - 14:03:32 CDT)
• please, give me a tip
  • Axel Kohlmeyer (Tue Jul 11 2006 - 11:24:20 CDT)
  • Leonardo Trabuco (Tue Jul 11 2006 - 11:05:57 CDT)
  • Yuri Nedialkov (Tue Jul 11 2006 - 10:02:20 CDT)
• Please, help
  • Peter Freddolino (Mon Jul 10 2006 - 17:14:17 CDT)
  • Yuri Nedialkov (Mon Jul 10 2006 - 13:48:35 CDT)
• pleaseme help how to build Metal ion topology file conneted
  • aramice Malkhasian (Sat Aug 11 2012 - 01:50:05 CDT)
• PLO2 Patch
  • Francesco Greco (Sat Oct 24 2015 - 09:44:14 CDT)
• Plot a time line in the movie made with VMD
  • Bogdan Costescu (Wed Dec 01 2010 - 15:44:56 CST)
  • ABEL Stephane 175950 (Wed Dec 01 2010 - 11:08:39 CST)
• plot color scale for volume slice
  • John Stone (Sun Nov 07 2004 - 21:02:23 CST)
  • YAMAZAKI Takeshi (Sat Nov 06 2004 - 16:12:28 CST)
• Plot of distance between two atoms vs frame number
  • Stojanoski, Vlatko (Tue Aug 18 2015 - 15:21:10 CDT)
  • Prof. Eddie (Tue Aug 18 2015 - 15:26:01 CDT)
  • Bennion, Brian (Tue Aug 18 2015 - 14:24:08 CDT)
  • Stojanoski, Vlatko (Tue Aug 18 2015 - 12:35:48 CDT)
• plot residues without hydrogen atoms
  • Peter Freddolino (Tue May 20 2008 - 08:13:32 CDT)
  • Axel Kohlmeyer (Tue May 20 2008 - 07:40:19 CDT)
  • ABEL Stephane 175950 (Tue May 20 2008 - 07:02:41 CDT)
• Plot RMSD/RMSF/SASA Results from Multiple Trajectories on Same Plot
  • Efthymiou, Christos (Thu May 19 2022 - 14:53:57 CDT)
• plot secondary structure of protein along trajectory.
  • Norman Geist (Mon Feb 02 2015 - 03:39:04 CST)
  • Vy Phan (Mon Feb 02 2015 - 01:20:50 CST)
• plot the box margins
  • Olaf Lenz (Wed Jan 10 2007 - 03:11:40 CST)
  • wurl (Wed Jan 10 2007 - 02:40:35 CST)
• Plot the value of the current frame in the Progress Bar for elapsed Time
  • Axel Kohlmeyer (Thu Dec 02 2010 - 10:47:31 CST)
  • ABEL Stephane 175950 (Thu Dec 02 2010 - 09:51:44 CST)
• Plot waters vs time in a trajectory
  • Diego Vazquez (Tue Oct 20 2015 - 21:44:05 CDT)
  • M K (Tue Oct 20 2015 - 20:08:49 CDT)
  • M K (Tue Oct 20 2015 - 20:04:27 CDT)
  • Chitrak Gupta (Mon Oct 19 2015 - 16:36:15 CDT)
  • Axel Kohlmeyer (Mon Oct 19 2015 - 15:51:23 CDT)
  • Daniela Rivas (Mon Oct 19 2015 - 15:05:24 CDT)
• plotchart problem
  • Albert (Thu Nov 13 2014 - 03:11:24 CST)
• Plotting elect. pot. surface
  • Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 08:05:14 CST)
  • John Stone (Wed Feb 27 2002 - 01:34:49 CST)
  • Alan Wilter Sousa da Silva (Tue Feb 26 2002 - 14:16:22 CST)
  • John Stone (Mon Feb 25 2002 - 17:26:28 CST)
  • Laurence F. Wood (Mon Feb 25 2002 - 17:20:34 CST)
  • John Stone (Mon Feb 25 2002 - 13:25:22 CST)
  • John Stone (Mon Feb 25 2002 - 13:17:44 CST)
  • Alan Wilter Sousa da Silva (Mon Feb 25 2002 - 14:40:57 CST)
  • John Stone (Mon Feb 25 2002 - 11:27:53 CST)
  • Alan Wilter Sousa da Silva (Mon Feb 25 2002 - 12:15:52 CST)
• Plotting Number of Hbonds and % Helicity with Time
  • Axel Kohlmeyer (Sat Nov 11 2006 - 18:57:25 CST)
  • Adelene Sim (Sat Nov 11 2006 - 18:11:22 CST)
• Plotting of Co-ordinates on VMD
  • Barry Isralewitz (Fri Mar 30 2012 - 14:25:06 CDT)
  • Jeffrey Potoff (Fri Mar 30 2012 - 14:04:27 CDT)
  • Axel Kohlmeyer (Fri Mar 30 2012 - 12:49:51 CDT)
  • james Fernandez (Fri Mar 30 2012 - 11:37:07 CDT)
• plotting on Mac
  • Claw Isthelaw (Sat Aug 11 2007 - 19:53:35 CDT)
  • John Stone (Fri Aug 10 2007 - 15:11:43 CDT)
  • Alison Grinthal (Fri Aug 10 2007 - 14:50:11 CDT)
• Plotting orbitals from Molden file
  • Chang, Christopher (Fri Feb 19 2021 - 13:35:02 CST)
  • John Stone (Fri Feb 19 2021 - 02:23:43 CST)
  • Chang, Christopher (Tue Feb 16 2021 - 16:53:56 CST)
• Plotting potential energy
  • Axel Kohlmeyer (Thu Dec 09 2010 - 05:27:57 CST)
  • Joyce Tan (Thu Dec 09 2010 - 03:36:19 CST)
• plotting spin density
  • Axel Kohlmeyer (Thu May 05 2011 - 22:45:20 CDT)
  • Olesya Haze (Thu May 05 2011 - 18:17:50 CDT)
• plotting wave functions
  • John Stone (Thu Apr 10 2003 - 19:27:36 CDT)
  • Ioana Cozmuta (Thu Apr 10 2003 - 18:45:23 CDT)
• plotting x y z data
  • Luis Gracia (Thu May 04 2006 - 08:14:27 CDT)
  • Prof. Y. U. Sasidhar (Thu May 04 2006 - 07:12:57 CDT)
  • Axel Kohlmeyer (Thu May 04 2006 - 07:01:39 CDT)
  • Prof. Y. U. Sasidhar (Thu May 04 2006 - 02:14:38 CDT)
• Ployhedra in VMD
  • John Stone (Mon Sep 26 2005 - 18:20:28 CDT)
  • Jen-Chang Chen (Mon Sep 26 2005 - 07:56:53 CDT)
  • John Stone (Thu Sep 15 2005 - 11:11:25 CDT)
  • Jen-Chang Chen (Wed Sep 14 2005 - 03:58:30 CDT)
• Pls help me to render files with only traces of proteins!
  • Mauricio Carrillo Tripp (Thu Feb 06 2003 - 08:06:38 CST)
  • B. Bennion (Thu Feb 06 2003 - 13:23:01 CST)
  • Margaret Cheung (Thu Feb 06 2003 - 11:12:19 CST)
  • John Stone (Thu Feb 06 2003 - 10:53:38 CST)
  • John Stone (Thu Feb 06 2003 - 10:51:46 CST)
  • Margaret Cheung (Wed Feb 05 2003 - 23:41:50 CST)
  • B. Bennion (Wed Feb 05 2003 - 21:13:34 CST)
  • Margaret Cheung (Wed Feb 05 2003 - 19:48:33 CST)
  • John Stone (Wed Feb 05 2003 - 19:28:31 CST)
  • Margaret Cheung (Wed Feb 05 2003 - 19:06:41 CST)
• Pls help me to render files with only traces of proteins!]
  • John Stone (Thu Feb 06 2003 - 13:55:43 CST)
• Pls help, Q abt PDB->PSF
  • Peter Freddolino (Sun Jan 28 2007 - 00:38:29 CST)
  • Stanley, Yemin Shi (Sat Jan 27 2007 - 21:55:02 CST)
• PLT file format?
  • John Stone (Tue Jul 15 2003 - 23:16:39 CDT)
  • Dallas Warren (Tue Jul 15 2003 - 17:58:30 CDT)
  • John Stone (Thu Jul 03 2003 - 13:58:53 CDT)
  • John Stone (Tue Jun 24 2003 - 10:46:43 CDT)
  • Dallas Warren (Thu Jun 19 2003 - 16:39:43 CDT)
  • John Stone (Thu Jun 19 2003 - 11:03:28 CDT)
  • Dallas Warren (Wed Jun 18 2003 - 01:55:31 CDT)
• plt plugin found
  • Oliver Beckstein (Tue Nov 25 2003 - 09:33:14 CST)
• plt plugin missing (?)
  • Oliver Beckstein (Tue Nov 25 2003 - 09:14:51 CST)
• plug-in for DNA .dcd
  • brataraj ghosh (Tue Jan 03 2017 - 02:05:25 CST)
• plug-in for multiple frame xyz files
  • John Stone (Mon Feb 10 2003 - 14:32:39 CST)
  • Luca UvA (Mon Feb 10 2003 - 04:17:08 CST)
• plugin
  • Axel Kohlmeyer (Mon Sep 05 2011 - 14:37:19 CDT)
  • kirtana S (Mon Sep 05 2011 - 13:38:47 CDT)
• plugin : membrane builder : "integer value too large to represent"
  • Lepore, Bryan (Wed Aug 18 2010 - 17:40:37 CDT)
  • John Stone (Wed Aug 18 2010 - 13:07:13 CDT)
  • Lepore, Bryan (Wed Aug 18 2010 - 10:21:07 CDT)
• Plugin compilation
  • Axel Kohlmeyer (Mon May 15 2006 - 13:07:50 CDT)
  • John Stone (Mon May 15 2006 - 12:13:49 CDT)
  • angel (Fri May 12 2006 - 16:19:47 CDT)
• Plugin compilation problem
  • John Stone (Thu May 18 2006 - 17:57:48 CDT)
  • angel (Thu May 18 2006 - 17:41:16 CDT)
• plugin for Abinit output files
  • John Stone (Sun Oct 17 2010 - 17:54:20 CDT)
  • Rob (Sun Sep 26 2010 - 23:45:15 CDT)
  • Rob (Sun Sep 26 2010 - 23:36:52 CDT)
  • John Stone (Sun Sep 19 2010 - 20:18:56 CDT)
  • Rob (Sat Aug 28 2010 - 03:22:05 CDT)
• plugin for reading (and writing) trajectories with a varying number of atoms
  • Axel Kohlmeyer (Fri Nov 06 2009 - 14:51:02 CST)
• Plugin Issue
  • John Stone (Sat Mar 31 2007 - 00:19:20 CDT)
  • Luis Gracia (Wed Mar 28 2007 - 13:14:40 CDT)
  • John Stone (Wed Mar 28 2007 - 11:13:06 CDT)
  • James Keener (Wed Mar 28 2007 - 09:45:18 CDT)
• plugin path problem
  • Albert (Thu Jan 24 2013 - 12:33:04 CST)
• plugin problem
  • John Stone (Tue Aug 30 2005 - 10:14:13 CDT)
  • bybaker_at_itsa.ucsf.edu (Tue Aug 30 2005 - 01:17:45 CDT)
• plugin problems
  • John Stone (Tue Jul 16 2002 - 14:45:39 CDT)
• plugin source tree
  • John Stone (Thu Dec 08 2005 - 15:15:35 CST)
  • Cojocaru,Vlad (Thu Dec 08 2005 - 14:57:46 CST)
• Plugin testing
  • B. Bennion (Thu Jun 06 2002 - 12:07:05 CDT)
• Plugin to read DCD files
  • Bennion, Brian (Fri Sep 18 2015 - 10:05:38 CDT)
  • Josh Vermaas (Thu Sep 17 2015 - 18:26:37 CDT)
  • Gianluca Interlandi (Thu Sep 17 2015 - 17:35:29 CDT)
• plugin: can I load volumetric data as frames (i.e. timesteps)?
  • John Stone (Wed Jun 10 2009 - 11:12:17 CDT)
  • Ondrej Marsalek (Wed Jun 10 2009 - 11:28:26 CDT)
  • Ondrej Marsalek (Wed Jun 10 2009 - 10:09:03 CDT)
  • John Stone (Wed Jun 10 2009 - 09:43:20 CDT)
  • Axel Kohlmeyer (Wed Jun 10 2009 - 08:16:58 CDT)
  • Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
  • John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
  • Rob (Wed Jun 10 2009 - 03:11:34 CDT)
• Plugin: molfile_plugin_t filename_extension; problem and bug...
  • John Stone (Mon May 25 2009 - 23:28:34 CDT)
  • Axel Kohlmeyer (Mon May 25 2009 - 09:52:04 CDT)
  • Rob (Sun May 24 2009 - 22:39:33 CDT)
• Plugins and did I compile VMD correctly?
  • John Stone (Thu Aug 12 2004 - 18:13:01 CDT)
  • Stephen Montgomery-Smith (Thu Aug 12 2004 - 16:51:42 CDT)
  • John Stone (Thu Aug 12 2004 - 16:14:01 CDT)
  • Stephen Montgomery-Smith (Thu Aug 12 2004 - 11:05:49 CDT)
• plugins compilation problem - gcc switches
  • John Stone (Wed May 25 2005 - 10:26:12 CDT)
  • Mgr. Lubos Vrbka (Wed May 25 2005 - 09:19:25 CDT)
• Plugins Problem with 1.8.1b2
  • John Stone (Mon May 12 2003 - 11:03:23 CDT)
  • Patrick Ladam (Mon May 12 2003 - 04:08:14 CDT)
• Plugins show no text
  • P C Kroon (Thu Aug 30 2018 - 04:25:46 CDT)
  • Vermaas, Joshua (Wed Aug 29 2018 - 15:06:07 CDT)
  • John Stone (Wed Aug 29 2018 - 12:04:46 CDT)
  • Vermaas, Joshua (Wed Aug 29 2018 - 11:11:13 CDT)
  • Peter Kroon (Wed Aug 29 2018 - 10:15:22 CDT)
  • Peter Kroon (Wed Aug 29 2018 - 10:04:02 CDT)
  • Vermaas, Joshua (Tue Aug 28 2018 - 07:21:00 CDT)
  • Peter Kroon (Tue Aug 28 2018 - 05:04:06 CDT)
• Plugins update
  • John Stone (Tue Aug 23 2005 - 09:41:09 CDT)
  • floquet_at_icsn.cnrs-gif.fr (Tue Aug 23 2005 - 04:00:39 CDT)
• Plugins use after compilation question
  • Axel Kohlmeyer (Mon Feb 27 2012 - 13:30:49 CST)
  • Anthony Cruz Balberdi (Mon Feb 27 2012 - 12:38:01 CST)
• Plugins...
  • John Stone (Sat May 07 2005 - 11:31:35 CDT)
  • Luis Rosales (Fri May 06 2005 - 19:31:11 CDT)
• plugins/hesstrans/Makefile recurses on CXXFLAGS
  • John Stone (Wed Mar 21 2012 - 11:15:38 CDT)
  • Benjamin Kaduk (Mon Mar 19 2012 - 21:42:36 CDT)
• Plugins: plz add one more conversion to unit_conversion.h
  • John Stone (Mon Jun 22 2009 - 14:54:33 CDT)
  • Rob (Sun Jun 21 2009 - 21:00:57 CDT)
• PME boolean
  • Peter Freddolino (Fri Aug 14 2020 - 07:27:01 CDT)
  • Ashar Malik (Fri Aug 14 2020 - 03:03:02 CDT)
  • Debajeet Ghosh (Fri Aug 14 2020 - 02:14:30 CDT)
• PME calculations
  • Philippe Bopp (Wed Nov 06 2013 - 10:50:37 CST)
• PME Electrostatics Error
  • Rohit Goswami (Fri Jun 19 2015 - 12:22:06 CDT)
  • Rohit Goswami (Fri Jun 19 2015 - 09:08:50 CDT)
  • John Stone (Fri Jun 19 2015 - 09:28:51 CDT)
  • John Stone (Fri Jun 19 2015 - 09:21:27 CDT)
  • Rohit Goswami (Fri Jun 19 2015 - 09:23:27 CDT)
  • John Stone (Fri Jun 19 2015 - 08:42:11 CDT)
  • Rohit Goswami (Fri Jun 19 2015 - 05:36:35 CDT)
• PME isosurface not superimposed on protein
  • Irene Newhouse (Mon Jan 11 2010 - 17:17:50 CST)
  • Axel Kohlmeyer (Mon Jan 11 2010 - 16:59:59 CST)
  • Irene Newhouse (Mon Jan 11 2010 - 16:20:50 CST)
• PME plugin
  • John Stone (Tue Jun 12 2007 - 16:48:54 CDT)
  • Cesar Luis Avila (Tue Jun 12 2007 - 11:22:26 CDT)
  • Cesar Luis Avila (Tue Jun 12 2007 - 11:18:47 CDT)
• PME units
  • Cesar Luis Avila (Tue Oct 03 2006 - 15:05:17 CDT)
  • Jim Phillips (Tue Oct 03 2006 - 14:47:35 CDT)
  • Francesco Iori (Tue Oct 03 2006 - 11:36:54 CDT)
• PME values
  • Jim Phillips (Wed Aug 24 2005 - 15:27:43 CDT)
  • floquet_at_icsn.cnrs-gif.fr (Tue Aug 23 2005 - 09:38:16 CDT)
• PMEpot + bigDCD ?
  • Cesar Luis Avila (Wed Sep 05 2007 - 15:08:00 CDT)
• PMEpot plugin
  • Bryan Roessler (Wed Jun 20 2012 - 17:03:25 CDT)
  • Axel Kohlmeyer (Tue Jun 19 2012 - 13:06:38 CDT)
  • Abolfazl Bayat (Tue Jun 19 2012 - 11:43:42 CDT)
• PMEPot plugin: epilon-surface
  • Anders Gabrielsson (Wed Sep 16 2015 - 04:29:29 CDT)
• PMEpot units
  • jirasak wong-ekkabut (Thu Oct 30 2008 - 15:10:05 CDT)
• pmf calculation
  • Swarna Patra (Mon Jan 10 2005 - 19:29:24 CST)
• PMF Question
  • McGuire, Kelly (Mon Jun 04 2018 - 09:35:28 CDT)
  • Jérôme Hénin (Mon Jun 04 2018 - 07:26:33 CDT)
  • McGuire, Kelly (Thu May 31 2018 - 13:39:07 CDT)
• PMF vs distance plot from isosurface
  • Aaron Oakley (Tue Dec 14 2010 - 22:17:48 CST)
• PNY Quadro4 980XGL Card
  • John Stone (Wed Feb 05 2003 - 12:40:35 CST)
  • Jill Vickery (Wed Feb 05 2003 - 11:47:55 CST)
• Points of interaction in DNA linked proteins
  • Roshan Shrestha (Thu Dec 08 2016 - 20:46:04 CST)
• polar coordinates
  • John Stone (Wed Nov 27 2002 - 12:34:10 CST)
  • Peter VARNAI (Wed Nov 27 2002 - 11:52:10 CST)
• polar hydrogens
  • Albers, Thomas (Thu Sep 14 2017 - 10:20:12 CDT)
  • Giacomo Fiorin (Wed Sep 13 2017 - 14:04:46 CDT)
  • Vermaas, Joshua (Wed Sep 13 2017 - 13:41:30 CDT)
  • Albers, Thomas (Wed Sep 13 2017 - 12:07:46 CDT)
  • Karteek Kumar (Wed Sep 13 2017 - 12:39:35 CDT)
• polar surface area with VMD!
  • John Stone (Mon Jul 12 2004 - 10:10:04 CDT)
  • Ramesh Sistla (Mon Jul 12 2004 - 13:22:48 CDT)
• polyethylene topology
  • Arturas Ziemys (Tue Dec 05 2006 - 12:05:57 CST)
• polyhedra / based on atom selection
  • Huinink, H.P. (Thu Jul 02 2015 - 04:31:52 CDT)
• polyhedra representation + periodic images
  • John Stone (Wed Mar 21 2018 - 10:32:18 CDT)
  • sperez14_at_us.es (Wed Mar 21 2018 - 05:44:55 CDT)
• Polyhedra with two selections?
  • John Stone (Mon Nov 30 2009 - 09:54:00 CST)
  • Axel Kohlmeyer (Mon Nov 30 2009 - 05:10:54 CST)
  • Georg Spiekermann (Mon Nov 30 2009 - 04:01:12 CST)
• polymer bead spring model file format
  • Joshua Adelman (Wed Nov 18 2009 - 06:48:36 CST)
  • Olaf Lenz (Wed Nov 18 2009 - 02:20:38 CST)
  • Axel Kohlmeyer (Tue Nov 17 2009 - 12:40:49 CST)
  • Ding, L. (Tue Nov 17 2009 - 11:15:50 CST)
• Polymer Building in VMD
  • Gkourmpis, Thomas (Tue May 22 2012 - 08:21:12 CDT)
• Polymer helix wrapping on the outer surface of carbon nanotube
  • Tim Lo (Fri Jan 13 2017 - 20:38:12 CST)
  • konda003 . (Fri Jan 13 2017 - 14:32:43 CST)
• polymer molecule orientation parameter
  • Catherine Tweedie (Mon Sep 10 2007 - 13:45:11 CDT)
• polynucleotide builder
  • Jacob Pøhlsgaard (Mon Apr 24 2006 - 04:31:54 CDT)
  • L. Michel Espinoza-Fonseca (Mon Apr 24 2006 - 02:15:31 CDT)
  • Jean Richelle (Sun Apr 23 2006 - 17:05:17 CDT)
• Poor Hydrogen Placement in AutoPSF
  • Peter Freddolino (Mon Mar 20 2006 - 17:00:30 CST)
  • Brian Bennion (Mon Mar 20 2006 - 16:54:20 CST)
  • Peter Freddolino (Mon Mar 20 2006 - 16:50:03 CST)
  • Peter Freddolino (Mon Mar 20 2006 - 13:09:04 CST)
  • Brian Bennion (Mon Mar 20 2006 - 10:27:52 CST)
  • Peter Freddolino (Sun Mar 19 2006 - 14:51:49 CST)
  • Brian Bennion (Fri Mar 17 2006 - 16:39:15 CST)
• Poor man's stereolithography
  • Samuel C Flores (Thu Nov 30 2006 - 12:37:04 CST)
  • John Stone (Thu Nov 30 2006 - 10:42:08 CST)
  • Morizono, Hiroki (Thu Nov 30 2006 - 09:07:51 CST)
• poorly get coordinates
  • JC Gumbart (Thu Oct 13 2005 - 13:43:01 CDT)
  • Samuel Flores (Thu Oct 13 2005 - 13:17:42 CDT)
• POPC from charmm27 to charmm36
  • Raul Araya (Fri Aug 20 2010 - 18:43:00 CDT)
• POPC lipid parameters reference
  • Ravinder Abrol (Mon Jan 02 2006 - 18:46:45 CST)
  • Taeho Kim (Mon Jan 02 2006 - 09:41:55 CST)
  • Ravinder Abrol (Wed Dec 28 2005 - 15:47:31 CST)
• POPC membrane equilibration
  • Vermaas, Joshua (Mon Oct 03 2016 - 15:00:55 CDT)
  • Roshan Shrestha (Mon Oct 03 2016 - 08:11:23 CDT)
• POPC membrane in Leap, Amber Format
  • Rejwan (Mon Jun 17 2013 - 10:34:32 CDT)
• POPE CHARMM36 generations error.
  • Axel Kohlmeyer (Thu Nov 24 2011 - 14:46:47 CST)
  • mail gromacs (Thu Nov 24 2011 - 13:13:02 CST)
• POPS topology file
  • lucie huynh (Mon Nov 12 2007 - 03:55:04 CST)
• pops/popc lipid bilayer
  • Jianping Lin (Wed Mar 11 2009 - 19:32:42 CDT)
• porcupine plot
  • Ban Arn (Wed Feb 05 2014 - 10:19:39 CST)
  • Axel Kohlmeyer (Wed Feb 05 2014 - 09:13:31 CST)
  • Revthi Sanker (Wed Feb 05 2014 - 08:05:55 CST)
  • Benjamin Hall (Thu Apr 03 2008 - 12:00:11 CDT)
  • John Stone (Wed Apr 02 2008 - 23:41:12 CDT)
  • Benjamin Hall (Wed Apr 02 2008 - 17:30:49 CDT)
  • Oliver Beckstein (Wed Apr 02 2008 - 16:46:40 CDT)
  • Axel Kohlmeyer (Mon Mar 31 2008 - 04:01:53 CDT)
  • SWAPNA (Mon Mar 31 2008 - 01:06:36 CDT)
  • John Stone (Mon Mar 31 2008 - 01:22:18 CDT)
• porcupine plot - dynatraj server missing
  • John Stone (Mon Feb 18 2013 - 10:00:22 CST)
  • NG HUI WEN (Mon Feb 18 2013 - 00:18:29 CST)
• Porcupine plot with nmwiz
  • John Stone (Tue Jul 31 2018 - 11:38:16 CDT)
  • Funzo_at_seznam.cz (Tue Jul 31 2018 - 11:06:17 CDT)
  • John Stone (Tue Jul 31 2018 - 10:03:14 CDT)
  • Funzo_at_seznam.cz (Thu Jul 26 2018 - 09:34:19 CDT)
• porcupine plots for PC1
  • Carsten Olbrich (Thu Dec 10 2009 - 04:43:03 CST)
  • Joshua Adelman (Mon Dec 07 2009 - 06:49:11 CST)
  • Joshua Adelman (Sun Dec 06 2009 - 15:22:06 CST)
  • Dawn (Sun Dec 06 2009 - 13:29:19 CST)
• Porcupine update
  • Carsten Olbrich (Wed Feb 17 2010 - 03:03:27 CST)
• PorcupinePlot: invalid command name error
  • Shubhangi Gupta (Fri Jul 22 2016 - 05:42:57 CDT)
• Pore lining residues over a trajactory.
  • Yogesh Sharma (Mon Jul 13 2020 - 06:34:58 CDT)
• pore radius measurement
  • John Stone (Thu Jul 12 2012 - 10:34:38 CDT)
  • Raul Araya (Fri Jun 29 2012 - 13:50:00 CDT)
• pore visualization in throughout trajectory
  • Yogesh Sharma (Thu Jan 16 2020 - 12:43:46 CST)
• Pore volume/radius in protein bundles
  • John Stone (Fri May 28 2004 - 19:10:15 CDT)
  • Vani Krishna (Thu May 27 2004 - 11:57:34 CDT)
• porsche design is your style;
  • Fletcher Quick (Thu Jun 18 2009 - 14:18:17 CDT)
• position of protein respect to membrane
  • andrea spitaleri (Tue Sep 27 2005 - 04:00:31 CDT)
  • andrea spitaleri (Tue Sep 27 2005 - 03:41:35 CDT)
  • John Stone (Mon Sep 26 2005 - 10:26:59 CDT)
  • andrea spitaleri (Mon Sep 26 2005 - 09:35:10 CDT)
• positioning a protein with trans etc.
  • Marc Baaden (Wed Oct 30 2002 - 11:52:09 CST)
  • John Stone (Wed Oct 30 2002 - 10:02:35 CST)
  • Marc Baaden (Wed Oct 30 2002 - 05:33:26 CST)
  • Stéphane Teletchéa (Wed Oct 30 2002 - 02:26:36 CST)
  • Marc Baaden (Tue Oct 29 2002 - 16:02:55 CST)
  • John Stone (Tue Oct 29 2002 - 15:56:18 CST)
  • Marc Baaden (Tue Oct 29 2002 - 12:59:56 CST)
• positioning of a compound
  • Esteban Gabriel Vega Hissi (Wed Aug 12 2009 - 16:07:37 CDT)
  • Steve Seibold (Wed Aug 12 2009 - 15:11:00 CDT)
  • jen hsin (Wed Aug 12 2009 - 15:02:15 CDT)
  • John Stone (Wed Aug 12 2009 - 14:59:04 CDT)
  • Steve Seibold (Wed Aug 12 2009 - 14:48:23 CDT)
• Positioning protein on membrane-water interface
  • Allen, Caley R (Fri Jun 17 2016 - 14:27:23 CDT)
• positively charged portion of the protein surface
  • Thomas Evangelidis (Thu Mar 08 2012 - 06:23:20 CST)
• Possible Bug
  • John Stone (Sun Feb 24 2019 - 19:22:55 CST)
  • McGuire, Kelly (Sat Feb 23 2019 - 23:19:28 CST)
  • John Stone (Sat Feb 23 2019 - 20:54:38 CST)
  • McGuire, Kelly (Sat Feb 23 2019 - 00:32:30 CST)
• Possible bug in freeing global selections
  • Ajasja LjubetiÄ� (Thu Oct 28 2010 - 17:23:16 CDT)
  • Ajasja LjubetiÄ� (Thu Oct 28 2010 - 13:05:33 CDT)
  • Axel Kohlmeyer (Thu Oct 28 2010 - 13:11:30 CDT)
  • Axel Kohlmeyer (Thu Oct 28 2010 - 09:22:13 CDT)
  • Ajasja LjubetiÄ� (Thu Oct 28 2010 - 08:16:14 CDT)
  • Ajasja LjubetiÄ� (Thu Oct 28 2010 - 06:56:02 CDT)
• Possible bug in LAMMPS plugin
  • John Stone (Fri Oct 13 2006 - 16:53:56 CDT)
  • Lutz Maibaum (Thu Oct 05 2006 - 19:11:56 CDT)
  • Marco Kalweit (Thu Oct 05 2006 - 16:48:28 CDT)
  • Lutz Maibaum (Thu Oct 05 2006 - 12:44:30 CDT)
  • Marco Kalweit (Thu Oct 05 2006 - 10:06:25 CDT)
  • John Stone (Wed Oct 04 2006 - 00:24:11 CDT)
  • Lutz Maibaum (Tue Oct 03 2006 - 11:49:23 CDT)
  • Lutz Maibaum (Mon Oct 02 2006 - 15:10:43 CDT)
• Possible bug in topotools plugin
  • Morteza Jalalvand (Sun Jan 03 2016 - 11:24:45 CST)
  • Axel Kohlmeyer (Sun Jan 03 2016 - 11:17:49 CST)
  • Morteza Jalalvand (Sun Jan 03 2016 - 10:53:44 CST)
• Possible bug in vmd 1.8.7 alpha?
  • John Stone (Sat Apr 18 2009 - 17:02:20 CDT)
  • Axel Kohlmeyer (Sat Apr 18 2009 - 10:15:24 CDT)
  • Cesar Millan (Sat Apr 18 2009 - 00:09:57 CDT)
• possible chain select bug on RCSB ".ent" files
  • Thomas C. Bishop (Mon Jul 05 2010 - 10:08:27 CDT)
  • Leonardo Trabuco (Mon Jul 05 2010 - 09:46:18 CDT)
  • Thomas C. Bishop (Mon Jul 05 2010 - 09:30:09 CDT)
• Possible error in aligning/computing RMSD of 2 molecules with three or two atoms
  • John Stone (Sun Mar 26 2006 - 23:58:57 CST)
  • Visvaldas Kairys (Fri Mar 24 2006 - 03:45:51 CST)
  • Jan Saam (Thu Mar 23 2006 - 18:36:28 CST)
  • Brian Bennion (Thu Mar 23 2006 - 17:22:15 CST)
  • Jan Saam (Thu Mar 23 2006 - 16:17:29 CST)
  • Jan Saam (Thu Mar 23 2006 - 16:11:55 CST)
  • John Stone (Thu Mar 23 2006 - 15:55:38 CST)
  • Jan Saam (Thu Mar 23 2006 - 15:30:53 CST)
  • Visvaldas Kairys (Thu Mar 23 2006 - 13:38:09 CST)
• Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda)
  • Sam Wallace (Fri Sep 21 2012 - 19:14:00 CDT)
  • John Stone (Fri Sep 21 2012 - 16:53:06 CDT)
  • Sam Wallace (Tue Aug 28 2012 - 00:54:21 CDT)
  • John Stone (Sun Aug 26 2012 - 21:33:39 CDT)
  • Sam Wallace (Sun Aug 26 2012 - 21:27:07 CDT)
  • Axel Kohlmeyer (Sun Aug 26 2012 - 10:44:48 CDT)
  • Sam Wallace (Sun Aug 26 2012 - 09:33:24 CDT)
  • Sam Wallace (Sun Aug 26 2012 - 09:02:36 CDT)
  • Axel Kohlmeyer (Sun Aug 26 2012 - 08:05:00 CDT)
  • Sam Wallace (Sun Aug 26 2012 - 06:52:39 CDT)
• possible issue with specden package
  • Ana Celia Vila Verde (Mon Nov 23 2015 - 09:19:35 CST)
• Possible malfunctioning of VMD with Yosemite?
  • Davide Mercadante (Wed Sep 03 2014 - 14:37:39 CDT)
• Possible memory leak in vmd 1.9.4a38 or FFTK on Linux
  • John Stone (Tue Nov 24 2020 - 08:40:22 CST)
  • Pawel Kedzierski (Tue Nov 24 2020 - 07:35:35 CST)
• Possible memory leak with adding and deleting molecules frequently
  • John Stone (Tue Feb 23 2016 - 14:45:50 CST)
  • John Stone (Wed Dec 02 2015 - 15:52:53 CST)
  • Daniel Möller (Fri Nov 27 2015 - 04:33:06 CST)
• possible memory leak with pbc wrap
  • John Stone (Tue Feb 28 2012 - 14:20:14 CST)
  • Ana Celia Vila Verde (Fri Feb 24 2012 - 09:16:59 CST)
• Possible MPI code problem (and fix)
  • John Stone (Thu Mar 29 2012 - 09:58:15 CDT)
  • Christoph Willing (Thu Mar 29 2012 - 07:30:12 CDT)
• possible problem with graphics rep gui under with large numbers of molecules
  • John Stone (Fri Jul 27 2012 - 12:50:45 CDT)
  • Bennion, Brian (Fri Jul 27 2012 - 12:41:51 CDT)
• Possible to run VMD in parallel - Reg
  • Mani Kandan (Thu Jul 05 2018 - 21:03:55 CDT)
  • John Stone (Thu Jul 05 2018 - 15:09:01 CDT)
  • Mani Kandan (Thu Jul 05 2018 - 09:50:31 CDT)
  • John Stone (Thu Jul 05 2018 - 09:09:51 CDT)
  • Mani Kandan (Tue Jul 03 2018 - 13:42:21 CDT)
• Possible values for "select_method"?
  • John Stone (Mon Jan 10 2005 - 17:01:31 CST)
  • Chang, Christopher (Mon Jan 10 2005 - 16:48:27 CST)
• Postdoc Position at Penn in Chromosome Modeling
  • Hemant Kumar (Fri Apr 26 2019 - 13:41:25 CDT)
• postdoc position available
  • JC Gumbart (Tue Oct 16 2012 - 00:47:41 CDT)
• Postdoc position available...
  • John Stone (Sat May 31 2008 - 01:06:59 CDT)
• Postdoc position in computational biophysics and nanotehnology
  • Aleksei Aksimentiev (Tue May 05 2009 - 14:28:20 CDT)
• Postdoctoral fellowship Computational Drug Discovery
  • Marawan Hussien (Fri Oct 01 2021 - 12:50:10 CDT)
• Postdoctoral positions in Australia
  • Brendan O'Malley (Wed Nov 06 2002 - 04:55:13 CST)
• Postdoctoral researcher position in computational virology.
  • Juan R. Perilla (Mon Aug 26 2019 - 10:32:44 CDT)
• posting from Yahoo addresses disabled
  • Jim Phillips (Wed Apr 09 2014 - 17:10:06 CDT)
  • Jim Phillips (Tue Apr 08 2014 - 17:45:46 CDT)
• Posting messages to VMD-L truncates the empty spaces in lines
  • Rogan Carr (Wed Mar 18 2009 - 16:12:37 CDT)
  • JT (Tue Mar 17 2009 - 22:05:43 CDT)
  • John Stone (Mon Mar 16 2009 - 20:41:58 CDT)
  • JT (Mon Mar 16 2009 - 20:31:09 CDT)
  • John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
  • JT (Sun Mar 15 2009 - 18:58:01 CDT)
• pot.dx file question
  • Robin Varghese (Sat Feb 26 2011 - 15:42:04 CST)
• Pot.dx files
  • John Stone (Sun Feb 27 2011 - 22:54:11 CST)
  • Robin Varghese (Sat Feb 26 2011 - 17:18:56 CST)
  • Robin Varghese (Sat Feb 26 2011 - 17:37:37 CST)
  • Axel Kohlmeyer (Sat Feb 26 2011 - 17:29:50 CST)
  • Axel Kohlmeyer (Sat Feb 26 2011 - 15:50:57 CST)
  • Robin Varghese (Sat Feb 26 2011 - 15:02:14 CST)
• pot.dx question
  • Robin Varghese (Sat Feb 26 2011 - 15:43:35 CST)
• Potential Bug Using NAMD Energy Plugin from the Command Line
  • Diego Gomes (Sat Jun 22 2024 - 09:57:34 CDT)
  • Jacob Graham (Tue Jun 18 2024 - 14:59:45 CDT)
• Potential bugs in ffTK dihedral optimization
  • Hao Wu (Tue Nov 24 2020 - 11:17:18 CST)
  • John Stone (Thu Nov 05 2020 - 15:02:19 CST)
  • Hao Wu (Thu Nov 05 2020 - 14:56:21 CST)
  • Mariano Spivak (Thu Nov 05 2020 - 14:53:51 CST)
• Potential map animation, help!
  • Cesar Millan (Tue Nov 20 2007 - 12:40:59 CST)
  • John Stone (Tue Nov 20 2007 - 13:05:25 CST)
• Potential map display in VMD (GRASP)
  • John Stone (Mon Oct 03 2005 - 13:57:10 CDT)
  • John Stone (Thu Sep 29 2005 - 00:19:00 CDT)
  • Anton B. Guliaev (Wed Sep 28 2005 - 18:33:59 CDT)
• Potential map of Electric field of charged gas
  • mohammad rezaei (Wed Jun 24 2020 - 11:35:56 CDT)
  • Giacomo Fiorin (Wed Jun 24 2020 - 08:52:23 CDT)
  • mohammad rezaei (Wed Jun 24 2020 - 03:31:16 CDT)
• Potential memory consumption bug in VMD 1.9.1
  • John Stone (Sat Jan 12 2013 - 06:18:10 CST)
  • John Jumper (Thu Jan 10 2013 - 21:08:22 CST)
• potential surface
  • John Stone (Wed Feb 23 2005 - 16:46:15 CST)
  • matteo.pennestri_at_virgilio.it (Wed Feb 23 2005 - 16:35:00 CST)
• POV failure 2nd try
  • John Stone (Fri May 26 2000 - 13:24:42 CDT)
  • Keith Refson (Fri May 26 2000 - 13:09:04 CDT)
• POV render fails 2nd time
  • David Norris (Fri May 26 2000 - 15:15:51 CDT)
  • Keith Refson (Fri May 26 2000 - 13:00:39 CDT)
• POV renderer and volume coloring problem
  • John Stone (Thu Nov 11 2010 - 07:53:50 CST)
  • Guido Polles (Thu Nov 11 2010 - 05:33:00 CST)
• POV-Ray
  • John Stone (Wed Nov 12 2003 - 17:23:27 CST)
  • Alexandre Vakhrouchev (Wed Nov 12 2003 - 03:33:03 CST)
  • Felix Frolow (Wed Nov 12 2003 - 01:57:42 CST)
  • Tauna Rignall (Tue Nov 11 2003 - 11:19:33 CST)
  • John Stone (Mon Nov 10 2003 - 13:17:30 CST)
  • Tauna Rignall (Fri Nov 07 2003 - 14:42:13 CST)
• POV-Ray 3.6; VMD Movie Maker; Continuous Render (UNCLASSIFIED)
  • Igor Schapiro (Fri Jan 11 2008 - 07:23:57 CST)
  • Paul, Kristian (Cont, ARL/WMRD) (Thu Jan 10 2008 - 12:16:16 CST)
• Povray & color gradients
  • John Stone (Mon Nov 29 2004 - 00:31:16 CST)
  • Luis Rosales (Wed Nov 24 2004 - 16:35:55 CST)
  • Tatyana I. Igumenova (Wed Nov 24 2004 - 11:28:45 CST)
• povray images allways perspective?
  • John Stone (Thu Dec 14 2000 - 12:45:27 CST)
  • Lothar Esser (Thu Dec 14 2000 - 11:57:57 CST)
  • Barry Isralewitz (Thu Dec 14 2000 - 11:02:29 CST)
  • John Stone (Thu Dec 14 2000 - 10:51:17 CST)
  • Siegmar Kardinal (Thu Dec 14 2000 - 10:43:39 CST)
• povray problem: degenerate cylinder
  • Amadeu (Fri May 05 2006 - 09:48:43 CDT)
  • John Stone (Fri May 05 2006 - 09:38:02 CDT)
  • Amadeu (Fri May 05 2006 - 07:09:51 CDT)
• povray problem: degenerate cylinder revisited
  • John Stone (Tue Aug 14 2007 - 15:42:08 CDT)
  • Robin L Hayes (Fri Aug 10 2007 - 17:22:37 CDT)
• Povray render cuts litorice,bond,cpk representations
  • schwarz_at_titus.u-strasbg.fr (Thu Oct 09 2008 - 05:14:20 CDT)
• povray rendering help
  • Axel Kohlmeyer (Fri Jul 30 2010 - 08:41:35 CDT)
  • Ramasamy, Ellankavi (Fri Jul 30 2010 - 07:45:31 CDT)
• Povray renders labels always centered
  • John Stone (Fri Dec 23 2011 - 17:39:06 CST)
  • Bjoern Olausson (Tue Dec 13 2011 - 09:31:52 CST)
  • Axel Kohlmeyer (Mon Dec 12 2011 - 10:08:49 CST)
  • Bjoern Olausson (Mon Dec 12 2011 - 01:37:04 CST)
• ppm files
  • Carla Jamous (Tue Sep 21 2010 - 09:50:05 CDT)
  • John Stone (Mon Sep 20 2010 - 07:39:03 CDT)
  • John Stone (Mon Sep 20 2010 - 07:32:29 CDT)
  • Carla Jamous (Mon Sep 20 2010 - 07:07:52 CDT)
  • Carla Jamous (Mon Sep 20 2010 - 07:36:20 CDT)
• ppm image conversion gpu dependent?
  • Dow Hurst (Mon Jan 08 2018 - 17:22:03 CST)
• ppmtompeg
  • Axel Kohlmeyer (Wed Sep 22 2010 - 10:54:35 CDT)
  • Carla Jamous (Wed Sep 22 2010 - 07:52:42 CDT)
  • John Stone (Tue May 02 2006 - 10:48:16 CDT)
  • James Rustad (Tue May 02 2006 - 10:39:45 CDT)
• PPMTOMPEG Quality
  • Axel Kohlmeyer (Thu Apr 17 2008 - 16:23:34 CDT)
  • John Stone (Thu Apr 17 2008 - 16:38:16 CDT)
  • Anthony Ivetac (Thu Apr 17 2008 - 14:40:15 CDT)
• pqr files----
  • Axel Kohlmeyer (Tue May 29 2007 - 18:49:38 CDT)
  • Raul Araya (Tue May 29 2007 - 16:46:49 CDT)
• PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha
  • Knut Jørgen Bjuland (Wed Aug 18 2010 - 16:14:53 CDT)
  • John Stone (Wed Aug 18 2010 - 15:30:39 CDT)
  • John Stone (Wed Aug 18 2010 - 13:38:40 CDT)
  • Knut Jørgen Bjuland (Wed Aug 18 2010 - 09:11:21 CDT)
• Prachi Singh's mail
  • Daniel Barsky (Mon Jun 05 2000 - 16:35:06 CDT)
  • Barry Isralewitz (Mon Jun 05 2000 - 16:19:59 CDT)
• pre residues and ligands interaction
  • Ramin Ekhteiari (Thu Nov 21 2013 - 06:48:15 CST)
• Precompiled 1.8.5 for Linux-IA64 installs with wrong flags in lib directory?
  • John Stone (Thu Sep 21 2006 - 05:53:47 CDT)
  • Rob (Wed Sep 20 2006 - 23:53:31 CDT)
• precompiled python libraries still work for vmd 1.9
  • John Stone (Fri Jan 13 2012 - 11:24:56 CST)
  • maria goranovic (Fri Jan 13 2012 - 04:50:12 CST)
• prefferential adsorption analysis
  • Mgr. Lubos Vrbka (Fri Mar 04 2005 - 01:12:12 CST)
  • John Stone (Thu Mar 03 2005 - 15:40:57 CST)
  • Mgr. Lubos Vrbka (Wed Mar 02 2005 - 12:09:43 CST)
  • John Stone (Thu Feb 10 2005 - 10:57:19 CST)
  • Lubos Vrbka (Thu Feb 10 2005 - 02:46:53 CST)
  • Lubos Vrbka (Tue Feb 08 2005 - 05:28:58 CST)
  • Justin Gullingsrud (Thu Feb 03 2005 - 12:41:25 CST)
  • Lubos Vrbka (Thu Feb 03 2005 - 07:52:00 CST)
  • Justin Gullingsrud (Wed Feb 02 2005 - 11:41:19 CST)
  • Lubos Vrbka (Wed Feb 02 2005 - 06:51:46 CST)
• Preparation of Boron nitride using Carbon nanotube builder
  • khannan krishna (Tue Jun 17 2014 - 22:56:24 CDT)
• prepare initial structure
  • oguz gurbulak (Mon Dec 01 2008 - 13:52:31 CST)
  • Schreiner Eduard (Mon Dec 01 2008 - 14:16:48 CST)
• Preparing Simulation Files Quickly Using QwikMD
  • Efthymiou, Christos (Fri Aug 05 2022 - 03:46:56 CDT)
• preriodic box problem
  • Olaf Lenz (Sat May 31 2008 - 06:20:06 CDT)
  • Matthieu Chavent (Fri May 30 2008 - 10:40:00 CDT)
  • L. Michel Espinoza-Fonseca (Fri May 30 2008 - 05:20:24 CDT)
  • Matthieu Chavent (Fri May 30 2008 - 04:12:31 CDT)
• PRES and water-ions issues with charmm36
  • Brian Radak (Thu Dec 10 2015 - 15:58:49 CST)
  • Francesco Pietra (Thu Dec 10 2015 - 15:30:14 CST)
• preserving atom index or hexadecimal residue numbers after writepdb
  • John Stone (Fri Jan 25 2008 - 00:12:56 CST)
  • Vlad Cojocaru (Thu Jan 24 2008 - 04:44:40 CST)
• Pressure and Gpressure output in NAMD
  • Jim Phillips (Wed Aug 06 2003 - 15:23:41 CDT)
  • Vlad Cojocaru (Wed Aug 06 2003 - 10:40:55 CDT)
• Pressure Control
  • Vermaas, Joshua (Thu Oct 25 2018 - 18:35:17 CDT)
  • Gumbart, James C (Thu Oct 25 2018 - 12:53:03 CDT)
  • Norge Cruz Hernández (Tue Oct 23 2018 - 09:26:09 CDT)
• Prest1ge Repl1cas ravishing repl1ca w4tches for you
  • Liliana Dawson (Sat Aug 25 2007 - 12:24:44 CDT)
• Prest1ge Repl1cas your source for high-quality w4tches
  • Lula Miner (Thu Aug 16 2007 - 19:21:55 CDT)
• Pretty Picture
  • Justin Gullingsrud (Fri Jun 23 2000 - 12:18:47 CDT)
  • erik vogan (Wed Jun 21 2000 - 22:24:30 CDT)
  • Paul Hubbard (Wed Jun 21 2000 - 16:15:59 CDT)
• Primary structure,
  • Jinasena Hewage (Fri Jul 10 2015 - 12:53:45 CDT)
  • Lai, Jonathan (Fri Jul 10 2015 - 11:39:26 CDT)
  • Ashar Malik (Fri Jul 10 2015 - 11:21:09 CDT)
  • Jinasena Hewage (Fri Jul 10 2015 - 10:45:06 CDT)
• Principle Component Analysis of Protein PDB Structures
  • Benjamin Bouvier (Mon Feb 22 2010 - 14:43:40 CST)
  • MUHAMMAD IMTIA SHAFIQ (Mon Feb 22 2010 - 14:03:47 CST)
• Print and save DLPOLY HISTORY plots
  • John Stone (Thu Jun 19 2008 - 23:48:06 CDT)
  • mahesh naalla (Thu Jun 19 2008 - 14:08:17 CDT)
  • John Stone (Thu Jun 19 2008 - 13:05:02 CDT)
  • mahesh naalla (Thu Jun 19 2008 - 12:15:50 CDT)
• Print array
  • Ropon-Palacios G. (Mon Aug 09 2021 - 17:54:01 CDT)
• print numerical values in a Ramachandran plot
  • Rebeca García Fandiño (Wed Dec 01 2010 - 09:56:45 CST)
  • Ajasja LjubetiÄ� (Wed Dec 01 2010 - 01:54:32 CST)
  • Rebeca García Fandiño (Tue Nov 30 2010 - 17:01:12 CST)
• print results to file
  • John Stone (Mon Jul 07 2003 - 18:16:26 CDT)
• printf in tcl script
  • Mayne, Christopher G (Fri Apr 18 2014 - 18:42:33 CDT)
  • Josh Vermaas (Fri Apr 18 2014 - 17:49:32 CDT)
  • Martin, Erik W (Fri Apr 18 2014 - 17:05:09 CDT)
• Printing accessible hydrophobic surface area
  • Sabine Reisser (Mon Sep 24 2012 - 09:41:04 CDT)
• Printing Coordinates with Tcl/Tk
  • Axel Kohlmeyer (Fri Mar 30 2012 - 13:38:57 CDT)
  • Mr Bernard Ramos (Fri Mar 30 2012 - 12:16:00 CDT)
• printing out trajectories with some random indices of atoms renamed frame by frame
  • Sangkha Borah (Fri Mar 04 2016 - 13:55:43 CST)
• printing real 3D model using z-printer
  • John Stone (Thu Feb 24 2005 - 16:28:37 CST)
  • Hui-Hsu Tsai (Thu Feb 24 2005 - 14:38:04 CST)
• Printing simulation box vectors to the display window
  • Andrew DeYoung (Wed Apr 28 2021 - 15:46:29 CDT)
• printing timeline window with axes
  • John Stone (Tue Aug 14 2007 - 14:50:19 CDT)
  • hodak_at_chips.ncsu.edu (Mon Aug 13 2007 - 22:07:27 CDT)
• printing to a file from a procedure to get RMSD
  • Ana Celia Araujo Vila Verde (Thu Feb 02 2006 - 08:35:30 CST)
  • Jérôme Hénin (Tue Jan 31 2006 - 12:57:09 CST)
  • John Stone (Tue Jan 31 2006 - 10:43:23 CST)
  • Ana Celia Araujo Vila Verde (Tue Jan 31 2006 - 10:28:37 CST)
• Probe orientations in ILS
  • John Stone (Mon Feb 22 2010 - 15:41:08 CST)
  • Irene Newhouse (Mon Feb 22 2010 - 13:19:56 CST)
• problem
  • Barbault Florent (Fri Feb 13 2009 - 05:24:39 CST)
  • Paulo E. Abreu (Wed Feb 11 2009 - 11:00:15 CST)
  • Axel Kohlmeyer (Wed Feb 11 2009 - 09:01:42 CST)
  • Barbault Florent (Wed Feb 11 2009 - 02:41:52 CST)
  • vivek sharma (Wed Feb 09 2005 - 23:50:37 CST)
  • John Stone (Wed Feb 09 2005 - 10:05:25 CST)
  • vivek sharma (Wed Feb 09 2005 - 06:57:43 CST)
  • Luis Gracia (Fri Oct 08 2004 - 12:53:03 CDT)
  • Jorge Pikunic (Fri Oct 08 2004 - 10:29:25 CDT)
  • J. Rui Rodrigues (Fri Oct 08 2004 - 10:18:30 CDT)
  • vivek sharma (Fri Oct 08 2004 - 09:01:52 CDT)
  • John Stone (Tue Aug 24 2004 - 09:33:01 CDT)
  • vivek sharma (Tue Aug 24 2004 - 08:46:56 CDT)
• problem about "mol load psf md.pdf pdb md.pdb"
  • John Stone (Fri Oct 27 2006 - 13:21:31 CDT)
  • Axel Kohlmeyer (Wed Oct 25 2006 - 06:19:41 CDT)
  • Qiao Baofu (Wed Oct 25 2006 - 04:31:31 CDT)
• problem about displaying hbond in periodic box
  • Axel Kohlmeyer (Tue Apr 16 2013 - 04:41:53 CDT)
  • yi (Tue Apr 16 2013 - 04:22:06 CDT)
• problem about dowser
  • Leonardo Trabuco (Sat Sep 04 2010 - 04:36:45 CDT)
  • Chen, Zhihong (chenz2) (Fri Sep 03 2010 - 16:38:05 CDT)
• problem about hotkey for vmd-1.8.3 windows version
  • Jian Zou (Mon Jul 25 2005 - 20:47:00 CDT)
  • John Stone (Mon Jul 25 2005 - 12:49:18 CDT)
  • Jian Zou (Mon Jul 25 2005 - 09:44:12 CDT)
• problem about running
  • John Stone (Thu Apr 22 2010 - 10:36:39 CDT)
  • chiloo777 777 (Sat Apr 17 2010 - 01:54:41 CDT)
• problem at convert single trajectory frame to pdb
  • Joyce Tan (Tue Oct 19 2010 - 22:41:27 CDT)
  • Axel Kohlmeyer (Tue Oct 19 2010 - 22:04:44 CDT)
  • Joyce Tan (Tue Oct 19 2010 - 21:58:16 CDT)
  • John Stone (Tue Oct 19 2010 - 12:35:58 CDT)
  • Axel Kohlmeyer (Tue Oct 19 2010 - 12:53:31 CDT)
  • Joyce Tan (Tue Oct 19 2010 - 12:38:24 CDT)
  • John Stone (Tue Oct 19 2010 - 12:03:43 CDT)
  • Joyce Tan (Tue Oct 19 2010 - 11:58:00 CDT)
  • John Stone (Tue Oct 19 2010 - 11:39:47 CDT)
  • Nicholas Musolino (Tue Oct 19 2010 - 12:10:51 CDT)
  • John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
  • Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
  • Joyce Tan (Tue Oct 19 2010 - 10:36:43 CDT)
• Problem building POPE membrane with plugin using CHARMM36
  • JC Gumbart (Fri Oct 14 2011 - 15:09:44 CDT)
  • Axel Kohlmeyer (Fri Oct 14 2011 - 13:38:52 CDT)
  • Zumot, Elia Nabil (Fri Oct 14 2011 - 11:55:18 CDT)
  • John Stone (Fri Oct 14 2011 - 11:37:57 CDT)
  • Zumot, Elia Nabil (Fri Oct 14 2011 - 11:18:25 CDT)
  • John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
  • JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
  • Maggie Pruitt (Mon Sep 19 2011 - 12:19:41 CDT)
• Problem building vmd 1.8.3 and destroyed usable 1.8.2 version
  • John Stone (Mon Sep 26 2005 - 10:09:15 CDT)
  • Dr. Seth Olsen (Mon Sep 26 2005 - 00:28:22 CDT)
• Problem by removing vmd 1.9.1 and installing 1.9.2.
  • Axel Kohlmeyer (Fri Feb 06 2015 - 21:55:59 CST)
  • Majid Shahbabaei (Fri Feb 06 2015 - 21:31:06 CST)
  • Norman Geist (Fri Feb 06 2015 - 07:15:18 CST)
  • Axel Kohlmeyer (Fri Feb 06 2015 - 06:47:56 CST)
  • Majid Shahbabaei (Fri Feb 06 2015 - 05:28:48 CST)
  • Norman Geist (Fri Feb 06 2015 - 02:41:41 CST)
  • Majid Shahbabaei (Fri Feb 06 2015 - 01:19:13 CST)
  • Josh Vermaas (Thu Feb 05 2015 - 21:13:34 CST)
  • Majid Shahbabaei (Thu Feb 05 2015 - 19:55:18 CST)
  • Norman Geist (Thu Feb 05 2015 - 06:46:40 CST)
  • Khuong Truong Gia (Thu Feb 05 2015 - 05:56:15 CST)
  • Majid Shahbabaei (Thu Feb 05 2015 - 05:32:16 CST)
• problem compiling on redhat 7.0
  • John Stone (Sun Oct 08 2000 - 22:49:58 CDT)
  • John Duff (Sun Oct 08 2000 - 14:52:46 CDT)
  • Justin Gullingsrud (Sat Oct 07 2000 - 11:03:30 CDT)
  • John Duff (Sat Oct 07 2000 - 00:57:48 CDT)
• Problem compiling VMD 1.9.3 on macOS Catalina 10.15.3
  • Neda Rafieiolhosseini (Thu Apr 02 2020 - 03:35:16 CDT)
  • JC Gumbart (Wed Apr 01 2020 - 19:23:31 CDT)
  • Neda Rafieiolhosseini (Wed Apr 01 2020 - 03:23:13 CDT)
• problem compiling vmd from source.
  • Vermaas, Joshua (Mon Feb 19 2018 - 14:34:35 CST)
  • sperez14_at_us.es (Mon Feb 19 2018 - 13:17:11 CST)
  • Vermaas, Joshua (Sun Feb 18 2018 - 23:41:17 CST)
  • sperez14_at_us.es (Sun Feb 18 2018 - 14:10:24 CST)
• problem connecting namd/vmd using charmrun/charmd
  • Will Sheffler (Thu Jul 25 2002 - 13:58:39 CDT)
  • Will Sheffler (Thu Jul 25 2002 - 13:19:23 CDT)
• problem controlling orientation of the simulation box drawn by pbctools
  • Axel Kohlmeyer (Sun Aug 10 2008 - 11:11:34 CDT)
  • shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
• problem creating psf
  • lucie huynh (Thu Mar 29 2007 - 03:24:01 CDT)
  • John Stone (Wed Mar 28 2007 - 22:27:50 CDT)
  • lucie huynh (Wed Mar 28 2007 - 03:59:47 CDT)
  • Peter Freddolino (Tue Mar 27 2007 - 10:45:00 CDT)
  • John Stone (Tue Mar 27 2007 - 10:34:31 CDT)
  • lucie huynh (Tue Mar 27 2007 - 09:54:08 CDT)
• Problem creating tetramer from a monomer
  • Fotis Baltoumas (Fri Feb 27 2015 - 02:41:47 CST)
  • Arijit Ghosh (Thu Feb 26 2015 - 23:03:23 CST)
• problem displaying CPK
  • Misraim Enrique Gurrola Acosta (Tue Apr 08 2014 - 21:04:12 CDT)
• problem downloading VMD 1.8.6 source code
  • Lai, Massimo (Thu Sep 18 2008 - 04:21:38 CDT)
  • John Stone (Wed Sep 17 2008 - 10:40:41 CDT)
  • Lai, Massimo (Wed Sep 17 2008 - 09:59:40 CDT)
• Problem drawing cylinders with a foreach loop - TCL syntax issue.
  • Jeffrey A Tibbitt (Wed Jan 03 2018 - 03:40:39 CST)
  • Jeffrey A Tibbitt (Mon Jan 01 2018 - 20:16:26 CST)
• problem during movie making
  • gadde suneetha (Fri Mar 30 2007 - 07:44:48 CDT)
• Problem finding center of mass for all the frames
  • ramya narasimhan (Wed Dec 10 2008 - 04:45:35 CST)
  • ramya narasimhan (Wed Dec 10 2008 - 04:26:16 CST)
  • Leonardo Trabuco (Wed Dec 10 2008 - 04:34:27 CST)
  • ramya narasimhan (Wed Dec 10 2008 - 01:31:38 CST)
  • Schreiner Eduard (Wed Dec 10 2008 - 01:52:29 CST)
• Problem Fixed
  • Raymond C. Fort Jr. (Wed Oct 08 2003 - 09:26:51 CDT)
• problem for saving as jpg file
  • Esther Brugger (Wed Nov 01 2006 - 10:51:27 CST)
  • Esther Brugger (Wed Nov 01 2006 - 09:51:17 CST)
• problem for VMD extension_radial pair distribution function_truncation
  • Philippe Bopp (Fri Mar 21 2014 - 12:21:38 CDT)
  • Axel Kohlmeyer (Fri Mar 21 2014 - 11:08:28 CDT)
  • Ming-Tsung Lee (Fri Mar 21 2014 - 10:23:22 CDT)
• problem generating a psf of a solvated system using VMD
  • Leonardo Sepulveda Durán (Tue Nov 08 2005 - 18:54:18 CST)
• problem generating NAD
  • flavio seixas (Fri Dec 23 2011 - 17:42:12 CST)
  • Magnus Andersson (Fri Dec 23 2011 - 13:37:19 CST)
• problem generating psf file
  • John Stone (Wed Jul 18 2012 - 10:56:45 CDT)
  • Ginger Emel (Fri Jul 13 2012 - 11:22:50 CDT)
• Problem generating PSF file for decalanine...any help?
  • Santanu Chatterjee (Wed Sep 19 2007 - 18:24:38 CDT)
  • Santanu Chatterjee (Wed Sep 19 2007 - 18:20:58 CDT)
• Problem generating psf file in psfgen
  • John Stone (Sat Dec 19 2009 - 01:52:07 CST)
  • Ranyere Deyler (Wed Dec 16 2009 - 23:24:58 CST)
• problem in autoionize
  • bora erdemli (Fri Oct 01 2004 - 00:23:58 CDT)
  • John Stone (Thu Sep 30 2004 - 14:16:14 CDT)
  • bora erdemli (Thu Sep 30 2004 - 08:00:18 CDT)
  • Anna Modzelewska (Thu Sep 30 2004 - 04:18:38 CDT)
  • bora erdemli (Thu Sep 30 2004 - 01:38:51 CDT)
  • John Stone (Wed Sep 29 2004 - 09:37:19 CDT)
  • bora erdemli (Wed Sep 29 2004 - 08:43:05 CDT)
• Problem in buried surface area calculation
  • Josh Vermaas (Tue Aug 27 2013 - 10:34:32 CDT)
  • Joaquim Rui de Castro Rodrigues (Tue Aug 27 2013 - 10:39:46 CDT)
  • John Stone (Tue Aug 27 2013 - 10:33:21 CDT)
  • m r (Tue Aug 27 2013 - 08:35:55 CDT)
• Problem in DISPLAY of VMD from remote server in local Mac Machine
  • John Stone (Tue Feb 23 2021 - 13:42:35 CST)
  • Prathit Chatterjee (Tue Feb 23 2021 - 07:20:39 CST)
• problem in extracting frame number
  • Ajasja LjubetiÄ� (Thu Jan 13 2011 - 15:46:48 CST)
  • dhacademic (Thu Jan 13 2011 - 13:08:17 CST)
  • dhacademic (Thu Jan 13 2011 - 09:45:16 CST)
  • Eduard Schreiner (Thu Jan 13 2011 - 10:33:34 CST)
  • John Stone (Thu Jan 13 2011 - 09:53:20 CST)
• Problem in finding the HBonds
  • Axel Kohlmeyer (Wed Apr 15 2009 - 07:56:52 CDT)
  • Irene Newhouse (Wed Apr 15 2009 - 03:56:52 CDT)
  • Manishi Pandey (Wed Apr 15 2009 - 02:50:29 CDT)
• Problem in fink install netpbm for Movie Making
  • M K (Mon Dec 22 2014 - 21:19:58 CST)
  • John Stone (Wed Nov 12 2014 - 22:49:06 CST)
  • M K (Fri Nov 07 2014 - 22:55:07 CST)
• Problem in IMD with Compiled VMD
  • Amr Rizq (Wed Mar 04 2009 - 09:20:20 CST)
  • Amr Rizq (Wed Mar 04 2009 - 08:55:33 CST)
  • Axel Kohlmeyer (Wed Mar 04 2009 - 08:55:24 CST)
  • John Stone (Wed Mar 04 2009 - 08:34:37 CST)
  • Amr Rizq (Wed Mar 04 2009 - 06:00:58 CST)
• Problem in Installing the linus version of VMD
  • Nancy Singh (Thu Jul 01 2021 - 08:21:06 CDT)
• Problem in invoking VMD
  • John Stone (Mon Oct 08 2012 - 10:41:08 CDT)
  • P A Deshpande (Mon Oct 08 2012 - 10:27:00 CDT)
• problem in launching vmd
  • John Stone (Tue Jun 21 2011 - 08:57:50 CDT)
  • kaustubh joshi (Tue Jun 21 2011 - 07:21:17 CDT)
• Problem in linking (with TCL included in webpdbplugin.c)
  • John Stone (Wed Dec 07 2005 - 10:47:51 CST)
  • Do_Ba Duc (Tue Dec 06 2005 - 20:55:11 CST)
• Problem in loading data
  • Peter Freddolino (Sun May 24 2009 - 17:53:19 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 11:08:09 CDT)
  • Jae Hyun Park (Sun May 24 2009 - 10:38:24 CDT)
• problem in loading dcd file?
  • Ioana Cozmuta (Fri May 30 2003 - 19:15:14 CDT)
  • John Stone (Fri May 30 2003 - 16:02:50 CDT)
  • Ioana Cozmuta (Fri May 30 2003 - 15:56:08 CDT)
  • John Stone (Fri May 30 2003 - 10:29:32 CDT)
  • Ioana Cozmuta (Thu May 29 2003 - 19:53:40 CDT)
• Problem in loading netcdf file from LAMMPS output in VMD
  • Axel Kohlmeyer (Fri Jan 04 2019 - 12:36:22 CST)
  • John Stone (Fri Jan 04 2019 - 12:47:28 CST)
  • John Stone (Fri Jan 04 2019 - 12:10:52 CST)
  • Axel Kohlmeyer (Fri Jan 04 2019 - 11:43:06 CST)
  • John Stone (Fri Jan 04 2019 - 11:34:55 CST)
  • Axel Kohlmeyer (Tue Jan 01 2019 - 23:52:35 CST)
  • LIGESH B (Tue Jan 01 2019 - 00:05:34 CST)
• Problem in loading the trajectories
  • Soumya Lipsa Rath (Thu Jan 31 2013 - 22:35:29 CST)
• Problem in making IMD connection
  • Axel Kohlmeyer (Thu May 31 2012 - 07:14:35 CDT)
  • prakhar gupta (Thu May 31 2012 - 05:57:27 CDT)
• problem in minimization while running
  • Peter Freddolino (Thu Jun 15 2006 - 16:06:09 CDT)
  • Moumita Maiti (Thu Jun 15 2006 - 15:59:50 CDT)
• Problem in Network analysis
  • PRITI ROY (Sun Aug 04 2019 - 01:51:30 CDT)
• Problem in opening VMD on macOS Catalina
  • Mortimer Hemmit (Fri Mar 26 2021 - 13:50:17 CDT)
  • Mahsa (Wed Mar 24 2021 - 07:02:09 CDT)
• problem in overlapping atoms
  • Ajasja LjubetiÄ� (Sun May 22 2011 - 05:52:14 CDT)
  • Parul tew (Sun May 22 2011 - 05:02:18 CDT)
  • Parul tew (Sun May 22 2011 - 05:01:31 CDT)
• problem in reading .nc NETCDF FILE
  • Genform GK (Fri Sep 25 2009 - 00:21:15 CDT)
  • John Stone (Thu Sep 24 2009 - 08:18:59 CDT)
  • Genform GK (Wed Sep 23 2009 - 23:02:10 CDT)
• Problem in rendering CG bonds with VMD
  • Vermaas, Joshua (Tue Nov 12 2019 - 18:01:55 CST)
  • leila karami (Tue Nov 12 2019 - 15:18:08 CST)
• problem in saving the output
  • Axel Kohlmeyer (Tue Apr 23 2013 - 03:17:05 CDT)
  • Sindrila Dutta Banik (Tue Apr 23 2013 - 02:22:13 CDT)
• Problem in text mode
  • Axel Kohlmeyer (Thu Oct 16 2008 - 09:53:50 CDT)
  • Eric H. Lee (Thu Oct 16 2008 - 01:43:01 CDT)
  • Schreiner Eduard (Thu Oct 16 2008 - 01:47:48 CDT)
  • Schreiner Eduard (Thu Oct 16 2008 - 00:41:25 CDT)
  • Wei Huang (Thu Oct 16 2008 - 00:58:55 CDT)
  • Wei Huang (Thu Oct 16 2008 - 00:25:07 CDT)
• problem in using "Automatic PSF Builder"
  • John Stone (Mon Jan 09 2006 - 11:17:12 CST)
  • John Stone (Wed Dec 28 2005 - 14:42:36 CST)
  • Li Anbang (Tue Dec 27 2005 - 06:51:50 CST)
• problem in visualizing gaussian log file
  • John Stone (Thu Sep 14 2006 - 13:21:22 CDT)
  • dimka (Thu Sep 14 2006 - 13:13:33 CDT)
  • Francesca Mocci (Thu Sep 14 2006 - 09:26:43 CDT)
  • Jan Saam (Thu Sep 14 2006 - 08:09:09 CDT)
  • Francesca Mocci (Thu Sep 14 2006 - 05:41:51 CDT)
• Problem in VMD Big Sur
  • Sherif Arafa (Thu Feb 11 2021 - 14:41:37 CST)
• Problem installation on RedHat
  • Axel Kohlmeyer (Tue Feb 21 2006 - 01:10:52 CST)
  • Mgr. Lubos Vrbka (Tue Feb 21 2006 - 00:43:11 CST)
  • Fan,Huajun (Mon Feb 20 2006 - 21:18:32 CST)
• Problem installing on linux
  • John Stone (Fri Jul 12 2002 - 14:24:12 CDT)
  • Russell Poyner (Fri Jul 12 2002 - 12:43:03 CDT)
  • John Stone (Fri Jul 12 2002 - 11:38:09 CDT)
  • Russell Poyner (Thu Jul 11 2002 - 16:16:18 CDT)
• PROBLEM INSTALLING VMD
  • Edivaldo Rodrigues (Fri Jul 15 2022 - 13:23:10 CDT)
  • John Stone (Tue Jul 12 2022 - 17:16:21 CDT)
  • Edivaldo Rodrigues (Mon Jul 11 2022 - 06:53:09 CDT)
• Problem installing vmd in UBUNTU 10.10
  • John Stone (Sat Jan 15 2011 - 13:15:09 CST)
  • Nima Nouri (Sat Jan 15 2011 - 13:18:21 CST)
  • Nima Nouri (Sat Jan 15 2011 - 12:55:17 CST)
• Problem loading Amber trajectory
  • Axel Kohlmeyer (Sun Aug 13 2017 - 09:22:54 CDT)
  • George Tzotzos (Sun Aug 13 2017 - 08:40:50 CDT)
• problem loading dcd file
  • John Stone (Sun Oct 01 2006 - 21:36:44 CDT)
  • Peter Freddolino (Sat Sep 30 2006 - 09:15:20 CDT)
  • Shenoy, Sukesh (Fri Sep 29 2006 - 11:43:03 CDT)
• Problem loading file in VMD
  • Caitlin Hetherington (Tue Aug 10 2021 - 09:18:17 CDT)
• problem loading LAMMPS trajectory using VMD
  • Axel Kohlmeyer (Thu Sep 13 2012 - 02:23:08 CDT)
  • Li, Yanfei (Wed Sep 12 2012 - 22:50:20 CDT)
• Problem loading pdb file on VMD
  • Axel Kohlmeyer (Wed May 09 2007 - 19:21:40 CDT)
  • John Stone (Wed May 09 2007 - 17:56:18 CDT)
  • Axel Kohlmeyer (Wed May 09 2007 - 17:43:45 CDT)
  • ren (Wed May 09 2007 - 04:46:42 CDT)
  • Axel Kohlmeyer (Wed May 09 2007 - 07:38:54 CDT)
  • Axel Kohlmeyer (Wed May 09 2007 - 07:37:56 CDT)
  • Mario Valle (Wed May 09 2007 - 03:52:33 CDT)
  • John Stone (Wed May 09 2007 - 02:48:42 CDT)
  • ren (Wed May 09 2007 - 02:10:48 CDT)
• problem loading trajectory in VMD under windows XP
  • John Stone (Wed Jun 11 2008 - 01:37:58 CDT)
  • Axel Kohlmeyer (Tue Jun 10 2008 - 20:21:24 CDT)
  • Aaron.Oakley_at_csiro.au (Tue Jun 10 2008 - 18:41:24 CDT)
• Problem Material Studio/VMD
  • m.raviprasad_at_ndsu.edu (Wed Aug 11 2010 - 12:55:52 CDT)
  • Vikas Varshney (Wed Aug 11 2010 - 12:54:07 CDT)
  • Axel Kohlmeyer (Wed Aug 11 2010 - 04:26:56 CDT)
  • Ajasja LjubetiÄ� (Wed Aug 11 2010 - 03:48:44 CDT)
  • candy deck (Wed Aug 11 2010 - 01:49:55 CDT)
• problem merging two identical proteins
  • juan jesus sanchez sanchez (Wed May 18 2011 - 12:32:09 CDT)
• problem Nvidia and vmd
  • Jérôme Hénin (Mon Dec 06 2004 - 15:49:35 CST)
  • John Stone (Mon Dec 06 2004 - 11:14:26 CST)
  • Sylvain EDALEINE (Mon Dec 06 2004 - 11:02:14 CST)
• problem of calculating hydrogen bonds
  • Sasthi Charan Mandal (Sun Sep 09 2018 - 08:44:18 CDT)
  • Ashar Malik (Sun Sep 09 2018 - 03:16:05 CDT)
  • Sasthi Charan Mandal (Sun Sep 09 2018 - 02:33:25 CDT)
  • Vermaas, Joshua (Sat Sep 08 2018 - 21:45:52 CDT)
  • Sasthi Charan Mandal (Sat Sep 08 2018 - 02:19:13 CDT)
• Problem of compiling VMD with options
  • Le Liu (Wed Nov 09 2016 - 14:27:59 CST)
  • John Stone (Wed Nov 09 2016 - 14:10:23 CST)
  • Le Liu (Wed Nov 09 2016 - 13:41:00 CST)
• problem of displaying simulation box
  • ruiyan (Fri Jun 16 2017 - 12:21:42 CDT)
  • Axel Kohlmeyer (Fri Jun 16 2017 - 11:20:00 CDT)
  • ruiyan (Fri Jun 16 2017 - 10:04:30 CDT)
• problem of exceeding max atom number
  • Axel Kohlmeyer (Tue Sep 27 2011 - 13:41:45 CDT)
  • John Stone (Tue Sep 27 2011 - 13:24:22 CDT)
  • JhonY. I. (Tue Sep 27 2011 - 12:51:43 CDT)
• Problem of installing VMD 1.8.3 on Fedora14
  • Axel Kohlmeyer (Sun Jul 17 2011 - 16:52:34 CDT)
  • Tatyana Sysoeva (Sun Jul 17 2011 - 15:42:28 CDT)
• problem of installing vmd 1.8.7 on Mac osx 10.4.11
  • John Stone (Wed Feb 17 2010 - 11:55:01 CST)
  • Jane Bailey (Wed Feb 17 2010 - 11:14:55 CST)
  • Benjamin Bouvier (Wed Feb 17 2010 - 10:50:33 CST)
  • John Stone (Wed Feb 17 2010 - 09:47:58 CST)
  • Jane Bailey (Wed Feb 17 2010 - 09:35:53 CST)
• Problem of Movie Maker Plugin
  • Axel Kohlmeyer (Sat Jun 28 2008 - 11:19:02 CDT)
  • lei wang (Sat Jun 28 2008 - 05:41:29 CDT)
• problem of pbc command
  • John Stone (Mon Apr 22 2013 - 02:29:26 CDT)
  • Axel Kohlmeyer (Mon Apr 22 2013 - 02:48:33 CDT)
  • Albert (Mon Apr 22 2013 - 02:34:36 CDT)
  • Olaf Lenz (Mon Apr 22 2013 - 02:40:32 CDT)
  • Albert (Mon Apr 22 2013 - 01:39:37 CDT)
• Problem of saving .trj file in vmd
  • Sasthi Charan Mandal (Tue Oct 30 2018 - 10:01:08 CDT)
  • John Stone (Tue Oct 30 2018 - 09:16:43 CDT)
  • Vermaas, Joshua (Mon Oct 29 2018 - 09:35:18 CDT)
  • Vermaas, Joshua (Sun Oct 28 2018 - 18:01:29 CDT)
  • Sasthi Charan Mandal (Sat Oct 27 2018 - 08:00:43 CDT)
• problem of selection
  • Caio S. Souza (Wed Dec 19 2012 - 07:30:38 CST)
  • Albert (Wed Dec 19 2012 - 02:52:30 CST)
• Problem of VMD in ubuntu 14.04
  • Pawel Kedzierski (Fri Oct 23 2015 - 08:31:27 CDT)
  • Andrea Spitaleri (Fri Oct 23 2015 - 07:35:06 CDT)
  • Pawel Kedzierski (Fri Oct 23 2015 - 06:43:31 CDT)
  • Pawel Kedzierski (Fri Oct 23 2015 - 03:17:14 CDT)
  • Bonakala Satyanarayana (Fri Oct 23 2015 - 01:46:40 CDT)
• problem of VMD-1.91 in MacOS10.8
  • Albert (Sat Oct 13 2012 - 11:09:44 CDT)
• problem of x3d in chrome and IE
  • John Stone (Sun Oct 18 2015 - 16:43:36 CDT)
  • John Stone (Sun Oct 18 2015 - 16:40:36 CDT)
  • Albert (Sun Oct 18 2015 - 13:11:26 CDT)
• problem on making a movie
  • Jun Cheng (Wed Mar 16 2011 - 18:16:44 CDT)
  • John Stone (Tue Mar 15 2011 - 14:14:04 CDT)
  • Jun Cheng (Tue Mar 15 2011 - 08:42:09 CDT)
  • John Stone (Fri Mar 11 2011 - 12:37:14 CST)
  • Jun Cheng (Fri Mar 11 2011 - 12:26:13 CST)
  • John Stone (Fri Mar 11 2011 - 10:31:21 CST)
  • Jun Cheng (Fri Mar 11 2011 - 09:36:49 CST)
  • Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
  • Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
  • Jun Cheng (Fri Mar 11 2011 - 04:42:34 CST)
• Problem on merging multi-psf files into one
  • Joaquim Rui de Castro Rodrigues (Tue Oct 20 2015 - 07:24:14 CDT)
  • Axel Kohlmeyer (Tue Oct 20 2015 - 05:58:07 CDT)
  • wliu (Tue Oct 20 2015 - 00:47:12 CDT)
• problem on rmsdtt
  • masoud kazemi (Sun Apr 03 2011 - 08:52:22 CDT)
• problem reading AMBER7 parm file
  • John Stone (Wed Jul 17 2002 - 10:23:08 CDT)
  • John Stone (Wed Jul 17 2002 - 09:55:15 CDT)
  • Jeff Ames (Wed Jul 17 2002 - 01:51:49 CDT)
• Problem reading mdcrd file
  • David Gae (Sat Mar 03 2018 - 14:03:09 CST)
  • Gu, Wenze (Sat Mar 03 2018 - 10:52:29 CST)
• problem regarding stride
  • Axel Kohlmeyer (Mon Aug 13 2007 - 11:06:48 CDT)
  • aneesh cna (Mon Aug 13 2007 - 05:31:32 CDT)
  • aneesh cna (Mon Aug 13 2007 - 00:58:09 CDT)
  • Axel Kohlmeyer (Sat Aug 11 2007 - 12:51:55 CDT)
  • gurpreet singh (Sat Aug 11 2007 - 01:44:25 CDT)
• problem regarding the MC trajectory
  • Ramya Narasimhan (Sun Dec 19 2010 - 23:40:19 CST)
  • John Stone (Wed Dec 15 2010 - 16:25:24 CST)
  • Ramya Narasimhan (Wed Dec 15 2010 - 00:41:46 CST)
• problem regarding timeline
  • aneesh cna (Mon Sep 10 2007 - 10:54:01 CDT)
• problem related to generation of average structure from trajectory
  • Sindrila Dutta Banik (Tue Mar 12 2013 - 14:06:20 CDT)
• Problem related to the save trajectory
  • Bjørnar Jensen (Mon Feb 18 2013 - 04:27:33 CST)
  • Axel Kohlmeyer (Mon Feb 18 2013 - 03:44:27 CST)
  • Axel Kohlmeyer (Mon Feb 18 2013 - 02:31:13 CST)
  • Axel Kohlmeyer (Mon Feb 18 2013 - 02:15:10 CST)
  • Bjørnar Jensen (Mon Feb 18 2013 - 02:04:47 CST)
  • Ajasja LjubetiÄ� (Mon Feb 18 2013 - 01:46:49 CST)
  • Sindrila Dutta Banik (Mon Feb 18 2013 - 00:56:07 CST)
• Problem related to the save trajectory]
  • John Stone (Wed Feb 27 2013 - 10:07:46 CST)
  • Sindrila Dutta Banik (Wed Feb 27 2013 - 00:35:46 CST)
• Problem rendering NewCartoon
  • John Stone (Fri Nov 17 2006 - 13:37:26 CST)
  • John Stone (Fri Nov 17 2006 - 12:50:31 CST)
  • nunolf_at_ci.uc.pt (Fri Nov 17 2006 - 12:43:03 CST)
  • Sathyapriya R (Fri Nov 17 2006 - 12:03:52 CST)
• problem rendering NewCartoon with tachyon
  • MW Van der Kamp, School of Chemistry (Wed Jan 16 2008 - 03:09:04 CST)
  • John Stone (Tue Jan 15 2008 - 12:44:31 CST)
  • MW Van der Kamp, School of Chemistry (Tue Jan 15 2008 - 03:03:27 CST)
• problem rendering traj file with tachyon
  • John Stone (Thu Sep 15 2005 - 11:46:54 CDT)
  • Chang, Christopher (Tue Sep 13 2005 - 16:19:22 CDT)
  • Carlos Simmerling (Tue Sep 13 2005 - 10:47:03 CDT)
• Problem resolved
  • John Stone (Wed Dec 09 2020 - 16:37:25 CST)
  • Tiglath Moradkhan (Wed Dec 09 2020 - 15:33:42 CST)
• Problem running CAFE for MMPBSA using CHARMM PB Radius
  • Javier Ivan Wong Romero (Thu Oct 07 2021 - 20:38:11 CDT)
• problem running pgn script file
  • Axel Kohlmeyer (Tue Oct 03 2006 - 11:11:45 CDT)
  • Peter Freddolino (Tue Oct 03 2006 - 11:07:52 CDT)
  • Shenoy, Sukesh (Tue Oct 03 2006 - 10:37:04 CDT)
• Problem selecting atoms MacOS VMD 1.9.4a55 for MacOS X, 64-bit Intel x86 (x86_64)
  • Sergio Perez (Tue Jan 11 2022 - 10:21:12 CST)
• problem showing lammps dump files
  • Joshua D. Moore (Fri Sep 14 2012 - 13:36:44 CDT)
  • luoyuan Q (Thu Sep 13 2012 - 21:18:29 CDT)
• Problem starting VMD with Fedora Core3
  • John Stone (Fri Mar 04 2005 - 09:30:05 CST)
  • olivier Walker (Fri Mar 04 2005 - 09:10:15 CST)
• Problem to find the number of frames of a trajectory
  • John Stone (Tue Jul 22 2008 - 10:15:00 CDT)
  • John Stone (Tue Jul 22 2008 - 00:50:30 CDT)
  • David Poger (Mon Jul 21 2008 - 23:58:48 CDT)
  • John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
  • David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
• Problem to generate solvent box
  • Sindrila Dutta Banik (Fri Dec 19 2014 - 06:27:01 CST)
• Problem to launch vmd1.9.4 (v2022-04-27) in wsl linux
  • Roozbeh (Tue Mar 26 2024 - 05:09:21 CDT)
  • Roozbeh (Fri Mar 22 2024 - 20:17:28 CDT)
• problem to render .cms file
  • John Stone (Fri Aug 05 2011 - 16:12:31 CDT)
  • AB (Thu Aug 04 2011 - 02:11:34 CDT)
• Problem using BigDCD to wrap, unwrap and animate a long MD trajectory
  • KK R (Fri Jul 10 2015 - 14:51:23 CDT)
• problem using bigdcd.tcl script does not run beyond the first frame no error reported
  • Himanshu Khandelia (Mon May 07 2007 - 10:25:56 CDT)
  • Axel Kohlmeyer (Mon May 07 2007 - 08:36:50 CDT)
  • Himanshu Khandelia (Mon May 07 2007 - 04:42:10 CDT)
• Problem using ied.py
  • Jim Nettles (Fri Mar 18 2005 - 12:17:25 CST)
  • John Stone (Fri Mar 18 2005 - 12:16:30 CST)
  • John Stone (Fri Mar 18 2005 - 12:12:39 CST)
  • John Stone (Fri Mar 04 2005 - 00:58:24 CST)
  • Jim Nettles (Thu Mar 03 2005 - 16:45:44 CST)
  • John Stone (Thu Mar 03 2005 - 15:22:48 CST)
  • Stef (Tue Mar 01 2005 - 08:54:24 CST)
• problem using NAMD trajectory in charmm 32-bit, 64-bit etc. (yes, I posted this on charmm lists too)
  • Axel Kohlmeyer (Tue Apr 03 2007 - 09:20:25 CDT)
  • namd vmd (Tue Apr 03 2007 - 07:49:45 CDT)
• problem using pbc wrap
  • Axel Kohlmeyer (Tue Apr 29 2008 - 06:49:20 CDT)
  • politr_at_huji.ac.il (Tue Apr 29 2008 - 05:52:09 CDT)
• Problem using pbc wrap.....
  • Olaf Lenz (Sat Jun 27 2009 - 10:44:53 CDT)
  • Alberto Sergio Garay (Fri Jun 26 2009 - 15:01:35 CDT)
  • Olaf Lenz (Fri Jun 26 2009 - 10:06:06 CDT)
  • Alberto Sergio Garay (Fri Jun 26 2009 - 07:13:44 CDT)
• problem using pbc wrap: broken molecule
  • Axel Kohlmeyer (Fri Aug 01 2008 - 16:29:59 CDT)
  • Peter Freddolino (Fri Aug 01 2008 - 15:24:51 CDT)
  • Jianhui Tian (Fri Aug 01 2008 - 10:52:45 CDT)
  • Axel Kohlmeyer (Fri Aug 01 2008 - 10:00:18 CDT)
  • Peter Freddolino (Fri Aug 01 2008 - 10:14:47 CDT)
  • Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
• Problem using psfgen and carbohydrate charmm parameters.
  • John Stone (Mon Oct 12 2009 - 15:50:56 CDT)
  • Alexandre Suman de Araujo (Thu Oct 08 2009 - 16:19:26 CDT)
• Problem using rotate command in a script ...(2)
  • John Stone (Fri Jun 10 2011 - 09:40:45 CDT)
  • Alberto Sergio Garay (Fri Jun 10 2011 - 07:10:05 CDT)
  • Alberto Sergio Garay (Thu Jun 09 2011 - 13:11:01 CDT)
• Problem using rotate command in a script ....
  • John Stone (Thu Jun 09 2011 - 10:53:17 CDT)
  • Alberto Sergio Garay (Thu Jun 09 2011 - 09:36:33 CDT)
• Problem using rotate in a script ....
  • Alberto Sergio Garay (Wed Jun 08 2011 - 10:33:49 CDT)
• problem using saltbr plugin in text mode
  • Axel Kohlmeyer (Wed Sep 27 2006 - 14:00:28 CDT)
  • tnels_at_sfu.ca (Wed Sep 27 2006 - 13:33:43 CDT)
• Problem using topo writegmxtop
  • Vermaas, Joshua (Wed Apr 25 2018 - 17:11:42 CDT)
  • Vermaas, Joshua (Mon Apr 23 2018 - 10:51:27 CDT)
  • Vermaas, Joshua (Sat Apr 21 2018 - 13:52:20 CDT)
  • fan li (Sat Apr 21 2018 - 08:57:35 CDT)
• problem viewing cube files
  • John Stone (Fri Oct 06 2006 - 14:54:06 CDT)
  • Axel Kohlmeyer (Thu Oct 05 2006 - 10:51:17 CDT)
  • Dr. Seth Olsen (Thu Oct 05 2006 - 03:32:34 CDT)
  • Axel Kohlmeyer (Wed Oct 04 2006 - 08:26:45 CDT)
  • Dr. Seth Olsen (Tue Oct 03 2006 - 21:10:33 CDT)
• Problem visualizing a pdbqt file generated by AutoDockTools
  • Bennion, Brian (Wed Dec 02 2015 - 17:41:25 CST)
  • John Stone (Wed Dec 02 2015 - 16:51:09 CST)
  • Gustavo Seabra (Wed Nov 25 2015 - 12:27:52 CST)
  • Gustavo Seabra (Wed Nov 25 2015 - 10:41:57 CST)
  • Bennion, Brian (Wed Nov 25 2015 - 08:54:10 CST)
  • Gustavo Seabra (Wed Nov 25 2015 - 06:59:53 CST)
• Problem vmd 1.9 plus Cave
  • Christian Wohlschlager (Fri Oct 28 2011 - 04:23:30 CDT)
  • Christian Wohlschlager (Thu Oct 27 2011 - 01:12:09 CDT)
  • John Stone (Thu Oct 27 2011 - 01:29:42 CDT)
• problem vmd python
  • John Stone (Thu Jun 07 2012 - 15:13:07 CDT)
  • Tom King (Wed Jun 06 2012 - 08:20:09 CDT)
• Problem vmd1.8.5 & vmd1.8.6 on a mac-pro running ubuntu
  • ZT Yew (Tue Oct 16 2007 - 10:55:34 CDT)
  • John Stone (Tue Oct 16 2007 - 10:19:21 CDT)
  • ZT Yew (Tue Oct 16 2007 - 10:13:22 CDT)
• Problem w/ DCD Title Block When Saving - Using 'Animate Write' vs Saving Via GUI
  • Vermaas, Josh (Tue Mar 08 2022 - 14:58:18 CST)
  • Adam Gross (Tue Mar 08 2022 - 13:13:32 CST)
  • John Stone (Tue Mar 08 2022 - 12:16:36 CST)
  • Adam Gross (Tue Mar 08 2022 - 11:39:05 CST)
• problem when drawing a cylinder
  • Olaf Lenz (Fri Jun 08 2007 - 04:01:40 CDT)
  • Zhimin Xiong (Fri Jun 08 2007 - 03:27:28 CDT)
• Problem when labeling atoms on machine with intel X4500HD integreted graphic card
  • John Stone (Thu Feb 12 2009 - 15:46:21 CST)
  • Shi, Chuanyin (Thu Feb 12 2009 - 15:25:45 CST)
• Problem when loading 1QRA in QwiKMD
  • jrhau lung (Thu Sep 01 2016 - 21:48:37 CDT)
  • jrhau lung (Mon Aug 29 2016 - 19:18:27 CDT)
• Problem when rendering within a tcl loop
  • John Stone (Mon Jan 25 2021 - 23:47:58 CST)
  • John Stone (Mon Jan 11 2021 - 16:29:09 CST)
  • Arham Amouie (Sun Jan 10 2021 - 04:17:35 CST)
• Problem when using VMD Python Library
  • John Stone (Wed Dec 30 2009 - 12:46:36 CST)
  • Cun Zhang (Sun Dec 27 2009 - 08:31:04 CST)
  • Cun Zhang (Fri Dec 25 2009 - 06:03:46 CST)
• Problem while installing VMD
  • John Stone (Tue Jan 14 2014 - 11:05:04 CST)
  • Axel Kohlmeyer (Wed Dec 25 2013 - 03:02:35 CST)
  • indu purushothaman (Tue Dec 24 2013 - 01:18:38 CST)
• problem while integrating bigdcd into a namespace
  • John Stone (Thu Mar 05 2009 - 22:36:23 CST)
  • Thomas Evangelidis (Fri Feb 27 2009 - 16:19:03 CST)
• problem while running VMD
  • John Stone (Thu Apr 24 2008 - 09:20:17 CDT)
  • Regina Politi (Thu Apr 24 2008 - 03:30:19 CDT)
  • politr_at_huji.ac.il (Thu Apr 24 2008 - 03:31:22 CDT)
• Problem while using multiseq
  • amin_at_imtech.res.in (Sun Dec 25 2016 - 07:57:03 CST)
  • Lai, Jonathan (Thu Dec 22 2016 - 09:46:16 CST)
  • amin_at_imtech.res.in (Thu Dec 22 2016 - 08:01:57 CST)
• Problem While Visualising the Trajectory File from LAMMPS Simulation
  • LIGESH B (Sun Jun 02 2019 - 23:36:37 CDT)
  • Giacomo Fiorin (Sat Jun 01 2019 - 18:28:42 CDT)
  • LIGESH B (Sat Jun 01 2019 - 06:38:18 CDT)
• Problem wit solvating carbon nano-tube, psfgen) error reading atoms from psf file
  • zeynab hoseyni (Sun Feb 28 2016 - 13:22:47 CST)
  • Axel Kohlmeyer (Sun Feb 28 2016 - 11:48:58 CST)
  • zeynab hoseyni (Sun Feb 28 2016 - 11:16:58 CST)
• problem with "animate delete all"
  • Wei Chen (Mon May 10 2010 - 17:37:31 CDT)
  • John Stone (Mon May 10 2010 - 16:20:55 CDT)
  • Wei Chen (Wed May 05 2010 - 13:57:16 CDT)
  • Ajasja LjubetiÄ� (Wed May 05 2010 - 02:44:02 CDT)
  • Wei Chen (Tue May 04 2010 - 17:07:54 CDT)
• Problem with "bigdcd"
  • Leyla Celik (Thu Apr 28 2005 - 12:12:36 CDT)
  • Brian Bennion (Thu Apr 28 2005 - 12:33:59 CDT)
  • John Stone (Thu Apr 28 2005 - 09:58:49 CDT)
  • Leyla Celik (Thu Apr 28 2005 - 09:53:18 CDT)
• problem with "measure fit "
  • John Stone (Mon Feb 09 2009 - 16:41:32 CST)
  • Leontyev Igor (Tue Feb 03 2009 - 15:51:02 CST)
• problem with "within" command of VMD
  • Axel Kohlmeyer (Thu Apr 24 2008 - 08:43:19 CDT)
  • politr_at_huji.ac.il (Thu Apr 24 2008 - 08:22:23 CDT)
• problem with 'atomselect' command
  • Axel Kohlmeyer (Tue Apr 08 2014 - 13:23:22 CDT)
  • Ashish .Chauniyal (Tue Apr 08 2014 - 12:23:05 CDT)
• Problem with 'measure energy elect' command in VMD
  • Sujata Roy (Sun Dec 07 2014 - 22:26:43 CST)
  • Ashar Malik (Fri Dec 05 2014 - 00:03:26 CST)
  • Sujata Roy (Thu Dec 04 2014 - 23:17:53 CST)
• Problem with 'unwrap'
  • Sandra Rennebaum (Mon Aug 23 2010 - 03:44:34 CDT)
• problem with -args in text mode
  • Axel Kohlmeyer (Mon Sep 18 2006 - 14:19:28 CDT)
  • Axel Kohlmeyer (Fri Sep 15 2006 - 23:34:41 CDT)
  • tnels_at_sfu.ca (Fri Sep 15 2006 - 19:38:07 CDT)
• problem with 1.8.7 installation
  • Axel Kohlmeyer (Tue Aug 25 2009 - 06:43:51 CDT)
  • Barbault Florent (Tue Aug 25 2009 - 04:50:41 CDT)
• Problem with a tcl script: probable memory overload
  • Leonardo Sepulveda Durán (Mon Jan 08 2007 - 10:22:25 CST)
  • Marcos Sotomayor (Mon Jan 08 2007 - 09:53:34 CST)
  • Leonardo Sepulveda Durán (Mon Jan 08 2007 - 09:05:01 CST)
• problem with adding ions
  • João Ribeiro (Fri Apr 20 2018 - 12:57:04 CDT)
  • Olya Kravchenko (Fri Apr 20 2018 - 12:33:14 CDT)
• problem with amber 6 restart files (parm and rst)
  • Johannes von Langen (Tue Jun 11 2002 - 03:57:29 CDT)
  • Stéphane Teletchéa (Tue Jun 04 2002 - 06:39:20 CDT)
  • Raik Grunberg (Tue Jun 04 2002 - 04:08:40 CDT)
• Problem with amorphous silicon dioxide: Inorganic builder
  • Axel Kohlmeyer (Mon May 12 2014 - 03:58:17 CDT)
  • Pavan Miriyala (Mon May 12 2014 - 00:59:46 CDT)
  • Pavan Miriyala (Sun May 11 2014 - 23:37:19 CDT)
  • Axel Kohlmeyer (Sun May 11 2014 - 09:44:42 CDT)
  • Pavan Miriyala (Sun May 11 2014 - 08:53:30 CDT)
• problem with APBS pqr generation...
  • John Stone (Tue Jan 24 2006 - 11:21:16 CST)
  • Ravinder Abrol (Mon Jan 23 2006 - 20:26:17 CST)
• problem with ascribing data to the user field
  • Axel Kohlmeyer (Thu Dec 13 2012 - 06:30:54 CST)
  • Pawel Siuda (Thu Dec 13 2012 - 04:48:58 CST)
• Problem with assignation of secondary structure in VMD
  • Kevin C Chan (Thu Sep 10 2015 - 21:36:26 CDT)
  • JC Gumbart (Wed Sep 09 2015 - 10:42:18 CDT)
  • Ryan McGreevy (Wed Sep 09 2015 - 10:37:09 CDT)
  • Kevin C Chan (Tue Sep 08 2015 - 23:18:47 CDT)
  • John Stone (Fri May 08 2015 - 00:09:44 CDT)
  • Kevin C Chan (Thu May 07 2015 - 22:50:35 CDT)
  • John Stone (Thu May 07 2015 - 22:37:56 CDT)
  • Kevin C Chan (Thu May 07 2015 - 21:53:44 CDT)
  • Matic Kisovec (Wed May 06 2015 - 06:29:20 CDT)
• Problem with autoionize ?
  • Axel Kohlmeyer (Thu Apr 02 2009 - 11:46:33 CDT)
  • Kalavera_at_gmx.net (Thu Apr 02 2009 - 09:58:53 CDT)
  • Axel Kohlmeyer (Thu Apr 02 2009 - 09:25:33 CDT)
  • Kalavera_at_gmx.net (Thu Apr 02 2009 - 08:50:49 CDT)
• Problem with autoionize plugin and long atomtypes
  • Tristan Croll (Mon Aug 19 2013 - 19:53:11 CDT)
  • Thomas Albers (Wed Aug 07 2013 - 14:24:22 CDT)
  • John Stone (Wed Aug 07 2013 - 13:48:21 CDT)
  • Thomas Albers (Mon Jul 29 2013 - 15:22:49 CDT)
  • Josh Vermaas (Mon Jul 29 2013 - 12:35:01 CDT)
  • Thomas Albers (Mon Jul 29 2013 - 10:47:11 CDT)
  • Tristan Croll (Sun Jul 28 2013 - 18:54:19 CDT)
  • Thomas Albers (Sat Jul 27 2013 - 16:37:19 CDT)
• problem with autopsf
  • Peter Freddolino (Thu Feb 15 2007 - 08:20:20 CST)
  • L. Michel Espinoza-Fonseca (Thu Feb 15 2007 - 08:16:06 CST)
  • Peter Freddolino (Thu Feb 15 2007 - 08:11:49 CST)
  • L. Michel Espinoza-Fonseca (Thu Feb 15 2007 - 07:44:18 CST)
• Problem with Autopsf tool of vmd
  • Life Sciences Inc (Thu Oct 20 2016 - 08:55:53 CDT)
  • Ashar Malik (Wed Oct 19 2016 - 20:49:50 CDT)
  • Peter Freddolino (Wed Oct 19 2016 - 20:18:04 CDT)
  • Peter Freddolino (Wed Oct 19 2016 - 20:14:58 CDT)
  • Life Sciences Inc (Wed Oct 19 2016 - 17:47:53 CDT)
  • Life Sciences Inc (Wed Oct 19 2016 - 17:48:27 CDT)
  • Ashar Malik (Wed Oct 19 2016 - 17:12:33 CDT)
  • Peter Freddolino (Wed Oct 19 2016 - 14:25:49 CDT)
  • Life Sciences Inc (Wed Oct 19 2016 - 11:33:32 CDT)
  • Life Sciences Inc (Wed Oct 19 2016 - 11:13:07 CDT)
• Problem with bigdcd
  • Himanshu Khandelia (Fri Oct 19 2007 - 12:25:56 CDT)
  • Vishal Kopardé (Fri Oct 19 2007 - 11:16:25 CDT)
  • John Stone (Fri Oct 19 2007 - 11:01:24 CDT)
  • Vishal Kopardé (Fri Oct 19 2007 - 09:03:24 CDT)
• problem with bigdcd rmsd calculaton output
  • Axel Kohlmeyer (Mon May 30 2011 - 23:16:30 CDT)
  • Bian Li (Mon May 30 2011 - 22:22:48 CDT)
• Problem with biotin autopsf
  • Peter Freddolino (Fri Jan 20 2006 - 09:14:56 CST)
  • Lin (Thu Jan 19 2006 - 22:17:02 CST)
• problem with bitmap rendering
  • John Stone (Wed Jul 03 2002 - 09:24:14 CDT)
  • sjcav_at_aros.net (Wed Jul 03 2002 - 05:35:56 CDT)
• Problem with bondsrecalc
  • John Stone (Mon May 28 2007 - 15:38:50 CDT)
  • Axel Kohlmeyer (Mon May 28 2007 - 13:17:22 CDT)
  • Philippe Roche (Mon May 28 2007 - 11:29:47 CDT)
  • Philippe Roche (Mon May 28 2007 - 11:33:07 CDT)
• problem with building psf file
  • Josh Vermaas (Mon Aug 26 2013 - 15:38:04 CDT)
  • Josh Vermaas (Mon Aug 26 2013 - 12:17:44 CDT)
  • Josh Vermaas (Sun Aug 25 2013 - 16:34:44 CDT)
  • rasti (Sun Aug 25 2013 - 14:52:40 CDT)
• Problem with Calc. inter-sel. contacts
  • NICOLÃ�S DÃ�AZ ROUSSEL (Fri Apr 23 2021 - 07:12:40 CDT)
• Problem with cartoon and secondary structure
  • Francisco José Taberner Sanchis (Tue May 03 2011 - 05:13:18 CDT)
• problem with Catdcd
  • Axel Kohlmeyer (Wed Sep 12 2018 - 23:50:14 CDT)
  • Sonibare, Kolawole (Mon Sep 10 2018 - 14:13:34 CDT)
  • JC Gumbart (Sun Feb 12 2012 - 08:34:56 CST)
  • Joshua Adelman (Sun Feb 12 2012 - 08:38:22 CST)
  • Albert (Sun Feb 12 2012 - 08:24:29 CST)
  • JC Gumbart (Sun Feb 12 2012 - 08:21:18 CST)
  • Albert (Sun Feb 12 2012 - 02:23:40 CST)
• Problem with cellBasisVector 1, 2 and 3
  • Peter Freddolino (Wed Aug 23 2006 - 09:32:39 CDT)
  • Pavan Ghatty (Wed Aug 23 2006 - 08:55:04 CDT)
• Problem with CG Builder/AutoPSF extension in VMD
  • Peter Freddolino (Thu Mar 09 2017 - 07:06:56 CST)
  • Emiliano Fratini (Thu Mar 09 2017 - 05:34:41 CST)
• Problem with cionize
  • Peter Freddolino (Wed Aug 02 2017 - 22:11:31 CDT)
  • Sebastian Reiter (Wed Aug 02 2017 - 14:58:58 CDT)
  • Peter Freddolino (Wed Aug 02 2017 - 10:35:08 CDT)
  • Sebastian Reiter (Wed Aug 02 2017 - 06:00:46 CDT)
  • Peter Freddolino (Tue Aug 01 2017 - 22:01:30 CDT)
  • Sebastian Reiter (Tue Aug 01 2017 - 14:57:23 CDT)
• problem with coloring surface by electrostatic potential
  • John Stone (Wed Sep 21 2005 - 10:36:03 CDT)
  • Eugen Leitl (Wed Sep 21 2005 - 03:50:47 CDT)
  • Dallas B. Warren (Tue Sep 20 2005 - 20:54:12 CDT)
  • Dan Strahs (Tue Sep 20 2005 - 18:04:15 CDT)
  • John Stone (Tue Sep 20 2005 - 16:56:43 CDT)
  • Dan Strahs (Tue Sep 20 2005 - 16:40:09 CDT)
  • John Stone (Tue Sep 20 2005 - 14:34:02 CDT)
  • Axel Kohlmeyer (Tue Sep 20 2005 - 14:17:54 CDT)
  • John Stone (Tue Sep 20 2005 - 11:29:30 CDT)
  • Dan Strahs (Tue Sep 20 2005 - 11:13:58 CDT)
• problem with colouring the surface with electroststic potential
  • John Stone (Wed Nov 14 2007 - 11:19:27 CST)
  • John Stone (Tue Nov 13 2007 - 10:09:17 CST)
  • Axel Kohlmeyer (Tue Nov 13 2007 - 02:15:54 CST)
  • aneesh cna (Mon Nov 12 2007 - 23:15:25 CST)
• Problem with converting from lammpstrj to dcd using CatDCD
  • Zuzanna Jedlinska (Fri Jul 07 2023 - 08:54:50 CDT)
• problem with correct visualization of residues
  • L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:53:54 CDT)
  • L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:44:13 CDT)
  • Axel Kohlmeyer (Tue Jul 15 2008 - 13:39:06 CDT)
  • Axel Kohlmeyer (Tue Jul 15 2008 - 13:21:57 CDT)
  • John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
  • L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
  • L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 12:50:58 CDT)
• Problem with creating psf file from structure made by inorganic builder
  • Anneta Tzampazi (Fri Oct 03 2008 - 04:43:19 CDT)
• Problem with creation of child fragment in Molefacture
  • Peter Freddolino (Wed Apr 21 2010 - 09:51:35 CDT)
  • Yongmei Pan (Wed Apr 21 2010 - 09:15:57 CDT)
  • Alexandre Suman de Araujo (Wed Apr 21 2010 - 08:06:07 CDT)
  • Peter Freddolino (Wed Apr 21 2010 - 07:56:35 CDT)
  • Alexandre Suman de Araujo (Tue Apr 20 2010 - 20:04:05 CDT)
  • Peter Freddolino (Tue Apr 20 2010 - 18:02:23 CDT)
  • Alexandre Suman de Araujo (Tue Apr 20 2010 - 14:04:31 CDT)
• Problem with Dell Workstation
  • John Stone (Tue Nov 15 2005 - 17:51:36 CST)
  • Kamil Tamiola (Tue Nov 15 2005 - 13:42:00 CST)
• problem with density map obtained by volmap
  • Axel Kohlmeyer (Sun Sep 20 2009 - 13:44:03 CDT)
  • Ana Célia Vila Verde (Sun Sep 20 2009 - 08:01:12 CDT)
• Problem with differentiating atoms from different frames for dcd file
  • Lin (Fri Mar 24 2006 - 05:29:55 CST)
  • John Stone (Wed Mar 22 2006 - 10:23:41 CST)
  • Lin (Wed Mar 22 2006 - 10:16:44 CST)
• problem with dispdev
  • Axel Kohlmeyer (Wed May 27 2009 - 16:20:37 CDT)
  • KIRTANA S (Wed May 27 2009 - 15:59:41 CDT)
  • John Stone (Wed May 27 2009 - 16:02:38 CDT)
• Problem with display on Intel graphics card
  • Tim Travers (Wed May 26 2010 - 16:25:03 CDT)
  • Tim Travers (Wed May 26 2010 - 16:27:01 CDT)
  • John Stone (Wed May 26 2010 - 09:46:45 CDT)
  • Tim Travers (Tue May 25 2010 - 17:29:09 CDT)
• Problem with DNA bonds
  • John Stone (Mon Aug 15 2005 - 14:05:54 CDT)
  • Bob Johnson (Mon Aug 15 2005 - 13:54:28 CDT)
• problem with Dowser
  • Irene Newhouse (Wed Mar 11 2009 - 00:59:08 CDT)
  • Leonardo Trabuco (Tue Mar 10 2009 - 22:41:52 CDT)
  • Irene Newhouse (Sun Mar 08 2009 - 00:55:03 CST)
  • Axel Kohlmeyer (Sat Mar 07 2009 - 20:18:42 CST)
  • Leonardo Trabuco (Sat Mar 07 2009 - 20:07:47 CST)
  • Irene Newhouse (Sat Mar 07 2009 - 19:50:35 CST)
• problem with DPPC topology
  • Alexis Salas (Tue Mar 08 2005 - 14:29:43 CST)
• Problem with exit button
  • John Stone (Tue Nov 10 2009 - 18:41:04 CST)
  • Nuno Sousa Cerqueira (Tue Nov 10 2009 - 18:14:12 CST)
  • John Stone (Tue Nov 10 2009 - 16:33:36 CST)
  • Nuno Sousa Cerqueira (Tue Nov 10 2009 - 04:55:24 CST)
• Problem with FFTK in VMD 1.9.2
  • Mayne, Christopher G (Thu Jan 22 2015 - 09:32:41 CST)
  • Dawid das (Thu Jan 22 2015 - 07:41:31 CST)
• Problem with following NAMD tutorial
  • Tiglath Moradkhan (Fri Jan 08 2021 - 11:54:58 CST)
  • Jason Smith (Fri Jan 08 2021 - 11:39:55 CST)
  • Tiglath Moradkhan (Thu Jan 07 2021 - 23:56:24 CST)
  • Peter Freddolino (Thu Jan 07 2021 - 21:09:52 CST)
  • Tiglath Moradkhan (Thu Jan 07 2021 - 20:50:52 CST)
  • Jason Smith (Thu Jan 07 2021 - 20:19:01 CST)
  • Tiglath Moradkhan (Thu Jan 07 2021 - 19:17:22 CST)
• Problem with for loop.
  • Sara baretller (Fri Jul 08 2011 - 15:09:16 CDT)
  • Sara baretller (Fri Jul 08 2011 - 10:19:50 CDT)
  • Sara baretller (Fri Jul 08 2011 - 09:52:16 CDT)
  • Axel Kohlmeyer (Thu Jul 07 2011 - 16:59:46 CDT)
  • Sara baretller (Thu Jul 07 2011 - 16:13:03 CDT)
  • Mark Cunningham (Thu Jul 07 2011 - 09:22:27 CDT)
  • Sara baretller (Thu Jul 07 2011 - 08:08:42 CDT)
  • Mark Cunningham (Wed Jul 06 2011 - 12:34:36 CDT)
  • Axel Kohlmeyer (Wed Jul 06 2011 - 10:57:44 CDT)
  • Axel Kohlmeyer (Wed Jul 06 2011 - 10:26:10 CDT)
  • Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
  • Sara baretller (Wed Jul 06 2011 - 09:38:20 CDT)
• problem with g(r)
  • Ramin Ekhteiari (Sun Feb 10 2013 - 03:51:47 CST)
  • Ali Alizadeh (Sun Feb 10 2013 - 03:01:41 CST)
  • Jeffrey Potoff (Sat Feb 09 2013 - 19:10:54 CST)
  • Ali Alizadeh (Sat Feb 09 2013 - 08:29:46 CST)
• problem with generating movie from pdb files
  • John Stone (Mon Jan 09 2006 - 17:08:46 CST)
  • Sergey Krishtal (Thu Jan 05 2006 - 04:19:38 CST)
• Problem with generating psf and pdb files of metalloprotein made up of two fragments
  • zoran (Fri Mar 27 2015 - 06:04:37 CDT)
  • Ashar Malik (Fri Mar 27 2015 - 06:11:27 CDT)
  • zoran (Thu Mar 26 2015 - 13:45:59 CDT)
• problem with generating PSF file for guanine based molecule
  • Axel Kohlmeyer (Sun Feb 07 2010 - 14:05:19 CST)
  • Parisa Akhski (Sun Feb 07 2010 - 11:51:03 CST)
• Problem with generating psf using CGENFF
  • Bennion, Brian (Mon Apr 30 2012 - 13:26:00 CDT)
  • amin_at_imtech.res.in (Fri Apr 27 2012 - 22:46:21 CDT)
  • amin_at_imtech.res.in (Fri Apr 27 2012 - 22:35:16 CDT)
  • Bennion, Brian (Fri Apr 27 2012 - 11:57:18 CDT)
  • Ahmet Bakan (Fri Apr 27 2012 - 11:27:08 CDT)
  • Bennion, Brian (Fri Apr 27 2012 - 09:23:34 CDT)
  • amin_at_imtech.res.in (Thu Apr 26 2012 - 23:34:55 CDT)
  • Bennion, Brian (Thu Apr 26 2012 - 13:27:45 CDT)
  • amin_at_imtech.res.in (Thu Apr 26 2012 - 13:00:01 CDT)
  • Axel Kohlmeyer (Thu Apr 26 2012 - 12:41:38 CDT)
  • amin_at_imtech.res.in (Thu Apr 26 2012 - 12:26:50 CDT)
  • Chris Harrison (Thu Apr 26 2012 - 11:55:08 CDT)
  • amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
  • Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
  • amin_at_imtech.res.in (Thu Apr 26 2012 - 04:42:40 CDT)
• problem with getting started.
  • Andrew Dalke (Sun Dec 21 1997 - 11:47:00 CST)
  • Rainer Fink (Fri Dec 19 1997 - 12:32:29 CST)
• problem with gopython
  • John Stone (Tue Mar 11 2008 - 10:06:47 CDT)
  • Carolyn Phillips (Mon Mar 10 2008 - 22:32:05 CDT)
  • Peter Freddolino (Fri Mar 17 2006 - 11:42:12 CST)
  • John Stone (Fri Mar 17 2006 - 11:17:33 CST)
  • Ludovic Pétain (Fri Mar 17 2006 - 07:19:11 CST)
• Problem with Hg, H
  • Eduard Schreiner (Wed May 10 2006 - 10:41:34 CDT)
  • Christian Simon (Wed May 10 2006 - 07:40:49 CDT)
  • Younes Ansari (Wed May 10 2006 - 04:09:57 CDT)
  • Axel Kohlmeyer (Mon Feb 20 2006 - 19:13:49 CST)
  • John Stone (Mon Feb 20 2006 - 18:41:22 CST)
  • Younes Ansari (Sun Feb 19 2006 - 12:38:20 CST)
• Problem with hydration script
  • Bryan Roessler (Thu Apr 19 2012 - 15:17:35 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Apr 19 2012 - 14:23:33 CDT)
  • Bennion, Brian (Thu Apr 19 2012 - 14:32:53 CDT)
  • Bryan Roessler (Thu Apr 19 2012 - 13:17:39 CDT)
• problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory
  • Axel Kohlmeyer (Thu Mar 25 2010 - 10:49:09 CDT)
  • Knut Jørgen Bjuland (Thu Mar 25 2010 - 09:49:05 CDT)
  • Axel Kohlmeyer (Thu Mar 25 2010 - 06:01:48 CDT)
  • Knut Jørgen Bjuland (Thu Mar 25 2010 - 04:26:35 CDT)
• problem with IED on VMD 1.8.3
  • Vlad Cojocaru (Wed Mar 02 2005 - 08:51:59 CST)
• problem with IED: 'numpy.ndarray' object has no attribute 'typecode'
  • J. Rui Rodrigues (Wed Apr 07 2010 - 14:01:37 CDT)
• Problem with incomplete ring in HIS
  • Seera Suryanarayana (Mon Nov 24 2014 - 00:01:39 CST)
• Problem with instalation process
  • John Stone (Fri Jun 07 2002 - 14:30:28 CDT)
  • John Stone (Fri Jun 07 2002 - 14:08:57 CDT)
  • John Stone (Fri Jun 07 2002 - 11:42:32 CDT)
  • jrui_at_ci.uc.pt (Thu Jun 06 2002 - 19:03:09 CDT)
• Problem with Install
  • Joaquim Rui Rodrigues (Fri Jan 16 2009 - 06:59:15 CST)
  • bo baker (Fri Jan 16 2009 - 05:12:34 CST)
• problem with installation
  • John Stone (Wed Jun 07 2006 - 11:32:52 CDT)
  • John Stone (Wed Jun 07 2006 - 11:02:06 CDT)
  • Yuan Zhang (Wed Jun 07 2006 - 10:27:51 CDT)
• problem with installing OPTIX ray tracing
  • John Stone (Wed Dec 11 2019 - 08:28:34 CST)
  • Giacomo Fiorin (Tue Dec 10 2019 - 08:35:12 CST)
  • giulia palermo (Mon Dec 09 2019 - 16:33:18 CST)
• problem with installing VMD on a LINUX cluster
  • John Stone (Wed May 30 2007 - 16:34:37 CDT)
  • Yinglong Miao (Mon May 28 2007 - 22:54:54 CDT)
  • John Stone (Mon May 28 2007 - 15:43:50 CDT)
  • Axel Kohlmeyer (Fri May 25 2007 - 17:00:20 CDT)
  • Yinglong Miao (Fri May 25 2007 - 16:59:11 CDT)
• Problem with Kinetic Energy of Atomselection
  • JAVAD NOROOZI (Wed Jan 07 2015 - 00:48:34 CST)
• problem with labels
  • John Stone (Tue Apr 29 2003 - 17:53:40 CDT)
  • Lubos Vrbka (Tue Apr 29 2003 - 16:09:38 CDT)
  • John Stone (Tue Apr 29 2003 - 13:36:00 CDT)
  • John Stone (Tue Apr 29 2003 - 13:07:30 CDT)
  • Lubos Vrbka (Tue Apr 29 2003 - 08:36:05 CDT)
• problem with loading trajectories in timline plugin
  • Rogan Carr (Sun Nov 25 2007 - 16:01:54 CST)
  • John Stone (Thu Nov 22 2007 - 00:35:09 CST)
  • aneesh cna (Thu Nov 22 2007 - 00:24:00 CST)
• Problem with loop. it s not going to the next peptide
  • Axel Kohlmeyer (Fri Jul 01 2011 - 17:06:25 CDT)
  • Sara baretller (Fri Jul 01 2011 - 16:35:28 CDT)
  • Sara baretller (Fri Jul 01 2011 - 13:13:14 CDT)
• Problem with make_trajectory_movie_files script for lammps trajectory with -dispdev text
  • Axel Kohlmeyer (Fri Feb 17 2023 - 06:45:21 CST)
  • Marin Paolo Virgile Vatin (Fri Feb 17 2023 - 04:46:15 CST)
• Problem with measure bond command returning -NaN for some frames
  • Norbert Straeter (Mon Aug 29 2022 - 11:00:01 CDT)
  • Vermaas, Josh (Mon Aug 29 2022 - 08:49:37 CDT)
  • Norbert Straeter (Mon Aug 29 2022 - 07:32:17 CDT)
• problem with measure command
  • John Stone (Fri Jun 23 2006 - 11:09:00 CDT)
  • Ana Celia Araujo Vila Verde (Fri Jun 23 2006 - 11:02:14 CDT)
  • John Stone (Fri Jun 23 2006 - 10:34:03 CDT)
  • Ana Celia Araujo Vila Verde (Fri Jun 23 2006 - 10:22:49 CDT)
• Problem with measuring dihedrals
  • Jernej Zidar (Tue Sep 20 2011 - 05:28:57 CDT)
  • Axel Kohlmeyer (Tue Sep 20 2011 - 04:55:10 CDT)
  • Ajasja LjubetiÄ� (Tue Sep 20 2011 - 04:54:54 CDT)
  • Jernej Zidar (Tue Sep 20 2011 - 03:47:24 CDT)
• problem with memory
  • John Stone (Tue Sep 07 2004 - 10:05:00 CDT)
  • S.G.Falkovich (Tue Sep 07 2004 - 04:58:35 CDT)
• Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A)
  • Rangeen Othman (Thu Nov 27 2014 - 18:17:54 CST)
  • Ashar Malik (Thu Nov 27 2014 - 08:48:56 CST)
  • Axel Kohlmeyer (Thu Nov 27 2014 - 08:19:22 CST)
  • Rangeen Othman (Thu Nov 27 2014 - 06:29:08 CST)
  • Ashar Malik (Wed Nov 26 2014 - 17:02:34 CST)
  • Maxim Belkin (Wed Nov 26 2014 - 18:00:19 CST)
  • Tristan Croll (Wed Nov 26 2014 - 16:43:36 CST)
  • Rangeen Othman (Wed Nov 26 2014 - 15:32:49 CST)
  • Axel Kohlmeyer (Wed Nov 26 2014 - 15:50:09 CST)
  • Rangeen Othman (Wed Nov 26 2014 - 12:15:03 CST)
  • Axel Kohlmeyer (Wed Nov 26 2014 - 12:33:15 CST)
  • Axel Kohlmeyer (Wed Nov 26 2014 - 11:25:44 CST)
  • Axel Kohlmeyer (Wed Nov 26 2014 - 10:13:20 CST)
  • Rangeen Othman (Wed Nov 26 2014 - 09:36:57 CST)
  • Rangeen Othman (Wed Nov 26 2014 - 09:20:10 CST)
• problem with mol IDs when running script from same VMD session.
  • Ryan McGreevy (Sun Jun 03 2018 - 14:40:31 CDT)
  • Ashar Malik (Sun Jun 03 2018 - 14:29:11 CDT)
  • Rune Thomas Kidmose (Sun Jun 03 2018 - 14:02:31 CDT)
• problem with molfacture plugin 1.3
  • Peter Freddolino (Fri Oct 21 2016 - 00:24:33 CDT)
  • Peter Freddolino (Thu Oct 20 2016 - 21:25:24 CDT)
  • Peter Freddolino (Thu Oct 20 2016 - 21:38:02 CDT)
  • Raviteja Kurapati (Thu Oct 20 2016 - 14:30:00 CDT)
  • Raviteja Kurapati (Thu Oct 20 2016 - 13:29:37 CDT)
  • John Stone (Thu Oct 20 2016 - 12:42:15 CDT)
  • Peter Freddolino (Thu Oct 20 2016 - 08:43:21 CDT)
  • Raviteja Kurapati (Thu Oct 20 2016 - 07:27:34 CDT)
• problem with movie generation
  • Carlos Simmerling (Wed Apr 09 2014 - 10:31:51 CDT)
  • John Stone (Wed Apr 09 2014 - 11:47:56 CDT)
  • John Stone (Wed Apr 09 2014 - 11:39:55 CDT)
  • Carlos Simmerling (Wed Apr 09 2014 - 11:16:53 CDT)
  • Carlos Simmerling (Wed Apr 09 2014 - 11:41:42 CDT)
  • John Stone (Wed Apr 09 2014 - 10:48:46 CDT)
• Problem with Movie Maker
  • John Stone (Mon Oct 31 2011 - 09:54:03 CDT)
  • Carolyn Phillips (Sat Oct 29 2011 - 11:38:10 CDT)
  • Carolyn Phillips (Fri Oct 28 2011 - 17:41:12 CDT)
• Problem with moving protein for all frames
  • Jeffrey Potoff (Tue May 01 2012 - 19:53:12 CDT)
  • Axel Kohlmeyer (Tue May 01 2012 - 17:04:37 CDT)
  • gökçe ayþe güven (Tue May 01 2012 - 16:14:24 CDT)
• problem with MSMS and VMD
  • james tomomi macdonald (Mon Jul 05 2004 - 16:02:12 CDT)
  • John Stone (Mon Jul 05 2004 - 14:18:33 CDT)
  • james tomomi macdonald (Mon Jul 05 2004 - 11:29:29 CDT)
• Problem with N-glycosylation
  • Daniela Rivas (Wed Mar 08 2017 - 18:14:18 CST)
  • Vermaas, Joshua (Wed Mar 08 2017 - 09:54:21 CST)
  • Daniela Rivas (Tue Mar 07 2017 - 20:40:19 CST)
• Problem with NAMD, fftk and Windows 7 64bits
  • ABEL Stephane 175950 (Wed Aug 12 2015 - 08:17:26 CDT)
• problem with namdstats.tcl
  • sudipta sinha (Sun Jun 15 2008 - 01:51:11 CDT)
• Problem with namdstats.tcl in TkCon
  • luca.dallaglio2_at_studio.unibo.it (Fri Jul 13 2007 - 03:12:03 CDT)
• problem with near clip
  • John Stone (Fri Dec 01 2006 - 10:49:26 CST)
  • hkhandel_at_memphys.sdu.dk (Fri Dec 01 2006 - 09:26:29 CST)
• Problem with New cartoon representation
  • Axel Kohlmeyer (Mon Mar 01 2010 - 03:33:05 CST)
  • Carla Jamous (Mon Mar 01 2010 - 02:37:33 CST)
• problem with new plugin installation.
  • John Stone (Sat Jan 28 2012 - 11:25:14 CST)
  • Axel Kohlmeyer (Sat Jan 28 2012 - 10:33:50 CST)
  • Albert (Sat Jan 28 2012 - 08:08:16 CST)
  • Albert (Sat Jan 28 2012 - 01:18:14 CST)
• Problem With No Atoms In Selection
  • John Stone (Tue Nov 16 2010 - 15:33:50 CST)
  • David Huggins (Tue Nov 16 2010 - 14:35:20 CST)
• Problem with orient.tcl
  • Salvador H-V (Thu Sep 02 2010 - 12:59:38 CDT)
• problem with output format
  • karthik kumar (Thu Jun 11 2015 - 06:46:51 CDT)
  • Felipe Merino (Thu Jun 11 2015 - 06:50:13 CDT)
  • Mehdi Bagherpour (Thu Jun 11 2015 - 05:56:18 CDT)
• Problem with parametrization using ffTK
  • Vermaas, Joshua (Fri Jul 13 2018 - 20:43:10 CDT)
  • Ushasi Pramanik 1710228 (Thu Jul 12 2018 - 04:58:55 CDT)
• problem with pbc
  • Axel Kohlmeyer (Thu Mar 27 2008 - 07:26:05 CDT)
  • Olaf Lenz (Thu Mar 27 2008 - 06:33:42 CDT)
  • Axel Kohlmeyer (Thu Mar 27 2008 - 06:06:17 CDT)
  • Olaf Lenz (Thu Mar 27 2008 - 02:30:00 CDT)
  • Matt Watkins (Wed Mar 26 2008 - 17:07:58 CDT)
  • Axel Kohlmeyer (Wed Mar 26 2008 - 16:38:07 CDT)
  • Matt Watkins (Wed Mar 26 2008 - 16:20:55 CDT)
• problem with pbc wrap
  • Axel Kohlmeyer (Thu Jun 28 2012 - 17:09:09 CDT)
  • Dian Jiao (Thu Jun 28 2012 - 13:46:00 CDT)
• Problem with periodic condition
  • Axel Kohlmeyer (Mon Apr 30 2007 - 15:47:12 CDT)
  • Jianhui Tian (Mon Apr 30 2007 - 15:57:30 CDT)
  • Axel Kohlmeyer (Sat Apr 28 2007 - 16:15:06 CDT)
  • Olaf Lenz (Sat Apr 28 2007 - 17:14:20 CDT)
  • Charles Cleveland (Sat Apr 28 2007 - 16:02:55 CDT)
  • Olaf Lenz (Sat Apr 28 2007 - 13:27:51 CDT)
  • Axel Kohlmeyer (Fri Apr 27 2007 - 14:42:33 CDT)
  • Jianhui Tian (Fri Apr 27 2007 - 13:33:26 CDT)
• problem with polygon file conversion to pdb
  • John Stone (Fri Aug 03 2012 - 13:47:17 CDT)
  • Oliver Schmetzer (Fri Aug 03 2012 - 11:33:21 CDT)
• problem with protein RMSD calculation due to incomplete wrapping of both peptide chains
  • Maria Bagonis (Mon Nov 05 2007 - 18:23:08 CST)
  • John Stone (Thu Nov 01 2007 - 17:39:14 CDT)
  • Maria Bagonis (Thu Nov 01 2007 - 16:11:04 CDT)
• problem with psf file generation
  • Rudra Banerjee (Thu Sep 18 2008 - 03:29:07 CDT)
  • Rudra Banerjee (Thu Sep 18 2008 - 01:12:44 CDT)
• Problem with psfgen
  • Florian Mrugalla (Tue Aug 23 2011 - 10:14:24 CDT)
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:33:39 CDT)
  • Florian Mrugalla (Tue Aug 23 2011 - 07:41:02 CDT)
  • Q=C5=CC=C1=CC=CF=D7_=E9=CC=D8=D1?= (Sat Oct 03 2009 - 05:35:24 CDT)
• Problem with Psfgen 2.0 to create Drude FF .psf file for amino acid
  • zeynab hosseini (Fri Jul 30 2021 - 04:47:35 CDT)
  • zeynab hosseini (Thu Jul 29 2021 - 11:57:11 CDT)
• Problem With Psfgen again
  • Axel Kohlmeyer (Fri Jul 17 2009 - 14:37:13 CDT)
  • avl211_at_lehigh.edu (Fri Jul 17 2009 - 13:53:49 CDT)
• Problem with psfgen and Drude Polarizable Force Field
  • Roman Shevchuk (Wed Jul 04 2012 - 06:42:06 CDT)
• problem with ptch ...
  • rasti (Mon Aug 26 2013 - 15:23:34 CDT)
• Problem with QwikMD and glycans
  • João Ribeiro (Thu Jul 05 2018 - 13:28:00 CDT)
• Problem with QwikMD automatic NTER patch
  • Joao Ribeiro (Wed Apr 17 2019 - 16:59:41 CDT)
  • Pablo Alfonso Madero Ayala (Wed Apr 17 2019 - 16:45:37 CDT)
• Problem with RBCG tutorial!
  • Kirby Vandivort (Wed Aug 06 2014 - 10:06:00 CDT)
  • Rangeen Othman (Wed Aug 06 2014 - 06:30:20 CDT)
  • Rangeen Othman (Wed Aug 06 2014 - 05:21:51 CDT)
• Problem with Reading Binary ccp4 File Generated by CHARMM
  • rossi_at_york.cuny.edu (Thu Apr 05 2007 - 18:56:08 CDT)
  • Leonardo Trabuco (Thu Apr 05 2007 - 14:55:07 CDT)
  • John Stone (Thu Apr 05 2007 - 12:22:23 CDT)
  • rossi_at_york.cuny.edu (Thu Apr 05 2007 - 11:32:02 CDT)
• Problem with Reading GROMACS file in VMD
  • John Stone (Tue Jul 31 2012 - 11:23:19 CDT)
  • satya kumar (Fri Jul 27 2012 - 14:11:29 CDT)
  • satya kumar (Tue Jul 24 2012 - 11:46:07 CDT)
  • Bogdan Costescu (Tue Jul 24 2012 - 11:39:55 CDT)
  • Bogdan Costescu (Tue Jul 24 2012 - 11:42:02 CDT)
  • satya kumar (Tue Jul 24 2012 - 10:11:19 CDT)
  • Jim Kress (Tue Jul 24 2012 - 09:09:37 CDT)
  • Bogdan Costescu (Tue Jul 24 2012 - 08:19:48 CDT)
  • satya kumar (Tue Jul 24 2012 - 07:21:24 CDT)
  • Bogdan Costescu (Tue Jul 24 2012 - 07:11:04 CDT)
  • satya kumar (Tue Jul 24 2012 - 06:49:55 CDT)
  • Bogdan Costescu (Tue Jul 24 2012 - 04:02:59 CDT)
  • John Stone (Mon Jul 23 2012 - 14:12:02 CDT)
  • satya kumar (Mon Jul 23 2012 - 12:24:20 CDT)
  • Axel Kohlmeyer (Mon Jul 23 2012 - 12:42:50 CDT)
  • Axel Kohlmeyer (Sun Jul 22 2012 - 23:46:35 CDT)
  • satya kumar (Sun Jul 22 2012 - 22:06:42 CDT)
• Problem with rendering modified bond label position with Tachyon
  • John Stone (Thu Dec 31 2020 - 13:01:59 CST)
  • Antonija Tomić (Thu Dec 10 2020 - 12:38:20 CST)
• Problem with rendering proper colors in linux
  • Soumik Ghosh (Fri Dec 17 2021 - 08:21:25 CST)
• Problem with Residue Based Coarse Grain tutorial
  • Peter Freddolino (Wed Jul 29 2020 - 14:15:24 CDT)
  • Peter Freddolino (Tue Jul 28 2020 - 23:50:47 CDT)
  • Manas Kohli (Tue Jul 28 2020 - 19:21:30 CDT)
  • Peter Freddolino (Tue Jul 28 2020 - 15:01:58 CDT)
  • Manas Kohli (Tue Jul 28 2020 - 09:11:29 CDT)
  • Peter Freddolino (Mon Jul 27 2020 - 22:25:08 CDT)
  • Manas Kohli (Mon Jul 27 2020 - 04:57:59 CDT)
• problem with RMSD script
  • Justin Gullingsrud (Sun Aug 19 2001 - 18:48:02 CDT)
  • John Stone (Fri Aug 17 2001 - 14:00:10 CDT)
  • Elizabeth K. White (Wed Aug 15 2001 - 15:03:11 CDT)
• problem with rmsd-fullthrottle
  • JC Gumbart (Sat Jul 28 2007 - 15:36:02 CDT)
  • Irene Newhouse (Sat Jul 28 2007 - 15:02:54 CDT)
  • Irene Newhouse (Fri Jul 27 2007 - 15:16:54 CDT)
• Problem with running NAMD configuration file
  • John Stone (Mon Jan 11 2021 - 16:22:09 CST)
  • Tiglath Moradkhan (Mon Jan 11 2021 - 13:43:00 CST)
  • Jason Smith (Mon Jan 11 2021 - 12:50:38 CST)
  • Tiglath Moradkhan (Fri Jan 08 2021 - 18:07:43 CST)
• problem with saving changed coordinates in a new state
  • Eduard Schreiner (Thu Nov 29 2007 - 02:24:56 CST)
  • TaoJin (Wed Nov 28 2007 - 23:14:11 CST)
• Problem with saving coordinate
  • bo baker (Sun Sep 02 2007 - 20:18:13 CDT)
  • John Stone (Sat Sep 01 2007 - 21:04:16 CDT)
  • bo baker (Sat Sep 01 2007 - 18:49:57 CDT)
  • bo baker (Fri Aug 31 2007 - 01:55:26 CDT)
  • John Stone (Fri Aug 31 2007 - 02:08:30 CDT)
  • Axel Kohlmeyer (Fri Aug 31 2007 - 00:17:25 CDT)
  • bo baker (Thu Aug 30 2007 - 22:44:57 CDT)
• problem with script to get RMSD
  • Ana Celia Araujo Vila Verde (Fri Feb 17 2006 - 14:10:10 CST)
  • Ana Celia Araujo Vila Verde (Fri Feb 17 2006 - 08:41:20 CST)
  • Nuno R. L. Ferreira (Fri Feb 17 2006 - 03:50:45 CST)
  • Ana Celia Araujo Vila Verde (Thu Feb 16 2006 - 15:49:23 CST)
  • John Stone (Thu Feb 16 2006 - 13:41:21 CST)
  • Ana Celia Araujo Vila Verde (Thu Feb 16 2006 - 13:31:28 CST)
• problem with script to get RMSD-solved
  • Nuno R. L. Ferreira (Tue Feb 21 2006 - 11:41:30 CST)
  • Ana Celia Araujo Vila Verde (Tue Feb 21 2006 - 10:53:16 CST)
• problem with sidechian representation
  • jrui_at_ci.uc.pt (Mon Jan 21 2008 - 04:28:00 CST)
  • gurpreet singh (Mon Jan 21 2008 - 00:02:37 CST)
• Problem with Starting vmd after Debian System Upgrade
  • Angelo R. Rossi (Wed Jun 08 2011 - 07:27:05 CDT)
  • Axel Kohlmeyer (Tue Jun 07 2011 - 12:19:42 CDT)
  • Angelo Rossi (Tue Jun 07 2011 - 11:26:06 CDT)
• Problem with stride
  • Troy Wymore (Mon Aug 05 2002 - 13:01:58 CDT)
  • John Stone (Mon Aug 05 2002 - 12:30:56 CDT)
  • Troy Wymore (Mon Aug 05 2002 - 11:54:21 CDT)
• Problem with stride, surf and tachyon in Windows2000
  • John Stone (Fri Mar 28 2003 - 15:37:49 CST)
  • John Stone (Wed Mar 26 2003 - 13:42:54 CST)
  • J. Rui Rodrigues (Wed Mar 26 2003 - 11:47:03 CST)
• problem with superimposing two proteins
  • Dmitry Lupyan (Fri Jan 11 2008 - 15:26:38 CST)
  • Elijah Roberts (Thu Jan 10 2008 - 17:09:37 CST)
  • aneesh cna (Thu Jan 10 2008 - 05:33:21 CST)
• Problem with Surf representation in the latest version macOS Catalina
  • John Stone (Tue Apr 28 2020 - 11:42:13 CDT)
  • FX (Tue Apr 28 2020 - 11:35:09 CDT)
  • John Stone (Tue Apr 28 2020 - 11:18:49 CDT)
  • FX (Tue Apr 28 2020 - 05:07:10 CDT)
  • Neda Rafieiolhosseini (Mon Apr 27 2020 - 16:14:03 CDT)
  • John Stone (Mon Apr 27 2020 - 16:04:29 CDT)
  • Josh Vermaas (Mon Apr 27 2020 - 15:25:36 CDT)
  • Neda Rafieiolhosseini (Mon Apr 27 2020 - 12:56:54 CDT)
• Problem with tachyon
  • John Stone (Mon Jul 02 2012 - 16:38:30 CDT)
  • Fatemesadat Emami (Mon Jul 02 2012 - 16:25:43 CDT)
• problem with tcl script in text mode
  • Jerome Henin (Wed Sep 20 2006 - 14:43:29 CDT)
  • Nuno Ricardo Loureiro Ferreira (Wed Sep 20 2006 - 13:28:55 CDT)
  • tnels_at_sfu.ca (Wed Sep 20 2006 - 12:47:01 CDT)
  • tnels_at_sfu.ca (Wed Sep 20 2006 - 12:14:08 CDT)
• Problem with the Box
  • Ashar Malik (Thu Mar 18 2021 - 18:02:35 CDT)
  • Amnah Alalmaie (Thu Mar 18 2021 - 15:43:30 CDT)
• Problem with the display panel
  • John Stone (Mon Jan 12 2015 - 10:25:56 CST)
• Problem with the Graphics Command
  • Luis Rosales (Mon Mar 28 2005 - 21:23:07 CST)
  • Nitin Bhardwaj (Mon Mar 28 2005 - 18:56:16 CST)
• Problem with the move command to rotate a molecule
  • James C. Patterson (Wed Dec 08 2004 - 16:15:43 CST)
  • Nitin Bhardwaj (Wed Dec 08 2004 - 16:06:50 CST)
• problem with the new cartoon representation mode
  • OZGE ENGIN (Sat Dec 08 2007 - 16:53:51 CST)
  • Axel Kohlmeyer (Sat Dec 08 2007 - 16:08:22 CST)
  • OZGE ENGIN (Sat Dec 08 2007 - 15:36:37 CST)
  • Axel Kohlmeyer (Sat Dec 08 2007 - 14:37:00 CST)
  • OZGE ENGIN (Sat Dec 08 2007 - 13:42:12 CST)
• Problem with the script mono2poly.tcl
  • John Stone (Sun Mar 15 2009 - 14:22:19 CDT)
  • Fabio Trovato (Sat Mar 14 2009 - 04:56:17 CDT)
  • John Stone (Fri Mar 13 2009 - 12:36:37 CDT)
  • Fabio Trovato (Fri Mar 13 2009 - 11:46:44 CDT)
• problem with time line plugin in VMD
  • John Stone (Sun Jan 20 2008 - 22:55:40 CST)
  • ABEL Stephane 175950 (Fri Jan 18 2008 - 03:36:30 CST)
• problem with timeline plugin
  • John Stone (Fri Jan 25 2008 - 00:17:48 CST)
  • aneesh cna (Fri Jan 25 2008 - 00:12:17 CST)
  • aneesh cna (Mon Sep 17 2007 - 05:33:29 CDT)
• Problem with TIP3 angles during phosphorylation
  • Thierry Oscar Wambo (Fri Sep 26 2014 - 08:04:18 CDT)
• problem with tool command
  • John Stone (Wed Jun 16 2004 - 10:12:50 CDT)
  • Simon Latapie (Wed Jun 16 2004 - 09:38:26 CDT)
• Problem with topotools for residue >10k
  • Axel Kohlmeyer (Tue Jun 23 2015 - 06:43:51 CDT)
  • Kin Leung CHU (Tue Jun 23 2015 - 05:16:53 CDT)
• problem with trr file
  • John Stone (Fri Nov 22 2013 - 23:42:45 CST)
  • ALEXANDRE PERRET (Fri Nov 08 2013 - 10:35:24 CST)
  • Alexandre PERRET (Fri Nov 08 2013 - 01:43:41 CST)
  • John Stone (Fri Nov 08 2013 - 09:02:16 CST)
  • John Stone (Thu Nov 07 2013 - 14:50:18 CST)
  • Alexandre PERRET (Thu Nov 07 2013 - 09:31:15 CST)
• Problem with using bigdcd.tcl
  • jnsong (Wed Mar 23 2011 - 00:06:00 CDT)
  • Ajasja LjubetiÄ� (Mon Mar 21 2011 - 03:36:15 CDT)
  • jnsong (Sun Mar 20 2011 - 22:38:01 CDT)
  • jnsong (Tue Mar 15 2011 - 21:42:10 CDT)
• Problem with using FFKT to optimize bonded parameters
  • Mayne, Christopher G (Mon Oct 28 2013 - 08:05:37 CDT)
  • Mayne, Christopher G (Wed Oct 23 2013 - 16:51:31 CDT)
  • Mayne, Christopher G (Wed Oct 23 2013 - 12:38:41 CDT)
  • Shane O Mahony (Wed Oct 23 2013 - 10:03:37 CDT)
  • John Stone (Wed Oct 23 2013 - 09:49:42 CDT)
  • John Stone (Wed Oct 23 2013 - 10:09:02 CDT)
  • Shane O Mahony (Wed Oct 23 2013 - 09:29:46 CDT)
• problem with using parameterization tool of VMD
  • Suresh (Thu Aug 22 2013 - 08:39:06 CDT)
  • rasti (Thu Aug 22 2013 - 04:07:36 CDT)
• problem with vecsub, help with Tcl Script
  • Axel Kohlmeyer (Thu Aug 31 2006 - 12:59:32 CDT)
  • Leonardo Sepulveda Durán (Thu Aug 31 2006 - 12:25:29 CDT)
• Problem with ViewChangeRender
  • John Stone (Wed Oct 01 2014 - 13:27:59 CDT)
  • Mikhail Suyetin (Wed Oct 01 2014 - 08:20:58 CDT)
  • Mikhail Suyetin (Tue Sep 30 2014 - 09:07:18 CDT)
• problem with viewing gromacs xtc files in vmd
  • John Stone (Mon Mar 27 2006 - 10:12:51 CST)
  • Nuno R. L. Ferreira (Mon Mar 27 2006 - 09:16:54 CST)
  • hayagreevan R (Mon Mar 27 2006 - 05:30:22 CST)
• Problem with visualization of structure in amber coordinate format
  • sunyeping (Mon Jun 03 2019 - 23:32:30 CDT)
• Problem with visualizing trajectory produced in Amber
  • John Stone (Tue Jan 26 2021 - 00:24:25 CST)
  • Christopher Gaughan (Mon Jan 25 2021 - 02:05:51 CST)
• problem with vmd
  • John Stone (Sun Apr 02 2006 - 20:11:42 CDT)
  • Super Sayan (Thu Mar 30 2006 - 01:09:20 CST)
  • John Stone (Wed Mar 29 2006 - 14:26:40 CST)
  • Super Sayan (Wed Mar 29 2006 - 11:49:12 CST)
  • John Stone (Wed Mar 29 2006 - 10:05:30 CST)
  • Super Sayan (Wed Mar 29 2006 - 00:41:43 CST)
  • Shulin Zhuang (Tue Mar 28 2006 - 20:13:46 CST)
  • John Stone (Tue Mar 28 2006 - 14:06:30 CST)
  • Beniamino Sciacca (Tue Mar 28 2006 - 13:44:37 CST)
• Problem with VMD 'animate' command
  • John Stone (Tue Feb 14 2006 - 10:32:20 CST)
  • Chandra Ramananjara (Mon Feb 13 2006 - 01:37:31 CST)
  • Axel Kohlmeyer (Sun Feb 12 2006 - 20:00:46 CST)
  • John Stone (Sun Feb 12 2006 - 16:02:36 CST)
  • Chandra Ramananjara (Sun Feb 12 2006 - 10:12:36 CST)
• Problem with VMD 1.8.4 on Mac OS X 10.4.6 PPC
  • Robert Brunner (Tue Apr 25 2006 - 13:07:00 CDT)
  • John Stone (Tue Apr 25 2006 - 10:29:38 CDT)
  • Matteo Dal Peraro (Tue Apr 25 2006 - 10:22:54 CDT)
• Problem with VMD 1.8a21 under MacOS X 10.2
  • John Stone (Tue Aug 27 2002 - 12:53:55 CDT)
  • Jeffrey D. Hartgerink (Tue Aug 27 2002 - 12:32:44 CDT)
• Problem with VMD 1.9.1 (CUDA) on Snow Leopard
  • John Stone (Tue Feb 14 2012 - 11:52:24 CST)
  • Christian Mücksch (Mon Feb 13 2012 - 05:02:54 CST)
• Problem with VMD 1.9.1 and OS X 10.10 (OpenGL display freezing on reading PDB coordinates)
  • John Stone (Tue Jan 27 2015 - 12:36:31 CST)
  • John Stone (Fri Oct 31 2014 - 14:51:38 CDT)
  • John Stone (Fri Oct 31 2014 - 11:22:29 CDT)
  • Nick Fisher (Fri Oct 31 2014 - 10:51:09 CDT)
• Problem with vmd and pqr file
  • Axel Kohlmeyer (Sun Apr 18 2010 - 18:50:33 CDT)
  • Axel Kohlmeyer (Sun Apr 18 2010 - 11:14:01 CDT)
  • Knut Jørgen Bjuland (Sun Apr 18 2010 - 00:55:54 CDT)
  • Rodrigo Silveira (Sat Apr 17 2010 - 14:33:58 CDT)
  • Knut Jørgen Bjuland (Sat Apr 17 2010 - 13:51:13 CDT)
• Problem with vmd and ssh -X
  • John Stone (Fri Oct 23 2009 - 09:52:29 CDT)
  • Thomas Lemmin (Fri Oct 23 2009 - 07:22:28 CDT)
  • John Stone (Thu Oct 22 2009 - 10:58:34 CDT)
  • Thomas Lemmin (Thu Oct 22 2009 - 06:39:16 CDT)
  • Thomas Lemmin (Thu Oct 22 2009 - 02:51:44 CDT)
• Problem with VMD on linux with Xig solved
  • Russell Poyner (Wed Jul 24 2002 - 13:18:43 CDT)
• Problem with Vmd on SGI + Cavelib
  • John Stone (Wed Jul 16 2003 - 16:34:45 CDT)
  • Romaric David (Wed Jul 16 2003 - 08:22:29 CDT)
  • John Stone (Tue Jul 15 2003 - 23:33:55 CDT)
  • Romaric David (Sat Jul 12 2003 - 06:20:52 CDT)
  • John Stone (Fri Jul 11 2003 - 12:59:49 CDT)
  • Romaric David (Fri Jul 11 2003 - 06:37:10 CDT)
• Problem with VMD's depth cueing and 3DConnexion SpaceNavigator
  • Christian Mücksch (Tue Sep 17 2013 - 12:19:56 CDT)
  • John Stone (Tue Sep 17 2013 - 10:40:22 CDT)
  • Christian Mücksch (Tue Sep 10 2013 - 08:20:16 CDT)
  • Axel Kohlmeyer (Tue Sep 10 2013 - 08:03:49 CDT)
  • Christian Mücksch (Tue Sep 10 2013 - 07:11:21 CDT)
• problem with vmd/namd connection on linux
  • John Duff (Wed Apr 19 2000 - 10:25:46 CDT)
  • John Stone (Tue Apr 18 2000 - 18:49:25 CDT)
  • John Duff (Tue Apr 18 2000 - 17:35:03 CDT)
• Problem with vmdsphere.frag shader
  • Axel Kohlmeyer (Mon Aug 28 2006 - 12:32:16 CDT)
  • John Stone (Mon Aug 28 2006 - 11:58:37 CDT)
  • John Stone (Mon Aug 28 2006 - 11:44:38 CDT)
  • Mario Valle (Mon Aug 28 2006 - 09:00:52 CDT)
• Problem with wait
  • daniel aguayo (Tue Apr 25 2006 - 14:43:21 CDT)
  • John Stone (Tue Apr 25 2006 - 12:59:07 CDT)
  • daniel aguayo (Mon Apr 24 2006 - 20:39:19 CDT)
• Problem with webpdgplugin-s.o and TCL while linking
  • Do_Ba Duc (Tue Dec 06 2005 - 19:42:55 CST)
• problem with writepdb
  • Jim Phillips (Mon Oct 24 2005 - 17:33:23 CDT)
  • John Stone (Mon Oct 24 2005 - 13:10:24 CDT)
  • Chang, Christopher (Mon Oct 24 2005 - 11:15:22 CDT)
  • Samuel Flores (Mon Oct 24 2005 - 07:00:04 CDT)
  • JC Gumbart (Mon Oct 17 2005 - 19:25:49 CDT)
  • Samuel Flores (Mon Oct 17 2005 - 19:16:33 CDT)
• Problem with writepsf and CGenFF long atomtypes
  • Josh Vermaas (Thu Jun 13 2013 - 14:16:46 CDT)
  • John Stone (Thu Jun 13 2013 - 13:28:15 CDT)
  • Alexandre Suman de Araujo (Thu Jun 13 2013 - 13:25:44 CDT)
  • John Stone (Thu Jun 13 2013 - 13:12:44 CDT)
  • Alexandre Suman de Araujo (Thu Jun 13 2013 - 12:57:30 CDT)
• problem writing correct format psf file from vmd tk-console
  • John Stone (Wed Jan 17 2007 - 12:26:48 CST)
  • Himanshu Khandelia (Wed Jan 17 2007 - 05:43:06 CST)
• Problem writing trajectory to "crd" (Amber) format?
  • John Stone (Tue Jul 22 2008 - 14:01:32 CDT)
  • Axel Kohlmeyer (Wed Jul 16 2008 - 09:31:59 CDT)
  • Ian (Wed Jul 16 2008 - 04:43:24 CDT)
• problem/bug? calling hbonds within a loop over the residues (tcl)
  • Jerome Henin (Fri Dec 08 2006 - 10:08:32 CST)
  • Nels Thorsteinson (Thu Dec 07 2006 - 17:31:01 CST)
• problem/NVIDIA 3D vision/VMD/Windows 7 Pro 64-bit/GeForce GTX680
  • John Stone (Wed May 22 2013 - 11:22:03 CDT)
  • Ming-Tsung Lee (Wed May 22 2013 - 11:11:57 CDT)
  • John Stone (Wed May 22 2013 - 10:47:15 CDT)
  • Ming-Tsung Lee (Fri May 03 2013 - 20:59:37 CDT)
• Problem: I got a runtime error "CthCreate failed to create fiber!".
  • Chuck (Sun Jul 12 2009 - 03:49:44 CDT)
• Problem: VMD 1.8.7 beta 5 does not launch on AIX
  • Stanislav Polonsky (Fri Jul 24 2009 - 13:24:45 CDT)
  • Axel Kohlmeyer (Fri Jul 24 2009 - 09:22:09 CDT)
  • Stanislav Polonsky (Fri Jul 24 2009 - 08:46:05 CDT)
• Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer
  • Stanislav Polonsky (Thu Jul 23 2009 - 16:42:37 CDT)
  • John Stone (Thu Jul 23 2009 - 12:49:24 CDT)
  • Axel Kohlmeyer (Thu Jul 23 2009 - 12:29:49 CDT)
  • Stanislav Polonsky (Thu Jul 23 2009 - 12:21:14 CDT)
  • Axel Kohlmeyer (Thu Jul 23 2009 - 11:23:34 CDT)
  • Stanislav Polonsky (Thu Jul 23 2009 - 10:39:36 CDT)
  • Stanislav Polonsky (Mon Jul 20 2009 - 16:19:05 CDT)
  • Axel Kohlmeyer (Mon Jul 20 2009 - 15:43:56 CDT)
  • Stanislav Polonsky (Mon Jul 20 2009 - 13:16:31 CDT)
  • John Stone (Mon Jul 20 2009 - 11:43:38 CDT)
  • Axel Kohlmeyer (Mon Jul 20 2009 - 11:36:28 CDT)
  • Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
  • John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
  • Stanislav Polonsky (Mon Jul 20 2009 - 11:04:25 CDT)
• problem_1
  • vivek sharma (Sat Oct 09 2004 - 01:16:55 CDT)
• problems about atoms display in certain region
  • sunnytov (Thu Jul 18 2013 - 01:07:21 CDT)
  • Axel Kohlmeyer (Wed Jul 17 2013 - 23:04:53 CDT)
• Problems after installation (ubuntu 8.04)
  • Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:08:35 CDT)
  • John Stone (Tue Oct 07 2008 - 12:05:17 CDT)
  • Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:03:16 CDT)
  • John Stone (Tue Oct 07 2008 - 11:46:41 CDT)
  • Anirban Ghosh (Sat Oct 04 2008 - 13:04:09 CDT)
  • Alexander A. Vakhrushev (Fri Oct 03 2008 - 22:55:52 CDT)
  • Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
  • John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
  • Alexander A. Vakhrushev (Fri Oct 03 2008 - 08:43:39 CDT)
  • Tomek Wlodarski (Fri Oct 03 2008 - 07:23:25 CDT)
• problems aligning two simillar structures
  • Boris Steipe (Tue Mar 26 2013 - 20:07:40 CDT)
  • John Stone (Tue Mar 26 2013 - 17:39:30 CDT)
  • Yarrow Madrona (Tue Mar 26 2013 - 17:38:11 CDT)
  • Yarrow Madrona (Tue Mar 26 2013 - 17:35:44 CDT)
  • Ishwar Hosamani (Tue Mar 26 2013 - 16:21:43 CDT)
  • John Stone (Tue Mar 26 2013 - 14:59:27 CDT)
  • Josh Vermaas (Tue Mar 26 2013 - 15:16:46 CDT)
  • Yarrow Madrona (Tue Mar 26 2013 - 14:19:48 CDT)
  • Yarrow Madrona (Tue Mar 26 2013 - 14:10:38 CDT)
• problems compiling vmd (1.8.1)
  • John Stone (Mon Aug 04 2003 - 14:34:24 CDT)
• problems displaying newcartoon representation
  • Joseph Bylund (Thu Nov 12 2009 - 12:43:24 CST)
  • Axel Kohlmeyer (Thu Nov 12 2009 - 12:09:16 CST)
  • John Stone (Thu Nov 12 2009 - 12:24:42 CST)
  • Robert Meklemburg (Thu Nov 12 2009 - 11:17:19 CST)
• Problems generating movies for vmd 1.9.4a53
  • Diego Gomes (Mon Mar 04 2024 - 13:23:46 CST)
  • Kung, Ryan (Sat Mar 02 2024 - 11:35:49 CST)
  • Diego Gomes (Thu Feb 29 2024 - 17:09:42 CST)
  • Kung, Ryan (Thu Feb 29 2024 - 09:54:53 CST)
• Problems in running AutoIMD
  • Jim Phillips (Tue May 19 2015 - 15:18:08 CDT)
  • Jim Phillips (Mon May 18 2015 - 10:32:20 CDT)
  • Ern Seang Ong (Sun May 17 2015 - 20:24:46 CDT)
  • John Stone (Wed May 13 2015 - 15:39:17 CDT)
  • Ern Seang Ong (Sat May 09 2015 - 00:08:44 CDT)
  • John Stone (Thu May 07 2015 - 23:12:40 CDT)
  • Ern Seang Ong (Fri May 01 2015 - 00:49:39 CDT)
• Problems in setting up low pH systems
  • Axel Kohlmeyer (Wed Jan 11 2012 - 21:26:28 CST)
  • Sheng, Zi-Zhang (Wed Jan 11 2012 - 20:26:49 CST)
  • Sheng, Zi-Zhang (Wed Jan 11 2012 - 10:03:10 CST)
• problems loading dcd files
  • John Stone (Thu Jul 15 2004 - 13:58:24 CDT)
  • Patti Schaefer (Thu Jul 15 2004 - 13:55:18 CDT)
• Problems loading shared object, vmd1.8 linux mesa binaries
  • Christopher D. Wassman (Tue Feb 25 2003 - 01:49:09 CST)
  • John Stone (Mon Feb 24 2003 - 11:28:14 CST)
  • Christopher D. Wassman (Sun Feb 23 2003 - 21:59:24 CST)
• Problems MacOS Big Sur
  • Sergio Perez (Tue Apr 20 2021 - 02:01:26 CDT)
  • Sergio Perez (Wed Mar 17 2021 - 02:31:34 CDT)
  • John Stone (Wed Mar 17 2021 - 00:30:40 CDT)
  • Sergio Perez (Mon Mar 15 2021 - 02:06:51 CDT)
  • Sergio Perez (Fri Mar 05 2021 - 02:13:18 CST)
• Problems of generating the psf file with a protein that has a structural calcium
  • João Ribeiro (Thu Apr 06 2017 - 19:13:34 CDT)
  • João Ribeiro (Thu Apr 06 2017 - 18:44:37 CDT)
  • Guanyu Wang (Thu Apr 06 2017 - 17:46:24 CDT)
• Problems Opening Large .dx File
  • John Stone (Wed Oct 17 2007 - 17:28:37 CDT)
  • Corenflos, Steven Charles (Wed Oct 17 2007 - 17:09:54 CDT)
  • Axel Kohlmeyer (Mon Oct 15 2007 - 15:56:28 CDT)
  • John Stone (Mon Oct 15 2007 - 15:26:55 CDT)
  • Corenflos, Steven Charles (Mon Oct 15 2007 - 11:30:04 CDT)
• problems reading rst file as amber7 restart with VMD 1.9.3
  • Vermaas, Joshua (Fri Oct 20 2017 - 15:14:39 CDT)
  • Vermaas, Joshua (Fri Oct 20 2017 - 14:43:09 CDT)
  • Capponi, Sara (Fri Oct 20 2017 - 12:27:48 CDT)
• Problems running APBS
  • John Stone (Tue Mar 13 2007 - 14:32:22 CDT)
  • John Stone (Tue Mar 13 2007 - 13:44:45 CDT)
  • Per Jr. Greisen (Tue Mar 13 2007 - 13:32:04 CDT)
• Problems running VMD-CUDA with GNU-Linux
  • Francesco Pietra (Tue Aug 02 2011 - 16:52:01 CDT)
• problems to launch VMD 1.83 in MAC os x tiger
  • Robert Brunner (Fri Jul 08 2005 - 15:17:02 CDT)
  • John Stone (Fri Jul 08 2005 - 12:48:39 CDT)
  • Miguel Valvano (Fri Jul 08 2005 - 11:20:35 CDT)
• Problems to load Gaussian .log file in Paratool
  • Jan Saam (Tue Jul 31 2007 - 11:05:34 CDT)
  • Alexandre Suman de Araujo (Mon Jul 30 2007 - 13:05:56 CDT)
• Problems uploading new molecule
  • Daniel.Mulvihill (Wed Sep 11 2013 - 10:26:55 CDT)
  • John Stone (Wed Sep 11 2013 - 08:48:13 CDT)
  • Axel Kohlmeyer (Wed Sep 11 2013 - 05:20:36 CDT)
  • Daniel.Mulvihill (Wed Sep 11 2013 - 05:11:56 CDT)
  • Axel Kohlmeyer (Wed Sep 11 2013 - 04:02:51 CDT)
  • Daniel.Mulvihill (Tue Sep 10 2013 - 10:22:20 CDT)
• Problems when using specden package in VMD
  • John Stone (Thu Aug 01 2013 - 09:49:49 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 02:19:44 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 01:36:01 CDT)
  • Axel Kohlmeyer (Thu Aug 01 2013 - 01:59:16 CDT)
  • Mingchao Wang (Thu Aug 01 2013 - 00:19:16 CDT)
• Problems with "animate next" inside for-loops
  • Axel Kohlmeyer (Wed Mar 10 2010 - 17:23:04 CST)
  • nicholas lee (Wed Mar 10 2010 - 16:41:45 CST)
• Problems with a multiple orbital cube file
  • Axel Kohlmeyer (Fri Sep 14 2007 - 07:32:14 CDT)
  • Dr. Seth Olsen (Fri Sep 14 2007 - 01:49:38 CDT)
• problems with a script
  • John Stone (Fri Jan 25 2008 - 00:15:14 CST)
  • Irene Newhouse (Thu Jan 24 2008 - 16:39:40 CST)
• problems with ADP vanadate
  • Daniel Kennedy (Sun Sep 16 2007 - 11:12:09 CDT)
• Problems with AMBER trajectories (MOVIE!) and crd-files
  • Axel Kohlmeyer (Tue Aug 30 2005 - 13:43:29 CDT)
  • John Stone (Tue Aug 30 2005 - 10:15:22 CDT)
  • Matthias Negri (Tue Aug 30 2005 - 06:53:28 CDT)
  • John Stone (Mon Aug 29 2005 - 09:43:30 CDT)
  • Matthias Negri (Mon Aug 29 2005 - 04:19:19 CDT)
• Problems with analysis tools
  • Axel Kohlmeyer (Wed Jun 13 2012 - 08:11:41 CDT)
  • Axel Kohlmeyer (Wed Jun 13 2012 - 08:08:17 CDT)
  • INPE (Ingrid Viveka Pettersson) (Wed Jun 13 2012 - 07:05:30 CDT)
• Problems with APBS calculations
  • Ramon Garduno-Juarez (Fri May 20 2011 - 12:18:48 CDT)
  • Chris Harrison (Thu May 19 2011 - 21:37:36 CDT)
  • Ramon Garduno-Juarez (Thu May 19 2011 - 20:51:53 CDT)
• Problems with APBS Compatibility
  • John Stone (Fri Jun 02 2006 - 13:40:55 CDT)
  • Vyom Sharma (Thu Jun 01 2006 - 21:19:19 CDT)
  • John Stone (Thu Jun 01 2006 - 18:01:15 CDT)
  • Vyom Sharma (Thu Jun 01 2006 - 17:34:04 CDT)
• problems with atomselect: missing selection
  • Axel Kohlmeyer (Mon Nov 12 2007 - 06:38:01 CST)
  • Philipp Schön (Mon Nov 12 2007 - 05:23:32 CST)
• problems with Autoimd on mac os x ( panther )
  • Mike McCallum (Thu Apr 29 2004 - 22:02:26 CDT)
  • Arieana Moore (Thu Apr 29 2004 - 19:02:09 CDT)
• problems with autoionize
  • John Stone (Thu Aug 24 2006 - 21:52:35 CDT)
  • L. Michel Espinoza-Fonseca (Thu Aug 24 2006 - 13:17:30 CDT)
  • Peter Freddolino (Tue Aug 22 2006 - 22:54:31 CDT)
  • John Stone (Tue Aug 22 2006 - 21:48:24 CDT)
  • L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 21:18:06 CDT)
  • John Stone (Tue Aug 22 2006 - 20:56:03 CDT)
  • L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 19:16:29 CDT)
  • John Stone (Tue Aug 22 2006 - 19:02:12 CDT)
  • Axel Kohlmeyer (Tue Aug 22 2006 - 18:10:54 CDT)
  • L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 17:55:02 CDT)
  • John Stone (Tue Aug 22 2006 - 17:45:34 CDT)
  • L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 17:36:39 CDT)
• problems with autopsf & psfgen
  • JC Gumbart (Fri Sep 12 2008 - 02:51:03 CDT)
  • Irene Newhouse (Tue Sep 09 2008 - 13:50:10 CDT)
• problems with CG protein-lipidbilayer-water system
  • Anton Arkhipov (Mon Nov 23 2009 - 00:51:43 CST)
  • Francesco Pietra (Sun Nov 22 2009 - 15:32:18 CST)
  • Axel Kohlmeyer (Sat Nov 21 2009 - 16:54:04 CST)
  • Francesco Pietra (Sat Nov 21 2009 - 12:00:54 CST)
• Problems with CGenFF and oxetane ring
  • Francesco Pietra (Tue Oct 23 2018 - 11:04:27 CDT)
• Problems with Charmm dcd
  • John Stone (Wed Oct 27 1999 - 09:23:35 CDT)
  • Guy Coates (Wed Oct 27 1999 - 07:24:17 CDT)
• Problems with charmm36 modified nucleotides for psfgen and namd
  • Francesco Pietra (Thu Jan 20 2022 - 08:26:48 CST)
• Problems with color
  • John Stone (Mon Nov 11 2002 - 10:07:57 CST)
  • #WONG CHEE HOW# (Mon Nov 11 2002 - 09:52:17 CST)
• Problems with external Tachyon Renderer
  • Axel Kohlmeyer (Sat Nov 02 2013 - 01:21:02 CDT)
  • Bryan Roessler (Fri Nov 01 2013 - 21:02:34 CDT)
• Problems with for loop
  • John Stone (Tue Apr 10 2012 - 14:15:07 CDT)
  • Andrés Morales (Tue Apr 10 2012 - 11:43:10 CDT)
• Problems with GLUP and ASPP with CHARMM36
  • Francesco Pietra (Fri Dec 11 2015 - 05:07:03 CST)
• Problems with graphics.color function under VMD's python interpreter
  • John Stone (Fri Feb 13 2004 - 17:43:27 CST)
  • Manuel Melle-Franco (Tue Jan 20 2004 - 10:20:55 CST)
• problems with hotkeys and "user add key" command
  • John Stone (Mon Apr 05 2010 - 16:45:53 CDT)
  • Rocchia Walter (Mon Apr 05 2010 - 16:31:03 CDT)
• problems with in text mode towards pdf and pdb files
  • Francesco Pietra (Fri Nov 21 2014 - 09:09:52 CST)
• Problems with large solvation boxes
  • Juan R. Perilla (Thu Nov 21 2013 - 17:12:21 CST)
  • John Stone (Fri Nov 15 2013 - 16:17:25 CST)
  • Josh Vermaas (Mon Nov 11 2013 - 15:55:34 CST)
  • John Grime (Mon Nov 11 2013 - 09:04:24 CST)
• problems with large structures
  • John Stone (Fri Dec 01 2006 - 10:30:29 CST)
  • hkhandel_at_memphys.sdu.dk (Fri Dec 01 2006 - 09:24:57 CST)
• Problems with licorice representation when rendering 3D PDF for Power Point
  • John Stone (Fri Apr 23 2010 - 12:54:49 CDT)
  • Bob Johnson (Fri Apr 23 2010 - 09:59:08 CDT)
  • John Stone (Thu Apr 22 2010 - 17:22:33 CDT)
  • Bob Johnson (Thu Apr 22 2010 - 14:56:52 CDT)
• problems with ligands
  • Scazzocchio, Claudio (Thu Apr 14 2016 - 06:12:42 CDT)
  • Cesar Millan (Thu Apr 14 2016 - 06:02:29 CDT)
  • Scazzocchio, Claudio (Thu Apr 14 2016 - 05:29:16 CDT)
• Problems with Linux install...
  • Axel Kohlmeyer (Wed Jun 09 2010 - 21:26:53 CDT)
  • Luis Guillermo Cota Preciado (Wed Jun 09 2010 - 18:35:18 CDT)
  • John Stone (Wed Jun 09 2010 - 16:17:18 CDT)
  • Luis Guillermo Cota Preciado (Mon Jun 07 2010 - 00:17:58 CDT)
  • John Stone (Fri Jun 04 2010 - 16:19:09 CDT)
  • Axel Kohlmeyer (Fri Jun 04 2010 - 14:18:40 CDT)
  • Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 13:30:30 CDT)
  • Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 10:19:01 CDT)
  • John Stone (Fri Jun 04 2010 - 08:37:54 CDT)
  • Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 02:32:23 CDT)
• Problems with Mac OSX VMD and certain PDB files
  • John Stone (Wed Nov 24 2004 - 13:26:50 CST)
  • bozell, joe (Wed Nov 24 2004 - 12:34:47 CST)
• problems with manipulating control switches on VMS main menu
  • John Stone (Thu Oct 30 2008 - 02:13:11 CDT)
  • Piotr Cieplak (Wed Oct 29 2008 - 19:52:24 CDT)
• problems with MDenergy
  • Irene Newhouse (Wed Jan 30 2008 - 15:06:49 CST)
• problems with MDFF
  • Gregorio Fernandez (Mon Apr 09 2012 - 06:21:33 CDT)
  • Gregorio Fernandez (Fri Apr 06 2012 - 02:42:22 CDT)
• Problems with MDFF tutorial
  • Ryan McGreevy (Thu Jun 27 2013 - 12:41:52 CDT)
  • Catalin Buiu (Thu Jun 27 2013 - 12:44:36 CDT)
  • Catalin Buiu (Wed Jun 26 2013 - 11:28:46 CDT)
  • Ryan McGreevy (Wed Jun 26 2013 - 11:00:40 CDT)
  • Catalin Buiu (Tue Jun 25 2013 - 16:27:02 CDT)
• Problems with mouse programming in VMD
  • John Stone (Sun Apr 30 2006 - 09:16:26 CDT)
  • Chang Hu (Sun Apr 30 2006 - 01:03:07 CDT)
  • John Stone (Sat Apr 29 2006 - 22:50:11 CDT)
  • Chang Hu (Sat Apr 29 2006 - 21:05:37 CDT)
  • John Stone (Thu Apr 27 2006 - 12:45:44 CDT)
  • Chang Hu (Thu Apr 27 2006 - 12:36:23 CDT)
  • John Stone (Thu Apr 27 2006 - 11:52:55 CDT)
  • Chang Hu (Wed Apr 26 2006 - 23:19:57 CDT)
• problems with MSMS
  • John Stone (Sat Aug 15 1998 - 22:00:51 CDT)
  • Patric Beuthen (Fri Jun 26 1998 - 08:38:12 CDT)
• Problems with NewCartoon Cartoon Representations
  • Peter Freddolino (Tue Jan 06 2009 - 19:48:47 CST)
  • haosheng_at_hec.utah.edu (Tue Jan 06 2009 - 15:39:43 CST)
• Problems with Newcartoon representation
  • Cesar Luis Avila (Wed Aug 06 2008 - 14:28:00 CDT)
  • John Stone (Wed Aug 06 2008 - 13:38:00 CDT)
  • Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
  • John Stone (Wed Aug 06 2008 - 11:33:28 CDT)
• problems with OSX 64-bit installation
  • Charlie Mcdowell (Mon Aug 15 2022 - 23:05:09 CDT)
• Problems with PDB file format in VMD
  • Axel Kohlmeyer (Thu Mar 27 2008 - 20:42:45 CDT)
  • cong chen (Thu Mar 27 2008 - 18:55:38 CDT)
• Problems with povray
  • Luis Rosales (Tue Oct 26 2004 - 15:11:53 CDT)
  • John Stone (Tue Oct 26 2004 - 15:20:48 CDT)
  • John Stone (Mon Oct 25 2004 - 14:01:21 CDT)
  • Luis Rosales (Mon Oct 25 2004 - 13:47:59 CDT)
  • John Stone (Mon Oct 25 2004 - 13:15:43 CDT)
  • Dominique Vlieghe (Mon Oct 25 2004 - 07:13:11 CDT)
• Problems with Psf using Charmm format, solvate and autoionize
  • Jim Phillips (Thu Jun 09 2005 - 14:02:18 CDT)
  • Chang, Christopher (Wed Jun 08 2005 - 15:12:41 CDT)
  • Leonardo Sepulveda Durán (Wed Jun 08 2005 - 12:55:21 CDT)
• Problems with PSFGEN
  • Dave Arias (NelsonDa) (Mon Feb 27 2012 - 13:18:07 CST)
  • Axel Kohlmeyer (Thu Jul 16 2009 - 17:30:59 CDT)
  • avl211_at_lehigh.edu (Thu Jul 16 2009 - 16:06:31 CDT)
• Problems with PSFGEN in Simulation of Water Permeation through nanotubes
  • David L. Azevedo (Fri Sep 24 2004 - 08:52:13 CDT)
• Problems with QwickMD plugin
  • Rafael Bernardi (Tue Dec 08 2020 - 23:05:56 CST)
  • Tiglath Moradkhan (Tue Dec 08 2020 - 16:23:48 CST)
• Problems with reading Amber NetCDF restart files
  • John Stone (Thu Nov 13 2014 - 11:43:28 CST)
  • Giuseppe La Rosa (Fri Nov 07 2014 - 07:51:26 CST)
• Problems with rendering with POV-Ray
  • John Stone (Fri Jan 04 2019 - 13:10:53 CST)
  • Oliver Sørensen Siig (Sat Dec 22 2018 - 07:12:41 CST)
• Problems with RMSD
  • John Stone (Mon Mar 08 2004 - 17:31:26 CST)
  • Maik Götte (Mon Mar 08 2004 - 09:20:56 CST)
• Problems with S-Adenosyl-L-Methionine / SAM Topology & Parameter for MD simulations
  • Daan Mevius (Tue Oct 13 2015 - 09:23:50 CDT)
  • Pawel Kedzierski (Sun Oct 11 2015 - 08:33:33 CDT)
  • Daan Mevius (Sun Oct 11 2015 - 06:20:19 CDT)
• Problems with selecting atoms for representations
  • Axel Kohlmeyer (Tue Oct 13 2009 - 11:29:09 CDT)
  • Joseph Bylund (Tue Oct 13 2009 - 10:39:52 CDT)
• Problems with Spaceball 4000FLX
  • John Stone (Thu Feb 02 2006 - 17:31:45 CST)
  • Pietro Amodeo (Thu Feb 02 2006 - 15:04:58 CST)
• problems with stereo display on NVIDIA Quadro4 750 XGL
  • Karsten Suhre (Tue Jan 14 2003 - 02:12:49 CST)
• problems with stereo display on NVIDIA Quadro4 750 XGL]
  • John Stone (Tue Jan 14 2003 - 13:07:58 CST)
• Problems with Stride
  • John Stone (Mon Oct 05 2009 - 21:08:57 CDT)
  • Martin K. Jones (Fri Oct 02 2009 - 17:00:12 CDT)
  • John Stone (Fri Oct 02 2009 - 16:22:26 CDT)
  • John Stone (Fri Oct 02 2009 - 16:24:48 CDT)
  • Martin K. Jones (Fri Oct 02 2009 - 13:16:54 CDT)
  • Axel Kohlmeyer (Fri Oct 02 2009 - 13:06:45 CDT)
  • Martin K. Jones (Fri Oct 02 2009 - 12:18:41 CDT)
• problems with tachyon
  • Josh Vermaas (Fri Sep 12 2014 - 09:01:12 CDT)
  • John Stone (Fri Sep 12 2014 - 08:08:12 CDT)
  • David Muramatsu (Fri Sep 12 2014 - 04:46:39 CDT)
• Problems with tcl/tk 8.5
  • Axel Kohlmeyer (Tue Jan 20 2009 - 08:53:02 CST)
  • John Stone (Tue Jan 20 2009 - 08:51:08 CST)
  • Bernd Doser (Tue Jan 20 2009 - 02:08:05 CST)
• Problems with Terminal and 1.8.4.a22 under OSX (Tiger 10.4.3)
  • John Stone (Tue Nov 08 2005 - 10:04:01 CST)
  • kamilt_at_ibmb.uni.wroc.pl (Sun Nov 06 2005 - 16:08:34 CST)
• problems with the Surf...
  • John Stone (Fri Mar 14 2003 - 11:09:15 CST)
  • Lubos Vrbka (Thu Mar 06 2003 - 10:36:08 CST)
  • John Stone (Thu Mar 06 2003 - 10:18:30 CST)
  • John Stone (Thu Mar 06 2003 - 10:07:23 CST)
  • Lubos Vrbka (Thu Mar 06 2003 - 10:00:38 CST)
• problems with vecdist in accepting variables
  • John Stone (Tue Sep 21 2004 - 16:40:26 CDT)
  • Jerry Ebalunode (Tue Sep 21 2004 - 11:27:15 CDT)
  • Justin Gullingsrud (Tue Sep 21 2004 - 12:43:23 CDT)
  • Jerry Ebalunode (Tue Sep 21 2004 - 04:38:01 CDT)
• Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux
  • John Stone (Thu Jun 29 2000 - 15:12:53 CDT)
  • Miguel Teodoro (Thu Jun 29 2000 - 11:37:34 CDT)
  • John Stone (Mon Jun 26 2000 - 15:57:45 CDT)
  • Miguel Teodoro (Tue Jun 13 2000 - 18:39:48 CDT)
• Problems with VMD in Federa 4 (x86_64)
  • John Stone (Sat Aug 27 2005 - 22:30:18 CDT)
  • Adrian turjanski (Sat Aug 27 2005 - 17:22:00 CDT)
• Problems with VMD installation Fedora 12 64bits
  • John Stone (Sat Mar 13 2010 - 08:50:37 CST)
  • Edith Euan (Sat Mar 13 2010 - 00:57:39 CST)
• Problems with vmd plugin namdenergy output
  • sunyeping (Wed Nov 04 2015 - 05:11:10 CST)
  • Axel Kohlmeyer (Mon Nov 02 2015 - 10:51:24 CST)
  • John Stone (Mon Nov 02 2015 - 10:32:27 CST)
  • sunyeping (Mon Nov 02 2015 - 05:54:58 CST)
  • Fotis Baltoumas (Mon Nov 02 2015 - 04:48:11 CST)
  • sunyeping (Mon Nov 02 2015 - 03:06:32 CST)
• Problems with vmd under Linux
  • Simon Hogg (Thu Jul 31 1997 - 05:53:01 CDT)
• problems with VMD under linux/64-bit machine
  • John Stone (Fri Sep 12 2008 - 16:03:48 CDT)
  • Irene Newhouse (Fri Sep 12 2008 - 15:17:56 CDT)
• Problems with ‘Surf’ as a “Drawing methodâ€� for protein in VMD installed to a local folder
  • Diego Gomes (Thu Apr 11 2024 - 12:56:15 CDT)
  • Dmitry Suplatov (Thu Apr 11 2024 - 12:02:22 CDT)
  • Diego Gomes (Thu Apr 11 2024 - 11:38:36 CDT)
  • Diego Gomes (Thu Apr 11 2024 - 10:14:05 CDT)
  • Dmitry Suplatov (Thu Apr 11 2024 - 08:04:45 CDT)
• problems wrapping waters using PBC tools
  • Olaf Lenz (Tue Jul 30 2013 - 03:43:42 CDT)
  • Markus Dahlgren (Mon Jul 29 2013 - 10:02:46 CDT)
• Problems_calling_VMD_remotely_from_cluster
  • Payal Chatterjee (Tue Sep 29 2015 - 11:15:12 CDT)
  • Andrea Spitaleri (Tue Sep 29 2015 - 10:58:41 CDT)
  • John Stone (Tue Sep 29 2015 - 10:23:30 CDT)
  • Payal Chatterjee (Fri Sep 25 2015 - 17:32:25 CDT)
• Problerm with STAMP
  • Scazzocchio, Claudio (Fri Jul 22 2016 - 02:22:27 CDT)
  • John Stone (Thu Jul 21 2016 - 17:02:26 CDT)
  • Scazzocchio, Claudio (Sun Jul 17 2016 - 11:46:54 CDT)
• process and plot matrix data
  • John Stone (Fri Apr 20 2007 - 14:47:44 CDT)
  • Vlad Cojocaru (Fri Apr 20 2007 - 04:28:12 CDT)
• processing a large "molecule"
  • Arham Amouie (Sun Aug 07 2016 - 03:13:52 CDT)
  • Axel Kohlmeyer (Sat Aug 06 2016 - 13:49:48 CDT)
  • Arham Amouie (Sat Aug 06 2016 - 13:12:18 CDT)
• PRODRG generated .gro file
  • Axel Kohlmeyer (Tue Aug 22 2006 - 21:51:42 CDT)
  • Marc Charendoff (Tue Aug 22 2006 - 21:03:41 CDT)
• producing high quality video on Mac
  • John Stone (Wed Feb 17 2010 - 19:57:08 CST)
  • Dan Lussier (Wed Feb 17 2010 - 17:51:03 CST)
• ProDy issue with QMonly.psf/dcd from QMMM NAMD-ORCA simulations
  • John Stone (Sat Dec 12 2020 - 11:52:57 CST)
  • Francesco Pietra (Sat Dec 12 2020 - 10:39:41 CST)
• progports, new project
  • vmd-l_at_spider.med.jhmi.edu (Tue Aug 03 2004 - 11:02:09 CDT)
• program errors
  • Albert (Wed Dec 03 2014 - 15:24:52 CST)
  • John Stone (Wed Dec 03 2014 - 15:30:09 CST)
  • John Stone (Wed Dec 03 2014 - 15:11:44 CST)
  • Albert (Sun Nov 30 2014 - 02:32:36 CST)
• program finishes before bigdcd is ececuted completely
  • Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 10:07:23 CDT)
  • Leonardo Trabuco (Tue Sep 11 2007 - 08:22:11 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 06:19:53 CDT)
  • Leonardo Trabuco (Mon Sep 10 2007 - 16:50:39 CDT)
  • Èùìáò Åõáããåëéäçò (Mon Sep 10 2007 - 14:57:11 CDT)
• program finishes before bigdcd is executed completely
  • Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 17:26:12 CDT)
  • Leonardo Trabuco (Tue Sep 11 2007 - 14:51:11 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 13:56:32 CDT)
• Programming problem (making bonds)
  • Dr. Paul Fons (Sat Aug 25 2001 - 19:51:09 CDT)
• Progress Bar for the Elapsed Time: rendering problem
  • Axel Kohlmeyer (Thu Feb 05 2009 - 17:23:40 CST)
  • Suman Chakrabarty (Thu Feb 05 2009 - 16:42:20 CST)
• Projection of a vector on to another.
  • bo liu (Sat Sep 20 2008 - 06:09:46 CDT)
  • John Stone (Sat Sep 20 2008 - 02:11:41 CDT)
  • bo liu (Fri Sep 19 2008 - 23:03:42 CDT)
  • Katherine Parra (Fri Sep 19 2008 - 13:56:01 CDT)
• Projection on plane
  • John Stone (Fri Aug 02 2002 - 10:48:41 CDT)
  • Raj Gupta (Fri Aug 02 2002 - 10:41:38 CDT)
• proline trans to cis
  • Roman Petrenko (Thu Feb 26 2009 - 19:20:07 CST)
• Propagating PDB coordinates using Quaternion matrix
  • Peter Mawanga (Wed Mar 21 2018 - 12:27:40 CDT)
  • Ashar Malik (Wed Mar 21 2018 - 13:34:12 CDT)
  • Ashar Malik (Wed Mar 21 2018 - 01:16:18 CDT)
  • Peter Mawanga (Tue Mar 20 2018 - 13:22:18 CDT)
  • Ashar Malik (Tue Mar 20 2018 - 12:15:10 CDT)
  • Ashar Malik (Tue Mar 20 2018 - 10:00:57 CDT)
  • Peter Mawanga (Tue Mar 20 2018 - 09:29:06 CDT)
• proper enviroment for the VMD namdenergy plugin
  • Axel Kohlmeyer (Sun May 18 2014 - 08:08:19 CDT)
  • sunyeping (Sun May 18 2014 - 00:30:00 CDT)
• Proper use of psfgen "mutate"?
  • Francesco Pietra (Tue Apr 10 2018 - 09:20:20 CDT)
  • Brian Radak (Tue Apr 10 2018 - 08:58:47 CDT)
• properly applying patches to create DPPC
  • JC Gumbart (Thu Mar 11 2010 - 17:48:11 CST)
  • JC Gumbart (Wed Mar 10 2010 - 22:56:48 CST)
  • Ronald Salesky (Wed Mar 10 2010 - 18:33:59 CST)
• property iterate over a range (representation / draw style)
  • bonicoli_at_loria.fr (Wed Feb 04 2009 - 10:04:40 CST)
  • Axel Kohlmeyer (Tue Feb 03 2009 - 12:10:49 CST)
  • bonicoli_at_loria.fr (Tue Feb 03 2009 - 11:16:12 CST)
• PROPKA doesn't work in recent VMD1.9.1
  • Axel Kohlmeyer (Sun Feb 12 2012 - 09:47:21 CST)
  • Albert (Sun Feb 12 2012 - 05:25:14 CST)
• Protein Alignment Question
  • Vermaas, Josh (Wed Aug 11 2021 - 09:10:49 CDT)
  • Mcguire, Kelly (Wed Aug 11 2021 - 01:09:13 CDT)
• protein and lipid jumping
  • Gumbart, JC (Sun Oct 24 2021 - 23:26:45 CDT)
  • Ryan Woltz (Sun Oct 24 2021 - 13:47:18 CDT)
  • Raman Preet Singh (Sat Oct 23 2021 - 08:36:59 CDT)
  • Ebru Çetin (Sat Oct 23 2021 - 03:51:17 CDT)
  • Ashar Malik (Sat Oct 23 2021 - 01:17:03 CDT)
  • Ryan Woltz (Sat Oct 23 2021 - 01:01:48 CDT)
  • Ashar Malik (Sat Oct 23 2021 - 00:42:39 CDT)
  • Ryan Woltz (Fri Oct 22 2021 - 23:34:08 CDT)
  • Ashar Malik (Fri Oct 22 2021 - 22:15:11 CDT)
  • Ryan Woltz (Fri Oct 22 2021 - 21:57:27 CDT)
  • Ashar Malik (Fri Oct 22 2021 - 21:34:47 CDT)
  • Ryan Woltz (Fri Oct 22 2021 - 15:05:58 CDT)
• Protein breaks after automatic psf builder
  • PaweÅ‚ KÄ™dzierski (Mon Oct 17 2022 - 07:11:35 CDT)
  • Neeraj Dhandia (Fri Oct 14 2022 - 06:45:08 CDT)
• protein breaks into parts after converting trajectory file to pdb file
  • Cun Zhang (Mon Sep 27 2010 - 20:17:33 CDT)
  • Axel Kohlmeyer (Mon Sep 27 2010 - 10:32:58 CDT)
  • Joyce Tan (Mon Sep 27 2010 - 04:58:48 CDT)
• Protein Builder terminus
  • Sourav Ray (Tue May 26 2015 - 11:32:06 CDT)
  • Josh Vermaas (Tue May 26 2015 - 11:21:41 CDT)
  • Sourav Ray (Mon May 25 2015 - 02:02:31 CDT)
• Protein cavities
  • Axel Kohlmeyer (Sun May 29 2011 - 17:31:44 CDT)
  • BRAULIO VALDEBENITO MATURANA (Sun May 29 2011 - 16:42:33 CDT)
  • Francesco Oteri (Sun May 29 2011 - 07:09:59 CDT)
  • Axel Kohlmeyer (Sun May 29 2011 - 03:17:08 CDT)
  • BRAULIO VALDEBENITO MATURANA (Sat May 28 2011 - 23:26:02 CDT)
  • Irene Newhouse (Fri May 27 2011 - 16:52:50 CDT)
  • John Stone (Fri May 27 2011 - 14:47:03 CDT)
  • BRAULIO FAVIÁN VALDEBENITO MATURANA (Thu May 26 2011 - 12:41:48 CDT)
• Protein coordinate rotation
  • John Stone (Fri Sep 05 2008 - 13:07:55 CDT)
  • ianboru_at_email.arizona.edu (Fri Sep 05 2008 - 12:40:48 CDT)
• protein embedding membrane
  • javier.vallejos_at_correo.usach.cl (Fri Sep 08 2006 - 18:06:50 CDT)
• protein from protein sequence in VMD
  • Peter Freddolino (Thu Mar 31 2016 - 14:06:46 CDT)
  • Stefan Doerr (Thu Mar 31 2016 - 10:10:54 CDT)
  • Stefan Doerr (Thu Mar 31 2016 - 10:16:11 CDT)
  • Ashar Malik (Thu Mar 31 2016 - 09:47:27 CDT)
  • chin chun (Thu Mar 31 2016 - 08:40:44 CDT)
• protein in membrane
  • daniel aguayo (Wed Sep 13 2006 - 21:32:19 CDT)
  • Akshay Patny (Tue Sep 12 2006 - 16:05:04 CDT)
  • Ting Wang (Tue Sep 12 2006 - 16:03:43 CDT)
  • Akshay Patny (Tue Sep 12 2006 - 15:45:31 CDT)
  • Ting Wang (Tue Sep 12 2006 - 13:58:07 CDT)
  • Axel Kohlmeyer (Fri Sep 08 2006 - 18:12:02 CDT)
  • javier.vallejos_at_correo.usach.cl (Fri Sep 08 2006 - 17:35:27 CDT)
• Protein is not read in VMD Normal Mode Wizard plugin
  • Chetna Tyagi (Mon Nov 18 2019 - 07:53:02 CST)
• Protein line chain in water spehere
  • Steven Neumann (Mon Sep 10 2012 - 09:45:42 CDT)
• Protein move out of the water box in a QwikMD setup MD simulation using explicit solvent condition
  • João Ribeiro (Thu Jul 27 2017 - 12:42:39 CDT)
  • jrhau lung (Wed Jul 26 2017 - 20:37:32 CDT)
• Protein mutation issues
  • João Ribeiro (Wed Jun 13 2018 - 09:24:26 CDT)
  • Ashar Malik (Mon Jun 11 2018 - 00:22:13 CDT)
  • Bose, Ritwika (Sun Jun 10 2018 - 23:27:29 CDT)
• protein order parameter
  • Thomas Schmidt (Wed Jun 12 2013 - 15:39:01 CDT)
• protein peptide alignment.
  • Luis Gracia (Tue Feb 22 2005 - 00:20:10 CST)
  • Peter Freddolino (Sat Feb 12 2005 - 13:23:01 CST)
  • matteo.pennestri_at_virgilio.it (Sat Feb 12 2005 - 12:30:51 CST)
• Protein Reorientation
  • John Stone (Thu Mar 06 2003 - 10:52:52 CST)
  • Gemma Kinsella (Mon Mar 03 2003 - 08:39:51 CST)
• protein residue not being recognized as protein
  • Ryan Woltz (Fri Jun 17 2022 - 17:12:28 CDT)
• Protein residue read as solvent
  • Josh Vermaas (Wed Aug 17 2022 - 08:23:19 CDT)
  • Axel Kohlmeyer (Wed Aug 17 2022 - 07:48:42 CDT)
  • Arthur Pereira da Fonseca (Tue Aug 16 2022 - 18:49:52 CDT)
• protein schematic representaton
  • francesco oteri (Wed Jun 12 2013 - 09:24:32 CDT)
  • Axel Kohlmeyer (Wed Jun 12 2013 - 05:33:17 CDT)
  • hamid mosaddeghi (Wed Jun 12 2013 - 04:29:22 CDT)
  • francesco oteri (Mon Jun 10 2013 - 13:23:17 CDT)
• protein secondary structure
  • John Stone (Wed Mar 27 2013 - 14:54:02 CDT)
  • Juan Antonio Raygoza Garay (Thu Mar 21 2013 - 19:54:27 CDT)
  • Jack Bulat (Thu Mar 21 2013 - 18:34:37 CDT)
  • Juan Antonio Raygoza Garay (Thu Mar 21 2013 - 16:42:25 CDT)
• protein surface and volume code
  • Andrew Dalke (Wed Jan 14 1998 - 22:17:10 CST)
• Protein volume and cavityes
  • spitaleri.andrea_at_hsr.it (Wed Dec 07 2005 - 16:32:33 CST)
  • Ran Friedman (Wed Dec 07 2005 - 11:44:25 CST)
  • John Stone (Wed Dec 07 2005 - 10:05:27 CST)
  • Anthony Cruz (Wed Dec 07 2005 - 13:01:53 CST)
• Protein went out of the Box
  • M K (Mon Mar 02 2015 - 02:06:24 CST)
  • Norman Geist (Mon Mar 02 2015 - 02:15:16 CST)
  • Axel Kohlmeyer (Wed Nov 12 2014 - 01:38:30 CST)
  • Ashar Malik (Wed Nov 12 2014 - 00:41:23 CST)
  • M K (Tue Nov 11 2014 - 22:46:57 CST)
  • Tristan Croll (Tue Nov 11 2014 - 22:49:27 CST)
  • Ashar Malik (Tue Nov 11 2014 - 19:13:00 CST)
  • Tristan Croll (Tue Nov 11 2014 - 19:28:15 CST)
  • Josh Vermaas (Tue Nov 11 2014 - 18:23:25 CST)
  • M K (Tue Nov 11 2014 - 18:12:50 CST)
  • Josh Vermaas (Mon Sep 29 2014 - 09:14:02 CDT)
  • Ana Celia Vila Verde (Mon Sep 29 2014 - 09:21:18 CDT)
  • Vy Phan (Mon Sep 29 2014 - 08:09:02 CDT)
• Protein-ligand contact
  • flavio seixas (Mon Apr 30 2012 - 18:29:17 CDT)
  • Dong Luo (Wed Dec 21 2011 - 11:13:26 CST)
  • flavio seixas (Tue Dec 20 2011 - 08:10:15 CST)
• Protein-ligand interactions
  • Vermaas, Josh (Mon Jan 31 2022 - 14:52:57 CST)
  • Maryam (Mon Jan 31 2022 - 13:17:01 CST)
  • Josh Vermaas (Mon Jan 31 2022 - 11:43:36 CST)
  • Maryam (Mon Jan 31 2022 - 10:39:44 CST)
• protein-lipids v z coordinate
  • John Stone (Tue Aug 23 2005 - 12:58:50 CDT)
  • syma (Tue Aug 23 2005 - 12:06:27 CDT)
• protein-water hydrogen bonds
  • Roman Petrenko (Tue Aug 12 2008 - 10:52:32 CDT)
  • Axel Kohlmeyer (Tue Aug 12 2008 - 10:53:35 CDT)
  • Axel Kohlmeyer (Tue Aug 12 2008 - 10:37:45 CDT)
  • Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
• protein-water RDF
  • Axel Kohlmeyer (Mon Jun 27 2011 - 09:08:35 CDT)
  • Ajasja LjubetiÄ� (Mon Jun 27 2011 - 03:05:03 CDT)
  • divya nayar (Mon Jun 27 2011 - 01:15:21 CDT)
• protein/carbohydrate
  • Aaron Oakley (Tue Sep 02 2003 - 03:07:53 CDT)
  • Aaron Oakley (Fri Aug 08 2003 - 22:48:54 CDT)
• proto-HEME parameters
  • Cesar Millan (Thu Apr 06 2006 - 17:05:56 CDT)
• Protonated GLU/ASP in PSF generation
  • Justin Gullingsrud (Sun Aug 29 2004 - 21:01:52 CDT)
  • Vani Krishna (Sun Aug 29 2004 - 16:23:00 CDT)
• proximity of residues
  • Francesco Pietra (Wed Jan 23 2008 - 09:19:12 CST)
  • Axel Kohlmeyer (Wed Jan 23 2008 - 04:56:19 CST)
  • L. Michel Espinoza-Fonseca (Wed Jan 23 2008 - 04:21:01 CST)
  • Axel Kohlmeyer (Wed Jan 23 2008 - 03:49:49 CST)
  • Francesco Pietra (Wed Jan 23 2008 - 01:40:51 CST)
• Pruning defunct users and bouncing email accounts from VMD-L...
  • John Stone (Mon Feb 17 2014 - 10:24:16 CST)
• PSA & Rg values
  • Naeem Mahmood Ashraf (Sun Jul 03 2016 - 02:42:57 CDT)
• PSC WORKSHOP: COMPUTATIONAL BIOPHYSICS WORKSHOP
  • Troy Wymore (Fri Oct 14 2005 - 13:13:15 CDT)
  • Troy Wymore (Thu Sep 15 2005 - 11:15:13 CDT)
• PSF and PDB files do not show up
  • Ghosh, Shreya (Wed Jun 28 2017 - 12:45:25 CDT)
  • Ashar Malik (Wed Jun 28 2017 - 13:37:28 CDT)
• psf and top
  • John Stone (Thu Mar 10 2011 - 09:51:58 CST)
  • Francesco Oteri (Thu Mar 10 2011 - 09:10:05 CST)
• PSF File
  • Axel Kohlmeyer (Wed Mar 13 2019 - 19:54:21 CDT)
  • soroush ziaei (Wed Mar 13 2019 - 12:31:21 CDT)
  • Ashar Malik (Wed Mar 13 2019 - 03:25:10 CDT)
  • Hasnain Shabbir (Wed Mar 13 2019 - 02:12:13 CDT)
  • Axel Kohlmeyer (Sat Aug 31 2013 - 09:00:12 CDT)
  • Marzieh Dehghan (Sat Aug 31 2013 - 07:42:26 CDT)
  • JC Gumbart (Tue Jun 03 2008 - 15:24:36 CDT)
  • Katherine Parra (Tue Jun 03 2008 - 11:47:43 CDT)
  • Jindal Shah (Tue Jan 17 2006 - 13:21:49 CST)
• psf file for Doxorubicin
  • mishacat_at_udm.ru (Thu Apr 16 2009 - 08:32:14 CDT)
• PSF file generation
  • John Stone (Thu Jun 04 2015 - 19:18:46 CDT)
  • lecan (Wed Jun 03 2015 - 15:03:34 CDT)
• psf file generation.?
  • John Stone (Fri Feb 12 2010 - 00:00:21 CST)
  • zubin mehta (Wed Feb 10 2010 - 05:58:45 CST)
• psf file generation: once again
  • Peter Freddolino (Thu Sep 25 2008 - 08:12:34 CDT)
  • Rudra Banerjee (Wed Sep 24 2008 - 23:42:22 CDT)
  • Rudra Banerjee (Wed Sep 24 2008 - 22:45:49 CDT)
  • Peter Freddolino (Wed Sep 24 2008 - 23:01:48 CDT)
  • Rudra Banerjee (Wed Sep 24 2008 - 23:11:04 CDT)
• psf file is changed
  • Ashar Malik (Sat Jul 09 2016 - 12:01:42 CDT)
  • Tahmina Akter (Sat Jul 09 2016 - 11:15:52 CDT)
• psf file of graphene
  • nabaneeta mukhopadhyay (Wed Dec 21 2016 - 16:20:25 CST)
  • Mohsen Farshad (Wed Dec 21 2016 - 15:16:44 CST)
• psf file with D-proline
  • Gurunath Katagi (Wed Apr 09 2014 - 01:18:35 CDT)
• PSF files append!!
  • John Stone (Fri Nov 17 2006 - 16:33:52 CST)
  • CSM USP (Wed Nov 15 2006 - 13:06:06 CST)
• PSF Files Giving Long Bonds
  • Isuru Herath (Fri Dec 25 2020 - 21:21:28 CST)
  • Peter Freddolino (Fri Dec 25 2020 - 12:05:00 CST)
  • Isuru Herath (Fri Dec 25 2020 - 08:23:49 CST)
• psf for a DNA chain
  • Ashar Malik (Wed Jan 18 2017 - 07:12:54 CST)
  • saeed amini (Wed Jan 18 2017 - 06:44:21 CST)
• psf for already hydrogen-added structure
  • Peter Freddolino (Thu Jul 20 2006 - 20:22:05 CDT)
  • hori koshii (Thu Jul 20 2006 - 15:09:14 CDT)
• PSF for AMBER top + crd files
  • Axel Kohlmeyer (Tue Sep 15 2009 - 17:10:32 CDT)
  • John Stone (Tue Sep 15 2009 - 16:56:34 CDT)
  • Goutham (Tue Sep 15 2009 - 16:35:23 CDT)
• psf for CNT?
  • Axel Kohlmeyer (Wed Sep 09 2009 - 10:46:49 CDT)
  • Ronald Salesky (Wed Sep 09 2009 - 09:55:05 CDT)
• PSF for CYCLIC PEPTIDE :
  • Nikhil Maroli (Sat Sep 26 2015 - 05:45:17 CDT)
• PSF for cyclic peptide nanotube
  • Nikhil Maroli (Fri Oct 02 2015 - 08:36:47 CDT)
• psf for cyclic peptide nanotube:psf ready for one ring but required for 8 ring
  • Nikhil Maroli (Sat Sep 26 2015 - 06:50:31 CDT)
• psf for protein
  • JC Gumbart (Thu Sep 21 2006 - 18:13:02 CDT)
  • JC Gumbart (Thu Sep 21 2006 - 17:42:35 CDT)
  • JC Gumbart (Wed Sep 20 2006 - 14:43:38 CDT)
  • Al-Rawi, Ahlam (Tue Sep 19 2006 - 12:03:55 CDT)
  • JC Gumbart (Tue Sep 19 2006 - 10:43:53 CDT)
  • Al-Rawi, Ahlam (Mon Sep 18 2006 - 17:24:27 CDT)
• Psf format
  • Bashir (Sat Aug 16 2014 - 12:28:49 CDT)
  • Axel Kohlmeyer (Sun Oct 31 2010 - 13:54:12 CDT)
  • masoumeh ozmaeian (Sun Oct 31 2010 - 13:37:18 CDT)
  • Axel Kohlmeyer (Sun Oct 17 2010 - 13:36:34 CDT)
  • masoumeh ozmaeian (Sun Oct 17 2010 - 02:26:04 CDT)
• psf gen charmm format
  • John Stone (Wed Oct 20 2010 - 13:57:18 CDT)
  • Hannes Loeffler (Mon Oct 11 2010 - 07:25:58 CDT)
  • Jorgen Simonsen (Wed Sep 22 2010 - 06:18:45 CDT)
• psf gen: missing atoms for bonds
  • Mihaela Drenscko (Wed Dec 31 2014 - 10:17:49 CST)
• PSF Generation
  • Rogan Carr (Tue Feb 16 2010 - 09:24:06 CST)
  • BIPLAB NANDI (Mon Feb 15 2010 - 23:10:53 CST)
  • Leonardo G. Trabuco (Fri Jun 02 2006 - 13:22:41 CDT)
  • Moumita Maiti (Fri Jun 02 2006 - 11:56:17 CDT)
• PSF generation for proteins with isopeptide bonds
  • Zack Scholl (Thu Apr 26 2012 - 19:57:48 CDT)
• psf generation of circular proteins
  • John Stone (Thu Jun 12 2008 - 00:22:46 CDT)
  • Rabab Toubar (Wed Jun 11 2008 - 13:30:05 CDT)
  • John Stone (Wed Jun 11 2008 - 10:18:02 CDT)
  • Rabab Toubar (Sun Jun 08 2008 - 09:36:00 CDT)
• PSF not generating
  • flavio seixas (Thu Jun 20 2013 - 11:25:52 CDT)
  • flavio seixas (Tue Jun 18 2013 - 17:58:17 CDT)
  • Nathan Li (Tue Jun 18 2013 - 12:53:27 CDT)
• PSF Script
  • Mcguire, Kelly (Mon Mar 07 2022 - 13:15:35 CST)
  • Mcguire, Kelly (Mon Mar 07 2022 - 12:23:46 CST)
  • Peter Freddolino (Sat Mar 05 2022 - 18:33:13 CST)
  • Mcguire, Kelly (Sat Mar 05 2022 - 11:50:08 CST)
• PSF tools in windows and long paths
  • Peter Freddolino (Wed Feb 15 2006 - 10:34:21 CST)
  • Jacob Pøhlsgaard (Wed Feb 15 2006 - 02:51:06 CST)
  • John Stone (Tue Feb 14 2006 - 16:11:54 CST)
  • L. Michel Espinoza-Fonseca (Tue Feb 14 2006 - 04:38:34 CST)
  • Jacob Pøhlsgaard (Tue Feb 14 2006 - 03:47:34 CST)
• PSF works in NAMD but not in VMD
  • Esben A. Gad (Wed Jun 25 2008 - 06:42:53 CDT)
  • Peter Freddolino (Tue Jun 24 2008 - 07:19:00 CDT)
  • Esben A. Gad (Tue Jun 24 2008 - 03:08:07 CDT)
  • Axel Kohlmeyer (Mon Jun 23 2008 - 10:18:33 CDT)
  • Esben A. Gad (Mon Jun 23 2008 - 07:20:08 CDT)
  • Axel Kohlmeyer (Fri Jun 20 2008 - 09:57:37 CDT)
  • Peter Freddolino (Fri Jun 20 2008 - 08:04:24 CDT)
  • Esben A. Gad (Fri Jun 20 2008 - 06:05:22 CDT)
  • Peter Freddolino (Wed Jun 18 2008 - 06:53:50 CDT)
  • Esben A. Gad (Wed Jun 18 2008 - 03:17:04 CDT)
• PSF_and_PDB_file_of_LIGAND
  • Peter Freddolino (Fri Jun 01 2007 - 11:00:26 CDT)
  • Karol Kaszuba (Fri Jun 01 2007 - 05:29:53 CDT)
• PSFGEN
  • David Alejandro Rincón Daza (Wed Jun 03 2020 - 16:43:26 CDT)
  • Josh Vermaas (Wed Jun 03 2020 - 16:12:53 CDT)
  • David Alejandro Rincón Daza (Wed Jun 03 2020 - 15:10:47 CDT)
  • Josh Vermaas (Wed Jun 03 2020 - 11:32:06 CDT)
  • David Alejandro Rincón Daza (Tue Jun 02 2020 - 16:51:19 CDT)
  • lloyd riggs (Fri Sep 28 2012 - 08:49:12 CDT)
  • John Stone (Thu Jun 22 2006 - 15:45:15 CDT)
  • Marcela Madrid (Thu Jun 22 2006 - 15:28:23 CDT)
  • Oded Kleifeld (Mon Aug 25 2003 - 19:50:26 CDT)
• psfgen - loss of disulfide bonds
  • Peter Freddolino (Thu Sep 11 2008 - 22:33:18 CDT)
  • Roman Petrenko (Thu Sep 11 2008 - 22:50:34 CDT)
  • Rabab Toubar (Thu Sep 11 2008 - 21:35:53 CDT)
• psfgen - pdbalias when using readpsf
  • Brian Radak (Thu Dec 15 2016 - 14:28:56 CST)
• psfgen 1.4.7 and CMAP extended PSF
  • Gianluca Interlandi (Wed Dec 08 2010 - 19:11:17 CST)
• PSFGEN 1.6.4 autogenerate PATCH keyword not available
  • Vermaas, Joshua (Tue Apr 24 2018 - 12:08:20 CDT)
  • Brian Radak (Tue Apr 24 2018 - 11:23:47 CDT)
  • Vermaas, Joshua (Tue Apr 24 2018 - 10:59:35 CDT)
  • Brian Radak (Tue Apr 24 2018 - 07:34:01 CDT)
  • Thomas C. Bishop (Mon Apr 23 2018 - 19:57:47 CDT)
• psfgen 2.0
  • zeynab hosseini (Thu Aug 05 2021 - 04:25:41 CDT)
  • Victor Kwan (Wed Aug 04 2021 - 16:16:26 CDT)
  • zeynab hosseini (Wed Aug 04 2021 - 14:17:11 CDT)
  • zeynab hosseini (Wed Aug 04 2021 - 12:06:36 CDT)
• psfgen 2.0 and Drude
  • Gumbart, JC (Tue Aug 03 2021 - 14:44:09 CDT)
  • Gumbart, JC (Tue Aug 03 2021 - 14:22:37 CDT)
• psfgen 999 waters resname X column
  • Low Soo Mei (Mon Apr 07 2008 - 21:02:37 CDT)
  • John Stone (Mon Apr 07 2008 - 11:54:54 CDT)
  • Low Soo Mei (Mon Apr 07 2008 - 05:31:52 CDT)
• Psfgen : apply patches
  • Peter Freddolino (Tue Nov 04 2008 - 07:16:07 CST)
  • Nicolas Floquet (Tue Nov 04 2008 - 06:51:57 CST)
• psfgen and Alternate location indicator
  • Ivan Gregoretti (Wed Mar 19 2014 - 08:44:01 CDT)
  • John Stone (Tue Mar 18 2014 - 17:12:43 CDT)
  • Ivan Gregoretti (Tue Mar 18 2014 - 13:53:18 CDT)
• psfgen and CG
  • John Stone (Mon Oct 01 2012 - 12:33:19 CDT)
  • lloyd riggs (Mon Oct 01 2012 - 12:10:05 CDT)
  • lloyd riggs (Mon Oct 01 2012 - 11:39:43 CDT)
• psfgen and DNA
  • Chang, Christopher (Thu Jul 07 2005 - 10:54:42 CDT)
  • Meunier, Vincent (Wed Jul 06 2005 - 20:46:39 CDT)
• PSFGEN and Reading Bonds from PDB Files
  • Axel Kohlmeyer (Mon Feb 06 2012 - 11:52:27 CST)
  • Rajan Vatassery (Mon Feb 06 2012 - 11:02:14 CST)
  • flavio seixas (Sun Feb 05 2012 - 18:24:40 CST)
  • Chris Harrison (Sun Feb 05 2012 - 15:45:19 CST)
  • Axel Kohlmeyer (Sun Feb 05 2012 - 15:36:29 CST)
  • Rajan Vatassery (Sun Feb 05 2012 - 14:13:43 CST)
• psfgen and unknown residue types
  • Ivan Gregoretti (Tue Feb 25 2014 - 07:35:49 CST)
  • Tristan Croll (Mon Feb 24 2014 - 19:43:13 CST)
  • Josh Vermaas (Mon Feb 24 2014 - 18:05:26 CST)
  • John Stone (Mon Feb 24 2014 - 18:22:48 CST)
  • Ivan Gregoretti (Mon Feb 24 2014 - 17:32:30 CST)
  • Josh Vermaas (Mon Feb 24 2014 - 15:14:09 CST)
  • Ivan Gregoretti (Mon Feb 24 2014 - 15:06:40 CST)
  • Josh Vermaas (Mon Feb 24 2014 - 11:20:10 CST)
  • Boris Steipe (Mon Feb 24 2014 - 10:16:00 CST)
  • Ivan Gregoretti (Mon Feb 24 2014 - 09:51:24 CST)
  • Boris Steipe (Sun Feb 23 2014 - 21:19:42 CST)
  • Ivan Gregoretti (Sun Feb 23 2014 - 18:56:42 CST)
  • Tristan Croll (Sun Feb 23 2014 - 18:13:23 CST)
  • Ivan Gregoretti (Sun Feb 23 2014 - 17:39:13 CST)
  • Tristan Croll (Sun Feb 23 2014 - 17:48:04 CST)
  • Ivan Gregoretti (Sat Feb 22 2014 - 17:29:35 CST)
• psfgen and xplor topology
  • Jerry Xu (Tue Oct 26 2004 - 15:16:26 CDT)
  • Jim Phillips (Tue Oct 26 2004 - 13:31:45 CDT)
  • Charles McCallum (Tue Oct 26 2004 - 11:36:37 CDT)
  • Marc Q. Ma (Tue Oct 26 2004 - 11:25:56 CDT)
  • Jim Phillips (Tue Oct 26 2004 - 10:32:26 CDT)
  • Charles McCallum (Tue Oct 26 2004 - 09:50:08 CDT)
  • Marc Q. Ma (Tue Oct 26 2004 - 08:17:25 CDT)
  • Charles McCallum (Mon Oct 25 2004 - 22:33:48 CDT)
  • Marc Q. Ma (Mon Oct 25 2004 - 15:08:03 CDT)
• psfgen building fails due to locale
  • Stefan Doerr (Mon Jul 23 2018 - 08:15:25 CDT)
  • Axel Kohlmeyer (Mon Jul 23 2018 - 08:12:37 CDT)
  • Stefan Doerr (Mon Jul 23 2018 - 07:28:16 CDT)
• psfgen crashes VMD
  • John Stone (Fri Jun 07 2002 - 11:44:41 CDT)
  • jrui_at_ci.uc.pt (Thu Jun 06 2002 - 19:55:28 CDT)
• psfgen delatom usage
  • Stephen M. Dutz (Fri Nov 30 2007 - 15:36:18 CST)
• psfgen deleting water molecules
  • Jim Phillips (Fri Jun 24 2005 - 15:51:37 CDT)
  • shgnwgn_at_eden.rutgers.edu (Mon Jun 13 2005 - 09:37:55 CDT)
• PSFGEN error "failed to parse autogenerate statement"
  • Chitrak Gupta (Wed Mar 08 2017 - 13:45:28 CST)
• psfgen error for Argon atoms
  • Arash Azari (Mon Jan 27 2014 - 15:10:16 CST)
  • Axel Kohlmeyer (Mon Jan 27 2014 - 11:05:02 CST)
  • Josh Vermaas (Mon Jan 27 2014 - 11:41:08 CST)
  • Boris Steipe (Mon Jan 27 2014 - 10:14:28 CST)
  • Arash Azari (Mon Jan 27 2014 - 00:51:37 CST)
  • Josh Vermaas (Sun Jan 26 2014 - 16:29:06 CST)
  • Arash Azari (Sun Jan 26 2014 - 15:06:16 CST)
• psfgen error with "auto angles dihe patch"
  • Vermaas, Joshua (Thu Jun 29 2017 - 16:02:22 CDT)
  • Ashar Malik (Thu Jun 29 2017 - 14:30:57 CDT)
  • Mary Lowe (Thu Jun 29 2017 - 13:41:08 CDT)
  • Chitrak Gupta (Mon Jun 06 2016 - 10:47:01 CDT)
• psfgen error with alias residue
  • Jim Phillips (Mon Jun 09 2003 - 09:33:06 CDT)
  • Dr. Daniel James White PhD (Mon Jun 09 2003 - 08:48:32 CDT)
• psfgen error with charmm36 parameters?
  • Pawel Kedzierski (Wed Apr 05 2017 - 06:23:50 CDT)
  • Ashar Malik (Wed Apr 05 2017 - 05:15:38 CDT)
  • Magnus Andersson (Wed Apr 05 2017 - 04:48:25 CDT)
• psfgen error: FAILED TO RECOGNIZE LONEPAIR
  • Monika Madhavi (Wed Sep 16 2015 - 04:10:11 CDT)
  • Monika Madhavi (Fri Sep 11 2015 - 00:48:51 CDT)
• psfgen error: MOLECULE DESTROYED BY FATAL ERROR
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 18:12:31 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 16:47:42 CST)
  • Sergio Anis (Tue Nov 22 2005 - 15:58:42 CST)
  • Ana Celia Araujo Vila Verde (Tue Nov 22 2005 - 13:13:15 CST)
• PSFgen failure
  • João Ribeiro (Mon Nov 12 2018 - 10:27:28 CST)
  • Anatoly Chernyshev (Mon Nov 05 2018 - 07:13:11 CST)
  • Leyla Celik (Mon Mar 14 2005 - 04:13:13 CST)
  • Leyla Celik (Mon Mar 14 2005 - 02:17:17 CST)
• psfgen for lipid
  • Ting Wang (Thu May 11 2006 - 15:09:07 CDT)
• psfgen for protein-RNA complex
  • Schreiner Eduard (Tue Mar 02 2010 - 11:17:42 CST)
  • YangMingjun (Tue Mar 02 2010 - 10:50:13 CST)
• psfgen forces to apply terminils to peptide
  • Wanzhi Qiu (Fri Oct 11 2013 - 03:36:09 CDT)
  • Tristan Croll (Thu Oct 10 2013 - 03:49:56 CDT)
  • Wanzhi Qiu (Thu Oct 10 2013 - 00:11:40 CDT)
• psfgen generates 0 atom .psf file
  • JC Gumbart (Fri Feb 12 2010 - 22:58:35 CST)
  • Axel Kohlmeyer (Fri Feb 12 2010 - 22:52:25 CST)
  • Ronald Salesky (Fri Feb 12 2010 - 19:41:10 CST)
• psfgen generating incorrect dihedrals
  • JC Gumbart (Fri Nov 09 2012 - 04:12:47 CST)
  • Sasha Perkins (Thu Nov 08 2012 - 16:40:39 CST)
• psfgen giving wrong structure in the autopdb file
  • Harish Srinivasan (Thu Apr 06 2017 - 01:37:29 CDT)
• psfgen N-terminal patches
  • Chaya Stern (Mon Nov 03 2014 - 11:17:08 CST)
  • Josh Vermaas (Fri Oct 31 2014 - 16:41:52 CDT)
  • Ashar Malik (Fri Oct 31 2014 - 16:05:54 CDT)
  • Ashar Malik (Fri Oct 31 2014 - 15:37:42 CDT)
  • Chaya Stern (Fri Oct 31 2014 - 14:08:07 CDT)
• PSFGEN NAD spilts up in 3
  • Per Jr. Greisen (Tue May 02 2006 - 10:42:29 CDT)
• psfgen not parsing toppar_all36_lipid_detergent.str
  • Josh Vermaas (Mon Oct 06 2014 - 17:24:32 CDT)
  • Chaya Stern (Mon Oct 06 2014 - 16:51:46 CDT)
  • Josh Vermaas (Mon Oct 06 2014 - 16:31:42 CDT)
  • Josh Vermaas (Mon Oct 06 2014 - 16:09:00 CDT)
  • Chaya Stern (Mon Oct 06 2014 - 16:25:30 CDT)
  • Chaya Stern (Mon Oct 06 2014 - 15:01:48 CDT)
• psfgen on console missing dihedral parameters for standard residues
  • Prof. Eddie (Tue Mar 09 2021 - 13:00:06 CST)
• psfgen on proteins with multiple chains
  • Peter Freddolino (Mon Apr 04 2016 - 13:19:38 CDT)
  • Stefan Doerr (Sun Apr 03 2016 - 12:04:32 CDT)
  • Akshay Bhatnagar (Sun Apr 03 2016 - 11:19:07 CDT)
  • Akshay Bhatnagar (Sun Apr 03 2016 - 11:17:30 CDT)
• psfgen or autopsf
  • Axel Kohlmeyer (Sun Dec 26 2010 - 09:25:08 CST)
  • leila karami (Sun Dec 26 2010 - 08:11:34 CST)
• psfgen patching protein-ligand
  • Francesco Pietra (Mon Nov 12 2018 - 10:23:41 CST)
  • João Ribeiro (Mon Nov 12 2018 - 09:35:10 CST)
  • Francesco Pietra (Tue Oct 23 2018 - 08:50:35 CDT)
  • João Ribeiro (Mon Oct 22 2018 - 12:53:34 CDT)
  • Francesco Pietra (Mon Oct 22 2018 - 12:03:17 CDT)
  • Francesco Pietra (Tue Oct 16 2018 - 15:10:45 CDT)
  • João Ribeiro (Tue Oct 16 2018 - 10:56:05 CDT)
  • Francesco Pietra (Tue Oct 16 2018 - 10:47:35 CDT)
  • João Ribeiro (Tue Oct 16 2018 - 10:21:24 CDT)
  • Francesco Pietra (Tue Oct 16 2018 - 10:13:08 CDT)
• psfgen plugin
  • John Stone (Wed Jun 02 2010 - 12:58:54 CDT)
  • sriteja mantha (Wed Jun 02 2010 - 05:23:51 CDT)
• psfgen problem
  • Rudra Banerjee (Thu Sep 18 2008 - 21:48:08 CDT)
  • L. Michel Espinoza-Fonseca (Thu Sep 18 2008 - 10:13:55 CDT)
  • Rudra Banerjee (Thu Sep 18 2008 - 09:34:14 CDT)
  • Peter Freddolino (Thu Sep 18 2008 - 07:18:15 CDT)
  • Rudra Banerjee (Thu Sep 18 2008 - 01:45:55 CDT)
  • Morad Alawneh (Wed Jan 04 2006 - 17:34:46 CST)
  • Brian Bennion (Fri Oct 08 2004 - 21:58:07 CDT)
  • mdcooper (Fri Oct 08 2004 - 15:54:58 CDT)
• PSFGEN problem with URA residues
  • Peter Freddolino (Mon Oct 20 2008 - 09:04:03 CDT)
  • Anirban Ghosh (Mon Oct 20 2008 - 08:30:49 CDT)
  • Peter Freddolino (Mon Oct 20 2008 - 06:59:42 CDT)
  • Anirban Ghosh (Mon Oct 20 2008 - 06:27:06 CDT)
• psfgen problems of many segment complex
  • Takeru KAMEDA (Tue May 28 2019 - 09:51:24 CDT)
  • Peter Freddolino (Tue May 28 2019 - 10:05:05 CDT)
  • Takeru KAMEDA (Tue May 28 2019 - 09:16:46 CDT)
  • Joao Ribeiro (Tue May 28 2019 - 08:45:26 CDT)
  • Takeru KAMEDA (Tue May 28 2019 - 08:28:06 CDT)
  • Peter Freddolino (Mon May 27 2019 - 08:47:37 CDT)
  • Takeru KAMEDA (Mon May 27 2019 - 03:19:13 CDT)
  • Takeru KAMEDA (Fri May 24 2019 - 10:14:43 CDT)
  • Vermaas, Joshua (Fri May 24 2019 - 07:52:55 CDT)
  • Peter Freddolino (Fri May 24 2019 - 07:22:38 CDT)
  • Takeru KAMEDA (Fri May 24 2019 - 00:57:38 CDT)
• psfgen problems?
  • Charles McCallum (Tue Aug 22 2006 - 12:41:51 CDT)
  • Shenoy, Sukesh (Mon Aug 21 2006 - 17:41:52 CDT)
• psfgen probs
  • Peter Freddolino (Tue Aug 22 2006 - 10:12:45 CDT)
  • Shenoy, Sukesh (Tue Aug 22 2006 - 10:03:41 CDT)
• psfgen question
  • Brian Bennion (Thu Mar 25 2004 - 11:42:45 CST)
  • li (Thu Mar 25 2004 - 03:48:27 CST)
• psfgen script for VMD 1.8.7
  • Mark Cunningham (Tue Feb 08 2011 - 20:48:50 CST)
  • Marc Charendoff (Tue Feb 08 2011 - 12:26:25 CST)
• psfgen tyrosine anion-Fe bond
  • Francesco Pietra (Sun Apr 01 2012 - 09:53:13 CDT)
• PSFGEN vs AUTOPSF
  • Peter Freddolino (Fri Oct 30 2020 - 08:00:10 CDT)
  • White, Mark (Thu Oct 29 2020 - 18:10:37 CDT)
• PSFGEN vs. VMD
  • nordgren_at_sas.upenn.edu (Wed May 11 2005 - 05:01:37 CDT)
• psfgen vs. x-plor
  • Axel Kohlmeyer (Wed Nov 09 2005 - 02:12:36 CST)
  • Craig Maloney (Tue Nov 08 2005 - 20:01:52 CST)
• psfgen woes...
  • Peter Freddolino (Mon Aug 28 2006 - 16:11:11 CDT)
  • Pavan Ghatty (Mon Aug 28 2006 - 16:00:42 CDT)
• psfgen, adding residues with command "residue"
  • Tristan Croll (Wed Mar 19 2014 - 21:27:20 CDT)
  • Ivan Gregoretti (Wed Mar 19 2014 - 19:18:50 CDT)
  • Josh Vermaas (Wed Mar 19 2014 - 18:39:10 CDT)
  • Ivan Gregoretti (Wed Mar 19 2014 - 17:58:24 CDT)
  • Josh Vermaas (Wed Mar 19 2014 - 14:01:37 CDT)
  • Ivan Gregoretti (Wed Mar 19 2014 - 13:07:42 CDT)
• psfgen, mutate, and multiple chains
  • Andrea Kirkpatrick (Mon Jul 09 2012 - 17:31:35 CDT)
• psfgen-reading residues above 10 thousand
  • Tristan Croll (Fri May 30 2014 - 15:33:52 CDT)
  • Josh Vermaas (Fri May 30 2014 - 07:08:27 CDT)
  • Vasumathi Velachi (Fri May 30 2014 - 04:25:01 CDT)
  • Josh Vermaas (Thu May 29 2014 - 08:46:30 CDT)
  • Vasumathi Velachi (Thu May 29 2014 - 05:13:26 CDT)
• psfgen: auto none not working
  • Peter Freddolino (Mon Jun 15 2009 - 06:50:46 CDT)
  • Ruchi Sachdeva (Mon Jun 15 2009 - 03:57:25 CDT)
• psfgen: error processing bonds
  • Edward Lyman (Sun May 01 2011 - 16:14:33 CDT)
  • Axel Kohlmeyer (Sun May 01 2011 - 16:20:45 CDT)
  • Axel Kohlmeyer (Sat Apr 30 2011 - 10:45:17 CDT)
  • Edward Lyman (Sat Apr 30 2011 - 10:39:47 CDT)
  • Edward Lyman (Sat Apr 30 2011 - 10:16:16 CDT)
  • Axel Kohlmeyer (Fri Apr 29 2011 - 15:11:54 CDT)
  • Edward Lyman (Fri Apr 29 2011 - 14:30:53 CDT)
  • Axel Kohlmeyer (Fri Apr 29 2011 - 08:40:55 CDT)
  • Jim Phillips (Fri Apr 29 2011 - 08:12:56 CDT)
  • Edward Lyman (Fri Apr 29 2011 - 08:00:52 CDT)
  • Jim Phillips (Tue Apr 26 2011 - 14:21:01 CDT)
  • Jim Phillips (Tue Apr 26 2011 - 11:43:56 CDT)
  • John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
  • Edward Lyman (Fri Apr 22 2011 - 10:03:30 CDT)
• psfgen: how to place patches to end of residue definition in pdb file?
  • Sebastian Stolzenberg (Tue Jun 09 2009 - 11:33:41 CDT)
• psfgen: last CTER does not work
  • Peter Freddolino (Thu Jun 15 2006 - 14:35:02 CDT)
  • Morad Alawneh (Thu Jun 15 2006 - 14:30:14 CDT)
• psfgen: no element symbol in pdb when occupancy zero
  • Francesco Pietra (Fri Nov 14 2014 - 11:07:45 CST)
  • Francesco Pietra (Fri Nov 14 2014 - 04:00:01 CST)
• PSFGEN: Residue addition not working
  • Vermaas, Joshua (Fri Mar 02 2018 - 13:55:19 CST)
  • Peter Mawanga (Fri Mar 02 2018 - 04:05:45 CST)
• PSFGEN::: ERROR: failed on end of segment
  • Dibyadeep Paul (Wed Feb 13 2008 - 03:38:14 CST)
• PSFGEN:buiding an uncharged protein
  • luca.dallaglio2_at_studio.unibo.it (Tue Jun 12 2007 - 02:55:14 CDT)
• psfread error
  • Salvatore Mario Cosseddu (Thu Feb 14 2013 - 09:28:49 CST)
  • Mohammad Elgamacy (Wed Feb 13 2013 - 08:55:03 CST)
• ptraj
  • John Stone (Tue Sep 27 2005 - 09:57:34 CDT)
  • Michel Espinoza-Fonseca (Tue Sep 27 2005 - 06:24:50 CDT)
• public VMD cvs server
  • John Stone (Fri Mar 04 2011 - 09:13:10 CST)
• Pucker parameters
  • John Stone (Tue Jul 12 2011 - 12:53:39 CDT)
  • Payne, Christy (Thu Jul 07 2011 - 14:35:18 CDT)
• Puckering Parameters
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  • mish (Wed Sep 04 2013 - 07:49:44 CDT)
• Pulling and Anchoring residues
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• Pulling vector direction in SMD
  • Peter Freddolino (Wed Nov 04 2020 - 08:05:49 CST)
  • miyatake_at_riken.jp (Wed Nov 04 2020 - 02:51:09 CST)
  • miyatake_at_riken.jp (Wed Nov 04 2020 - 02:57:00 CST)
  • miyatake_at_riken.jp (Tue Nov 03 2020 - 19:17:30 CST)
• purple bacteria and psfgen
  • John Stone (Wed Jul 16 2008 - 02:50:49 CDT)
  • brosbam_at_berkeley.edu (Tue Jul 15 2008 - 12:37:30 CDT)
• put the water box in a grid and traverse for the atoms in each grid
  • Axel Kohlmeyer (Thu Apr 11 2013 - 03:20:26 CDT)
  • Gurunath Katagi (Thu Apr 11 2013 - 01:53:45 CDT)
• puts format
  • Jerome Henin (Wed Sep 13 2006 - 18:01:21 CDT)
  • Axel Kohlmeyer (Wed Sep 13 2006 - 16:43:31 CDT)
  • John Stone (Wed Sep 13 2006 - 16:27:34 CDT)
  • Alexandr Isayev (Wed Sep 13 2006 - 16:18:04 CDT)
  • lily jin (Wed Sep 13 2006 - 15:22:27 CDT)
• putting a set of selections in a list or an array
  • Axel Kohlmeyer (Sun Jan 11 2009 - 13:53:41 CST)
  • A D (Sun Jan 11 2009 - 12:14:08 CST)
• Putting different peptide chains (spaced apart) in a single .xbgf file
  • Sourav Ray (Mon Feb 09 2015 - 02:28:54 CST)
  • Tristan Croll (Sun Feb 08 2015 - 19:30:28 CST)
  • Richard Wood (Sun Feb 08 2015 - 19:11:52 CST)
  • Tristan Croll (Sun Feb 08 2015 - 14:57:01 CST)
  • Sourav Ray (Wed Feb 04 2015 - 05:25:19 CST)
• putting Lipid layers around a protein
  • Florian Haberl (Tue Nov 16 2004 - 03:32:41 CST)
  • li (Mon Nov 15 2004 - 00:42:15 CST)
  • Nitin Bhardwaj (Sun Nov 14 2004 - 19:20:22 CST)
• Puzzle with "small molecule" ligand structure in nucleotide environments
  • Francesco Pietra (Sun Feb 06 2022 - 01:59:52 CST)
• puzzling psfgen problem with deleted atoms coming back
  • Irene Newhouse (Thu Jul 26 2007 - 17:40:01 CDT)
  • Irene Newhouse (Fri Jul 13 2007 - 16:47:05 CDT)
• puzzling writepdb error
  • Chang, Christopher (Wed Oct 12 2005 - 17:58:33 CDT)
  • John Stone (Wed Oct 12 2005 - 16:58:24 CDT)
  • Samuel Flores (Wed Oct 12 2005 - 16:12:26 CDT)
• Py_atomsel.C: invalid conversion
  • Chang, Christopher (Tue Sep 02 2008 - 13:59:12 CDT)
  • John Stone (Fri Aug 29 2008 - 13:05:06 CDT)
  • Chang, Christopher (Fri Aug 29 2008 - 13:01:04 CDT)
• Pyhton Mode
  • Axel Kohlmeyer (Thu Aug 20 2009 - 08:10:51 CDT)
  • Peyman Yamin (Thu Aug 20 2009 - 04:49:33 CDT)
• python
  • John Stone (Mon Nov 13 2006 - 10:35:02 CST)
  • alexandra.marques_at_fc.up.pt (Sun Nov 12 2006 - 11:23:39 CST)
  • John Stone (Thu Apr 13 2006 - 23:01:06 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Thu Apr 13 2006 - 08:15:01 CDT)
  • Irina Tuszynska (Mon Nov 21 2005 - 11:37:17 CST)
• python - writes frames to pdb files
  • John Stone (Tue Jun 13 2006 - 15:51:24 CDT)
  • Per Jr. Greisen (Sat Jun 10 2006 - 06:19:11 CDT)
• python 2.3
  • John Stone (Tue Apr 20 2004 - 15:02:25 CDT)
  • Ramon Crehuet (Tue Apr 20 2004 - 11:39:32 CDT)
• python 2.7 probelms
  • Josh Vermaas (Fri Aug 15 2014 - 16:28:42 CDT)
  • Chris Knorowski (Fri Aug 15 2014 - 16:05:50 CDT)
  • John Stone (Fri Aug 15 2014 - 16:21:12 CDT)
  • Josh Vermaas (Thu Aug 14 2014 - 20:48:22 CDT)
  • Chris Knorowski (Thu Aug 14 2014 - 15:52:40 CDT)
• python and C++ extensions
  • Jim Phillips (Fri Jul 27 2007 - 16:56:00 CDT)
  • John Stone (Thu Jul 26 2007 - 16:40:47 CDT)
  • karan uppal (Thu Jul 26 2007 - 11:19:06 CDT)
• Python and numpy
  • Florian Haberl (Tue Jan 11 2005 - 07:31:37 CST)
• python and vmd
  • Axel Kohlmeyer (Wed Jul 15 2009 - 07:46:20 CDT)
  • Jorgen Simonsen (Wed Jul 15 2009 - 04:23:12 CDT)
• python callback!!!!
  • Anand Kaushal (Wed Jul 28 2004 - 16:19:15 CDT)
• python callbacks
  • John Stone (Tue Aug 31 2004 - 15:26:21 CDT)
  • Travis DePuy (Mon Aug 23 2004 - 16:56:25 CDT)
  • Justin Gullingsrud (Mon Feb 10 2003 - 10:47:37 CST)
  • Lars Bruno Hansen (Mon Feb 10 2003 - 04:03:58 CST)
• Python callbacks in VMD
  • John Stone (Wed Aug 20 2008 - 22:59:53 CDT)
  • James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
• python can't find math module
  • Craig Maloney (Tue Nov 01 2005 - 15:50:10 CST)
• Python crash VMD1.9.4
  • Daipayan Sarkar (Tue Apr 18 2023 - 10:25:23 CDT)
  • Josh Vermaas (Tue Apr 18 2023 - 09:20:51 CDT)
  • Dominique Mias-Lucquin (Tue Apr 18 2023 - 08:10:33 CDT)
  • Dominique Mias-Lucquin (Tue Apr 18 2023 - 04:46:06 CDT)
  • Dominique Mias-Lucquin (Tue Apr 18 2023 - 03:27:39 CDT)
  • Josh Vermaas (Mon Apr 17 2023 - 12:59:42 CDT)
  • John Stone (Mon Apr 17 2023 - 11:04:54 CDT)
  • Vermaas, Josh (Fri Apr 14 2023 - 03:57:24 CDT)
  • Dominique Mias-Lucquin (Fri Apr 14 2023 - 02:41:53 CDT)
  • Vermaas, Josh (Thu Apr 13 2023 - 08:11:14 CDT)
  • Dominique Mias-Lucquin (Thu Apr 13 2023 - 05:05:45 CDT)
  • Axel Kohlmeyer (Wed Apr 12 2023 - 09:57:28 CDT)
  • Vermaas, Josh (Wed Apr 12 2023 - 09:30:56 CDT)
  • Dominique Mias-Lucquin (Wed Apr 12 2023 - 08:02:19 CDT)
• python create graphics molecule
  • Don Havelberg (Tue Mar 26 2002 - 17:19:02 CST)
  • Don Havelberg (Tue Mar 26 2002 - 17:16:00 CST)
  • Justin Gullingsrud (Tue Mar 26 2002 - 10:15:03 CST)
  • Don Havelberg (Tue Mar 26 2002 - 07:10:25 CST)
• Python development
  • Vasiliy S. Znamenskiy (Wed Jan 31 2007 - 07:15:13 CST)
  • Mikolai Fajer (Tue Jan 30 2007 - 21:27:05 CST)
  • Dr. Seth Olsen (Tue Jan 30 2007 - 19:51:12 CST)
  • John Stone (Tue Jan 30 2007 - 16:49:23 CST)
  • Mikolai Fajer (Mon Jan 29 2007 - 16:39:00 CST)
• python disabled
  • Justin Gullingsrud (Wed Jan 30 2002 - 14:51:03 CST)
  • Alexey Kozlenkov (Wed Jan 30 2002 - 14:53:54 CST)
• python disabled (still?)
  • John Stone (Sat May 22 2004 - 00:31:39 CDT)
  • Travis DePuy (Tue May 18 2004 - 10:49:17 CDT)
  • Travis DePuy (Tue May 18 2004 - 10:49:17 CDT)
• Python error
  • John Stone (Mon Sep 27 2004 - 13:49:25 CDT)
  • Vlad Cojocaru (Mon Sep 27 2004 - 12:33:47 CDT)
• python error?
  • Albert (Mon Apr 02 2012 - 14:17:08 CDT)
  • Axel Kohlmeyer (Mon Apr 02 2012 - 13:48:02 CDT)
  • Albert (Mon Apr 02 2012 - 11:28:14 CDT)
• Python for OS X
  • John Stone (Tue Jul 29 2008 - 14:09:57 CDT)
  • Axel Kohlmeyer (Sat Jul 26 2008 - 12:56:18 CDT)
  • Hans Martin Senn (Fri Jul 25 2008 - 10:19:38 CDT)
• Python interface (was: Accessing TCL through Python interface)
  • Justin Gullingsrud (Fri May 20 2005 - 14:30:06 CDT)
  • Daniel B. Faken (Fri May 20 2005 - 08:34:00 CDT)
• Python libraries for vmd: _tkinter was not enabled in Modules/Setup
  • Cojocaru,Vlad (Tue Dec 06 2005 - 14:45:55 CST)
• Python libs posted for VMD 1.8.4 users...
  • John Stone (Wed Apr 19 2006 - 20:33:15 CDT)
• python loop
  • Aitor Gonzalez (Fri Mar 16 2001 - 12:39:34 CST)
  • Justin Gullingsrud (Fri Mar 16 2001 - 12:23:18 CST)
  • Aitor Gonzalez (Fri Mar 16 2001 - 04:40:38 CST)
• python math library
  • John Stone (Sun Apr 16 2006 - 22:08:42 CDT)
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  • John Stone (Sun Apr 16 2006 - 00:34:52 CDT)
  • John Stone (Wed Apr 12 2006 - 22:09:14 CDT)
  • Grischa Meyer (Wed Apr 12 2006 - 21:57:19 CDT)
  • John Stone (Wed Apr 12 2006 - 21:25:37 CDT)
  • Justin Gullingsrud (Wed Apr 12 2006 - 19:02:22 CDT)
  • Grischa Meyer (Tue Apr 11 2006 - 23:50:22 CDT)
• Python Module
  • Harry Bullen (Fri Jun 08 2007 - 11:03:39 CDT)
  • John Stone (Fri Jun 08 2007 - 10:38:01 CDT)
  • Harry Bullen (Fri Jun 08 2007 - 08:40:36 CDT)
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  • Axel Kohlmeyer (Thu Jun 07 2007 - 17:50:14 CDT)
  • Harry Bullen (Thu Jun 07 2007 - 13:00:41 CDT)
• python Numeric library problem
  • John Stone (Fri Sep 28 2007 - 14:35:25 CDT)
  • Geoff Wood (Mon Sep 24 2007 - 15:05:54 CDT)
  • John Stone (Wed Apr 05 2006 - 20:21:52 CDT)
  • Sacerdoti, Federico (Wed Apr 05 2006 - 20:16:44 CDT)
  • John Stone (Tue Apr 04 2006 - 16:00:09 CDT)
  • Sacerdoti, Federico (Tue Apr 04 2006 - 11:11:16 CDT)
• Python on Intel Mac?
  • John Stone (Fri Oct 13 2006 - 14:12:10 CDT)
  • Michael Lerner (Thu Oct 12 2006 - 17:15:53 CDT)
  • John Stone (Thu Oct 12 2006 - 15:37:31 CDT)
  • Michael Lerner (Thu Oct 12 2006 - 13:25:01 CDT)
• python or Tcl/Tk
  • John Stone (Fri Jan 21 2005 - 17:27:24 CST)
  • Guanglei Cui (Fri Jan 21 2005 - 12:48:12 CST)
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• Python plans
  • John Stone (Wed Aug 01 2012 - 10:46:26 CDT)
  • John Stone (Fri Jul 27 2012 - 12:51:58 CDT)
  • Caio Silva Souza (Fri Jul 27 2012 - 12:46:27 CDT)
  • Caio Silva Souza (Fri Jul 27 2012 - 12:19:07 CDT)
  • John Stone (Fri Jul 27 2012 - 12:30:16 CDT)
  • John Stone (Fri Jul 27 2012 - 11:32:07 CDT)
  • John Stone (Fri Jul 27 2012 - 11:25:26 CDT)
  • John Stone (Fri Jul 27 2012 - 11:26:23 CDT)
  • Axel Kohlmeyer (Fri Jul 27 2012 - 02:39:48 CDT)
  • Olaf Lenz (Fri Jul 27 2012 - 01:36:50 CDT)
  • Caio Silva Souza (Thu Jul 26 2012 - 14:40:40 CDT)
  • Olaf Lenz (Wed Jul 25 2012 - 03:07:49 CDT)
  • John Stone (Tue Jul 24 2012 - 11:48:52 CDT)
  • Caio Silva Souza (Sat Jul 21 2012 - 18:47:13 CDT)
• python pro.align()
  • John Stone (Thu Mar 29 2007 - 16:22:23 CDT)
  • Per Jr. Greisen (Thu Mar 29 2007 - 12:27:21 CDT)
• python question
  • Justin Gullingsrud (Sat Aug 23 2003 - 21:34:10 CDT)
  • Alfredo Valles (Sat Aug 23 2003 - 09:41:37 CDT)
• python question 2
  • Justin Gullingsrud (Mon Aug 25 2003 - 10:09:54 CDT)
  • Alfredo Valles (Mon Aug 25 2003 - 04:02:10 CDT)
• python script failed
  • Caio S. Souza (Mon Nov 26 2012 - 07:15:14 CST)
  • Axel Kohlmeyer (Mon Nov 26 2012 - 05:52:09 CST)
  • Albert (Mon Nov 26 2012 - 04:44:12 CST)
• python script of atomsel expression
  • Justin Gullingsrud (Tue Feb 19 2002 - 10:47:58 CST)
  • Fei Xu (Tue Feb 19 2002 - 09:42:25 CST)
• Python script to fix autoionize issues related to long atom type names
  • Thomas C. Bishop (Wed Jun 27 2012 - 08:24:30 CDT)
  • Evgeny Bulat (Tue Jun 26 2012 - 16:42:37 CDT)
• python simple script
  • Jack Bulat (Mon Dec 24 2012 - 12:13:29 CST)
  • Jack Bulat (Fri Dec 21 2012 - 09:12:22 CST)
  • Adrian Jasiñski (Fri Dec 21 2012 - 04:52:41 CST)
• python support and pipes in vmd
  • Justin Gullingsrud (Tue Sep 30 2003 - 16:48:47 CDT)
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• Python text interpreter in VMD
  • Josh Vermaas (Tue Oct 21 2014 - 15:10:10 CDT)
  • Woodson, Michael (Tue Oct 21 2014 - 14:07:25 CDT)
  • Josh Vermaas (Tue Oct 21 2014 - 11:53:38 CDT)
  • Woodson, Michael (Tue Oct 21 2014 - 10:13:18 CDT)
• python vmd interface
  • Justin Gullingsrud (Thu Mar 29 2001 - 11:53:11 CST)
  • Aitor Gonzalez (Thu Mar 29 2001 - 08:57:32 CST)
• Python's future in VMD
  • Warren L. DeLano (Tue Sep 30 2003 - 20:38:19 CDT)
  • John Stone (Tue Sep 30 2003 - 12:30:15 CDT)
  • Andrew Dalke (Tue Sep 30 2003 - 12:19:46 CDT)
  • John Stone (Tue Sep 30 2003 - 10:14:34 CDT)
  • Alan Wilter Sousa da Silva (Tue Sep 30 2003 - 07:48:28 CDT)
  • Alfredo Valles (Tue Sep 30 2003 - 08:01:05 CDT)
  • Patrick Ladam (Tue Sep 30 2003 - 05:58:23 CDT)
• Python, Numeric, and Mac OS X problem
  • Jacinto S. (Fri Aug 26 2005 - 13:32:50 CDT)
  • John Stone (Fri Mar 18 2005 - 12:05:51 CST)
  • Florian Haberl (Mon Mar 14 2005 - 06:47:10 CST)
  • Eric Brown (Mon Mar 14 2005 - 06:14:29 CST)
  • Eric Brown (Mon Mar 14 2005 - 05:18:08 CST)
• Python, numpy, and so on ....
  • John Stone (Tue Mar 29 2005 - 13:54:50 CST)
  • Nuno R. L. Ferreira (Tue Mar 29 2005 - 05:42:23 CST)
• Python.h error when compile VMD-1.9.2
  • Josh Vermaas (Wed Aug 19 2015 - 09:29:31 CDT)
  • sunyeping (Tue Aug 18 2015 - 21:26:54 CDT)
• python2.3 and vmd
  • Lars Bruno Hansen (Fri Oct 29 2004 - 02:05:38 CDT)
  • Justin Gullingsrud (Fri Oct 29 2004 - 00:23:29 CDT)
  • Lars Bruno Hansen (Thu Oct 28 2004 - 05:04:06 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Oct 27 2004 - 11:43:43 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Oct 27 2004 - 11:36:35 CDT)
  • hinsen_at_llb.saclay.cea.fr (Wed Oct 27 2004 - 11:17:40 CDT)
  • Gustavo Mercier (Wed Oct 27 2004 - 07:59:54 CDT)
  • Justin Gullingsrud (Tue Oct 26 2004 - 18:38:05 CDT)
  • John Stone (Tue Oct 26 2004 - 13:25:45 CDT)
  • John Stone (Tue Oct 26 2004 - 13:18:13 CDT)
  • John Stone (Tue Oct 26 2004 - 12:59:48 CDT)
  • Warren DeLano (Tue Oct 26 2004 - 12:25:52 CDT)
  • hinsen_at_llb.saclay.cea.fr (Tue Oct 26 2004 - 11:07:07 CDT)
  • John Stone (Mon Oct 25 2004 - 13:37:31 CDT)
  • John Stone (Mon Oct 25 2004 - 13:28:44 CDT)
  • Jim Nettles (Sun Oct 24 2004 - 08:21:11 CDT)
  • hinsen_at_llb.saclay.cea.fr (Sun Oct 24 2004 - 03:47:15 CDT)
  • John Stone (Fri Oct 22 2004 - 15:40:26 CDT)
  • John Stone (Fri Oct 22 2004 - 13:49:56 CDT)
  • Lars Bruno Hansen (Fri Oct 22 2004 - 13:40:27 CDT)
  • John Stone (Fri Oct 22 2004 - 10:43:56 CDT)
  • Lars Bruno Hansen (Fri Oct 22 2004 - 03:05:16 CDT)
  • John Stone (Thu Oct 21 2004 - 10:56:29 CDT)
  • Lars Bruno Hansen (Thu Oct 21 2004 - 08:41:42 CDT)
• python: cannot find library
  • Justin Gullingsrud (Thu Aug 07 2003 - 09:40:55 CDT)
  • barrett (Thu Aug 07 2003 - 03:28:12 CDT)
  • Justin Gullingsrud (Wed Aug 06 2003 - 11:18:20 CDT)
  • Justin Gullingsrud (Wed Aug 06 2003 - 11:16:12 CDT)
  • John Stone (Wed Aug 06 2003 - 11:02:24 CDT)
  • barrett (Wed Aug 06 2003 - 04:53:06 CDT)
• python: error importing packages
  • John Stone (Tue Apr 08 2003 - 10:56:41 CDT)
  • Lars Bruno Hansen (Wed Apr 02 2003 - 06:22:56 CST)
• python: it doesnt work
  • Cojocaru,Vlad (Tue Dec 06 2005 - 16:34:13 CST)
• python: packages not found
  • Justin Gullingsrud (Tue Feb 04 2003 - 10:50:35 CST)
  • Oliver Beckstein (Tue Feb 04 2003 - 09:45:46 CST)
• python: packages not found also...
  • barrett (Mon Sep 08 2003 - 05:44:12 CDT)
  • Patrick Ladam (Tue Sep 02 2003 - 04:44:33 CDT)
• python: packages not found also...(FIXED, thanks John)
  • Patrick Ladam (Tue Sep 09 2003 - 05:14:14 CDT)
• python: packages not found also...(repost)
  • John Stone (Tue Sep 09 2003 - 02:10:39 CDT)
  • Patrick Ladam (Thu Sep 04 2003 - 07:28:17 CDT)
• Python: radius always 1 for cylinder and cones
  • Justin Gullingsrud (Wed Feb 06 2002 - 17:03:55 CST)
  • Fredrik Sjunnesson (Wed Feb 06 2002 - 16:04:13 CST)
• python: readline support
  • Oliver Beckstein (Tue Feb 04 2003 - 09:47:13 CST)
• PYTHONPATH Word too long
  • John Stone (Tue Jan 29 2013 - 10:56:02 CST)
  • francesco oteri (Tue Jan 29 2013 - 09:56:21 CST)
• pytjhon
  • John Stone (Tue Jan 24 2006 - 11:25:06 CST)
  • John M. Robinson (Mon Jan 23 2006 - 14:06:12 CST)
• pyvmd: Highlevel python library for VMD
  • Vlastimil Zíma (Wed Jun 08 2016 - 06:33:59 CDT)
• Q-chem MD output with VMD?
  • John Stone (Wed Sep 19 2012 - 10:50:54 CDT)
  • Benjamin Kaduk (Wed Sep 19 2012 - 09:07:18 CDT)
  • John Keller (Wed Sep 19 2012 - 01:53:38 CDT)
• q4md-forcefieldtools.org announcement
  • FyD (Fri Nov 25 2011 - 07:33:39 CST)
• Q: Compiling VMD on IRIX 6.5
  • John Stone (Mon Jul 01 2002 - 09:27:10 CDT)
  • ran friedman (Mon Jul 01 2002 - 09:07:30 CDT)
• Q: MO visualisation
  • Christoph Hagedorn (Thu Dec 14 2000 - 11:35:39 CST)
• Q:selection of atoms on the surface of a molecule
  • Mgr. Lubos Vrbka (Wed Mar 01 2006 - 00:44:11 CST)
  • John Stone (Tue Feb 28 2006 - 17:35:00 CST)
  • kovzany_at_go.com (Tue Feb 28 2006 - 17:22:13 CST)
• Q=80=9CGraphical_Representation=E2=80=9D_question_?=
  • Nuno Sousa Cerqueira (Tue Jul 12 2016 - 07:13:35 CDT)
• Q=9B=9E=E5=A4=8D=EF=BC=9A__by_using_Ax?= el's HOOMD plugin, convert pdb to xml and missing bond information
  • Darren Li (Mon Sep 26 2016 - 09:08:56 CDT)
• Q=B0startup.command=A1=B1_can=A1=AFt_be?= opened because CoreServicesUIAgent is not allowed to open documents in Terminal.
  • Ãç¼ÒÔ¶ (Fri Mar 27 2015 - 15:33:20 CDT)
• Q=BD=AC=E5=8F=91=EF=BC=9A__by_using_Ax?= el's HOOMD plugin, convert pdb to xml and missing bond information
  • Darren Li (Mon Sep 26 2016 - 01:45:01 CDT)
• QFilesize_limit_exceeded_(core_dumped)=94_with_VMD_on_?= Linux
  • Dourna Jamshideasli (Thu May 26 2022 - 11:21:50 CDT)
• QM Geometry optimization
  • Axel Kohlmeyer (Wed Dec 17 2008 - 13:53:09 CST)
  • bo baker (Wed Dec 17 2008 - 12:30:08 CST)
  • Axel Kohlmeyer (Wed Dec 17 2008 - 09:23:33 CST)
  • Peter Freddolino (Wed Dec 17 2008 - 08:57:05 CST)
  • bo baker (Tue Dec 16 2008 - 23:59:49 CST)
• QM_plugin_force_constants
  • Karol Kaszuba (Mon Dec 03 2007 - 06:41:24 CST)
• QMMM simulation orbitals visualization step by step
  • francisca andrea salas sepulveda (Tue Jan 11 2022 - 08:17:20 CST)
• QMMM Update
  • Mcguire, Kelly (Sun Oct 23 2022 - 11:53:16 CDT)
  • Mcguire, Kelly (Fri Oct 21 2022 - 14:45:18 CDT)
  • Bennion, Brian (Fri Oct 21 2022 - 14:44:12 CDT)
  • Mcguire, Kelly (Fri Oct 21 2022 - 14:42:37 CDT)
  • Mcguire, Kelly (Fri Oct 21 2022 - 14:42:53 CDT)
  • Mcguire, Kelly (Fri Oct 21 2022 - 11:36:06 CDT)
  • Mcguire, Kelly (Fri Oct 21 2022 - 11:41:42 CDT)
  • Mcguire, Kelly (Thu Oct 20 2022 - 20:29:15 CDT)
• QMtool gaussian 09
  • John Stone (Tue Feb 28 2017 - 17:05:43 CST)
  • MARIA JOSE ALIAGA GOSALVEZ (Sat Feb 18 2017 - 14:34:23 CST)
• qpt_conv command of Hole is interactive, how to automate it for multiple frames?
  • maria goranovic (Tue Jul 12 2011 - 14:22:35 CDT)
  • John Stone (Tue Jul 12 2011 - 13:08:13 CDT)
  • maria goranovic (Thu Jul 07 2011 - 05:21:00 CDT)
  • maria goranovic (Tue Jul 05 2011 - 10:05:55 CDT)
• QR factorization for structural alignment
  • Leonardo Trabuco (Fri Jul 11 2008 - 01:51:51 CDT)
  • Dong Xu (Thu Jul 10 2008 - 17:30:39 CDT)
  • Dong Xu (Sat Jul 05 2008 - 17:06:29 CDT)
• Qres portion of MultiSeq for vmd 1.9.2
  • Shyno Mathew (Fri Apr 15 2016 - 16:07:24 CDT)
  • Lai, Jonathan (Fri Apr 15 2016 - 15:47:58 CDT)
  • Shyno Mathew (Fri Apr 15 2016 - 14:49:45 CDT)
  • Shyno Mathew (Wed Apr 13 2016 - 20:26:51 CDT)
• qsub (torque/maui) and vmd
  • Gordon Wells (Tue Sep 05 2006 - 02:09:09 CDT)
  • Leonardo Trabuco (Mon Sep 04 2006 - 22:47:19 CDT)
  • John Stone (Mon Sep 04 2006 - 22:38:40 CDT)
  • Axel Kohlmeyer (Mon Sep 04 2006 - 14:00:38 CDT)
  • Gordon Wells (Mon Sep 04 2006 - 13:01:42 CDT)
  • Axel Kohlmeyer (Mon Sep 04 2006 - 11:18:05 CDT)
  • Gordon Wells (Mon Sep 04 2006 - 09:31:33 CDT)
  • Neelanjana Sengupta (Mon Sep 04 2006 - 09:02:16 CDT)
  • Gordon Wells (Mon Sep 04 2006 - 08:25:54 CDT)
• Qtight=22?= selection
  • ziemys_at_ecr6.ohio-state.edu (Mon Jun 05 2006 - 15:36:37 CDT)
• Quad buffered stereo from Quadro M4000 to HDMI monitor
  • John Stone (Thu Jan 12 2017 - 12:20:50 CST)
  • Vlad Cojocaru (Wed Jan 11 2017 - 04:15:32 CST)
• Quadro 750 XGL problem
  • John Stone (Tue Sep 21 2004 - 09:56:16 CDT)
  • John Stone (Mon Sep 20 2004 - 09:44:11 CDT)
  • Sylvain EDALEINE (Mon Sep 20 2004 - 09:38:22 CDT)
• Quadro FX1800 , Stereo and VMD
  • Jacob Story (Fri Jul 08 2011 - 13:35:44 CDT)
  • Jacob Story (Fri Jul 08 2011 - 13:04:21 CDT)
  • Vlad Cojocaru (Fri Jul 08 2011 - 12:00:49 CDT)
  • Vlad Cojocaru (Fri Jul 08 2011 - 12:00:23 CDT)
  • Vlad Cojocaru (Fri Jul 08 2011 - 11:49:09 CDT)
  • Jacob Story (Fri Jul 08 2011 - 11:23:30 CDT)
  • Vlad Cojocaru (Fri Jul 08 2011 - 11:26:17 CDT)
  • John Stone (Fri Jul 08 2011 - 11:38:42 CDT)
  • John Stone (Fri Jul 08 2011 - 10:41:12 CDT)
  • Vlad Cojocaru (Fri Jul 08 2011 - 09:25:33 CDT)
• Quality of color scale bar when creating images for publication
  • John Stone (Tue Aug 27 2013 - 11:36:54 CDT)
  • Holger Scheib (Sat Aug 24 2013 - 02:44:47 CDT)
• quality rendering
  • Eduard Schreiner (Thu Jul 14 2005 - 01:46:46 CDT)
  • Herbert Georg (Wed Jul 13 2005 - 15:27:44 CDT)
• Quantitative meaning of volmap isosurface
  • John Stone (Wed Feb 01 2012 - 14:19:18 CST)
  • Axel Kohlmeyer (Tue Jan 31 2012 - 07:25:02 CST)
  • Benjamin Hall (Tue Jan 31 2012 - 07:32:50 CST)
  • Ben Hall (Tue Jan 31 2012 - 06:01:20 CST)
• Queries on making polymer
  • John Stone (Fri Jul 07 2006 - 13:37:40 CDT)
  • Naser, Md Abu (Thu Jul 06 2006 - 14:42:49 CDT)
• Querry
  • dipti lele (Tue Oct 21 2008 - 08:42:18 CDT)
• Query
  • John Stone (Tue Jul 29 2008 - 13:13:24 CDT)
  • Kaur, Tarandeep (Tue Jul 29 2008 - 07:55:49 CDT)
  • Wei Chen (Thu Jun 09 2005 - 13:54:59 CDT)
  • Tamal Banerjee (Thu Jun 09 2005 - 01:34:58 CDT)
• query about "ViewChangeRender" plugin
  • harish vashisth (Tue Oct 11 2011 - 10:42:09 CDT)
  • harish vashisth (Mon Oct 10 2011 - 17:04:45 CDT)
• Query about PME data in .dx format
  • Peter Mawanga (Fri Sep 14 2018 - 10:55:42 CDT)
  • Giacomo Fiorin (Fri Sep 14 2018 - 08:44:08 CDT)
  • Peter Mawanga (Fri Sep 14 2018 - 04:32:10 CDT)
• query about the force field toolkit
  • Ajasja LjubetiÄ� (Tue Dec 02 2014 - 03:58:11 CST)
  • Kshatresh Dutta Dubey (Tue Dec 02 2014 - 02:56:45 CST)
• Query about the NAMD user forum
  • Ajasja LjubetiÄ� (Wed Nov 12 2014 - 04:12:23 CST)
  • Kshatresh Dutta Dubey (Wed Nov 12 2014 - 03:27:12 CST)
• Query Fields
  • John Stone (Wed Feb 01 2012 - 13:58:00 CST)
  • Joseph Bylund (Tue Jan 31 2012 - 08:32:40 CST)
• Query for coarse grain system
  • Abhishek TYAGI (Thu Apr 05 2018 - 09:53:36 CDT)
• Query for eliminating proteins with unusual amino acids
  • Tristan Croll (Thu Nov 05 2015 - 22:37:24 CST)
  • Akshay Bhatnagar (Thu Nov 05 2015 - 22:24:24 CST)
  • Akshay Bhatnagar (Thu Nov 05 2015 - 18:25:59 CST)
  • Tristan Croll (Thu Nov 05 2015 - 16:28:31 CST)
  • Akshay Bhatnagar (Wed Nov 04 2015 - 23:46:02 CST)
• Query for the VolMap plugin
  • Giacomo Fiorin (Thu Mar 15 2018 - 09:09:18 CDT)
  • Giacomo Fiorin (Thu Mar 15 2018 - 08:39:14 CDT)
  • Saikat Pal (Thu Mar 15 2018 - 07:16:49 CDT)
• query on centering the pbc and cut the shell
  • Santhosh Ranga (Thu Oct 17 2019 - 08:28:53 CDT)
• Query on GPI-anchor proteins
  • Aditya Padhi (Tue Jun 16 2015 - 14:03:15 CDT)
• query on how to allow the protein to interact with the water molecules
  • Joao Ribeiro (Tue Oct 08 2019 - 09:01:51 CDT)
  • James Kress (Mon Oct 07 2019 - 10:06:23 CDT)
  • Adupa Vasista (Mon Oct 07 2019 - 02:26:32 CDT)
  • Santhosh Ranga (Sun Oct 06 2019 - 23:45:36 CDT)
• Query on introducing a protein
  • Aditya Padhi (Tue Feb 04 2014 - 23:12:10 CST)
• Query on networkview plugin
  • Sruthi Sudhakar (Fri Jul 26 2024 - 07:13:21 CDT)
• Query on preferred encoder/settings for producing MPEG files
  • Dallas Warren (Mon Oct 28 2019 - 19:08:59 CDT)
  • Vermaas, Joshua (Sun Oct 27 2019 - 13:35:12 CDT)
  • Nathan Kern (Sun Oct 27 2019 - 11:22:36 CDT)
  • GRANT KENNY (Sun Oct 27 2019 - 10:00:27 CDT)
• Query regarding 'Protein:ligand Standard Binding Free Energies' tutorial
  • Faisal, H M Nasrullah (Tue Dec 22 2020 - 14:39:15 CST)
• Query regarding contact map
  • Saikat Pal (Sat Feb 23 2019 - 00:18:40 CST)
  • Saikat Pal (Wed Feb 20 2019 - 22:56:10 CST)
• Query regarding getting intial configuration of laponite clay!!
  • Siddharth Subramanian (Sat Jun 22 2013 - 12:19:33 CDT)
• Query regarding H-bond
  • Vermaas, Joshua (Mon Apr 29 2019 - 11:17:35 CDT)
  • Roshan Shrestha (Sat Apr 27 2019 - 08:45:33 CDT)
  • Saikat Pal (Sat Apr 27 2019 - 08:06:19 CDT)
• query regarding membrane building
  • kalyan chaitanya (Sat Sep 29 2007 - 22:58:45 CDT)
  • L. Michel Espinoza-Fonseca (Sat Sep 29 2007 - 14:05:01 CDT)
  • kalyan chaitanya (Sat Sep 29 2007 - 09:41:14 CDT)
• Query regarding merging structures in vmd!!
  • Siddharth Subramanian (Fri Jun 14 2013 - 04:52:55 CDT)
• query regarding phi-psi range for asigning secondary structure
  • Atanu Maity (Fri Oct 09 2015 - 04:44:24 CDT)
  • Atanu Maity (Fri Oct 09 2015 - 01:43:43 CDT)
• Query regarding qwrap
  • Jérôme Hénin (Wed Apr 17 2019 - 01:59:02 CDT)
  • Angana Ray (Tue Apr 16 2019 - 14:20:04 CDT)
  • Jérôme Hénin (Tue Apr 16 2019 - 02:57:13 CDT)
• Query regarding RMSD calculcation
  • John Stone (Tue Oct 12 2010 - 15:25:35 CDT)
  • hirdesh kumar (Tue Oct 05 2010 - 00:50:32 CDT)
• Query regarding WISP extension in VMD
  • Giacomo Fiorin (Thu Oct 06 2022 - 08:52:32 CDT)
  • Sruthi Sudhakar (Thu Oct 06 2022 - 01:31:58 CDT)
• Querying Residue Numbers that are Alphanumeric
  • Wallace Chan (Fri Sep 06 2019 - 12:56:35 CDT)
• question
  • John Stone (Mon Nov 15 1999 - 09:16:50 CST)
  • Deepak Singh (Sun Nov 14 1999 - 17:00:26 CST)
  • John Stone (Tue Apr 16 2019 - 09:09:27 CDT)
  • Ajasja LjubetiÄ� (Tue Apr 16 2019 - 00:00:41 CDT)
  • Vermaas, Joshua (Sat Apr 13 2019 - 13:36:35 CDT)
  • Cristian Bogaciu (Fri Apr 12 2019 - 20:44:32 CDT)
  • Axel Kohlmeyer (Sun Nov 04 2018 - 18:56:26 CST)
  • McGuire, Kelly (Sun Nov 04 2018 - 17:16:27 CST)
  • Eric Smoll (Mon Dec 15 2014 - 14:20:04 CST)
  • Axel Kohlmeyer (Thu Nov 20 2008 - 11:55:59 CST)
  • Wojciech Rajchel (Thu Nov 20 2008 - 11:08:31 CST)
  • Stéphane Teletchéa (Fri Apr 21 2006 - 03:54:28 CDT)
  • Maria Konstantakaki (Thu Apr 20 2006 - 10:38:20 CDT)
  • John Stone (Tue Jul 15 2003 - 17:08:58 CDT)
  • Ioana Cozmuta (Tue Jul 15 2003 - 16:58:45 CDT)
  • John Stone (Tue Jul 15 2003 - 16:33:13 CDT)
  • Ioana Cozmuta (Tue Jul 15 2003 - 16:22:42 CDT)
• question about "measure dihed" with COM points
  • J T (Wed Feb 25 2009 - 14:43:01 CST)
  • Hwankyu Lee (Wed Feb 25 2009 - 14:55:39 CST)
  • Lee, Hwan Kyu (NIH/NHLBI) [E] (Wed Feb 25 2009 - 13:35:07 CST)
  • Lee, Hwan Kyu (NIH/NHLBI) [E] (Wed Feb 25 2009 - 12:55:38 CST)
  • J T (Tue Feb 24 2009 - 21:37:21 CST)
  • Axel Kohlmeyer (Tue Feb 24 2009 - 19:51:15 CST)
  • Lee, Hwan Kyu (NIH/NHLBI) [E] (Tue Feb 24 2009 - 19:09:27 CST)
• Question about "orient" script
  • John Stone (Tue Jun 21 2011 - 13:15:44 CDT)
  • Masaki UNNO (Thu Jun 16 2011 - 04:33:51 CDT)
• question about "then: then/endif not found" in the start VMD.
  • John Stone (Fri Dec 16 2005 - 13:17:28 CST)
  • Cheng Luo, Ph.D. (Fri Dec 16 2005 - 11:52:18 CST)
• question about 'measure bond'
  • Axel Kohlmeyer (Fri Feb 01 2008 - 09:46:30 CST)
  • MW Van der Kamp, School of Chemistry (Fri Feb 01 2008 - 09:21:20 CST)
• Question about .vmdsensors configuration
  • John Stone (Thu Aug 11 2005 - 09:48:32 CDT)
  • leepersonpp (Thu Aug 11 2005 - 05:47:19 CDT)
• question about an error in QuickMD
  • soodabeh ghaffari (Wed Jan 29 2020 - 16:13:01 CST)
  • Joao Ribeiro (Wed Jan 29 2020 - 15:54:30 CST)
  • Joao Ribeiro (Wed Jan 29 2020 - 16:11:01 CST)
  • soodabeh ghaffari (Wed Jan 29 2020 - 16:05:13 CST)
  • soodabeh ghaffari (Wed Jan 29 2020 - 15:23:20 CST)
  • Joao Ribeiro (Wed Jan 29 2020 - 15:38:58 CST)
• question about atomselect and periodic condition
  • Axel Kohlmeyer (Fri Jul 24 2009 - 09:17:13 CDT)
  • Linchen Gong (Fri Jul 24 2009 - 05:44:41 CDT)
• Question about autopsf
  • Peter Freddolino (Tue Jan 22 2008 - 20:00:40 CST)
  • Lucas Fernández Seivane (Tue Jan 22 2008 - 16:07:50 CST)
  • Lucas Fernández Seivane (Tue Jan 22 2008 - 13:39:06 CST)
  • Peter Freddolino (Tue Jan 22 2008 - 14:26:25 CST)
• question about Ca-dist.tcl
  • dhacademic (Wed Sep 01 2010 - 10:14:24 CDT)
• Question about code
  • Jason Smith (Sun Dec 04 2022 - 15:25:23 CST)
  • Raag Saluja (Sun Dec 04 2022 - 13:43:40 CST)
• question about CUDA-enabled
  • Ashar Malik (Mon Nov 24 2014 - 03:45:07 CST)
  • maryam atabay (Mon Nov 24 2014 - 03:08:43 CST)
• Question about dihedral angles in VMD.
  • Justin Gullingsrud (Wed Aug 07 2002 - 15:29:38 CDT)
  • Joe Huang (Wed Aug 07 2002 - 15:01:06 CDT)
• Question about Drude polarizable model
  • David Hardy (Tue Jul 24 2012 - 12:19:41 CDT)
  • John Stone (Tue Jul 24 2012 - 11:36:44 CDT)
  • Ganesh Kamath (Tue Jul 24 2012 - 11:19:03 CDT)
• question about electrostatic map visualizing
  • Cristina (Tue Oct 26 2004 - 13:00:13 CDT)
  • John Stone (Mon Oct 25 2004 - 13:27:12 CDT)
  • Cristina (Sat Sep 04 2004 - 11:02:47 CDT)
• question about electrostatic potential maps
  • Jeffrey A Tibbitt (Thu Mar 02 2006 - 12:02:01 CST)
  • John Stone (Wed Mar 01 2006 - 16:50:00 CST)
  • John Stone (Wed Mar 01 2006 - 09:50:47 CST)
  • ivana adamovic (Wed Mar 01 2006 - 09:43:15 CST)
  • ivana adamovic (Tue Feb 28 2006 - 09:48:47 CST)
  • ivana adamovic (Tue Feb 28 2006 - 09:47:44 CST)
  • Vlad Cojocaru (Tue Feb 28 2006 - 04:12:02 CST)
  • John Stone (Mon Feb 27 2006 - 16:06:56 CST)
  • ivana adamovic (Mon Feb 27 2006 - 12:19:48 CST)
• Question about error while using QwikMD files
  • Mariano Spivak (Fri Dec 24 2021 - 17:11:54 CST)
  • Ahmad Alqaisi (Fri Dec 24 2021 - 15:25:30 CST)
  • John Stone (Mon May 10 2021 - 11:25:30 CDT)
  • Mariano Spivak (Mon May 10 2021 - 10:48:21 CDT)
  • Ahmad Alqaisi (Mon May 10 2021 - 03:12:25 CDT)
• Question about eval
  • Pavan Ghatty (Tue Jul 26 2011 - 11:14:15 CDT)
  • John Stone (Tue Jul 26 2011 - 11:40:45 CDT)
  • Pavan Ghatty (Tue Jul 26 2011 - 08:45:56 CDT)
  • Axel Kohlmeyer (Mon Jul 25 2011 - 14:33:37 CDT)
  • Pavan Ghatty (Mon Jul 25 2011 - 13:51:53 CDT)
• Question about fftk
  • JC Gumbart (Sun Oct 15 2017 - 07:24:45 CDT)
  • JC Gumbart (Tue Oct 10 2017 - 18:12:32 CDT)
  • Luba Simhaev (Tue Oct 10 2017 - 15:52:41 CDT)
  • John Stone (Wed Oct 03 2012 - 13:57:11 CDT)
  • John Stone (Wed Oct 03 2012 - 11:20:40 CDT)
  • Carolina Penhavel de souza (Wed Oct 03 2012 - 09:19:55 CDT)
  • Him Bandhu Upadhyay (Tue Oct 02 2012 - 14:55:30 CDT)
  • Him Bandhu Upadhyay (Tue Oct 02 2012 - 14:16:53 CDT)
  • ehsan zahedinejad (Tue Oct 02 2012 - 11:05:35 CDT)
  • Carolina Penhavel de souza (Tue Oct 02 2012 - 08:26:12 CDT)
• Question about FFTK charge optimization procedure to CGENFF modeling
  • Alexandre Suman de Araujo (Tue May 14 2013 - 08:12:10 CDT)
  • Mayne, Christopher G (Sat May 04 2013 - 09:37:11 CDT)
  • Alexandre Suman de Araujo (Fri May 03 2013 - 15:40:41 CDT)
• Question about generating a .js file
  • Chris Harrison (Thu Sep 20 2012 - 18:25:22 CDT)
  • Ganesh Kamath (Thu Sep 20 2012 - 17:25:29 CDT)
  • John Stone (Thu Sep 20 2012 - 17:08:11 CDT)
  • Ganesh Kamath (Fri Sep 07 2012 - 09:57:39 CDT)
• Question about geometrical figures
  • Felix Rodrigues Gulias (Fri Feb 01 2008 - 11:03:42 CST)
  • Axel Kohlmeyer (Fri Feb 01 2008 - 11:28:35 CST)
• question about gofr
  • Axel Kohlmeyer (Sat Mar 17 2007 - 15:48:44 CDT)
  • lanhua (Sat Mar 17 2007 - 14:30:31 CDT)
• Question about Gromacs box size in VMD.....
  • Olaf Lenz (Thu Jan 03 2008 - 08:38:47 CST)
  • Axel Kohlmeyer (Thu Jan 03 2008 - 08:24:07 CST)
  • Sergio Garay (Thu Jan 03 2008 - 07:27:37 CST)
• Question about H-bond plugin
  • flavio seixas (Mon Jul 30 2012 - 15:36:06 CDT)
• question about hbonds in vmd tutorial Version 1.9.2beta1
  • Josh Vermaas (Mon Sep 15 2014 - 12:10:47 CDT)
  • maryam atabay (Mon Sep 15 2014 - 01:45:26 CDT)
  • maryam atabay (Mon Sep 15 2014 - 01:37:59 CDT)
  • maryam atabay (Mon Sep 15 2014 - 00:46:31 CDT)
• Question about introducing variables in "mol selection..."
  • Axel Kohlmeyer (Fri May 22 2009 - 11:34:03 CDT)
  • Peter Freddolino (Fri May 22 2009 - 10:18:59 CDT)
  • Alberto Sergio Garay (Fri May 22 2009 - 10:06:54 CDT)
• question about ionization
  • John Stone (Wed Nov 07 2007 - 20:17:54 CST)
  • Anatoliy (Wed Nov 07 2007 - 12:10:12 CST)
• Question about Keyboaerd events send from other PC
  • John Stone (Thu Nov 05 2009 - 08:46:50 CST)
  • Christian Wohlschlager (Thu Nov 05 2009 - 02:29:36 CST)
• question about ligand volmap
  • Jordi Cohen (Wed Jun 27 2007 - 11:29:31 CDT)
  • Rachel (Tue Jun 26 2007 - 10:56:34 CDT)
• question about making movies
  • John Stone (Wed May 16 2007 - 14:44:17 CDT)
  • Axel Kohlmeyer (Wed May 16 2007 - 13:39:13 CDT)
  • Kailee (Wed May 16 2007 - 11:49:50 CDT)
• Question about measure cluster
  • Axel Kohlmeyer (Mon Jan 20 2014 - 10:39:45 CST)
  • manali_at_bioinfo.net.in (Mon Jan 20 2014 - 10:17:39 CST)
  • Axel Kohlmeyer (Mon Jan 20 2014 - 09:18:45 CST)
  • Axel Kohlmeyer (Mon Jan 20 2014 - 06:48:35 CST)
  • manali_at_bioinfo.net.in (Mon Jan 20 2014 - 05:43:39 CST)
  • manali_at_bioinfo.net.in (Mon Jan 20 2014 - 05:43:39 CST)
• question about measure contacts
  • Justin Gullingsrud (Thu Aug 02 2007 - 15:16:01 CDT)
  • Rachel (Thu Aug 02 2007 - 12:31:33 CDT)
  • Rachel (Tue Jul 31 2007 - 08:42:57 CDT)
• Question about measure gofr
  • Jennie Thomas (Fri Oct 06 2006 - 15:36:16 CDT)
  • Axel Kohlmeyer (Fri Oct 06 2006 - 12:54:58 CDT)
  • Jennie Thomas (Fri Oct 06 2006 - 12:02:43 CDT)
• Question about NAMD configuration files
  • Rafael Bernardi (Sat Jan 16 2021 - 14:29:33 CST)
  • Jason Smith (Fri Jan 15 2021 - 22:17:41 CST)
  • Tiglath Moradkhan (Fri Jan 15 2021 - 18:37:04 CST)
• Question about Network Analysis tutorial
  • chanyann06_at_stu.scu.edu.cn (Fri Jul 29 2022 - 07:12:07 CDT)
• Question about NMD file visualization
  • Sruthi Sudhakar (Sun Feb 26 2023 - 04:18:50 CST)
• QUESTION about NMWizad
  • John Stone (Mon Oct 03 2016 - 15:39:24 CDT)
  • Guo, Jiasen (MU-Student) (Thu Sep 29 2016 - 18:33:41 CDT)
• Question about overlaying structures
  • John Stone (Tue Mar 27 2007 - 13:06:33 CDT)
  • Kara Di Giorgio (Tue Mar 27 2007 - 12:30:06 CDT)
  • John Stone (Thu Mar 15 2007 - 22:16:12 CDT)
  • Kara Di Giorgio (Thu Mar 15 2007 - 21:16:26 CDT)
• question about periodicity
  • John Stone (Tue Apr 22 2003 - 13:57:56 CDT)
  • Ioana Cozmuta (Mon Apr 21 2003 - 13:38:49 CDT)
• question about point substitution A$B"*(BU
  • Vermaas, Joshua (Tue Jan 02 2018 - 10:48:52 CST)
• question about point substitution A→U
  • parinaz bashirbanaem (Sat Dec 30 2017 - 12:32:03 CST)
• Question about PSF generation
  • Axel Kohlmeyer (Sun Sep 20 2009 - 13:34:12 CDT)
  • Schreiner Eduard (Sun Sep 20 2009 - 12:04:52 CDT)
  • NAMITA BHADRA (Sun Sep 20 2009 - 08:50:18 CDT)
  • John Stone (Thu Sep 10 2009 - 11:04:05 CDT)
  • NAMITA BHADRA (Tue Sep 08 2009 - 23:01:53 CDT)
• question about psfgen
  • Peter Freddolino (Thu Apr 06 2006 - 15:40:05 CDT)
  • Margaret Shun Cheung (Thu Apr 06 2006 - 14:50:58 CDT)
  • Margaret Shun Cheung (Thu Apr 06 2006 - 14:11:54 CDT)
  • Margaret Shun Cheung (Thu Apr 06 2006 - 13:45:26 CDT)
  • Peter Freddolino (Thu Apr 06 2006 - 13:34:49 CDT)
  • Margaret Shun Cheung (Thu Apr 06 2006 - 13:18:34 CDT)
  • Marcos Sotomayor (Thu Apr 06 2006 - 13:28:47 CDT)
  • Marcos Sotomayor (Thu Apr 06 2006 - 00:02:47 CDT)
  • John Stone (Wed Apr 05 2006 - 22:57:32 CDT)
  • Margaret Shun Cheung (Tue Apr 04 2006 - 16:23:25 CDT)
• Question about Python and Mac osx
  • John Stone (Sat Jan 10 2004 - 17:32:00 CST)
  • simon stockes (Thu Jan 08 2004 - 17:06:00 CST)
• question about RDF
  • parinaz bashirbanaem (Fri Feb 19 2021 - 11:19:36 CST)
  • parinaz bashirbanaem (Fri Feb 19 2021 - 10:46:32 CST)
• Question about RDF of VMD
  • Axel Kohlmeyer (Sat Feb 24 2007 - 21:25:14 CST)
  • Jianhui Tian (Sat Feb 24 2007 - 20:33:13 CST)
• question about reading more volumes via atomselect or removing of them
  • John Stone (Wed Jan 13 2016 - 13:38:27 CST)
  • Daniel Möller (Wed Jan 13 2016 - 08:33:13 CST)
• Question about reflecting wall in NAMD
  • Axel Kohlmeyer (Fri Aug 31 2012 - 10:17:55 CDT)
  • Ganesh Kamath (Fri Aug 31 2012 - 09:21:29 CDT)
• Question about rendering across multiple frames
  • John Stone (Mon Jun 11 2007 - 15:33:26 CDT)
  • Prashanth Athri (Mon Jun 11 2007 - 13:51:29 CDT)
• question about rendering images
  • John Stone (Wed Sep 22 2004 - 17:07:11 CDT)
  • cpao_at_Princeton.EDU (Wed Sep 22 2004 - 16:54:38 CDT)
• Question about RMSD calculator
  • Dan Wright (Tue Dec 12 2006 - 16:20:58 CST)
  • John Stone (Tue Dec 12 2006 - 13:50:47 CST)
  • Kara Di Giorgio (Tue Dec 12 2006 - 13:16:32 CST)
• question about rotations
  • John Stone (Fri Feb 09 2007 - 18:02:33 CST)
  • Adrian Roitberg (Fri Feb 09 2007 - 08:33:34 CST)
• Question about running script for hydrogen bonding analysis
  • Daniel Adrion (Sat Oct 29 2022 - 09:04:33 CDT)
• Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...)
  • Axel Kohlmeyer (Fri Oct 16 2009 - 18:25:07 CDT)
  • Alberto Sergio Garay (Fri Oct 16 2009 - 17:48:04 CDT)
• Question about SASA
  • John Stone (Fri Apr 15 2011 - 16:03:05 CDT)
  • Sebastian Maximilian Wilhelm (Thu Apr 14 2011 - 10:31:34 CDT)
• question about script for drawing dipole moment for helix
  • John Stone (Mon Jan 09 2006 - 11:08:54 CST)
  • jz7_at_duke.edu (Tue Jan 03 2006 - 17:39:32 CST)
• Question about secondary structure analysis
  • John Stone (Fri Sep 17 2021 - 22:43:04 CDT)
  • Runak R (Mon Sep 13 2021 - 11:36:43 CDT)
• question about selection
  • Andrew Dalke (Thu Sep 04 2003 - 18:57:00 CDT)
  • Ioana Cozmuta (Thu Sep 04 2003 - 17:10:41 CDT)
• question about setting variables in a loop
  • Peter Freddolino (Tue Jan 09 2007 - 09:49:21 CST)
  • Brian Kidd (Mon Jan 08 2007 - 22:01:12 CST)
• question about sscache
  • qwang_at_mail.uh.edu (Mon Sep 29 2008 - 11:44:35 CDT)
  • John Stone (Mon Sep 29 2008 - 10:03:46 CDT)
  • Margaret S. Cheung (Sun Sep 28 2008 - 21:04:56 CDT)
  • qwang_at_mail.uh.edu (Sun Sep 28 2008 - 19:33:02 CDT)
  • Alexander A. Vakhrushev (Fri Sep 26 2008 - 22:41:50 CDT)
  • qwang_at_mail.uh.edu (Fri Sep 26 2008 - 14:00:07 CDT)
• Question About Tcl variables
  • Axel Kohlmeyer (Wed Aug 16 2006 - 19:36:28 CDT)
  • Leonardo Sepulveda Durán (Wed Aug 16 2006 - 16:41:46 CDT)
• question about the definition of secondary motiffs
  • John Stone (Thu Apr 08 2004 - 16:57:13 CDT)
  • weiz (Mon Apr 05 2004 - 19:44:44 CDT)
• question about the inorganic builder
  • Robert Brunner (Tue Mar 01 2011 - 14:15:25 CST)
  • Mao Mao (Tue Mar 01 2011 - 11:30:53 CST)
• Question about the Main Menu window display
  • Alfredo Quevedo (Wed Oct 15 2008 - 13:31:58 CDT)
  • Axel Kohlmeyer (Fri Oct 10 2008 - 14:47:28 CDT)
  • Alfredo Quevedo (Fri Oct 10 2008 - 14:15:47 CDT)
• Question about trace vmd_frame(molid)
  • Axel Kohlmeyer (Fri Aug 15 2008 - 13:55:54 CDT)
  • Oren Elrad (Fri Aug 15 2008 - 13:24:25 CDT)
  • Axel Kohlmeyer (Fri Aug 15 2008 - 12:12:03 CDT)
  • Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
• Question about using fftk with files from QM calculations from Gaussian 16
  • Mariano Spivak (Mon May 15 2023 - 13:22:50 CDT)
  • Matteo Lambrughi (Thu May 11 2023 - 02:52:31 CDT)
• question about using namdenergy.tcl with vmd -dispdev text -e *.tcl
  • Margaret.Cheung_at_mail.uh.edu (Fri Jul 25 2008 - 18:41:40 CDT)
  • Peter Freddolino (Fri Jul 25 2008 - 17:31:16 CDT)
  • Margaret S. Cheung (Fri Jul 25 2008 - 08:38:20 CDT)
• Question about using psfgen on protein 4HVP
  • Justin Gullingsrud (Tue Oct 26 2004 - 18:46:21 CDT)
  • Brian Bennion (Tue Oct 26 2004 - 15:02:51 CDT)
  • jin (Tue Oct 26 2004 - 11:39:16 CDT)
• Question about vdW-area
  • Sebastian Maximilian Wilhelm (Wed Mar 16 2011 - 12:40:43 CDT)
• question about visualization
  • John Stone (Tue Aug 29 2006 - 12:58:40 CDT)
  • Sandra Bennun Serrano (Tue Aug 29 2006 - 12:44:58 CDT)
• Question about visualization of multiple frame xyz file
  • Axel Kohlmeyer (Mon Jul 27 2015 - 12:31:11 CDT)
  • JeJoon Yeon (Mon Jul 27 2015 - 12:16:13 CDT)
  • Axel Kohlmeyer (Sun Jul 26 2015 - 23:05:42 CDT)
  • JeJoon Yeon (Sun Jul 26 2015 - 22:17:10 CDT)
• question about vmd use
  • Bjoern Olausson (Mon Apr 12 2010 - 06:16:42 CDT)
  • Axel Kohlmeyer (Fri Apr 09 2010 - 04:42:49 CDT)
  • Knut Jørgen Bjuland (Fri Apr 09 2010 - 02:26:32 CDT)
• Question about vrpn server build for using Phantom with VMD
  • John Stone (Tue Jul 13 2010 - 15:13:23 CDT)
  • Jeffrey Sanders (Tue Jul 13 2010 - 15:05:58 CDT)
• question about water sphere script
  • Anatoliy (Mon Nov 05 2007 - 11:21:54 CST)
• question concerning measure gofr
  • Axel Kohlmeyer (Tue Jun 25 2013 - 12:01:22 CDT)
  • Philippe Bopp (Tue Jun 25 2013 - 11:14:51 CDT)
• Question for Installing Plugin for VMD on Mac
  • Oscar Bastidas (Sun Oct 06 2019 - 12:41:08 CDT)
• question from a tutorial
  • Lisa Brown (Thu Jan 20 2011 - 14:17:29 CST)
• question of iso-surface in VMD graphical representations
  • HeeSung Choi (Thu Mar 12 2009 - 14:13:42 CDT)
  • HeeSung Choi (Thu Mar 12 2009 - 13:04:01 CDT)
  • John Stone (Thu Mar 12 2009 - 13:17:23 CDT)
• question of PBC
  • Marc Q. Ma (Wed Feb 23 2005 - 11:45:36 CST)
  • Margaret Shun Cheung (Wed Feb 23 2005 - 09:42:45 CST)
• question on "Recompile VMD with larger index types"
  • PaweÅ‚ KÄ™dzierski (Wed Sep 28 2011 - 08:17:35 CDT)
  • Axel Kohlmeyer (Wed Sep 28 2011 - 05:44:13 CDT)
  • JhonY. I. (Wed Sep 28 2011 - 00:50:33 CDT)
• question on color assignment on trajectories
  • Axel Kohlmeyer (Mon Nov 15 2010 - 22:06:45 CST)
  • JhonY. I. (Mon Nov 15 2010 - 20:29:49 CST)
• question on Force
  • John Stone (Wed Mar 12 2003 - 17:18:12 CST)
  • Ioana Cozmuta (Wed Mar 12 2003 - 14:36:26 CST)
  • John Stone (Wed Mar 12 2003 - 14:27:54 CST)
  • Ioana Cozmuta (Thu Mar 06 2003 - 21:59:48 CST)
• question on increasing font size on VMD main menu
  • Axel Kohlmeyer (Sat Apr 30 2022 - 15:18:13 CDT)
  • Lei Qian (Sat Apr 30 2022 - 12:21:13 CDT)
• question on ion size
  • John Stone (Mon Nov 01 2004 - 18:09:26 CST)
  • Hyonseok Hwang (Mon Nov 01 2004 - 17:53:29 CST)
• question on prmtop & prmcrd from leap (amber)
  • B. Bennion (Fri Oct 18 2002 - 18:13:43 CDT)
  • Sichun Yang (Fri Oct 18 2002 - 16:17:46 CDT)
  • Sichun Yang (Fri Oct 18 2002 - 16:15:15 CDT)
• question on resname
  • Ioana Cozmuta (Tue Jul 22 2003 - 21:17:10 CDT)
  • Justin Gullingsrud (Tue Jul 22 2003 - 21:13:50 CDT)
  • Ioana Cozmuta (Tue Jul 22 2003 - 21:03:56 CDT)
  • John Stone (Tue Jun 24 2003 - 10:31:10 CDT)
  • Ioana Cozmuta (Mon Jun 23 2003 - 16:16:02 CDT)
• question on spin density
  • Axel Kohlmeyer (Wed Jan 24 2007 - 17:14:53 CST)
  • Robert fiske (Wed Jan 24 2007 - 14:00:32 CST)
• question on vmd installation
  • Shen (Wed Apr 05 2006 - 03:51:30 CDT)
  • John Stone (Tue Apr 04 2006 - 14:43:58 CDT)
  • Shen (Tue Apr 04 2006 - 05:57:12 CDT)
  • John Stone (Mon Apr 03 2006 - 11:18:45 CDT)
  • Shen (Mon Apr 03 2006 - 13:27:38 CDT)
• Question regarding color schemes on crystals and grain boundaries
  • Axel Kohlmeyer (Sat Aug 31 2013 - 06:37:12 CDT)
  • Roger A Larson (Fri Aug 30 2013 - 16:13:13 CDT)
• Question regarding dihedral fitting using fftk
  • Erik (Fri Nov 30 2012 - 12:24:42 CST)
  • Mayne, Christopher G (Fri Nov 30 2012 - 09:15:08 CST)
  • ehsan zahedinejad (Fri Nov 30 2012 - 00:23:42 CST)
• Question regarding FEP parameters
  • snoze pa (Wed Aug 29 2012 - 13:05:15 CDT)
• Question regarding g(r) utility
  • Axel Kohlmeyer (Wed Jan 26 2011 - 18:35:47 CST)
  • Narayanan Veeraraghavan (Wed Jan 26 2011 - 17:30:33 CST)
• question regarding H-bond calculation
  • Axel Kohlmeyer (Sun May 01 2011 - 11:32:09 CDT)
  • JC Gumbart (Sun May 01 2011 - 11:29:18 CDT)
  • juzer stationwala (Sun May 01 2011 - 10:31:55 CDT)
• Question regarding HBond analysis
  • Axel Kohlmeyer (Tue Jan 17 2012 - 13:19:21 CST)
  • Axel Kohlmeyer (Mon Jan 16 2012 - 18:13:55 CST)
  • Ganesh Kamath (Mon Jan 16 2012 - 17:05:19 CST)
• Question Regarding PME Set-up
  • John Stone (Mon May 03 2010 - 15:08:32 CDT)
  • Stefan Franzen (Sun May 02 2010 - 16:48:20 CDT)
• Question regarding selection of atoms
  • JeJoon Yeon (Wed Jul 29 2015 - 09:21:41 CDT)
• Question Regarding User-Defined Trajectories
  • John Stone (Mon Mar 08 2010 - 09:37:25 CST)
  • Wallace Dumars (Fri Mar 05 2010 - 15:53:01 CST)
• Question regarding VMD In-situ Remote Visualization on clusters
  • Feng Chen (Mon Feb 05 2018 - 11:28:41 CST)
• Question related to circular membrane
  • John Stone (Fri Aug 16 2013 - 10:58:56 CDT)
  • snoze pa (Thu Aug 15 2013 - 16:26:28 CDT)
• question related to rmsd
  • snoze pa (Mon May 05 2008 - 15:03:07 CDT)
• Question2 about introducing variables in "mol selection..."
  • Axel Kohlmeyer (Fri May 22 2009 - 16:10:24 CDT)
  • Alberto Sergio Garay (Fri May 22 2009 - 15:31:51 CDT)
• Question3 about introducing variables in "mol selection..."
  • Axel Kohlmeyer (Fri May 22 2009 - 17:09:08 CDT)
  • Alberto Sergio Garay (Fri May 22 2009 - 16:47:25 CDT)
• Question: Cannot input hostname (LINUXAMD64.opengl)
  • Hideki Hatanaka (Fri Jan 27 2006 - 10:42:52 CST)
  • John Stone (Thu Jan 26 2006 - 14:24:30 CST)
• Question: Too many arguments
  • Axel Kohlmeyer (Mon Jun 16 2008 - 09:45:36 CDT)
  • Leonhard Henkes (Mon Jun 16 2008 - 08:24:15 CDT)
• Question: VMD sasa calculation of the hydrophobic surface area on segname P2
  • Tran, Tran (Thu Jul 07 2016 - 23:46:37 CDT)
• questions
  • John Stone (Wed Oct 21 2009 - 16:50:06 CDT)
  • Axel Kohlmeyer (Wed Oct 21 2009 - 13:03:57 CDT)
  • Umesh Ghoshdastider (Wed Oct 21 2009 - 11:56:24 CDT)
• Questions - Running vmd on a supercomputer
  • emerson p l (Mon Feb 14 2022 - 12:50:13 CST)
  • Giacomo Fiorin (Mon Feb 14 2022 - 08:52:14 CST)
  • emerson p l (Mon Feb 14 2022 - 08:01:02 CST)
• questions about "new" posssible features
  • Daniel Möller (Mon Feb 02 2015 - 05:29:17 CST)
• questions about developing a plugin
  • Leandro Martínez (Thu May 24 2007 - 10:02:01 CDT)
  • Axel Kohlmeyer (Thu May 24 2007 - 08:19:04 CDT)
  • Axel Kohlmeyer (Thu May 24 2007 - 08:02:33 CDT)
  • Yinglong Miao (Wed May 23 2007 - 22:20:39 CDT)
  • Peter Freddolino (Wed May 23 2007 - 19:18:48 CDT)
  • Axel Kohlmeyer (Wed May 23 2007 - 16:19:17 CDT)
  • Yinglong Miao (Wed May 23 2007 - 15:21:11 CDT)
• questions about MSMS and H-bonds
  • Andrew Dalke (Fri Mar 05 1999 - 15:04:39 CST)
  • Andrew Dalke (Fri Mar 05 1999 - 14:54:07 CST)
  • Axel Berg (Fri Mar 05 1999 - 06:38:48 CST)
• Questions about outputting an image with specified atom colors
  • John Stone (Tue Jun 09 2015 - 16:19:29 CDT)
  • Xiaohui She (Tue Jun 02 2015 - 09:34:19 CDT)
• questions about RBCG
  • ½¹±ª (Fri Jun 03 2011 - 21:27:17 CDT)
• questions about the electron density map
  • John Stone (Fri Apr 03 2009 - 08:00:39 CDT)
  • YI Zhang (Fri Apr 03 2009 - 05:38:54 CDT)
• Questions about the optimization of a molecule with fftk
  • Mayne, Christopher G (Fri Jul 24 2015 - 09:34:38 CDT)
  • ABEL Stephane 175950 (Fri Jul 24 2015 - 08:31:54 CDT)
• Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field
  • Axel Kohlmeyer (Fri Apr 29 2011 - 08:36:01 CDT)
  • DreamCatcher (Fri Apr 29 2011 - 07:48:18 CDT)
• Questions about using VMD to modify/alter nucleic acid structures
  • Ashar Malik (Mon Sep 14 2020 - 03:48:25 CDT)
  • CHIRANJEEV BURMA (Sun Sep 13 2020 - 12:01:20 CDT)
• Questions abt VMD plugins
  • Axel Kohlmeyer (Fri Sep 14 2007 - 10:06:06 CDT)
  • Audrey Salazar (Fri Sep 14 2007 - 08:59:48 CDT)
• Questions and Bugs
  • McGuire, Kelly (Thu Apr 25 2019 - 10:22:33 CDT)
• questions for 1.8.4
  • John Stone (Tue Apr 25 2006 - 10:49:28 CDT)
  • Nathan C. Rockwell (Fri Apr 21 2006 - 15:08:00 CDT)
  • John Stone (Fri Apr 21 2006 - 14:52:32 CDT)
  • Nathan C. Rockwell (Fri Apr 21 2006 - 14:32:16 CDT)
• questions for trajectory analysis
  • PaweÅ‚ KÄ™dzierski (Thu May 31 2012 - 03:07:51 CDT)
  • Jim Kress (Wed May 30 2012 - 20:01:18 CDT)
  • Andrew Jewett (Wed May 30 2012 - 15:41:25 CDT)
  • oguz gurbulak (Wed May 30 2012 - 01:44:59 CDT)
• Questions on VMD
  • Kramer Campen (Thu May 17 2007 - 17:45:28 CDT)
  • Axel Kohlmeyer (Thu May 17 2007 - 16:32:05 CDT)
  • Mark Zottola (Thu May 17 2007 - 16:44:10 CDT)
• Questions regarding fftk and Gaussian
  • Evandro Semighini (Mon Jul 06 2015 - 09:16:38 CDT)
  • Bennion, Brian (Fri Jun 26 2015 - 20:32:01 CDT)
  • Evandro Semighini (Thu Jun 25 2015 - 14:28:21 CDT)
  • Mayne, Christopher G (Tue May 19 2015 - 15:07:21 CDT)
  • Evandro Semighini (Tue May 19 2015 - 15:19:40 CDT)
  • Evandro Semighini (Tue May 19 2015 - 12:45:53 CDT)
  • Bennion, Brian (Tue May 19 2015 - 10:51:51 CDT)
  • Evandro Semighini (Tue May 19 2015 - 08:06:47 CDT)
• questions relating to VolMapTool
  • Axel Kohlmeyer (Wed Jul 23 2008 - 06:30:55 CDT)
  • bo liu (Wed Jul 23 2008 - 02:35:18 CDT)
• Questions with Solvation with TIP4P Water Model
  • Brian Radak (Thu Apr 02 2015 - 14:21:15 CDT)
  • John Stone (Thu Apr 02 2015 - 11:15:28 CDT)
  • Kin Leung CHU (Thu Apr 02 2015 - 01:58:01 CDT)
• quick help
  • John Stone (Wed Oct 02 2002 - 00:54:33 CDT)
  • jmp17_at_duke.edu (Wed Oct 02 2002 - 00:48:31 CDT)
• Quick question about 3-letter codes for positive residues
  • Justin Gullingsrud (Wed Feb 19 2003 - 09:16:52 CST)
  • Paul Darwen (Wed Feb 19 2003 - 01:58:36 CST)
• Quick Surf Representation Getting Cutoff when Rendering with Tachyon
  • John Stone (Tue May 29 2012 - 16:08:16 CDT)
  • Robert Johnson (Tue May 29 2012 - 16:11:59 CDT)
  • Robert Johnson (Tue May 29 2012 - 14:11:52 CDT)
• quick tcl question with vmd/psfgen
  • Brian Radak (Thu Jan 29 2015 - 14:04:08 CST)
  • Josh Vermaas (Thu Jan 29 2015 - 13:42:33 CST)
  • Axel Kohlmeyer (Thu Jan 29 2015 - 13:56:45 CST)
  • Brian Radak (Thu Jan 29 2015 - 13:49:00 CST)
  • Axel Kohlmeyer (Thu Jan 29 2015 - 13:33:20 CST)
  • JC Gumbart (Thu Jan 29 2015 - 13:06:04 CST)
  • Brian Radak (Thu Jan 29 2015 - 12:30:47 CST)
• Quick TCl scripting question
  • Anthony Rey (Thu Sep 22 2011 - 00:02:54 CDT)
  • Tim Travers (Wed Sep 21 2011 - 23:57:14 CDT)
  • Anthony Rey (Wed Sep 21 2011 - 22:49:02 CDT)
• Quick wrapping
  • Jérôme Hénin (Thu Apr 04 2013 - 08:31:49 CDT)
  • Thomas C. Bishop (Thu Apr 04 2013 - 07:37:44 CDT)
  • John Stone (Wed Apr 03 2013 - 16:02:29 CDT)
  • Jérôme Hénin (Tue Apr 02 2013 - 10:05:11 CDT)
• quick-surf and throb
  • John Stone (Thu Feb 16 2012 - 09:40:44 CST)
  • Philippe Bopp / temporary (Thu Feb 16 2012 - 03:55:32 CST)
• quicksurf and PBC
  • John Stone (Sat Feb 18 2012 - 11:14:25 CST)
  • Axel Kohlmeyer (Sat Feb 18 2012 - 10:57:01 CST)
  • Philippe Bopp / temporary (Sat Feb 18 2012 - 09:45:48 CST)
• Quicksurf crashes VMD on newest Mac version
  • FX (Mon May 10 2021 - 16:05:59 CDT)
  • John Stone (Mon May 10 2021 - 15:39:22 CDT)
  • David Kastner (Mon May 10 2021 - 14:58:23 CDT)
  • FX (Mon May 10 2021 - 14:50:46 CDT)
  • John Stone (Mon May 10 2021 - 11:27:26 CDT)
  • David Kastner (Thu May 06 2021 - 23:29:03 CDT)
• quicktime/mpeg movies
  • John Stone (Fri Jun 20 2003 - 14:59:37 CDT)
  • Bogdan Costescu (Fri Jun 20 2003 - 14:30:24 CDT)
  • John Stone (Wed Jun 18 2003 - 11:21:53 CDT)
  • Peter Tieleman (Wed Jun 18 2003 - 10:51:56 CDT)
• Quikmd hangs on new install of vmd 1.9.4 on BigSur
  • John Stone (Tue Oct 19 2021 - 16:55:04 CDT)
  • Mike McCallum (Tue Oct 19 2021 - 16:33:31 CDT)
  • John Stone (Tue Oct 19 2021 - 15:08:54 CDT)
  • John Stone (Mon Oct 18 2021 - 12:20:17 CDT)
  • Carolyn Fitch (Sun Oct 03 2021 - 08:02:20 CDT)
  • Carolyn Fitch (Sat Oct 02 2021 - 07:57:21 CDT)
• Quite confused with Movie Maker
  • John Stone (Thu Dec 08 2005 - 18:17:02 CST)
  • Yinghong (Fri Nov 25 2005 - 18:30:09 CST)
• quitting VMD
  • John Stone (Thu Sep 23 2004 - 13:22:48 CDT)
  • mdcooper (Thu Sep 23 2004 - 12:55:09 CDT)
• Qurry Regarding Vizualization of two data sets
  • John Stone (Thu Dec 31 2020 - 11:53:09 CST)
  • Rafael Bernardi (Mon Dec 21 2020 - 12:16:45 CST)
  • Shubham Agarwal (Mon Dec 21 2020 - 09:58:35 CST)
  • John Stone (Thu Dec 17 2020 - 09:51:04 CST)
  • Shubham Agarwal (Thu Dec 17 2020 - 04:38:15 CST)
• Qurry Regarding Vizualization og two data sets
  • Shubham Agarwal (Tue Dec 15 2020 - 09:05:05 CST)
• QwikMD - psfgen: patch and autogenerate
  • João Ribeiro (Fri May 04 2018 - 17:09:55 CDT)
  • Rose, Stuart Wallace (Thu May 03 2018 - 11:50:07 CDT)
• QwikMD - Steered Molecular Dynamics Query
  • Jeevan Patra (Mon Jul 31 2023 - 12:49:20 CDT)
  • Sinclair, Matt (Sun Jul 30 2023 - 13:03:28 CDT)
  • Jeevan Patra (Sun Jul 30 2023 - 09:18:11 CDT)
• QwikMD Add Topo+Param Question
  • João Ribeiro (Mon May 21 2018 - 09:57:49 CDT)
  • McGuire, Kelly (Thu May 17 2018 - 12:40:08 CDT)
• QwikMD and CUDA10
  • jrhau lung (Fri Feb 01 2019 - 17:33:45 CST)
  • João Ribeiro (Fri Feb 01 2019 - 08:59:31 CST)
  • jrhau lung (Thu Jan 31 2019 - 17:58:24 CST)
  • John Stone (Thu Jan 31 2019 - 09:21:04 CST)
  • João Ribeiro (Thu Jan 31 2019 - 09:04:40 CST)
  • jrhau lung (Thu Jan 31 2019 - 05:43:53 CST)
• QwikMD and platform choice
  • João Ribeiro KS (Thu Sep 29 2016 - 10:44:23 CDT)
  • James Kress (Thu Sep 29 2016 - 10:30:53 CDT)
• qwikmd can't load pdb file, locate "P:/" drive
  • João Ribeiro (Tue Mar 05 2019 - 09:21:08 CST)
  • Brittany Lott (Mon Mar 04 2019 - 20:24:54 CST)
• QwikMD error
  • John Stone (Fri Jul 02 2021 - 11:34:11 CDT)
  • Giuseppe Ermondi (Fri May 21 2021 - 07:47:45 CDT)
• QwikMD Error in VMD 1.9.4a53 on Windows 10 Computer
  • Efthymiou, Christos (Mon Oct 10 2022 - 12:04:46 CDT)
• Qwikmd for QMMM simulations
  • Joao Ribeiro (Thu Mar 12 2020 - 15:33:17 CDT)
  • jing liang (Mon Mar 09 2020 - 10:37:34 CDT)
• QwikMD Glycoside Hydrolase Tutorial step 2
  • Joao Ribeiro (Fri Apr 26 2019 - 08:57:56 CDT)
  • Andreas Kukol (Fri Apr 26 2019 - 04:30:30 CDT)
  • Joao Ribeiro (Thu Apr 25 2019 - 13:31:40 CDT)
  • Andreas Kukol (Thu Apr 25 2019 - 10:35:16 CDT)
• QwikMD premature exit
  • John Stone (Thu Dec 31 2020 - 14:25:47 CST)
  • John Keller (Wed Oct 07 2020 - 18:49:51 CDT)
  • John Keller (Wed Oct 07 2020 - 16:30:11 CDT)
• QwikMD problem to continue new production simulation session
  • jrhau lung (Mon Jul 06 2020 - 18:33:57 CDT)
• QwikMD QM Tut - FATAL ERROR: Error running command for QM forces calculation
  • hgkrug1_at_gmail.com (Mon Sep 12 2022 - 08:38:15 CDT)
  • hgkrug1_at_gmail.com (Fri Sep 09 2022 - 03:46:55 CDT)
  • hgkrug1_at_gmail.com (Fri Sep 09 2022 - 02:31:37 CDT)
  • hgkrug1_at_gmail.com (Tue Sep 06 2022 - 10:30:58 CDT)
• QwikMD Restraints Question
  • McGuire, Kelly (Wed Jun 20 2018 - 18:07:50 CDT)
  • João Ribeiro (Wed Jun 20 2018 - 17:56:49 CDT)
  • McGuire, Kelly (Wed Jun 20 2018 - 17:37:28 CDT)
• qwikmd, some dropdown menus missing
  • João Ribeiro KS (Tue Nov 29 2016 - 08:24:48 CST)
  • Stefan Boresch (Tue Nov 29 2016 - 03:10:35 CST)
  • Stefan Boresch (Tue Nov 29 2016 - 02:20:31 CST)
  • João Ribeiro KS (Mon Nov 28 2016 - 07:40:33 CST)
  • Stefan Boresch (Mon Nov 28 2016 - 06:31:30 CST)
  • Stefan Boresch (Mon Nov 28 2016 - 04:35:31 CST)
• QwikMD/IMD Error connecting to localhost on port 3000
  • John Stone (Tue Jun 28 2016 - 09:55:55 CDT)
  • João Ribeiro KS (Tue Jun 28 2016 - 08:51:15 CDT)
  • Kevin C Chan (Tue Jun 28 2016 - 08:24:19 CDT)
• Qwrap Beta Issue
  • Jérôme Hénin (Mon Apr 08 2013 - 05:45:35 CDT)
• qwrap installation
  • Alexander Adams (Wed Apr 29 2020 - 14:30:31 CDT)
  • Giacomo Fiorin (Tue Apr 28 2020 - 15:20:04 CDT)
  • Ashar Malik (Tue Apr 28 2020 - 15:03:51 CDT)
  • Ivan Gregoretti (Tue Apr 28 2020 - 14:09:42 CDT)
  • Alexander Adams (Tue Apr 28 2020 - 12:36:40 CDT)
• R.E.D.-III.3 tools release - q4md-forcefieldtools.org
  • FyD (Sun Oct 04 2009 - 09:37:06 CDT)
• R/S asymmetric carbon
  • FyD (Fri Dec 01 2006 - 04:02:39 CST)
• R: Distance between center of mass of two amino acid residues.
  • Cosseddu, Salvatore (Sun Feb 19 2012 - 13:50:37 CST)
• R: I: vmd on windows
  • John Stone (Tue Jan 03 2012 - 10:06:38 CST)
  • Sergio Decherchi (Tue Jan 03 2012 - 05:42:56 CST)
• R: MM-PBSA calculation
  • Hannes Loeffler (Fri Nov 08 2013 - 03:27:34 CST)
  • Spitaleri Andrea (Fri Nov 08 2013 - 01:09:33 CST)
• R: R: MM-PBSA calculation
  • Spitaleri Andrea (Fri Nov 08 2013 - 04:50:40 CST)
• Radeon FireGL drivers crash VMD
  • John Stone (Fri Oct 31 2003 - 09:47:36 CST)
  • John Stone (Fri Oct 31 2003 - 09:41:48 CST)
  • Jérôme Hénin (Fri Oct 31 2003 - 04:38:39 CST)
  • Lucas Watkins (Thu Oct 30 2003 - 06:53:47 CST)
• radial atom distribution
  • faride badalkhani (Mon Jan 27 2020 - 14:20:37 CST)
  • James Kress (Mon Jan 27 2020 - 10:36:52 CST)
  • faride badalkhani (Mon Jan 27 2020 - 06:12:50 CST)
• Radial Density
  • Jennifer Williams (Wed Mar 19 2008 - 11:12:56 CDT)
  • Axel Kohlmeyer (Wed Mar 19 2008 - 11:48:49 CDT)
  • Axel Kohlmeyer (Thu Aug 09 2007 - 09:23:39 CDT)
  • Olaf Lenz (Thu Aug 09 2007 - 10:19:22 CDT)
  • Christopher Stiles (Thu Aug 09 2007 - 09:11:55 CDT)
• radial density over one frame
  • Axel Kohlmeyer (Sun Mar 09 2008 - 15:49:17 CDT)
  • Christopher Stiles (Sun Mar 09 2008 - 14:55:51 CDT)
• radial distribution
  • Peter Freddolino (Fri Mar 10 2006 - 10:52:38 CST)
  • L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 08:10:56 CST)
• radial distribution function
  • Axel Kohlmeyer (Thu Feb 09 2012 - 21:09:54 CST)
  • Paymon Pirzadeh (Thu Feb 09 2012 - 20:15:15 CST)
  • Axel Kohlmeyer (Sat Sep 03 2011 - 16:25:05 CDT)
  • Kartheek (Sat Sep 03 2011 - 12:49:00 CDT)
  • Axel Kohlmeyer (Sat Sep 03 2011 - 11:20:33 CDT)
  • Kartheek (Sat Sep 03 2011 - 10:10:03 CDT)
  • Kartheek (Sat Sep 03 2011 - 07:18:46 CDT)
  • Kartheek (Sat Sep 03 2011 - 06:32:58 CDT)
  • Kartheek (Sat Sep 03 2011 - 05:33:50 CDT)
• radial distribution function and number integrals
  • Giovanni Bellesia (Wed Mar 05 2008 - 21:26:22 CST)
  • Axel Kohlmeyer (Wed Mar 05 2008 - 21:54:46 CST)
  • Axel Kohlmeyer (Wed Mar 05 2008 - 16:34:14 CST)
  • Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
  • Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
  • Giovanni Bellesia (Wed Mar 05 2008 - 11:45:31 CST)
• Radial distribution function calculation
  • Rameswar Bhattacharjee (Thu Jun 11 2020 - 00:35:06 CDT)
  • Axel Kohlmeyer (Wed Jun 10 2020 - 23:59:10 CDT)
  • Rameswar Bhattacharjee (Wed Jun 10 2020 - 23:01:30 CDT)
• Radial distribution function from center of mass
  • Sadegh Faramarzi Ganjabad (Tue Mar 22 2016 - 11:35:24 CDT)
• radial distribution function from the center of mass
  • Axel Kohlmeyer (Thu Nov 18 2010 - 20:27:55 CST)
  • Axel Kohlmeyer (Thu Nov 18 2010 - 20:20:18 CST)
  • David Wedner (Thu Nov 18 2010 - 19:41:56 CST)
• Radial distribution function in VMD
  • Chirag Vora (Tue Nov 22 2011 - 12:01:52 CST)
• radial distribution function problem
  • Axel Kohlmeyer (Wed May 26 2010 - 11:26:30 CDT)
  • Hyun Tae Jung (Wed May 26 2010 - 08:42:48 CDT)
• Radial distribution function script (fwd)
  • John Stone (Thu Feb 07 2002 - 21:29:50 CST)
• Radial distribution function: "y" axis
  • martin klvana (Mon May 17 2010 - 17:05:03 CDT)
  • Axel Kohlmeyer (Mon May 17 2010 - 17:13:23 CDT)
  • Axel Kohlmeyer (Sun May 16 2010 - 14:01:26 CDT)
  • martin klvana (Sun May 16 2010 - 12:39:54 CDT)
• radial distribution funtion
  • Axel Kohlmeyer (Mon Feb 13 2012 - 21:59:32 CST)
  • Paymon Pirzadeh (Mon Feb 13 2012 - 21:43:54 CST)
  • Axel Kohlmeyer (Mon Feb 13 2012 - 16:21:16 CST)
  • Paymon Pirzadeh (Mon Feb 13 2012 - 15:21:25 CST)
• radial pair distribution function
  • Adam Goler (Wed Mar 12 2014 - 13:02:04 CDT)
  • Axel Kohlmeyer (Wed Mar 12 2014 - 00:35:52 CDT)
  • Adam Goler (Tue Mar 11 2014 - 23:55:56 CDT)
  • Josh Vermaas (Tue Mar 11 2014 - 22:00:13 CDT)
  • Adam Goler (Tue Mar 11 2014 - 20:03:55 CDT)
  • Axel Kohlmeyer (Fri Mar 01 2013 - 09:39:35 CST)
  • Josh Vermaas (Fri Mar 01 2013 - 09:49:31 CST)
  • John Stone (Fri Mar 01 2013 - 09:25:13 CST)
  • Bharath K. Srikanth (Fri Mar 01 2013 - 03:05:58 CST)
• radial pair distribution function: molecule/water?
  • Axel Kohlmeyer (Mon Sep 04 2006 - 12:14:28 CDT)
  • Ivan Degtyarenko (Mon Sep 04 2006 - 11:31:35 CDT)
• radial pair distribution problems
  • John Stone (Wed Sep 21 2011 - 11:22:33 CDT)
  • aiswarya pawar (Wed Sep 21 2011 - 01:27:50 CDT)
• radius of gyration
  • Ajasja LjubetiÄ� (Wed Nov 02 2011 - 16:14:59 CDT)
  • ban arn (Wed Nov 02 2011 - 16:02:45 CDT)
  • Axel Kohlmeyer (Wed Nov 02 2011 - 15:49:19 CDT)
  • ban arn (Wed Nov 02 2011 - 14:41:09 CDT)
  • John Stone (Tue May 10 2005 - 10:16:01 CDT)
  • Cetin Baloglu (Tue May 10 2005 - 09:47:59 CDT)
• radius of gyration autocorrelation function
  • Ajasja LjubetiÄ� (Tue Jun 07 2016 - 17:08:46 CDT)
  • faride badalkhani (Tue Jun 07 2016 - 15:40:10 CDT)
  • faride badalkhani (Thu Jun 02 2016 - 14:23:28 CDT)
• Radius of gyration from Big DCD
  • Axel Kohlmeyer (Fri Sep 28 2012 - 10:50:36 CDT)
  • flavio seixas (Fri Sep 28 2012 - 09:58:31 CDT)
  • Bjørnar Jensen (Fri Sep 28 2012 - 08:39:04 CDT)
  • flavio seixas (Fri Sep 28 2012 - 08:07:27 CDT)
  • Bjørnar Jensen (Fri Sep 28 2012 - 05:35:53 CDT)
  • flavio seixas (Thu Sep 27 2012 - 14:08:31 CDT)
• radius of gyration units
  • John Stone (Tue Nov 03 2009 - 16:32:20 CST)
  • Roman Petrenko (Tue Nov 03 2009 - 16:18:24 CST)
  • John Stone (Tue Nov 03 2009 - 16:13:10 CST)
  • Roman Petrenko (Tue Nov 03 2009 - 15:59:54 CST)
  • Leonardo Trabuco (Tue Nov 03 2009 - 15:13:19 CST)
  • Bernardo Sosa Padilla Araujo (Tue Nov 03 2009 - 15:08:36 CST)
• radius of the curvature
  • Axel Kohlmeyer (Wed Nov 29 2006 - 12:31:59 CST)
  • Samuel C Flores (Wed Nov 29 2006 - 12:16:50 CST)
  • Axel Kohlmeyer (Tue Nov 28 2006 - 16:08:29 CST)
  • ivana adamovic (Tue Nov 28 2006 - 14:33:01 CST)
• Rainbow color scheme for VolumeSlice / Volume
  • John Stone (Tue Dec 04 2007 - 18:03:05 CST)
  • Xavier Cartoixa Soler (Tue Dec 04 2007 - 05:41:36 CST)
• Rama plot
  • Ekta Khurana (Tue May 10 2005 - 11:31:27 CDT)
  • Axel Kohlmeyer (Tue May 10 2005 - 01:53:57 CDT)
  • Ekta Khurana (Mon May 09 2005 - 18:34:48 CDT)
  • Michel Espinoza-Fonseca (Mon May 09 2005 - 18:27:12 CDT)
  • Ekta Khurana (Mon May 09 2005 - 18:07:40 CDT)
  • John Stone (Mon Feb 23 2004 - 10:58:56 CST)
  • Ioana Cozmuta (Fri Feb 20 2004 - 19:48:17 CST)
• Ramachandran Dihedral Angles Suspiciously Constant
  • Michael Robinson (Mon Sep 26 2022 - 08:53:11 CDT)
  • Vermaas, Josh (Mon Sep 26 2022 - 08:30:26 CDT)
  • Michael Robinson (Sun Sep 25 2022 - 23:58:49 CDT)
  • Amanda Jenkins (Sun Sep 25 2022 - 21:35:55 CDT)
  • Vermaas, Josh (Sun Sep 25 2022 - 13:29:05 CDT)
  • Amanda Jenkins (Sat Sep 24 2022 - 21:22:13 CDT)
  • Amanda Jenkins (Sat Sep 24 2022 - 17:20:27 CDT)
  • Vermaas, Josh (Sat Sep 24 2022 - 12:28:36 CDT)
  • Amanda Jenkins (Fri Sep 23 2022 - 21:19:26 CDT)
  • Josh Vermaas (Fri Sep 23 2022 - 15:36:58 CDT)
  • Josh Vermaas (Fri Sep 23 2022 - 07:54:53 CDT)
  • Amanda Jenkins (Fri Sep 23 2022 - 05:14:30 CDT)
• Ramachandran Map of 2 pdbs
  • Justin Gullingsrud (Fri Sep 08 2006 - 14:50:35 CDT)
  • John Stone (Fri Sep 08 2006 - 13:13:23 CDT)
  • Rathinavelan, Thenmalarchelvi (Fri Sep 08 2006 - 12:43:32 CDT)
• ramachandran plot
  • John Stone (Wed Nov 06 2013 - 10:37:51 CST)
  • Marzieh Dehghan (Wed Nov 06 2013 - 09:31:15 CST)
  • Charles McCallum (Tue May 10 2005 - 22:56:14 CDT)
  • Ekta Khurana (Mon May 09 2005 - 18:00:46 CDT)
• Ramachandran plot question
  • John Stone (Mon Nov 18 2013 - 12:05:30 CST)
  • Thomas Albers (Mon Nov 18 2013 - 11:47:07 CST)
• Ramachandran plot tcl script
  • Axel Kohlmeyer (Sat Feb 23 2008 - 17:17:38 CST)
  • Anthony Samiotakis (Sat Feb 23 2008 - 15:54:50 CST)
• ramaplot
  • Axel Kohlmeyer (Fri Mar 14 2008 - 09:37:41 CDT)
  • ramya narasimhan (Fri Mar 14 2008 - 00:46:30 CDT)
• Random deletions of molecules
  • John Stone (Thu Dec 31 2020 - 10:49:49 CST)
  • Daniel Fellner (Wed Dec 30 2020 - 19:20:08 CST)
  • Tiglath Moradkhan (Wed Dec 30 2020 - 16:22:15 CST)
• random graphics outages on startup
  • Oliver Beckstein (Thu Feb 05 2004 - 12:23:42 CST)
  • John Stone (Wed Feb 04 2004 - 10:42:19 CST)
  • Bogdan Costescu (Wed Feb 04 2004 - 10:47:59 CST)
  • Oliver Beckstein (Wed Feb 04 2004 - 08:06:33 CST)
• Random placement of molecules within a defined region
  • John Stone (Wed May 11 2016 - 23:24:05 CDT)
  • Sourav Ray (Sat May 07 2016 - 11:11:17 CDT)
• Random Sudden Increase in RMSD Near End of Simulation
  • Efthymiou, Christos (Mon May 01 2023 - 13:39:12 CDT)
  • Josh Vermaas (Mon May 01 2023 - 12:02:21 CDT)
  • Efthymiou, Christos (Mon May 01 2023 - 11:43:33 CDT)
  • Vermaas, Josh (Fri Apr 28 2023 - 04:20:23 CDT)
  • Efthymiou, Christos (Fri Apr 28 2023 - 01:58:28 CDT)
• Randomly select molecules and delete them
  • fan li (Tue Jul 06 2021 - 15:06:26 CDT)
  • Jason Smith (Tue Jul 06 2021 - 10:28:03 CDT)
  • fan li (Tue Jul 06 2021 - 05:23:48 CDT)
• Rapid and accurate parameterization of new molecules in CHARMM
  • Mayne, Christopher G (Wed May 28 2014 - 08:17:56 CDT)
• rasmol script
  • Andrew Dalke (Tue Mar 20 2001 - 22:45:49 CST)
  • Yunfeng Hu (Tue Mar 20 2001 - 19:36:24 CST)
• raster3d
  • John Stone (Thu Aug 02 2001 - 19:13:49 CDT)
  • Yunfeng Hu (Thu Aug 02 2001 - 19:11:28 CDT)
• Rasterized default display rendering vs ray-tracing (interactive)
  • John Stone (Wed Apr 17 2019 - 08:41:53 CDT)
  • Bart Bruininks (Wed Apr 17 2019 - 06:02:46 CDT)
• Raytracing with tachyon/povray because of pb with raster3d
  • John Stone (Tue Nov 26 2002 - 13:34:38 CST)
  • John Stone (Tue Nov 26 2002 - 13:11:26 CST)
  • Bogdan Costescu (Tue Nov 26 2002 - 12:58:40 CST)
  • Marc Baaden (Tue Nov 26 2002 - 12:02:51 CST)
  • Bogdan Costescu (Tue Nov 26 2002 - 11:41:38 CST)
  • John Stone (Tue Nov 26 2002 - 11:17:33 CST)
  • Marc Baaden (Tue Nov 26 2002 - 10:47:22 CST)
• RBCG bead diameter
  • Axel Kohlmeyer (Sat Oct 31 2009 - 14:42:05 CDT)
  • Christine Horejs (Wed Oct 28 2009 - 11:54:50 CDT)
• RBCG Builder
  • Fotis Baltoumas (Tue Sep 25 2018 - 02:01:04 CDT)
  • Peter Freddolino (Mon Sep 24 2018 - 21:59:09 CDT)
  • Fotis Baltoumas (Mon Sep 24 2018 - 14:37:34 CDT)
  • Lewis, Kimberly A (Mon Sep 24 2018 - 13:27:06 CDT)
• RBCG Model
  • Katherine Parra (Tue Oct 27 2009 - 09:19:55 CDT)
• RBCG models using Martini forces - psf file
  • Peter Freddolino (Mon Jul 13 2020 - 11:35:03 CDT)
  • Alilovic,Kata (Mon Jul 13 2020 - 09:13:19 CDT)
• RDF
  • Philippe Bopp / temporary (Mon Dec 03 2012 - 06:56:54 CST)
  • Axel Kohlmeyer (Fri Nov 30 2012 - 13:34:45 CST)
  • Ramin Ekhteiari (Fri Nov 30 2012 - 12:34:13 CST)
• RDF analysis using GROMACS trajectory
  • John Stone (Tue Aug 15 2017 - 12:18:20 CDT)
  • faride badalkhani (Mon Aug 07 2017 - 08:02:05 CDT)
• RDF and Coordination Number
  • Axel Kohlmeyer (Fri May 28 2010 - 08:52:10 CDT)
  • Amir Hajiahmadi Farmahini (Fri May 28 2010 - 05:40:15 CDT)
• RDF and RMSD calculation
  • Axel Kohlmeyer (Tue Apr 11 2017 - 09:54:28 CDT)
  • Jeams Anderson (Tue Apr 11 2017 - 04:06:48 CDT)
• RDF calculation
  • Axel Kohlmeyer (Mon Jan 13 2014 - 19:43:21 CST)
  • . Juita (Mon Jan 13 2014 - 18:27:09 CST)
  • Ramya Gamini (Mon Oct 25 2010 - 11:44:58 CDT)
  • sarah k (Mon Oct 25 2010 - 10:21:40 CDT)
• RDF calculation for production steps
  • Dudo (Thu Sep 15 2011 - 15:23:15 CDT)
  • Axel Kohlmeyer (Thu Sep 15 2011 - 10:38:16 CDT)
  • Goldsmith, Jacob (Thu Sep 15 2011 - 08:25:20 CDT)
  • Axel Kohlmeyer (Tue Sep 13 2011 - 23:51:17 CDT)
  • siladitya mukherjee (Tue Sep 13 2011 - 15:15:53 CDT)
• RDF calculations
  • Axel Kohlmeyer (Fri Jul 13 2007 - 17:38:35 CDT)
  • Fred Moore (Fri Jul 13 2007 - 15:16:40 CDT)
• RDF COM
  • Sam Wallace (Tue Aug 28 2012 - 01:35:19 CDT)
  • Axel Kohlmeyer (Thu Aug 23 2012 - 02:47:02 CDT)
  • Bhanita Sharma (Thu Aug 23 2012 - 00:28:56 CDT)
• rdf curve
  • Axel Kohlmeyer (Tue Dec 22 2009 - 09:08:20 CST)
  • gurunath katagi (Tue Dec 22 2009 - 08:17:57 CST)
• rdf for big systems
  • Valeria Molinero (Tue Aug 12 2008 - 18:35:42 CDT)
  • Axel Kohlmeyer (Mon Aug 11 2008 - 13:35:11 CDT)
  • John Stone (Mon Aug 11 2008 - 11:45:07 CDT)
  • Valeria Molinero (Mon Aug 11 2008 - 11:40:45 CDT)
  • John Stone (Wed Aug 06 2008 - 11:24:27 CDT)
  • John Stone (Thu Jul 31 2008 - 13:00:35 CDT)
  • Valeria Molinero (Tue Jul 22 2008 - 18:58:25 CDT)
  • Axel Kohlmeyer (Tue Jul 22 2008 - 19:09:09 CDT)
  • Axel Kohlmeyer (Tue Jul 22 2008 - 17:06:30 CDT)
  • Valeria Molinero (Tue Jul 22 2008 - 16:23:04 CDT)
• rdf for specific group of atoms
  • Axel Kohlmeyer (Wed Jun 15 2011 - 09:14:46 CDT)
  • Rupashree Shyama Ray (Wed Jun 15 2011 - 08:29:29 CDT)
• Rdf from a specific point
  • Robert Coridan (Fri Feb 01 2008 - 11:48:19 CST)
  • Axel Kohlmeyer (Fri Feb 01 2008 - 11:48:12 CST)
  • Axel Kohlmeyer (Fri Feb 01 2008 - 08:55:39 CST)
  • Robert Coridan (Fri Feb 01 2008 - 06:12:42 CST)
• RDF from a trajectory generated by SIESTA
  • Giacomo Fiorin (Tue May 19 2020 - 15:12:53 CDT)
  • Linda Sheila Medondjio (Tue May 19 2020 - 14:10:32 CDT)
• RDF in big trejectory
  • Ondrej Kroutil (Thu Apr 30 2015 - 06:04:23 CDT)
• RDF Normalization
  • Axel Kohlmeyer (Wed Jan 08 2014 - 20:28:28 CST)
  • Axel Kohlmeyer (Mon Jan 06 2014 - 16:23:10 CST)
  • Mike Makowski (Mon Jan 06 2014 - 15:14:21 CST)
• rdf plugin in vmd 1.85
  • Axel Kohlmeyer (Wed Sep 13 2006 - 14:24:10 CDT)
  • dimka (Wed Sep 13 2006 - 14:08:29 CDT)
• RDF related problems
  • Axel Kohlmeyer (Sat Sep 24 2011 - 16:19:21 CDT)
  • siladitya mukherjee (Sat Sep 24 2011 - 15:17:37 CDT)
• rdf using gui
  • syma (Tue Mar 27 2007 - 16:49:06 CDT)
  • Axel Kohlmeyer (Tue Mar 27 2007 - 16:44:09 CDT)
  • syma (Tue Mar 27 2007 - 16:18:57 CDT)
• rdf with respect to a specific point
  • Axel Kohlmeyer (Thu Aug 25 2022 - 17:37:03 CDT)
  • michaelmorgan937_at_gmail.com (Thu Aug 25 2022 - 17:15:07 CDT)
  • Axel Kohlmeyer (Wed Aug 24 2022 - 17:16:42 CDT)
  • michaelmorgan937_at_gmail.com (Wed Aug 24 2022 - 13:17:33 CDT)
• RDF witth center of mass as selection
  • alberto (Tue Feb 26 2019 - 12:04:15 CST)
  • Jérôme Hénin (Tue Feb 26 2019 - 11:10:38 CST)
  • alberto (Tue Feb 26 2019 - 10:08:03 CST)
• RDF.tcl
  • Axel Kohlmeyer (Fri Jul 28 2006 - 17:28:49 CDT)
  • griadi_at_utalca.cl (Fri Jul 28 2006 - 17:01:24 CDT)
  • John Stone (Fri Oct 14 2005 - 15:18:53 CDT)
  • bizoniusz_at_o2.pl (Fri Oct 14 2005 - 07:02:26 CDT)
• rdf.tcl one more time
  • John Stone (Mon Oct 17 2005 - 17:20:20 CDT)
  • bizoniusz_at_o2.pl (Mon Oct 17 2005 - 10:19:28 CDT)
• RDFs Calculation incorporating PBC
  • Axel Kohlmeyer (Mon Jan 23 2017 - 06:43:25 CST)
  • Mehta, Rushita (Mon Jan 23 2017 - 05:58:53 CST)
• RDFs etc
  • Storr, Mark (Mon May 06 2002 - 11:18:54 CDT)
• RDFs, TCFs etc.
  • John Stone (Mon May 06 2002 - 10:15:14 CDT)
• Re : ellipsoidal particles
  • Tru Huynh (Mon May 03 2010 - 02:57:21 CDT)
  • Germain Vallverdu (Sun May 02 2010 - 15:29:22 CDT)
• RE : Get the camera position
  • SAPAY Nicolas 232321 (Thu Dec 01 2011 - 04:22:34 CST)
• RE : namd-l: AW: Occupancy maps
  • Andrei Tudor (Mon Aug 12 2013 - 10:40:27 CDT)
• RE : NVIDIA GeForce GT 750M and CUDA
  • Andrei Tudor (Sat Oct 26 2013 - 11:32:18 CDT)
  • Andrei Tudor (Sat Oct 26 2013 - 10:26:38 CDT)
• RE : pbc tools in vmd for simulation
  • Knut Jørgen Bjuland (Sun Apr 18 2010 - 00:54:27 CDT)
  • Olaf Lenz (Sat Apr 17 2010 - 10:06:32 CDT)
  • bharat gupta (Sat Apr 17 2010 - 08:40:16 CDT)
• RE : PCA of desmond trajectories
  • John Stone (Wed Feb 01 2012 - 10:41:58 CST)
  • Hitesh Patel (Wed Feb 01 2012 - 10:26:44 CST)
• RE : Plot the value of the current frame in the Progress Bar for elapsed Time
  • Axel Kohlmeyer (Thu Dec 02 2010 - 13:44:37 CST)
• RE : Replica exchange, colvars & harmonic restraints
  • Andrei Tudor (Mon Jul 29 2013 - 13:22:45 CDT)
• re :psfgen question
  • li (Fri Mar 26 2004 - 01:00:28 CST)
• Re PSF file generation
  • Axel Kohlmeyer (Mon Jul 20 2009 - 08:49:33 CDT)
  • karthigeyan karthigeyantp (Mon Jul 20 2009 - 07:34:51 CDT)
• Re-centering protein molecule
  • Sourav Ray (Wed Jan 28 2015 - 05:14:56 CST)
• re-centering view/rotation axes
  • Charles McCallum (Mon Aug 11 2003 - 17:03:37 CDT)
• Re-create Figures in VMD Images and Movies Tutorial
  • John Stone (Sun Mar 30 2008 - 15:51:16 CDT)
  • Dong Xu (Mon Mar 17 2008 - 16:17:57 CDT)
• Re-numbering resID after psfgen
  • Kevin C Chan (Wed May 27 2015 - 04:39:15 CDT)
  • Axel Kohlmeyer (Wed May 27 2015 - 01:05:52 CDT)
  • Kevin C Chan (Wed May 27 2015 - 00:18:58 CDT)
• Re2: ERROR: graphics: color index value '1057' out of range
  • John Stone (Sun Feb 27 2011 - 22:03:44 CST)
  • Jervis Chu (Sun Feb 27 2011 - 20:43:03 CST)
• RE??? RE??? proper enviroment for the VMD namdenergy plugin
  • John Stone (Tue May 20 2014 - 10:12:50 CDT)
• Read CHARMM VDW radii into VMD
  • John Stone (Sat Apr 11 2015 - 12:47:02 CDT)
  • Gianluca Interlandi (Sat Apr 11 2015 - 02:22:42 CDT)
• Read dcd file error using vmd1.8.5 for windows
  • John Stone (Wed Nov 29 2006 - 15:04:27 CST)
  • Shaojie Ma (Tue Nov 28 2006 - 00:41:53 CST)
  • John Stone (Mon Nov 27 2006 - 22:21:59 CST)
  • Shaojie Ma (Mon Nov 27 2006 - 21:49:46 CST)
• read setting from text file
  • Marco Di Gennaro (TME) (Wed Mar 02 2022 - 03:48:17 CST)
  • Vermaas, Josh (Tue Mar 01 2022 - 09:08:04 CST)
  • Axel Kohlmeyer (Tue Mar 01 2022 - 09:00:17 CST)
  • Marco Di Gennaro (TME) (Tue Mar 01 2022 - 07:59:38 CST)
• Read support for CHARMM binary coordinate file?
  • Chang, Christopher (Thu Aug 25 2005 - 17:59:55 CDT)
  • John Stone (Thu Aug 25 2005 - 17:44:57 CDT)
  • Chang, Christopher (Tue Aug 23 2005 - 17:28:31 CDT)
• read the pdb file using VMD
  • Avell Diroll (Wed Mar 07 2007 - 17:39:38 CST)
  • Axel Kohlmeyer (Tue Mar 06 2007 - 01:30:16 CST)
  • Esther Brugger (Mon Mar 05 2007 - 17:00:36 CST)
• read vector lammps with VMD
  • alberto (Fri Mar 08 2019 - 04:14:34 CST)
• read_next_timestep(...)
  • John Stone (Tue Feb 21 2006 - 09:53:55 CST)
  • Marco Kalweit (Tue Feb 21 2006 - 07:08:40 CST)
• readable files
  • J. Rui Rodrigues (Mon Aug 02 2004 - 15:58:29 CDT)
  • John Stone (Mon Aug 02 2004 - 15:50:33 CDT)
  • pinisetty dinesh (Mon Aug 02 2004 - 14:47:58 CDT)
• reading .vel files and .veldcd files
  • Mao Mao (Wed May 18 2011 - 10:50:46 CDT)
• Reading a pdbqt file (generated from AutoDock)
  • John Stone (Fri Jul 20 2007 - 13:27:53 CDT)
  • Arneh Babakhani (Fri Jul 20 2007 - 12:35:24 CDT)
  • John Stone (Fri Jul 20 2007 - 11:27:39 CDT)
  • Arneh Babakhani (Fri Jul 20 2007 - 09:19:00 CDT)
  • Axel Kohlmeyer (Fri Jul 20 2007 - 00:02:24 CDT)
  • Arneh Babakhani (Thu Jul 19 2007 - 18:01:01 CDT)
• Reading additional atom properties
  • Lutz Maibaum (Tue May 15 2007 - 20:46:25 CDT)
  • John Stone (Tue May 15 2007 - 13:12:34 CDT)
  • Lutz Maibaum (Thu May 03 2007 - 20:07:12 CDT)
• Reading Amber .crd files
  • John Stone (Tue Jul 18 2006 - 12:38:26 CDT)
  • campen_at_geosc.psu.edu (Tue Jul 18 2006 - 12:25:17 CDT)
• Reading Amber .prd and PARM files into VMD
  • John Stone (Tue Jul 18 2006 - 12:37:27 CDT)
  • campen_at_geosc.psu.edu (Tue Jul 18 2006 - 08:32:37 CDT)
• Reading arrays in VMD
  • JC Gumbart (Thu Sep 08 2005 - 11:37:27 CDT)
  • VISWANADHA SRIDHARA (Thu Sep 08 2005 - 03:38:02 CDT)
• reading big xtc file
  • Smolin, Nikolai (Fri Jan 06 2017 - 09:15:49 CST)
  • Ajasja LjubetiÄ� (Fri Jan 06 2017 - 02:14:07 CST)
  • Vermaas, Joshua (Thu Jan 05 2017 - 17:14:17 CST)
  • Axel Kohlmeyer (Thu Jan 05 2017 - 16:25:48 CST)
  • Smolin, Nikolai (Thu Jan 05 2017 - 15:58:26 CST)
• Reading box info. from PQR file
  • John Stone (Tue Nov 07 2006 - 17:05:14 CST)
  • Axel Kohlmeyer (Mon Oct 30 2006 - 10:54:13 CST)
  • Bob Johnson (Mon Oct 30 2006 - 10:02:43 CST)
• reading chain labels from amber prmtop
  • Baker, Joseph (Fri Sep 08 2023 - 07:15:42 CDT)
• reading charmm files
  • Axel Kohlmeyer (Mon Mar 05 2007 - 11:56:34 CST)
  • George Madalin Giambasu (Mon Mar 05 2007 - 08:57:11 CST)
  • Axel Kohlmeyer (Mon Mar 05 2007 - 08:27:12 CST)
  • Grazia Daminelli (Mon Mar 05 2007 - 07:48:22 CST)
• Reading chemical bonds by VMD from AMBER parm7 files
  • John Stone (Wed Jan 21 2015 - 12:28:06 CST)
  • Francesco Pietra (Wed Jan 21 2015 - 11:52:10 CST)
  • John Stone (Wed Jan 14 2015 - 10:44:32 CST)
  • Francesco Pietra (Sat Jan 10 2015 - 12:12:07 CST)
• reading cmap wih vmd
  • Charles McCallum (Fri Aug 18 2006 - 10:23:57 CDT)
  • John Stone (Thu Aug 17 2006 - 23:43:50 CDT)
  • L. Michel Espinoza-Fonseca (Thu Aug 17 2006 - 19:17:26 CDT)
• reading cube files
  • John Stone (Thu Aug 22 2002 - 11:34:29 CDT)
  • Vlad Cojocaru (Thu Aug 22 2002 - 10:58:09 CDT)
• Reading DL_POLY trajectory
  • Ashar Malik (Sat May 26 2018 - 20:28:34 CDT)
  • Ali Ahmed (Sat May 26 2018 - 20:02:17 CDT)
• reading DLPoly VMD 1.8.4
  • Mgr. Lubos Vrbka (Sat May 20 2006 - 04:24:10 CDT)
  • John Stone (Fri May 19 2006 - 15:28:44 CDT)
  • Mgr. Lubos Vrbka (Thu May 18 2006 - 14:40:41 CDT)
  • John Stone (Thu May 18 2006 - 11:42:17 CDT)
  • Javier Sacristan (Wed May 17 2006 - 17:55:26 CDT)
• Reading from file
  • Ashar Malik (Mon Apr 04 2016 - 01:36:25 CDT)
  • divyabharathi korlepara (Mon Apr 04 2016 - 00:51:49 CDT)
• Reading GOLD .sdf output files
  • Todd J. Furlong (Tue Apr 30 2002 - 09:09:03 CDT)
• Reading in a MOL2 file
  • Peter Freddolino (Tue May 29 2007 - 12:16:16 CDT)
  • Mark Zottola (Tue May 29 2007 - 11:31:44 CDT)
• reading in trajectory file causes VMD to crash
  • Tim Lo (Fri Jul 10 2015 - 22:08:19 CDT)
  • Richard Wood (Mon Jul 06 2015 - 20:56:05 CDT)
  • Axel Kohlmeyer (Mon Jul 06 2015 - 20:45:15 CDT)
  • Richard Wood (Mon Jul 06 2015 - 20:14:20 CDT)
  • Axel Kohlmeyer (Mon Jul 06 2015 - 20:12:10 CDT)
  • Richard Wood (Mon Jul 06 2015 - 19:52:11 CDT)
• Reading in unit cell
  • Justin Gullingsrud (Mon Nov 17 2003 - 22:15:14 CST)
  • David Chalmers (Mon Nov 17 2003 - 17:45:13 CST)
• Reading large traj file error or how to divide a large traj file into parts?
  • John Stone (Wed Sep 10 2003 - 16:07:34 CDT)
  • Peng Tao (Wed Sep 10 2003 - 15:12:44 CDT)
  • John Stone (Wed Sep 10 2003 - 14:56:18 CDT)
  • Peng Tao (Wed Sep 10 2003 - 14:15:43 CDT)
• Reading MatStudio/ LAMMPS structures to VMD
  • Axel Kohlmeyer (Fri Oct 29 2010 - 11:37:11 CDT)
  • Aric Newton (Fri Oct 29 2010 - 09:16:30 CDT)
  • Axel Kohlmeyer (Tue Oct 26 2010 - 09:43:48 CDT)
  • Axel Kohlmeyer (Sun Oct 24 2010 - 17:02:38 CDT)
  • Aric Newton (Sat Oct 23 2010 - 18:45:06 CDT)
• reading minimalised pdb files
  • Andrew Dalke (Tue Oct 07 1997 - 04:34:33 CDT)
  • Nithin Rai (Tue Oct 07 1997 - 04:12:06 CDT)
• reading multiples molecules.
  • Axel Kohlmeyer (Wed Oct 29 2008 - 11:07:55 CDT)
  • Leonardo Trabuco (Wed Oct 29 2008 - 10:29:36 CDT)
  • Axel Kohlmeyer (Wed Oct 29 2008 - 10:14:50 CDT)
  • no tengo nombre (Wed Oct 29 2008 - 05:26:09 CDT)
  • no tengo nombre (Wed Oct 29 2008 - 04:17:12 CDT)
  • Axel Kohlmeyer (Tue Oct 28 2008 - 09:20:54 CDT)
  • Benjamin Bouvier (Tue Oct 28 2008 - 06:15:45 CDT)
  • no tengo nombre (Tue Oct 28 2008 - 05:05:19 CDT)
• Reading new amber prmtop formats.
  • John Stone (Thu Sep 17 2009 - 12:50:48 CDT)
  • John Stone (Wed Sep 16 2009 - 16:08:07 CDT)
  • Thomas C. Bishop (Wed Sep 16 2009 - 15:37:17 CDT)
  • John Stone (Wed Sep 16 2009 - 13:46:26 CDT)
  • Axel Kohlmeyer (Wed Sep 16 2009 - 13:28:37 CDT)
  • Crowley, Michael (Wed Sep 16 2009 - 12:21:42 CDT)
• reading of one frame from DCD file
  • Eduard Schreiner (Tue Nov 30 2010 - 19:44:55 CST)
  • JhonY. I. (Tue Nov 30 2010 - 18:13:14 CST)
  • JhonY. I. (Tue Nov 30 2010 - 18:12:03 CST)
• Reading output of quantum packages and plotting orbitals
  • saam (Fri Oct 23 2009 - 10:21:07 CDT)
  • John Stone (Fri Oct 23 2009 - 09:49:38 CDT)
  • Ignacio Fernández Galván (Fri Oct 23 2009 - 09:29:32 CDT)
  • saam (Fri Oct 23 2009 - 08:39:32 CDT)
  • Ignacio Fernández Galván (Fri Oct 23 2009 - 03:29:22 CDT)
  • John Stone (Mon Oct 05 2009 - 21:10:49 CDT)
  • Axel Kohlmeyer (Fri Oct 02 2009 - 11:52:09 CDT)
  • Ignacio Fernández Galván (Fri Oct 02 2009 - 03:01:36 CDT)
  • Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
  • Ignacio Fernández Galván (Wed Sep 30 2009 - 11:57:35 CDT)
• Reading PSF files with longer than 4-letter atom types
  • Mayne, Christopher G (Wed Aug 13 2014 - 14:36:47 CDT)
  • Mayne, Christopher G (Wed Aug 13 2014 - 12:57:38 CDT)
  • Alexander Balaeff (Wed Aug 13 2014 - 13:12:06 CDT)
  • John Stone (Wed Aug 13 2014 - 12:21:27 CDT)
  • Josh Vermaas (Wed Aug 13 2014 - 11:55:16 CDT)
  • Alexander Balaeff (Wed Aug 13 2014 - 10:59:22 CDT)
• Reading PSF with extended atom types
  • Gianluca Interlandi (Wed Jun 22 2011 - 00:05:18 CDT)
• reading rst7 files generated by cpptraj
  • John Stone (Fri Feb 03 2017 - 00:18:05 CST)
  • Vlad Cojocaru (Fri Jan 27 2017 - 04:28:30 CST)
• reading structure *.xyz
  • Axel Kohlmeyer (Tue Jul 20 2004 - 17:39:02 CDT)
  • Luciano (Tue Jul 20 2004 - 13:57:30 CDT)
• Reading the SMD information form the log file
  • Chris Harrison (Fri Dec 02 2011 - 11:37:38 CST)
  • Molybdos Kirkimpolakis (Fri Dec 02 2011 - 10:34:27 CST)
  • Molybdos Kirkimpolakis (Wed Nov 30 2011 - 14:54:45 CST)
• Reading trajectories from FMO-MD run
  • John Stone (Thu Sep 20 2012 - 14:43:26 CDT)
  • Rasoul Nasiri (Wed Sep 19 2012 - 05:00:20 CDT)
• reading/writing
  • Ioana Cozmuta (Thu Aug 28 2003 - 20:10:53 CDT)
  • John Stone (Thu Aug 28 2003 - 19:58:15 CDT)
  • John Stone (Thu Aug 28 2003 - 15:38:18 CDT)
  • Ioana Cozmuta (Mon Aug 25 2003 - 19:29:55 CDT)
  • John Stone (Mon Aug 25 2003 - 19:11:16 CDT)
  • Ioana Cozmuta (Mon Aug 25 2003 - 18:24:27 CDT)
• Readpsf Error
  • Isuru Herath (Sun Nov 29 2020 - 10:15:42 CST)
  • Isuru Herath (Sun Nov 29 2020 - 10:22:56 CST)
  • Aravinda Munasinghe (Sun Nov 29 2020 - 10:19:45 CST)
  • Isuru Herath (Sun Nov 29 2020 - 09:38:20 CST)
  • Aravinda Munasinghe (Sun Nov 29 2020 - 09:29:34 CST)
  • Aravinda Munasinghe (Sun Nov 29 2020 - 09:20:28 CST)
  • Aravinda Munasinghe (Sun Nov 29 2020 - 09:11:45 CST)
  • Isuru Herath (Sun Nov 29 2020 - 09:03:17 CST)
  • Isuru Herath (Sun Nov 29 2020 - 08:58:31 CST)
  • Isuru Herath (Sun Nov 29 2020 - 08:56:47 CST)
  • Aravinda Munasinghe (Sun Nov 29 2020 - 08:48:32 CST)
  • Peter Freddolino (Sat Nov 28 2020 - 18:03:01 CST)
  • Isuru Herath (Sat Nov 28 2020 - 13:01:55 CST)
• ReadVarXYZ and measure gofr
  • Axel Kohlmeyer (Fri Feb 24 2017 - 15:12:28 CST)
  • Tyler Westland (Fri Feb 24 2017 - 14:47:15 CST)
• reagsrding writemol2
  • Peter Freddolino (Fri Dec 05 2008 - 09:00:29 CST)
  • jani sahil (Fri Dec 05 2008 - 00:11:42 CST)
• Real Cash, Real Profit....Believe it !!!
  • cashprofit3_at_address.com (Tue Mar 21 2000 - 00:09:55 CST)
• real coordinates
  • Axel Kohlmeyer (Fri Jul 18 2008 - 12:08:25 CDT)
  • Maria Sanchez Farran (Thu Jul 17 2008 - 21:40:46 CDT)
• Real-time ambient occlusion lighting
  • John Stone (Wed Oct 13 2010 - 11:22:46 CDT)
  • Ajasja LjubetiÄ� (Wed Oct 13 2010 - 11:12:57 CDT)
  • John Stone (Wed Oct 13 2010 - 10:43:47 CDT)
  • Ajasja LjubetiÄ� (Wed Oct 13 2010 - 06:01:01 CDT)
  • John Stone (Tue Oct 12 2010 - 19:58:12 CDT)
  • Boris Steipe (Tue Oct 12 2010 - 19:07:16 CDT)
  • John Stone (Tue Oct 12 2010 - 16:24:42 CDT)
  • Ajasja LjubetiÄ� (Tue Oct 12 2010 - 15:54:00 CDT)
• Real-time Representation Changes During Interactive MD
  • Chris Ing (Thu Jan 03 2013 - 18:14:29 CST)
  • John Stone (Thu Dec 20 2012 - 09:56:01 CST)
  • Chris Ing (Wed Dec 19 2012 - 11:36:22 CST)
• RealD (Stereographics) E2SGI emitter on Quadro 3450?
  • John Stone (Fri Aug 18 2006 - 22:33:36 CDT)
  • Sabuj Pattanayek (Fri Aug 18 2006 - 20:25:24 CDT)
• Rebuilding lipid from headgroup coordinates only using psfgen, some atoms put on origin
  • Jim Phillips (Sat Sep 08 2007 - 21:56:51 CDT)
  • maria goranovic (Wed Sep 05 2007 - 11:05:12 CDT)
• Rebuilding psf file
  • Siew Wen Leong (Wed Nov 23 2011 - 04:45:38 CST)
• Recall: Hbond analysis message
  • George Tzotzos (Tue Dec 20 2011 - 13:52:02 CST)
• Recent Geforce Cuda GPU cards(GT 440, GTX 560ti)
  • John Stone (Wed Apr 13 2011 - 12:57:44 CDT)
  • Burgess, Don E (Wed Apr 13 2011 - 11:26:02 CDT)
• Recent martini top+par+cgc files
  • Sourav Ray (Thu Mar 19 2015 - 06:34:03 CDT)
• Recent VMD-L mails, etc..
  • John Stone (Wed Jun 30 2004 - 13:40:21 CDT)
• recenter
  • Olaf Lenz (Tue Apr 05 2011 - 02:29:57 CDT)
  • Mark M Huntress (Mon Apr 04 2011 - 15:04:17 CDT)
  • Olaf Lenz (Mon Apr 04 2011 - 02:11:25 CDT)
  • Mark M Huntress (Sun Apr 03 2011 - 16:34:17 CDT)
• Recenter membrane bilayer to unit cell
  • Olaf Lenz (Wed May 12 2010 - 04:55:06 CDT)
  • Mühlbacher, Markus (Wed May 12 2010 - 03:37:13 CDT)
• recenter peptide in PBC
  • John Stone (Wed Jan 03 2007 - 10:38:43 CST)
  • _at_huji.ac.il (Tue Dec 26 2006 - 04:54:20 CST)
• Recentering the box on target molecule and wraping
  • Arturas Ziemys (Mon Sep 11 2006 - 10:39:55 CDT)
• Recognition of backbone in 5'-end
  • Sanjeev B.S. (Fri Jan 30 2004 - 05:40:46 CST)
• Recognized atom types by VMD PDB reader
  • John Stone (Fri Jul 20 2007 - 13:31:15 CDT)
  • Arneh Babakhani (Fri Jul 20 2007 - 12:52:48 CDT)
• Recognizing Chlorine atoms in VMD
  • John Stone (Mon Feb 09 2015 - 15:28:59 CST)
  • Debasish Mandal (Tue Feb 03 2015 - 13:56:20 CST)
• recognizing TCL variables in a matrix argument
  • Axel Kohlmeyer (Thu Apr 15 2010 - 19:45:15 CDT)
  • Ronald Salesky (Thu Apr 15 2010 - 16:06:56 CDT)
• Recommended Hardware
  • Jason Hogrefe (Mon Mar 16 2020 - 11:52:08 CDT)
  • Josh Vermaas (Sat Mar 14 2020 - 23:14:06 CDT)
  • Morgan Hoffman (Sat Mar 14 2020 - 19:56:09 CDT)
• Recommended method to attach labels to atoms in VMD
  • Josh Vermaas (Wed Jan 13 2016 - 16:39:19 CST)
  • Eric Smoll (Wed Jan 13 2016 - 15:33:47 CST)
• Recompile VMD with larger index types
  • John Stone (Mon Jun 11 2018 - 10:10:57 CDT)
  • Axel Kohlmeyer (Sun May 11 2008 - 11:18:17 CDT)
  • Alexandre A. Vakhrouchev (Sun May 11 2008 - 11:20:47 CDT)
  • John Stone (Sun May 11 2008 - 00:48:35 CDT)
  • Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
  • John Stone (Sat May 10 2008 - 10:24:43 CDT)
  • Alexandre A. Vakhrouchev (Sat May 10 2008 - 07:36:43 CDT)
• reconstructing PMF
  • Ioana Cozmuta (Tue Apr 11 2006 - 16:57:02 CDT)
• Reconstruction of XST data from DCD data
  • Axel Kohlmeyer (Sun May 01 2011 - 20:15:06 CDT)
  • B.M.B. Vanschouwen (Sun May 01 2011 - 19:29:03 CDT)
• record changed {x y z}
  • Paul Grayson (Wed Mar 20 2002 - 13:31:50 CST)
  • Yufang Wang (Wed Mar 20 2002 - 10:50:02 CST)
• recovery -e file name w/in vmd
  • Thomas C. Bishop (Fri Jul 10 2015 - 16:05:26 CDT)
• redefining macros vs. update of selections
  • John Stone (Tue Jun 26 2007 - 14:52:31 CDT)
  • Axel Kohlmeyer (Mon Jun 25 2007 - 19:28:53 CDT)
• redhat linux vmd
  • John Stone (Tue May 23 2006 - 13:09:02 CDT)
  • a a (Mon May 22 2006 - 21:18:43 CDT)
  • John Stone (Mon May 22 2006 - 16:19:39 CDT)
  • a a (Mon May 22 2006 - 03:51:59 CDT)
• redirecting to output
  • John Stone (Thu Sep 22 2011 - 01:42:26 CDT)
  • Kei Sit (Thu Sep 22 2011 - 00:32:53 CDT)
  • kirtana S (Wed Sep 21 2011 - 13:31:52 CDT)
• Reduce size/number of nodes/image quality while rendering VRML 2.0 file
  • Wei-Lan Lin (Tue Aug 20 2019 - 17:10:13 CDT)
• Reduce Waterbox Dimensions Post Simulation
  • Aaron Oakley (Mon Mar 01 2021 - 20:07:39 CST)
  • Mcguire, Kelly (Mon Mar 01 2021 - 18:13:04 CST)
• Redundant entries in force field parameters generated by paratool plugin in VMD
  • John Stone (Thu Mar 04 2021 - 09:39:23 CST)
  • John Stone (Wed Mar 03 2021 - 21:30:41 CST)
  • Mandayam Bharathi, Harsha (Wed Mar 03 2021 - 12:03:25 CST)
• reference about structure
  • John Stone (Tue Oct 29 2002 - 09:49:31 CST)
  • Vlad Cojocaru (Tue Oct 29 2002 - 04:34:57 CST)
• Reference for SASA
  • John Stone (Tue Aug 14 2007 - 15:38:20 CDT)
  • Patrick Redmill (Sat Aug 11 2007 - 17:48:03 CDT)
• Reference to SASA calculation in VMD
  • John Stone (Thu Oct 20 2005 - 15:20:13 CDT)
  • Basak Isin (Tue Oct 18 2005 - 10:12:24 CDT)
• Refreshing the screen
  • John Stone (Thu May 04 2006 - 17:09:17 CDT)
  • Chang Hu (Thu May 04 2006 - 14:12:16 CDT)
  • Chang Hu (Thu May 04 2006 - 13:24:47 CDT)
  • John Stone (Thu May 04 2006 - 12:25:38 CDT)
  • Chang Hu (Thu May 04 2006 - 11:58:12 CDT)
• REG building non standard solvent simulation box.
  • surya narayanan chandrasekaran (Thu Nov 29 2018 - 06:08:46 CST)
  • Peter Freddolino (Wed Nov 28 2018 - 07:51:17 CST)
  • surya narayanan chandrasekaran (Wed Nov 28 2018 - 03:27:16 CST)
• reg compilation of vmd 1.9.3
  • John Stone (Mon Jul 30 2018 - 14:37:17 CDT)
  • subramanian vidhyasankar (Sun Jul 29 2018 - 08:38:56 CDT)
• reg extracting coordinates for first water shell.
  • surya narayanan chandrasekaran (Tue Feb 11 2014 - 06:52:31 CST)
• reg FFTK
  • Mayne, Christopher G (Tue Sep 10 2013 - 16:23:10 CDT)
  • surya narayanan chandrasekaran (Tue Sep 10 2013 - 14:12:27 CDT)
• reg FFTK BOND opt
  • Mayne, Christopher G (Wed Sep 04 2013 - 08:32:32 CDT)
  • surya narayanan chandrasekaran (Tue Sep 03 2013 - 11:54:26 CDT)
  • Mayne, Christopher G (Tue Sep 03 2013 - 11:57:54 CDT)
  • Mayne, Christopher G (Tue Sep 03 2013 - 09:35:50 CDT)
  • surya narayanan chandrasekaran (Mon Aug 26 2013 - 10:16:02 CDT)
• reg interaction energy
  • Mayne, Christopher G (Mon Jul 08 2013 - 15:00:28 CDT)
  • surya narayanan chandrasekaran (Tue Jul 02 2013 - 11:08:33 CDT)
• reg list of non standard residues.
  • Axel Kohlmeyer (Sat Apr 11 2015 - 18:03:49 CDT)
  • surya narayanan chandrasekaran (Sat Apr 11 2015 - 16:57:05 CDT)
• reg membrane hydration using tcl script of vmd
  • subramanian vidhyasankar (Sat Sep 22 2018 - 08:14:09 CDT)
• REG: adding hydrogens using TCL
  • surya narayanan chandrasekaran (Fri Sep 25 2015 - 15:34:23 CDT)
  • John Stone (Fri Sep 25 2015 - 15:02:07 CDT)
  • surya narayanan chandrasekaran (Fri Sep 25 2015 - 11:11:41 CDT)
• Reg: BABEL
  • Shantipriya Tenneti (Sun Jul 13 2003 - 15:30:20 CDT)
• Reg: General question!
  • Shantipriya Tenneti (Mon Sep 08 2003 - 11:26:39 CDT)
• Reg: No. of Frames
  • Justin Gullingsrud (Mon Jul 28 2003 - 13:40:12 CDT)
  • Axel Kohlmeyer (Mon Jul 28 2003 - 13:33:51 CDT)
  • Shantipriya Tenneti (Mon Jul 28 2003 - 13:04:31 CDT)
  • Axel Kohlmeyer (Mon Jul 28 2003 - 02:13:51 CDT)
  • Shantipriya Tenneti (Sun Jul 27 2003 - 02:11:09 CDT)
• Reg: Peptide dimer
  • Amit Jaiswal (Wed Oct 01 2014 - 23:12:13 CDT)
  • Tim Lo (Wed Oct 01 2014 - 06:49:33 CDT)
  • Richard Wood (Wed Oct 01 2014 - 05:54:59 CDT)
  • Ajasja LjubetiÄ� (Wed Oct 01 2014 - 04:45:43 CDT)
  • Amit Jaiswal (Wed Oct 01 2014 - 03:42:30 CDT)
  • Amit Jaiswal (Tue Sep 30 2014 - 06:18:14 CDT)
• reg: PHI HEOM tool
  • surya narayanan chandrasekaran (Tue Jun 11 2019 - 05:12:30 CDT)
• Reg: RMSF
  • Adupa Vasista (Wed Nov 13 2019 - 02:40:29 CST)
  • John Stone (Wed Nov 13 2019 - 00:33:24 CST)
  • Adupa Vasista (Tue Nov 05 2019 - 10:25:13 CST)
• Reg:Babel
  • Shantipriya Tenneti (Sun Jul 13 2003 - 14:57:10 CDT)
• regarding .vmdrc file
  • Monoj Mon Kalita (Tue Jun 17 2014 - 03:47:44 CDT)
  • Josh Vermaas (Tue Jun 17 2014 - 02:10:24 CDT)
  • Axel Kohlmeyer (Tue Jun 17 2014 - 01:02:54 CDT)
  • Monoj Mon Kalita (Mon Jun 16 2014 - 20:53:54 CDT)
• regarding 1ORQ.pdb
  • Viswanadham Sridhara (Thu Dec 15 2005 - 14:37:17 CST)
• Regarding adding extra strand in a beta barrel
  • Shashank Ranjan Srivastava (Mon Mar 02 2020 - 03:59:13 CST)
• Regarding APBS calculation in VMD
  • Axel Kohlmeyer (Tue Jul 17 2007 - 07:43:04 CDT)
  • naga raju (Tue Jul 17 2007 - 07:39:06 CDT)
• Regarding arsorite files
  • Yogesh Sharma (Tue Sep 15 2020 - 10:02:19 CDT)
  • Raman Preet Singh (Tue Sep 15 2020 - 08:15:13 CDT)
  • Axel Kohlmeyer (Tue Sep 15 2020 - 08:10:10 CDT)
  • Basanta Acharya (Tue Sep 15 2020 - 06:59:12 CDT)
• Regarding atom index in VMD
  • Smith, Harper E. (Tue Sep 14 2021 - 09:30:53 CDT)
  • Vermaas, Josh (Mon Sep 13 2021 - 15:19:31 CDT)
  • Arpita Srivastava (Mon Sep 13 2021 - 14:20:59 CDT)
• Regarding calculating principal Axis Vectors using VMD
  • John Stone (Fri Dec 20 2013 - 16:03:08 CST)
  • ssaurabh_at_physics.iisc.ernet.in (Fri Dec 20 2013 - 14:09:28 CST)
• regarding capsid inner volume
  • san kumar (Tue Apr 30 2019 - 16:24:23 CDT)
• regarding cionize
  • xiaoyu qing (Sun May 19 2019 - 03:30:07 CDT)
  • Peter Freddolino (Fri May 17 2019 - 12:01:23 CDT)
  • san kumar (Fri May 17 2019 - 09:56:50 CDT)
• Regarding com file error
  • JC Gumbart (Wed Feb 07 2007 - 16:32:46 CST)
  • Javaria Ahmad (Wed Feb 07 2007 - 16:10:15 CST)
  • Jan Saam (Mon Feb 05 2007 - 12:57:27 CST)
  • Axel Kohlmeyer (Mon Feb 05 2007 - 12:20:12 CST)
  • John Stone (Mon Feb 05 2007 - 10:01:01 CST)
  • Javaria Ahmed (Sun Feb 04 2007 - 23:23:40 CST)
• Regarding coordinates transformation
  • aneesh cna (Thu Feb 25 2010 - 23:51:15 CST)
  • John Stone (Thu Feb 25 2010 - 16:33:13 CST)
  • aneesh cna (Wed Feb 24 2010 - 01:04:27 CST)
• regarding counting water molecules
  • Joshua Adelman (Wed Dec 22 2010 - 07:26:33 CST)
• Regarding Distance measurements
  • DHEERAJ CHITARA (Thu Jun 11 2020 - 05:57:49 CDT)
• regarding draw_arrow.tcl
  • Falgun Shah (Fri Mar 13 2009 - 10:40:47 CDT)
  • John Stone (Fri Mar 13 2009 - 10:14:21 CDT)
  • Axel Kohlmeyer (Fri Mar 13 2009 - 09:51:23 CDT)
  • Falgun Shah (Fri Mar 13 2009 - 08:56:31 CDT)
  • Axel Kohlmeyer (Wed Mar 11 2009 - 11:30:30 CDT)
  • John Stone (Wed Mar 11 2009 - 10:36:05 CDT)
  • Falgun Shah (Mon Mar 09 2009 - 17:55:58 CDT)
• regarding FFTK
  • surya narayanan chandrasekaran (Thu Jun 27 2013 - 04:13:00 CDT)
  • Mayne, Christopher G (Wed Jun 12 2013 - 16:34:11 CDT)
  • surya narayanan chandrasekaran (Wed Jun 12 2013 - 11:11:36 CDT)
  • Mayne, Christopher G (Tue Jun 11 2013 - 15:32:40 CDT)
  • Mayne, Christopher G (Tue Jun 11 2013 - 08:42:01 CDT)
  • Mayne, Christopher G (Mon Jun 10 2013 - 17:32:22 CDT)
  • Mayne, Christopher G (Mon Jun 10 2013 - 16:11:19 CDT)
  • surya narayanan chandrasekaran (Mon Jun 10 2013 - 15:55:19 CDT)
  • Mayne, Christopher G (Thu May 30 2013 - 15:46:28 CDT)
  • surya narayanan chandrasekaran (Thu May 30 2013 - 14:43:57 CDT)
  • Mayne, Christopher G (Thu May 30 2013 - 13:56:35 CDT)
  • JC Gumbart (Thu May 30 2013 - 13:30:07 CDT)
  • Mayne, Christopher G (Thu May 30 2013 - 13:34:35 CDT)
  • surya narayanan chandrasekaran (Thu May 30 2013 - 13:20:02 CDT)
  • Mayne, Christopher G (Thu May 30 2013 - 10:17:42 CDT)
  • surya narayanan chandrasekaran (Thu May 30 2013 - 06:11:28 CDT)
  • Mayne, Christopher G (Tue May 28 2013 - 12:13:33 CDT)
  • Bennion, Brian (Tue May 28 2013 - 11:09:20 CDT)
  • surya narayanan chandrasekaran (Mon May 27 2013 - 11:02:39 CDT)
• regarding FFTK improper angle
  • surya narayanan chandrasekaran (Mon Jul 22 2013 - 11:08:37 CDT)
• Regarding FFTK option
  • Mayne, Christopher G (Mon Aug 05 2013 - 15:41:40 CDT)
  • surya narayanan chandrasekaran (Mon Aug 05 2013 - 12:06:32 CDT)
• regarding fit_angle.tcl
  • jani vinod (Wed May 19 2010 - 01:41:34 CDT)
  • John Stone (Tue May 18 2010 - 23:40:16 CDT)
  • jani vinod (Tue May 18 2010 - 23:14:46 CDT)
  • John Stone (Tue May 18 2010 - 16:02:37 CDT)
  • jani vinod (Tue May 11 2010 - 07:04:20 CDT)
• Regarding fit_angle.tcl script
  • Chola Regmi (Sat Jan 12 2013 - 10:23:01 CST)
  • Grace Brannigan (Sat Jan 12 2013 - 01:01:27 CST)
  • Chola Regmi (Fri Jan 11 2013 - 22:19:58 CST)
  • Chola Regmi (Thu Jan 10 2013 - 10:45:59 CST)
• Regarding fitframes.tcl
  • Eduard Schreiner (Tue Jan 04 2011 - 07:48:33 CST)
  • pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 07:37:45 CST)
  • pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 06:41:21 CST)
  • Eduard Schreiner (Tue Jan 04 2011 - 05:31:58 CST)
  • pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 04:51:39 CST)
• Regarding generating force field
  • Saumik Sen (Wed Oct 21 2015 - 01:50:33 CDT)
• regarding generating movie
  • jani sahil (Fri Dec 04 2009 - 23:56:42 CST)
  • John Stone (Fri Dec 04 2009 - 14:06:51 CST)
  • jani sahil (Fri Dec 04 2009 - 02:49:19 CST)
• Regarding generating psf file
  • Chitrak Gupta (Thu Oct 15 2015 - 09:32:29 CDT)
  • Saumik Sen (Thu Oct 15 2015 - 08:41:39 CDT)
  • Chitrak Gupta (Thu Oct 15 2015 - 08:14:38 CDT)
  • Saumik Sen (Thu Oct 15 2015 - 03:49:50 CDT)
• regarding h-bod calculation in tk console
  • Jai Kumar (Sun Dec 02 2018 - 00:17:49 CST)
• Regarding image quality in vmd
  • Dallas Warren (Mon Feb 18 2019 - 14:51:11 CST)
  • Saikat Pal (Mon Feb 18 2019 - 04:35:08 CST)
• regarding inner volume of a micelle
  • Snehasis Chatterjee (Tue Oct 15 2019 - 15:38:28 CDT)
• regarding installation
  • John Stone (Sun Apr 11 2010 - 22:25:56 CDT)
  • Asfa Ali (Fri Apr 09 2010 - 10:45:45 CDT)
• Regarding installation of DruGui
  • Fotis Baltoumas (Tue Mar 27 2018 - 04:11:36 CDT)
  • Pratik Narain Srivastava (Tue Mar 27 2018 - 02:03:09 CDT)
  • Brian Radak (Mon Mar 26 2018 - 11:12:57 CDT)
  • John Stone (Sun Mar 25 2018 - 11:52:48 CDT)
  • SM Bargeen A Turzo (Sat Mar 24 2018 - 06:30:29 CDT)
  • SM Bargeen A Turzo (Fri Mar 23 2018 - 23:23:04 CDT)
• Regarding membrane thickness
  • Ramon Guixà (Tue Apr 11 2017 - 03:59:52 CDT)
  • John Stone (Tue Apr 11 2017 - 03:13:10 CDT)
  • John Stone (Wed Apr 05 2017 - 14:27:11 CDT)
  • Shashank Ranjan Srivastava (Wed Apr 05 2017 - 06:46:29 CDT)
• regarding merging of protein and a ligand
  • Joshua Adelman (Sat Nov 06 2010 - 18:03:19 CDT)
  • Axel Kohlmeyer (Sat Nov 06 2010 - 16:54:53 CDT)
  • vani panguluri (Sat Nov 06 2010 - 15:43:13 CDT)
• Regarding merging of two files
  • John Stone (Wed Nov 03 2010 - 13:40:30 CDT)
  • Joshua Adelman (Wed Nov 03 2010 - 13:44:08 CDT)
  • vani panguluri (Wed Nov 03 2010 - 13:30:40 CDT)
  • Joseph Bylund (Wed Nov 03 2010 - 13:08:21 CDT)
  • John Stone (Wed Nov 03 2010 - 13:03:11 CDT)
  • vani panguluri (Wed Nov 03 2010 - 12:18:16 CDT)
• Regarding Network Analysis
  • GAGANJYOT KAUR BAKSHI (Wed Jan 18 2023 - 02:01:29 CST)
• Regarding paratool
  • Jan Saam (Wed Jan 31 2007 - 14:14:01 CST)
  • Jan Saam (Mon Jan 29 2007 - 11:00:14 CST)
  • John Stone (Fri Jan 26 2007 - 02:10:24 CST)
  • Javaria Ahmed (Wed Jan 24 2007 - 16:18:01 CST)
• Regarding paratool, assign atom types
  • Jan Saam (Wed Jan 31 2007 - 14:30:55 CST)
  • Javaria Ahmed (Mon Jan 29 2007 - 16:22:17 CST)
  • Jan Saam (Mon Jan 29 2007 - 10:56:30 CST)
• Regarding pbc tool: pbc join fragment -bondlist + topo tool
  • Axel Kohlmeyer (Sat Feb 06 2016 - 07:41:31 CST)
  • M K (Sat Feb 06 2016 - 07:23:08 CST)
• Regarding PBC unwrap
  • Gumbart, JC (Sat Apr 13 2019 - 07:34:59 CDT)
  • Angana Ray (Fri Apr 12 2019 - 17:44:45 CDT)
• Regarding Periodic MSM calculation
  • John Stone (Thu Feb 03 2022 - 23:14:43 CST)
  • Subhasish Mallick (Wed Feb 02 2022 - 02:08:16 CST)
• regarding positioning of protein molecule
  • Ramya Gamini (Thu Jun 25 2009 - 01:48:07 CDT)
• regarding radius of a 3D sphere
  • san kumar (Tue Jan 29 2019 - 11:55:01 CST)
• Regarding RDF and Cordination number calculatin
  • Axel Kohlmeyer (Wed Apr 04 2018 - 05:04:34 CDT)
  • Jeams Anderson (Wed Apr 04 2018 - 02:40:42 CDT)
• Regarding RDF calculation
  • Philippe Bopp (Fri Dec 01 2017 - 11:27:33 CST)
  • Aashish Bhatt (Fri Dec 01 2017 - 09:32:36 CST)
• regarding representations, resolution and length of trajectory movies
  • John Stone (Tue Oct 02 2012 - 14:55:31 CDT)
  • Derya Meral (Tue Oct 02 2012 - 13:00:54 CDT)
• Regarding RMSD
  • Ashar Malik (Wed Dec 03 2014 - 01:13:42 CST)
  • Seera Suryanarayana (Wed Dec 03 2014 - 00:53:03 CST)
• regarding rotating dihedral
  • Peter Freddolino (Wed Sep 17 2008 - 22:39:40 CDT)
  • John Stone (Wed Sep 17 2008 - 21:58:14 CDT)
  • jani sahil (Tue Sep 16 2008 - 22:26:17 CDT)
• Regarding saving data
  • John Stone (Wed Apr 04 2012 - 15:10:03 CDT)
  • snoze pa (Wed Apr 04 2012 - 12:21:39 CDT)
• regarding selecting complete residues within a distance
  • Eduard Schreiner (Fri May 25 2007 - 07:41:48 CDT)
  • naga raju (Fri May 25 2007 - 04:43:49 CDT)
• regarding the coordinate transformation on a curved surface to plane surface
  • Subbarao Kanchi (Wed Jan 09 2019 - 02:30:46 CST)
  • Subbarao Kanchi (Tue Jan 08 2019 - 18:01:28 CST)
• Regarding the latest VMD 1.9.2.alpha builds from BioCoRE
  • John Stone (Fri Sep 21 2012 - 16:45:40 CDT)
  • John Stone (Thu Sep 20 2012 - 16:57:27 CDT)
  • John Stone (Fri Sep 07 2012 - 17:04:52 CDT)
  • Him Bandhu Upadhyay (Tue Sep 04 2012 - 15:59:30 CDT)
  • Him Bandhu Upadhyay (Fri Aug 24 2012 - 15:41:13 CDT)
  • Mayne, Christopher G (Fri Aug 24 2012 - 08:52:15 CDT)
  • Him Bandhu Upadhyay (Thu Aug 23 2012 - 22:47:39 CDT)
  • Him Bandhu Upadhyay (Thu Aug 23 2012 - 22:44:30 CDT)
  • Chris Harrison (Thu Aug 23 2012 - 22:47:10 CDT)
  • John Stone (Thu Aug 23 2012 - 22:42:19 CDT)
  • Chris Harrison (Thu Aug 23 2012 - 22:34:20 CDT)
  • Chris Harrison (Thu Aug 23 2012 - 22:00:46 CDT)
  • Wang Yi (Thu Aug 23 2012 - 21:57:27 CDT)
  • Him Bandhu Upadhyay (Thu Aug 23 2012 - 21:01:05 CDT)
• regarding the python interface of vmd
  • Giacomo Fiorin (Tue Jul 11 2017 - 18:46:00 CDT)
  • Vermaas, Joshua (Tue Jul 11 2017 - 12:50:35 CDT)
  • Giacomo Fiorin (Tue Jul 11 2017 - 07:39:33 CDT)
  • Pallab Dutta (Tue Jul 11 2017 - 00:45:48 CDT)
• Regarding the Use of STL Files as Boundary Features
  • John Stone (Thu May 24 2012 - 10:32:08 CDT)
  • Phelan Jr, Frederick R. Dr. (Wed May 23 2012 - 11:05:46 CDT)
• regarding writemol2
  • Peter Freddolino (Sat Dec 06 2008 - 19:42:33 CST)
  • jani sahil (Sat Dec 06 2008 - 00:34:19 CST)
• Regarding zinc parameters in CHARMM force field
  • Gumbart, JC (Mon May 11 2020 - 14:12:25 CDT)
  • varun dewaker (Sat May 09 2020 - 12:40:52 CDT)
• regd arrangment of atom types in psf and par from fftk
  • Josh Vermaas (Sun Sep 15 2013 - 17:04:51 CDT)
  • surya narayanan chandrasekaran (Sun Sep 15 2013 - 13:27:53 CDT)
• Register some cell information in XYZ files
  • Luthaf (Mon Apr 06 2020 - 09:37:45 CDT)
  • FX (Mon Apr 06 2020 - 05:01:55 CDT)
• regular expression in Tcl
  • Axel Kohlmeyer (Tue Sep 04 2007 - 09:12:58 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Sep 04 2007 - 06:13:56 CDT)
• Regular Expression problem with $
  • Andrew Dalke (Tue Apr 30 2002 - 20:38:10 CDT)
  • jen ramus (Tue Apr 30 2002 - 20:24:52 CDT)
• Rejecting plugin...
  • John Stone (Fri Jun 26 2009 - 14:28:30 CDT)
  • Gustavo Seabra (Thu Jun 25 2009 - 15:15:25 CDT)
  • John Stone (Wed Jun 24 2009 - 22:31:15 CDT)
  • Gustavo Seabra (Wed Jun 24 2009 - 17:53:26 CDT)
  • John Stone (Wed Jun 24 2009 - 14:34:53 CDT)
  • Axel Kohlmeyer (Wed Jun 24 2009 - 14:30:15 CDT)
  • Gustavo Seabra (Wed Jun 24 2009 - 14:04:25 CDT)
• Release Date for v.1.2 ??
  • Simon Hogg (Thu Nov 20 1997 - 17:35:06 CST)
• release memory in TCL
  • Axel Kohlmeyer (Thu Jun 07 2007 - 18:59:10 CDT)
  • Axel Kohlmeyer (Thu Jun 07 2007 - 17:46:50 CDT)
  • Robert Brunner (Thu Jun 07 2007 - 14:32:44 CDT)
  • lily jin (Thu Jun 07 2007 - 11:46:11 CDT)
  • Jerome Henin (Wed Jun 06 2007 - 17:47:26 CDT)
  • Axel Kohlmeyer (Wed Jun 06 2007 - 16:35:17 CDT)
  • lily jin (Wed Jun 06 2007 - 14:44:13 CDT)
• Release of R.E.D. Server
  • FyD (Thu Apr 09 2009 - 03:31:30 CDT)
• Release of R.E.D. Server 2.0
  • FyD (Thu Nov 04 2010 - 04:50:36 CDT)
• Release of RESP ESP charge DDatabase
  • FyD (Mon Jan 16 2006 - 10:06:08 CST)
• Release of the R.E.D.-III tools
  • FyD (Sun Apr 15 2007 - 05:22:35 CDT)
• Release of the R.E.D.-III.1 tools
  • FyD (Mon Jan 12 2009 - 05:59:14 CST)
• Release of the R.E.D.-III.4 tools
  • FyD (Wed Jul 07 2010 - 02:04:36 CDT)
• Release of the R.E.D.-III.5 tools
  • FyD (Wed Feb 22 2012 - 05:00:23 CST)
• Reliable w4tches for everyone at Prest1ge Repl1cas
  • Michele Garrett (Sat Apr 21 2007 - 10:20:56 CDT)
• REMD + RBCG
  • Peter Freddolino (Wed Aug 18 2010 - 00:30:20 CDT)
  • Gregorio Alanislobato (Tue Aug 17 2010 - 19:51:10 CDT)
  • Gregorio Alanislobato (Tue Aug 17 2010 - 18:26:08 CDT)
  • Peter Freddolino (Tue Aug 17 2010 - 18:14:05 CDT)
  • Gregorio Alanislobato (Tue Aug 17 2010 - 16:12:22 CDT)
• Remembering Klaus Schulten
  • Thomas C. Bishop (Tue Nov 01 2016 - 09:33:31 CDT)
• Reminder NAMD Developer Meeting 2019
  • giuseppe_at_ks.uiuc.edu (Tue Jul 09 2019 - 10:55:30 CDT)
• Reminder: Hands-On Workshop on Computational Biophysics in Auburn, AL
  • Sinclair, Matt (Mon Apr 29 2024 - 12:39:54 CDT)
  • Mariano Spivak (Fri May 19 2023 - 12:31:05 CDT)
• Remote Control
  • Timm Essigke (Mon Feb 21 2000 - 12:12:44 CST)
• remote control (fifo/socket) ?
  • John Stone (Tue Feb 04 2003 - 10:08:06 CST)
  • Oliver Beckstein (Tue Feb 04 2003 - 09:58:54 CST)
• Remote control of VMD on SGI-NT mixture
  • Andrew Hall (Wed Apr 26 2000 - 11:11:50 CDT)
• remote display
  • Juan Alfredo Freites (Thu Dec 11 2003 - 12:28:18 CST)
  • John Stone (Thu Dec 11 2003 - 10:39:01 CST)
  • Juan Alfredo Freites (Sat Dec 06 2003 - 23:16:38 CST)
• Remote IMD simulation
  • Axel Kohlmeyer (Sat Nov 06 2021 - 13:38:23 CDT)
  • Georcki Ropon (Sat Nov 06 2021 - 12:03:57 CDT)
• Remote indirect GLX, Xquartz and nvidia drivers
  • Osman Barış MalcıoÄŸlu (Wed Nov 29 2017 - 03:42:49 CST)
• Remote visualisation inconsistency
  • Cara Kreck (Thu Aug 28 2014 - 02:33:13 CDT)
  • John Stone (Wed Aug 27 2014 - 11:56:20 CDT)
  • Cara Kreck (Wed Aug 27 2014 - 11:37:39 CDT)
• remote visualization
  • Thomas C. Bishop (Wed Feb 22 2017 - 17:38:45 CST)
• remote_ctl.tcl: VMD's stdout -> socket ?
  • Oliver Beckstein (Wed Feb 12 2003 - 17:22:38 CST)
  • Justin Gullingsrud (Wed Feb 12 2003 - 16:46:36 CST)
  • Justin Gullingsrud (Wed Feb 12 2003 - 16:43:19 CST)
  • Oliver Beckstein (Wed Feb 12 2003 - 16:10:04 CST)
• remove a selection in vmd?
  • Wang Yi (Sun Jul 01 2012 - 00:09:54 CDT)
  • Fatemesadat Emami (Sat Jun 30 2012 - 21:50:36 CDT)
• remove atoms in a geometric shape using VMD
  • Vermaas, Josh (Fri May 06 2022 - 15:44:01 CDT)
  • Mohammed GOUNZARI (Fri May 06 2022 - 14:26:06 CDT)
• remove hydrogen atoms from psf file
  • Axel Kohlmeyer (Wed Sep 18 2013 - 09:48:34 CDT)
  • Yunjie Zhao (Wed Sep 18 2013 - 08:30:59 CDT)
  • Yunjie Zhao (Wed Sep 18 2013 - 08:32:07 CDT)
  • Axel Kohlmeyer (Wed Sep 18 2013 - 03:22:51 CDT)
  • Yunjie Zhao (Wed Sep 18 2013 - 01:57:38 CDT)
• remove my email from mailing list
  • Rejwan (Wed Jan 27 2021 - 22:06:53 CST)
• Remove overlapping solvent molecules
  • Axel Kohlmeyer (Thu May 23 2013 - 08:37:09 CDT)
  • Michele Formica (Thu May 23 2013 - 07:40:44 CDT)
• Remove PBC
  • Peter Freddolino (Sun Dec 21 2008 - 21:30:56 CST)
  • Alessandro.Maiorana_at_roma2.infn.it (Sun Dec 21 2008 - 04:09:38 CST)
• remove vmd in ubuntu
  • v.satarifard (Mon Jul 29 2013 - 09:43:51 CDT)
  • Olaf Lenz (Mon Jul 29 2013 - 01:50:58 CDT)
  • v.satarifard (Sun Jul 28 2013 - 02:52:17 CDT)
• remove vmd package in centos
  • John Stone (Mon Feb 09 2015 - 11:15:59 CST)
  • Marzieh Dehghan (Sun Feb 08 2015 - 08:07:59 CST)
• remove water
  • snoze pa (Wed Dec 23 2009 - 14:44:45 CST)
• REMOVE WATER MOLECULES WITH A SPECIFIC DISTANCE
  • Karteek K. Bejagam (Sun May 16 2021 - 14:15:17 CDT)
  • Eduardo Estevez (Sun May 16 2021 - 13:13:06 CDT)
• removed all proton in protein with vmd
  • Nicolas SAPAY (Mon Jul 27 2009 - 03:36:38 CDT)
  • albert albert (Mon Jul 27 2009 - 01:40:34 CDT)
• Removing all non polar hydrogens
  • Francesco Pietra (Sat Jun 27 2015 - 01:32:59 CDT)
  • Josh Vermaas (Fri Jun 26 2015 - 14:55:56 CDT)
  • Francesco Pietra (Fri Jun 26 2015 - 12:57:00 CDT)
• removing all water molecules
  • Salvatore Mario Cosseddu (Thu Jan 27 2011 - 10:27:32 CST)
  • Dudo (Thu Jan 27 2011 - 09:41:49 CST)
  • Salvatore Mario Cosseddu (Thu Jan 27 2011 - 09:14:40 CST)
  • Axel Kohlmeyer (Thu Jan 27 2011 - 08:28:46 CST)
  • Joshua Adelman (Thu Jan 27 2011 - 08:24:09 CST)
  • Ajasja LjubetiÄ� (Thu Jan 27 2011 - 07:37:57 CST)
  • Axel Kohlmeyer (Thu Jan 27 2011 - 08:08:27 CST)
  • Dudo (Thu Jan 27 2011 - 08:05:54 CST)
  • Dudo (Thu Jan 27 2011 - 07:40:16 CST)
  • ahmet yýldýrým (Thu Jan 27 2011 - 06:51:34 CST)
• Removing an installed Plug-in
  • John Stone (Thu Jan 31 2013 - 09:19:19 CST)
  • aneesh cna (Thu Jan 31 2013 - 00:26:49 CST)
• removing bonds across periodic boundary in a video
  • Charlesworth, Henry (Fri Aug 21 2015 - 07:49:27 CDT)
  • Axel Kohlmeyer (Thu Aug 20 2015 - 14:38:26 CDT)
  • Charlesworth, Henry (Thu Aug 20 2015 - 12:44:22 CDT)
• Removing perspective projection at startup
  • Stéphane Teletchéa (Fri Mar 01 2002 - 03:12:43 CST)
  • Justin Gullingsrud (Thu Feb 28 2002 - 11:19:35 CST)
  • Alan Wilter Sousa da Silva (Thu Feb 28 2002 - 12:27:47 CST)
  • John Stone (Thu Feb 28 2002 - 09:41:57 CST)
  • Stéphane Teletchéa (Thu Feb 28 2002 - 07:11:37 CST)
• removing residues/fragments from the system
  • Streiff, John H. (Tue Feb 17 2004 - 10:15:37 CST)
  • Kim, Kwiseon (Sun Feb 15 2004 - 09:09:07 CST)
  • Satyavani Vemparala (Sat Feb 14 2004 - 21:00:02 CST)
• removing rotation in trajectories
  • Axel Kohlmeyer (Wed Dec 20 2017 - 10:38:40 CST)
  • Ajasja LjubetiÄ� (Wed Dec 20 2017 - 10:29:56 CST)
  • Seibold, Steve Allan (Wed Dec 20 2017 - 10:11:12 CST)
• removing structures from a psf&pdb
  • Marcos Sotomayor (Mon Aug 28 2006 - 10:55:50 CDT)
  • JC Gumbart (Mon Aug 28 2006 - 00:56:18 CDT)
  • Thomas Caulfield (Fri Aug 25 2006 - 15:58:40 CDT)
• removing surrounding water molecules
  • p.w.fowler_at_qmul.ac.uk (Fri Feb 13 2004 - 17:04:08 CST)
  • John Stone (Fri Feb 13 2004 - 17:40:24 CST)
  • Kim, Kwiseon (Fri Feb 13 2004 - 16:51:33 CST)
  • Brian Bennion (Fri Feb 13 2004 - 16:53:24 CST)
  • Bamidele Adisa (Fri Feb 13 2004 - 16:03:15 CST)
• removing unwanted residues
  • Justin Gullingsrud (Thu Aug 31 2000 - 12:03:21 CDT)
  • B. Bennion (Thu Aug 31 2000 - 11:57:00 CDT)
• removing water from dcd file
  • amin_at_imtech.res.in (Tue Mar 18 2014 - 12:03:26 CDT)
  • Adam Goler (Tue Mar 18 2014 - 09:09:38 CDT)
  • Axel Kohlmeyer (Tue Mar 18 2014 - 08:55:15 CDT)
  • Ramin Ekhteiari (Tue Mar 18 2014 - 08:01:41 CDT)
• removing water from inside the membranes in a duplicate membrane system
  • Olya Kravchenko (Wed Jan 06 2016 - 15:51:47 CST)
• Removing water in tcl
  • JC Gumbart (Fri Jan 05 2007 - 00:13:53 CST)
  • John Stone (Thu Jan 04 2007 - 16:38:59 CST)
  • Cesar Luis Avila (Thu Jan 04 2007 - 16:13:49 CST)
  • nunolf_at_ci.uc.pt (Thu Jan 04 2007 - 11:03:59 CST)
  • Cesar Luis Avila (Thu Jan 04 2007 - 10:23:15 CST)
• removing water inside the nanotube
  • Ajasja LjubetiÄ� (Wed Oct 29 2014 - 05:07:28 CDT)
  • Ashar Malik (Wed Oct 29 2014 - 03:54:03 CDT)
  • Asis Jana (Tue Oct 28 2014 - 23:24:57 CDT)
  • Ajasja LjubetiÄ� (Tue Oct 28 2014 - 11:54:41 CDT)
  • Asis Jana (Tue Oct 28 2014 - 11:19:42 CDT)
• removing water molecules
  • John Stone (Mon Jun 04 2007 - 15:31:53 CDT)
  • Atila Iamarino (Mon Jun 04 2007 - 13:21:33 CDT)
• Removing water molecules from nanotubes
  • RAHUL SURESH (Mon Feb 03 2020 - 04:56:45 CST)
• removing waters (gramicidin example)
  • Charles McCallum (Thu Oct 27 2005 - 15:26:01 CDT)
  • Charles McCallum (Thu Oct 27 2005 - 15:46:22 CDT)
  • Charles McCallum (Thu Oct 27 2005 - 12:57:46 CDT)
• Renaming Molecule Names in existing .xyz trajectory files
  • John Stone (Tue Jul 04 2006 - 23:11:56 CDT)
  • Adrian Koh (Tue Jul 04 2006 - 23:07:57 CDT)
  • John Stone (Tue Jul 04 2006 - 22:37:09 CDT)
  • Adrian Koh (Tue Jul 04 2006 - 01:44:28 CDT)
• render
  • John Stone (Thu Apr 03 2008 - 00:24:30 CDT)
  • John Stone (Tue Apr 01 2008 - 14:14:12 CDT)
  • Dongsheng Zhang (Tue Apr 01 2008 - 14:22:17 CDT)
  • Dongsheng Zhang (Mon Mar 31 2008 - 15:51:35 CDT)
• render "color by volume"
  • Axel Kohlmeyer (Tue Jun 17 2008 - 18:34:28 CDT)
  • Nicolas Sapay (Tue Jun 17 2008 - 17:11:45 CDT)
  • Axel Kohlmeyer (Tue Jun 17 2008 - 14:51:28 CDT)
  • Gerald Mathias (Tue Jun 17 2008 - 13:27:15 CDT)
• Render alpha-carbon trace as cartoon
  • John Stone (Fri Feb 06 2009 - 12:23:33 CST)
  • Patrick Buck (Thu Feb 05 2009 - 13:57:54 CST)
• Render as Object or 3DS file
  • Tom.Verhelst_at_ucb.com (Tue Mar 03 2015 - 11:13:25 CST)
  • John Stone (Mon Mar 02 2015 - 11:25:19 CST)
  • Tom.Verhelst_at_ucb.com (Mon Mar 02 2015 - 06:01:09 CST)
• Render command not executed
  • Nicolas SAPAY (Wed Aug 19 2009 - 04:59:45 CDT)
  • Axel Kohlmeyer (Wed Aug 19 2009 - 04:30:36 CDT)
  • Nicolas SAPAY (Wed Aug 19 2009 - 02:22:18 CDT)
• Render image background-free
  • John Stone (Tue Mar 02 2021 - 15:40:11 CST)
  • Pacci Evaristo, Felipe Fabricio (Tue Mar 02 2021 - 15:52:59 CST)
  • Vermaas, Josh (Tue Mar 02 2021 - 15:17:59 CST)
  • Pawel Kedzierski (Tue Mar 02 2021 - 14:58:22 CST)
  • Pacci Evaristo, Felipe Fabricio (Tue Mar 02 2021 - 13:43:02 CST)
• Render in spherical equirectangular projection
  • John Stone (Fri Nov 10 2017 - 22:16:35 CST)
  • Dallas Warren (Tue Nov 07 2017 - 17:16:12 CST)
  • Dallas Warren (Mon Oct 30 2017 - 20:08:00 CDT)
• RENDER ISSUES
  • JC Gumbart (Thu Jun 07 2007 - 09:07:34 CDT)
  • Claire Zerafa (Thu Jun 07 2007 - 08:48:17 CDT)
• render question
  • John Stone (Fri Jun 17 2005 - 17:42:27 CDT)
  • Samuel Flores (Fri Jun 17 2005 - 10:43:49 CDT)
• Render Snapshot from the Tcl console (jpg gif format)
  • Arneh Babakhani (Sun Dec 02 2007 - 23:24:35 CST)
  • John Stone (Sun Dec 02 2007 - 21:19:51 CST)
  • Arneh Babakhani (Sun Dec 02 2007 - 20:57:41 CST)
  • Axel Kohlmeyer (Sun Dec 02 2007 - 20:34:21 CST)
  • Arneh Babakhani (Sun Dec 02 2007 - 20:45:38 CST)
  • John Stone (Sun Dec 02 2007 - 19:53:20 CST)
  • Arneh Babakhani (Sun Dec 02 2007 - 18:31:17 CST)
  • L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:59:55 CST)
  • L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:58:31 CST)
  • Arneh Babakhani (Sun Dec 02 2007 - 15:02:52 CST)
• Render straight to ffmpeg/NVENC ?
  • John Stone (Wed Apr 05 2023 - 23:05:51 CDT)
  • Diego Gomes (Wed Apr 05 2023 - 15:08:10 CDT)
• Render surface colored by electrostatic potential
  • Axel Kohlmeyer (Tue Oct 28 2008 - 14:03:47 CDT)
  • Adam Kraut (Tue Oct 28 2008 - 13:27:52 CDT)
• render text in VMD with Tachyon
  • John Stone (Thu Feb 23 2006 - 12:39:51 CST)
  • Vlad Cojocaru (Thu Feb 23 2006 - 09:07:54 CST)
• render to png, and ppm
  • Brad Noyes (Sun Jul 13 2003 - 20:47:15 CDT)
• Render to Tachyon Internal in a Tcl script
  • Eduard Schreiner (Thu Jun 16 2005 - 01:41:30 CDT)
  • Yalini (Tue Jun 14 2005 - 19:52:56 CDT)
• Render VR scenes in VMD 1.9.2 (possible?)
  • John Stone (Wed Jun 22 2016 - 22:38:36 CDT)
  • Fernando Vallejos-Burgos (Wed Jun 22 2016 - 22:07:49 CDT)
• rendering
  • John Stone (Fri Sep 27 2013 - 13:30:02 CDT)
  • Axel Kohlmeyer (Thu Sep 26 2013 - 15:13:03 CDT)
  • Luciano Pinho (Thu Sep 26 2013 - 07:01:49 CDT)
  • John Stone (Thu Jul 29 2004 - 17:54:11 CDT)
  • Harindar Keer (Thu Jul 29 2004 - 17:49:51 CDT)
• Rendering "draw text" in Povray
  • John Stone (Thu Oct 04 2012 - 23:26:00 CDT)
  • Joshua D. Moore (Thu Oct 04 2012 - 15:49:15 CDT)
  • Joshua D. Moore (Thu Oct 04 2012 - 12:12:32 CDT)
• Rendering .dat files created from Movie Maker using Tachyon
  • John Stone (Tue Nov 16 2010 - 23:43:17 CST)
  • Eduard Schreiner (Tue Nov 16 2010 - 23:39:58 CST)
  • Truc Kim (Tue Nov 16 2010 - 22:53:54 CST)
  • Eduard Schreiner (Tue Nov 16 2010 - 11:25:07 CST)
  • Axel Kohlmeyer (Tue Nov 16 2010 - 10:43:38 CST)
  • Truc Kim (Tue Nov 16 2010 - 06:34:12 CST)
• Rendering 3D 360 Movies at higher resolution
  • Dallas Warren (Wed Oct 04 2017 - 16:35:41 CDT)
  • John Stone (Tue Oct 03 2017 - 13:58:52 CDT)
  • Dallas Warren (Mon Oct 02 2017 - 21:11:33 CDT)
  • Dallas Warren (Mon Oct 02 2017 - 21:14:47 CDT)
  • Dallas Warren (Mon Oct 02 2017 - 21:19:56 CDT)
  • Giacomo Fiorin (Mon Oct 02 2017 - 18:06:26 CDT)
  • Chris Neale (Mon Oct 02 2017 - 18:03:28 CDT)
  • Dallas Warren (Mon Oct 02 2017 - 16:47:59 CDT)
  • Vermaas, Joshua (Mon Oct 02 2017 - 12:22:25 CDT)
  • Dallas Warren (Sun Oct 01 2017 - 06:46:06 CDT)
  • Dallas Warren (Wed Sep 27 2017 - 23:01:17 CDT)
• Rendering electrostatic surface potentials using Tachyon
  • John Stone (Fri Apr 10 2009 - 10:22:45 CDT)
  • JT (Thu Apr 09 2009 - 15:14:41 CDT)
  • John Stone (Thu May 01 2008 - 21:56:13 CDT)
  • Jason Winget (Thu May 01 2008 - 15:39:31 CDT)
• rendering from VMD
  • B. Bennion (Tue Dec 17 2002 - 15:56:45 CST)
  • Marcela Madrid (Tue Dec 17 2002 - 15:53:41 CST)
  • B. Bennion (Tue Dec 17 2002 - 14:36:07 CST)
  • Marcela Madrid (Tue Dec 17 2002 - 13:58:57 CST)
• Rendering high quality obj, x3d and other files for use in other 3D representation systems
  • James Kress (Sat Apr 02 2016 - 23:11:04 CDT)
  • John Stone (Sat Apr 02 2016 - 23:04:09 CDT)
  • James Kress (Sat Apr 02 2016 - 22:54:03 CDT)
  • John Stone (Sat Apr 02 2016 - 22:44:07 CDT)
  • James Kress (Sat Apr 02 2016 - 22:14:08 CDT)
  • John Stone (Sat Apr 02 2016 - 21:20:57 CDT)
  • James Kress (Sat Apr 02 2016 - 16:09:00 CDT)
• rendering high resolution images
  • John Stone (Mon Apr 24 2006 - 16:30:38 CDT)
  • Al Courey (Mon Apr 24 2006 - 16:19:52 CDT)
• Rendering Images from VMD
  • Phuong Chau (Tue Aug 07 2018 - 12:20:48 CDT)
• Rendering images like those shown on VMD home page
  • John Stone (Sun Jan 15 2017 - 02:49:30 CST)
  • Amit Gupta (Sat Jan 14 2017 - 07:30:10 CST)
  • Amit Gupta (Sat Jan 14 2017 - 02:58:58 CST)
  • John Stone (Sat Jan 14 2017 - 00:49:55 CST)
  • Amit Gupta (Sat Jan 14 2017 - 00:32:03 CST)
  • John Stone (Fri Jan 13 2017 - 23:18:08 CST)
  • Amit Gupta (Fri Jan 13 2017 - 22:57:34 CST)
• Rendering incompletion during Tachyon rendering
  • John Stone (Tue Jul 31 2018 - 21:41:59 CDT)
  • Tony Myung Keun Cho (Tue Jul 31 2018 - 19:22:46 CDT)
• Rendering Labels with Tachyon
  • Axel Kohlmeyer (Thu Apr 24 2008 - 17:29:10 CDT)
  • Leonardo Trabuco (Thu Apr 24 2008 - 18:13:06 CDT)
  • Anthony Ivetac (Thu Apr 24 2008 - 17:43:08 CDT)
  • Axel Kohlmeyer (Thu Apr 24 2008 - 14:45:02 CDT)
  • Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
  • John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
  • Anthony Ivetac (Wed Apr 23 2008 - 18:18:33 CDT)
• Rendering long and high-quality movies from VMD
  • Bjoern Olausson (Wed Dec 07 2011 - 10:58:01 CST)
  • Axel Kohlmeyer (Sun Dec 04 2011 - 23:19:35 CST)
  • Axel Kohlmeyer (Sun Dec 04 2011 - 23:27:48 CST)
  • David Cohen-Tanugi (Sun Dec 04 2011 - 21:35:40 CST)
• Rendering of screen/display different
  • John Stone (Tue Apr 27 2004 - 00:26:28 CDT)
  • Dallas Warren (Mon Apr 26 2004 - 20:45:57 CDT)
  • Dallas Warren (Mon Apr 26 2004 - 20:28:14 CDT)
  • John Stone (Mon Apr 26 2004 - 11:58:41 CDT)
  • Dallas Warren (Sun Apr 25 2004 - 16:11:12 CDT)
  • John Stone (Fri Apr 23 2004 - 10:53:51 CDT)
  • Dallas Warren (Thu Apr 22 2004 - 17:21:36 CDT)
  • John Stone (Thu Apr 22 2004 - 15:59:02 CDT)
  • Dallas Warren (Wed Apr 21 2004 - 16:40:10 CDT)
  • John Stone (Wed Apr 21 2004 - 10:51:57 CDT)
  • Eamon Caddigan (Wed Apr 21 2004 - 10:24:16 CDT)
  • Dallas Warren (Wed Apr 21 2004 - 00:36:56 CDT)
  • Dallas Warren (Wed Apr 21 2004 - 00:36:12 CDT)
• Rendering options
  • John Stone (Wed Sep 02 2015 - 15:29:12 CDT)
  • Eric Smoll (Wed Sep 02 2015 - 15:17:11 CDT)
• Rendering polyhedra with POV-Ray
  • John Stone (Tue Aug 18 2009 - 10:59:37 CDT)
  • Nicolas Sapay (Tue Aug 18 2009 - 11:11:35 CDT)
  • Nicolas Sapay (Tue Aug 18 2009 - 10:54:44 CDT)
  • John Stone (Tue Aug 18 2009 - 10:23:05 CDT)
  • Nicolas SAPAY (Tue Aug 18 2009 - 09:53:10 CDT)
• Rendering problem
  • John Stone (Fri Sep 12 2008 - 11:27:01 CDT)
  • Axel Kohlmeyer (Fri Sep 12 2008 - 01:25:43 CDT)
  • lillestolen (Thu Sep 11 2008 - 14:16:29 CDT)
• rendering problems
  • Claire Zerafa (Thu Jun 07 2007 - 09:37:13 CDT)
  • John Stone (Tue Oct 11 2005 - 20:12:57 CDT)
  • Turman, Cheri M (Tue Oct 11 2005 - 11:51:37 CDT)
• rendering question
  • Axel Kohlmeyer (Thu Jan 19 2012 - 11:55:22 CST)
  • John Stone (Thu Jan 19 2012 - 11:31:20 CST)
  • Alex Angerhofer (Thu Jan 19 2012 - 10:56:59 CST)
• Rendering resolution
  • Giacomo Fiorin (Mon Mar 02 2020 - 13:34:42 CST)
  • Josh Vermaas (Mon Mar 02 2020 - 12:50:48 CST)
  • Norouzi, Seyed (Mon Mar 02 2020 - 10:02:46 CST)
• Rendering snapshots
  • DEBOSTUTI GHOSHDASTIDAR (Wed Aug 13 2014 - 12:20:17 CDT)
  • John Stone (Wed Aug 13 2014 - 09:31:25 CDT)
  • DEBOSTUTI GHOSHDASTIDAR (Wed Aug 13 2014 - 00:21:32 CDT)
  • DEBOSTUTI GHOSHDASTIDAR (Wed Aug 13 2014 - 00:06:32 CDT)
  • John Stone (Tue Aug 12 2014 - 10:11:46 CDT)
  • DEBOSTUTI GHOSHDASTIDAR (Tue Aug 12 2014 - 08:23:50 CDT)
• Rendering structures with Hydrogen Bonds using Tachyon
  • Saumyak Mukherjee (Mon Sep 12 2022 - 02:25:16 CDT)
  • Diego Gomes (Fri Sep 09 2022 - 13:44:38 CDT)
  • Saumyak Mukherjee (Fri Sep 09 2022 - 08:18:21 CDT)
• Rendering surfaces from PLT files
  • John Stone (Tue Jul 25 2006 - 12:41:53 CDT)
  • Sergio Urahata (Mon Jul 24 2006 - 12:21:32 CDT)
  • John Stone (Mon Jul 24 2006 - 11:56:51 CDT)
  • Axel Kohlmeyer (Mon Jul 24 2006 - 11:43:42 CDT)
  • Sergio Urahata (Mon Jul 24 2006 - 11:28:07 CDT)
  • Axel Kohlmeyer (Sun Jul 23 2006 - 00:30:08 CDT)
  • Sergio Urahata (Sat Jul 22 2006 - 16:50:02 CDT)
• rendering time bars or other vmd added graphics with povray
  • John Stone (Mon Feb 05 2007 - 15:17:08 CST)
  • Vlad Cojocaru (Mon Feb 05 2007 - 11:31:50 CST)
  • Alexandr Isayev (Mon Feb 05 2007 - 11:23:12 CST)
  • Vlad Cojocaru (Mon Feb 05 2007 - 10:58:48 CST)
• rendering transparent objects
  • Ivan Degtyarenko (Wed Aug 16 2006 - 16:50:44 CDT)
  • Ivan Degtyarenko (Wed Aug 16 2006 - 16:32:57 CDT)
  • John Stone (Wed Aug 16 2006 - 15:43:57 CDT)
  • Ivan Degtyarenko (Wed Aug 16 2006 - 15:34:35 CDT)
• Rendering using GPU
  • Jason Smith (Fri Apr 16 2021 - 13:18:02 CDT)
  • John Stone (Fri Apr 16 2021 - 13:01:03 CDT)
  • Nikhil Maroli (Fri Apr 16 2021 - 12:16:41 CDT)
  • Jason Smith (Thu Apr 15 2021 - 12:51:55 CDT)
  • Carlos Simmerling (Thu Apr 15 2021 - 11:52:07 CDT)
  • John Stone (Thu Apr 15 2021 - 11:38:02 CDT)
  • Jason Smith (Thu Apr 15 2021 - 11:26:05 CDT)
  • John Stone (Thu Apr 15 2021 - 11:23:52 CDT)
  • Jason Smith (Thu Apr 15 2021 - 11:08:29 CDT)
  • John Stone (Thu Apr 15 2021 - 10:20:42 CDT)
  • Geist, Norman (Thu Apr 15 2021 - 03:45:48 CDT)
  • Paul O'Leary (Thu Apr 15 2021 - 03:45:02 CDT)
  • Nikhil Maroli (Thu Apr 15 2021 - 02:31:50 CDT)
• Rendering usong Tachyon with Tcl scripting
  • John Stone (Tue May 10 2016 - 10:11:05 CDT)
  • Felipe Merino (Tue May 10 2016 - 08:37:18 CDT)
  • Remya Ann (Tue May 10 2016 - 07:29:02 CDT)
• rendering with a very large scene description file
  • Vlad Cojocaru (Tue May 04 2021 - 18:09:52 CDT)
  • John Stone (Mon May 03 2021 - 16:10:00 CDT)
  • Vlad Cojocaru (Sun May 02 2021 - 16:55:07 CDT)
  • Vlad Cojocaru (Sun May 02 2021 - 13:10:50 CDT)
• rendering with povray in mac
  • Irem Altan (Thu Jul 21 2016 - 15:04:24 CDT)
  • John Stone (Thu Jul 21 2016 - 15:31:05 CDT)
  • Irem Altan (Thu Jul 21 2016 - 15:25:33 CDT)
• Rendering with Tachyon GPU enabled (TachyonLOptiXInternal) with options
  • John Stone (Sun Nov 27 2016 - 23:58:33 CST)
  • Vermaas, Joshua (Tue Nov 15 2016 - 13:12:23 CST)
  • Ben Lowe (Tue Nov 15 2016 - 12:44:53 CST)
  • Vermaas, Joshua (Sat Nov 12 2016 - 16:46:14 CST)
  • Ben Lowe (Fri Nov 11 2016 - 11:32:47 CST)
• rendering.....
  • Axel Kohlmeyer (Mon Jul 31 2006 - 17:58:57 CDT)
  • Viswanadham Sridhara (Mon Jul 31 2006 - 17:41:26 CDT)
  • John Stone (Mon Jul 31 2006 - 17:39:15 CDT)
  • Viswanadham Sridhara (Mon Jul 31 2006 - 14:39:51 CDT)
• renderman output?
  • Axel Kohlmeyer (Wed May 10 2006 - 19:37:19 CDT)
  • Ralph Jimenez (Wed May 10 2006 - 15:50:47 CDT)
• rending softwares for win98
  • John Stone (Fri Nov 17 2000 - 01:42:17 CST)
  • Eric Hu (Thu Nov 16 2000 - 17:26:20 CST)
• Rending to png format using tachyon or otherwise ?
  • Axel Kohlmeyer (Wed Jun 09 2010 - 13:08:57 CDT)
  • maria goranovic (Wed Jun 09 2010 - 11:18:13 CDT)
  • maria goranovic (Wed Jun 09 2010 - 09:33:25 CDT)
  • John Stone (Wed Jun 09 2010 - 10:06:06 CDT)
• renumbering residues
  • John Stone (Wed Aug 13 2008 - 18:00:59 CDT)
  • Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
• renumbering residues after deletion of atoms
  • Axel Kohlmeyer (Thu Jan 18 2007 - 11:51:48 CST)
  • Himanshu Khandelia (Thu Jan 18 2007 - 09:55:07 CST)
• renumbering water molecules
  • Natal Kanaan (Mon Aug 11 2014 - 11:41:36 CDT)
• Reopening the Discussion on visual VMD container: GLX now enabled
  • Matthew Kenney (Tue Jul 10 2018 - 16:47:00 CDT)
• Reordering atom numbers on a XYZ file
  • Alexandre Barrozo (Mon Dec 05 2016 - 18:39:01 CST)
• Reordering atomselection before saving trajectory
  • Jacob D Durrant (Wed Jun 21 2017 - 18:49:34 CDT)
  • Jérôme Hénin (Thu Jun 01 2017 - 14:45:52 CDT)
  • John Stone (Wed May 31 2017 - 16:37:47 CDT)
  • Jacob D Durrant (Sat May 13 2017 - 19:28:32 CDT)
• repitition of residue numbers in LIPIDS
  • Satyavani Vemparala (Tue Feb 17 2004 - 16:48:51 CST)
  • Jim Phillips (Tue Feb 17 2004 - 17:14:42 CST)
  • Jim Phillips (Mon Feb 16 2004 - 17:55:50 CST)
  • John Stone (Mon Feb 16 2004 - 17:45:08 CST)
  • Satyavani Vemparala (Mon Feb 16 2004 - 15:18:49 CST)
• replace molecule?
  • Axel Kohlmeyer (Wed Jan 16 2008 - 11:02:32 CST)
  • Lucie Huynh (Wed Jan 16 2008 - 03:09:39 CST)
• replacing an existig residue with a novel residue
  • Peter Freddolino (Fri Jan 24 2020 - 07:28:40 CST)
  • LOKI LOKI (Fri Jan 24 2020 - 00:24:36 CST)
• Replacing DPPC with DPPS
  • JC Gumbart (Mon Aug 22 2005 - 00:32:39 CDT)
  • Viswanadham Sridhara (Sun Aug 21 2005 - 12:24:54 CDT)
• Replica Exchange
  • Olaf Lenz (Fri Apr 15 2011 - 04:18:17 CDT)
  • alamng_at_uci.edu (Fri Apr 15 2011 - 02:35:05 CDT)
• Replica exchange molecular dynamics (REMD)
  • Peter Freddolino (Tue Mar 20 2007 - 22:02:58 CDT)
  • Arindam Ganguly (Tue Mar 20 2007 - 21:22:15 CDT)
• Replica exchange, colvars & harmonic restraints
  • Andrei Tudor (Mon Jul 29 2013 - 11:14:01 CDT)
• Replica watch is a perfect gift
  • Christian Courtney (Sun Apr 27 2008 - 04:18:34 CDT)
  • Murray Dyer (Sat Apr 26 2008 - 17:18:11 CDT)
  • Deanna Fleming (Thu Apr 17 2008 - 05:25:56 CDT)
• Replica watches make great gifts
  • Edwina Grove (Sun May 04 2008 - 01:24:11 CDT)
• replicating a trajectory in VMD
  • Axel Kohlmeyer (Sun Mar 19 2017 - 10:55:51 CDT)
  • Philippe Bopp (Sun Mar 19 2017 - 09:10:12 CDT)
  • Aman Jindal (Sun Mar 19 2017 - 06:01:28 CDT)
• replication of bilayer
  • Richard Swenson (Fri Jan 04 2008 - 17:07:16 CST)
  • John Stone (Fri Jan 04 2008 - 12:42:10 CST)
  • Chanda.Jnanojjal_at_edam.uhp-nancy.fr (Wed Dec 26 2007 - 04:08:00 CST)
• reply
  • John Stone (Sat Jan 02 2010 - 08:53:01 CST)
  • Prathit Chatterjee (Sat Jan 02 2010 - 05:33:04 CST)
• reporting various NVidia driver bugs...
  • John Stone (Thu May 18 2006 - 16:14:43 CDT)
• Represent custom peptide as ribbon?
  • Casey Johnson (Sat Aug 27 2011 - 09:24:07 CDT)
• represent water molecules
  • oguz gurbulak (Tue Jan 03 2012 - 03:09:43 CST)
  • oguz gurbulak (Mon Jan 02 2012 - 13:07:45 CST)
  • Axel Kohlmeyer (Mon Jan 02 2012 - 13:19:41 CST)
  • Axel Kohlmeyer (Mon Jan 02 2012 - 11:42:41 CST)
  • Dudo (Mon Jan 02 2012 - 08:49:57 CST)
  • oguz gurbulak (Mon Jan 02 2012 - 05:48:41 CST)
• representation ColorID in Tcl
  • Axel Kohlmeyer (Wed Nov 19 2008 - 12:24:51 CST)
  • Peter Freddolino (Wed Nov 19 2008 - 12:16:07 CST)
  • David Tanner (Wed Nov 19 2008 - 11:25:42 CST)
• representation for multiple molecules
  • Vermaas, Joshua (Mon Aug 22 2016 - 11:28:50 CDT)
  • Akshay Bhatnagar (Sun Aug 21 2016 - 21:23:15 CDT)
• Representation problem
  • Ahmet Bakan (Thu Oct 15 2009 - 12:16:26 CDT)
  • John Stone (Tue Sep 29 2009 - 17:38:21 CDT)
  • Ahmet Bakan (Tue Sep 29 2009 - 09:42:41 CDT)
  • John Stone (Mon Sep 28 2009 - 16:34:18 CDT)
  • Ahmet Bakan (Mon Sep 28 2009 - 16:22:36 CDT)
• representation question
  • Axel Kohlmeyer (Mon Apr 26 2010 - 15:09:17 CDT)
  • Joseph Bylund (Mon Apr 26 2010 - 14:01:40 CDT)
• representation selection funnies
  • John Stone (Wed Mar 28 2007 - 22:25:26 CDT)
  • John Stone (Tue Mar 27 2007 - 14:25:01 CDT)
  • Fred Moore (Tue Mar 27 2007 - 14:06:21 CDT)
• Representation Selections
  • John Stone (Mon Jul 30 2012 - 15:03:54 CDT)
  • Joshua Engelman (Mon Jul 30 2012 - 14:47:57 CDT)
• representation using COM
  • John Stone (Fri Feb 24 2006 - 13:56:40 CST)
  • Anthony Cruz (Fri Feb 24 2006 - 16:53:27 CST)
• representation_problem
  • John Stone (Thu Apr 21 2005 - 16:40:07 CDT)
  • Chang, Christopher (Wed Apr 20 2005 - 16:34:14 CDT)
  • Wei Chen (Wed Apr 20 2005 - 14:21:21 CDT)
• Representing disulfide bonds when using psfgen
  • Paul R Brenner (Thu Jul 21 2005 - 13:26:53 CDT)
  • Wei Chen (Thu Jul 21 2005 - 12:48:58 CDT)
  • Chang, Christopher (Thu Jul 21 2005 - 12:39:06 CDT)
  • Paul R Brenner (Thu Jul 21 2005 - 11:15:30 CDT)
• request ability to append in CatDCD (and NAMD)
  • John Stone (Fri Aug 08 2008 - 14:45:52 CDT)
  • Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
• Request for atom sequence followed by topo tools
  • Swamy Sumanth (Mon Dec 14 2015 - 23:59:25 CST)
• Request for change in gaussian cube reader
  • Axel Kohlmeyer (Tue May 19 2009 - 14:32:10 CDT)
  • Xavier Cartoixa Soler (Tue May 19 2009 - 13:40:37 CDT)
• Request for help in command line in VMD
  • priyaranjini ranju (Thu Jun 06 2019 - 04:30:37 CDT)
• Request for information
  • Rich Cook (Thu Dec 17 2009 - 13:58:45 CST)
  • John Stone (Thu Dec 17 2009 - 13:29:52 CST)
• request for provide a script of rmsf
  • Sasthi Charan Mandal (Wed Aug 29 2018 - 11:45:47 CDT)
  • Sasthi Charan Mandal (Thu Aug 02 2018 - 00:17:46 CDT)
  • Ashar Malik (Wed Aug 01 2018 - 10:22:57 CDT)
  • Sasthi Charan Mandal (Wed Aug 01 2018 - 09:53:16 CDT)
  • Ashar Malik (Wed Aug 01 2018 - 03:39:39 CDT)
  • Sasthi Charan Mandal (Wed Aug 01 2018 - 03:17:04 CDT)
  • Ashar Malik (Tue Jul 31 2018 - 19:40:09 CDT)
  • Sasthi Charan Mandal (Tue Jul 31 2018 - 10:21:20 CDT)
  • Sasthi Charan Mandal (Mon Jul 30 2018 - 04:24:22 CDT)
• request help about hbond
  • hamid mosaddeghi (Mon Mar 07 2011 - 13:20:13 CST)
  • hamid mosaddeghi (Mon Mar 07 2011 - 09:06:20 CST)
• request to know about bonds in between carbon atoms in carbon nanotubes
  • safron saif (Fri Apr 29 2011 - 03:54:53 CDT)
• Required Assistance for VMD
  • John Stone (Sun Apr 18 2004 - 12:19:19 CDT)
  • zaheer qasmi (Sat Apr 17 2004 - 09:16:34 CDT)
• RES: Protein residue read as solvent
  • Arthur Pereira da Fonseca (Wed Aug 17 2022 - 10:21:48 CDT)
• Res: Res: webpdb load problem
  • tiago sobreira (Mon Apr 18 2011 - 10:00:13 CDT)
• RES: simple script question
  • Arthur Pereira da Fonseca (Sun Jun 12 2022 - 11:54:27 CDT)
• RES: uNABLE TO OPEN VMD ON WINDOWS 2K
  • John Stone (Thu Feb 01 2007 - 11:05:32 CST)
  • Caio Julio Martins Veloso (Thu Feb 01 2007 - 06:54:03 CST)
• RES: VMD license
  • Arthur Pereira da Fonseca (Fri Dec 17 2021 - 17:32:10 CST)
• Res: webpdb load problem
  • John Stone (Fri Apr 15 2011 - 15:51:38 CDT)
• ResdueType and hydrophobicity scale
  • Andrew Dalke (Wed Jul 16 2008 - 05:45:13 CDT)
  • John Stone (Wed Jul 16 2008 - 02:47:41 CDT)
  • Giovanni Bellesia (Wed Jul 16 2008 - 02:13:46 CDT)
  • John Stone (Wed Jul 16 2008 - 01:59:34 CDT)
  • Giovanni Bellesia (Wed Jul 02 2008 - 18:16:29 CDT)
• Research Position Openings
  • Mike Smith (Sun Feb 18 2007 - 03:45:19 CST)
• Research Programmer for VMD/NAMD at UIUC
  • João Ribeiro (Tue Mar 12 2019 - 13:20:10 CDT)
• Research Programmers Positions Available
  • João Ribeiro (Fri Aug 10 2018 - 13:30:28 CDT)
• reseting namd library and uploading new topology file
  • Joao Ribeiro (Fri Mar 06 2020 - 11:00:48 CST)
  • soodabeh ghaffari (Thu Mar 05 2020 - 09:33:28 CST)
• Resid and residue atomselect bug
  • John Stone (Thu May 21 2015 - 10:14:44 CDT)
  • Stefan Doerr (Thu May 21 2015 - 08:30:17 CDT)
  • Stefan Doerr (Thu May 21 2015 - 08:20:27 CDT)
  • Axel Kohlmeyer (Thu May 21 2015 - 08:09:00 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 09:00:12 CDT)
  • Axel Kohlmeyer (Thu Apr 02 2015 - 08:42:34 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 08:15:36 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 08:32:02 CDT)
  • Josh Vermaas (Thu Apr 02 2015 - 08:16:39 CDT)
  • Axel Kohlmeyer (Thu Apr 02 2015 - 08:20:34 CDT)
  • Axel Kohlmeyer (Thu Apr 02 2015 - 07:43:14 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 07:08:33 CDT)
  • Axel Kohlmeyer (Thu Apr 02 2015 - 06:54:55 CDT)
  • Stefan Doerr (Thu Apr 02 2015 - 03:41:16 CDT)
• resid color
  • John Stone (Wed Apr 03 2002 - 12:40:29 CST)
  • Peter VARNAI (Wed Apr 03 2002 - 12:00:09 CST)
• resid le 250
  • John Stone (Mon Mar 28 2005 - 13:08:57 CST)
  • Haibo Yu (Wed Mar 23 2005 - 16:22:15 CST)
• resid of water that is hydrogen bonded
  • Axel Kohlmeyer (Mon Aug 25 2008 - 14:56:41 CDT)
  • nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
• residence time
  • John Stone (Wed Mar 24 2004 - 16:01:07 CST)
  • Ioana Cozmuta (Tue Mar 23 2004 - 21:51:10 CST)
• Residence time calculation
  • angad sharma (Thu Nov 17 2022 - 23:21:43 CST)
• Residence time of ions
  • Daipayan Sarkar (Thu Nov 10 2022 - 08:02:17 CST)
  • angad sharma (Thu Nov 10 2022 - 00:32:40 CST)
• Residence Time Script (v2.)
  • MannyEful E (Sat Apr 02 2016 - 12:28:06 CDT)
  • John Stone (Thu Mar 31 2016 - 10:38:07 CDT)
  • MannyEful E (Wed Mar 30 2016 - 19:51:48 CDT)
• residency times continued
  • Magnus Andersson (Fri Feb 15 2013 - 07:12:04 CST)
• residue based CG model
  • Anton Arkhipov (Fri Jul 10 2009 - 10:47:00 CDT)
  • Xiang Yu (Fri Jul 10 2009 - 09:20:42 CDT)
• Residue highlighting in MD Traj
  • Nuno Loureiro Ferreira (Fri Sep 28 2007 - 03:45:32 CDT)
  • Nuno Loureiro Ferreira (Wed Sep 19 2007 - 05:05:01 CDT)
  • M kutty (Wed Sep 19 2007 - 03:15:09 CDT)
• residue index problem
  • John Stone (Wed Jun 24 2009 - 16:40:44 CDT)
  • Jianhui Tian (Wed Jun 24 2009 - 15:51:54 CDT)
• Residue label moves upon rendering
  • John Stone (Thu Mar 05 2015 - 15:25:54 CST)
  • James Lord (Wed Mar 04 2015 - 19:55:05 CST)
• residue labels in vmd
  • John Stone (Thu Mar 06 2003 - 10:05:37 CST)
  • Jim Caldwell (Wed Mar 05 2003 - 18:59:03 CST)
• residue list of within ? distance
  • John Stone (Thu Jul 06 2006 - 16:52:59 CDT)
  • Ting Wang (Thu Jul 06 2006 - 16:46:44 CDT)
• residue missed by psfgen
  • Peter Freddolino (Mon Aug 20 2007 - 16:48:00 CDT)
  • Daniel Kennedy (Mon Aug 20 2007 - 12:09:05 CDT)
• residue no. greater than 9999 in pdb files created with VMD
  • Vlad Cojocaru (Thu Jul 13 2006 - 03:57:28 CDT)
  • Axel Kohlmeyer (Wed Jul 12 2006 - 11:42:42 CDT)
  • JC Gumbart (Wed Jul 12 2006 - 11:24:34 CDT)
  • John Stone (Wed Jul 12 2006 - 11:16:21 CDT)
  • Vlad Cojocaru (Wed Jul 12 2006 - 10:56:16 CDT)
• Residue Number Assignment by VMD
  • John Stone (Fri May 28 2010 - 13:32:38 CDT)
  • Axel Kohlmeyer (Fri May 28 2010 - 08:24:45 CDT)
  • Sally Fisher (Fri May 28 2010 - 07:29:55 CDT)
• Residue Number Assignment by VMD: RESID vs RESIDUE
  • Thomas C. Bishop (Fri May 28 2010 - 10:47:05 CDT)
• residue numbering TCL versus PDB
  • Axel Kohlmeyer (Fri Jul 29 2005 - 02:13:59 CDT)
  • Axel Kohlmeyer (Wed Jul 27 2005 - 07:36:48 CDT)
  • ioana_at_pegasus.arc.nasa.gov (Tue Jul 26 2005 - 20:32:08 CDT)
• Residue numbers changing after addition of simulation boxes below and above membrane cell
  • Josh Vermaas (Mon Jun 21 2021 - 07:54:41 CDT)
  • Nagendra Prasad (Sun Jun 20 2021 - 05:10:31 CDT)
• Residue numbers in outfiles PDB/GRO
  • John Stone (Fri Apr 01 2016 - 13:42:27 CDT)
  • John Stone (Thu Mar 31 2016 - 14:49:49 CDT)
  • John Stone (Thu Mar 31 2016 - 11:03:04 CDT)
  • Norman Geist (Wed Mar 23 2016 - 06:19:22 CDT)
• Residue Ordering in Sequence Viewer/MultiSeq
  • Sally Fisher (Wed May 26 2010 - 10:15:20 CDT)
• Residue replacement question
  • fouchni_at_uni-osnabrueck.de (Wed Feb 20 2008 - 04:15:33 CST)
• Residue replacement question]
  • Axel Kohlmeyer (Sat Feb 23 2008 - 17:29:35 CST)
  • fouchni_at_uni-osnabrueck.de (Fri Feb 22 2008 - 04:20:04 CST)
• residue rotation within single pdb file
  • Justin Gullingsrud (Sun Jul 07 2002 - 11:21:13 CDT)
  • B. Bennion (Sun Jul 07 2002 - 02:27:32 CDT)
• residue selection
  • Peter Freddolino (Fri Oct 12 2007 - 14:24:18 CDT)
  • Giovanni Bellesia (Fri Oct 12 2007 - 14:28:29 CDT)
  • Peter Freddolino (Fri Oct 12 2007 - 14:27:49 CDT)
  • Giovanni Bellesia (Fri Oct 12 2007 - 14:19:32 CDT)
• residue selection (water molecule within 5 ang. to protein in simulation)
  • John Stone (Tue Oct 16 2007 - 10:57:29 CDT)
  • kinshuk_at_chem.iitb.ac.in (Mon Oct 15 2007 - 23:54:21 CDT)
  • Neelanjana Sengupta (Sun Oct 14 2007 - 08:05:40 CDT)
  • kinshuk_at_chem.iitb.ac.in (Sun Oct 14 2007 - 02:21:32 CDT)
• residue selection: conflict between resid and residue
  • Axel Kohlmeyer (Fri Sep 21 2007 - 17:08:32 CDT)
  • Nicolas Sapay (Fri Sep 21 2007 - 16:04:56 CDT)
  • John Stone (Fri Sep 21 2007 - 15:24:04 CDT)
  • Nicolas Sapay (Fri Sep 21 2007 - 15:14:23 CDT)
  • Axel Kohlmeyer (Fri Sep 21 2007 - 13:15:29 CDT)
  • Nicolas Sapay (Fri Sep 21 2007 - 13:22:45 CDT)
• residue within x of <geometric centre>
  • Yi Wang, PhD (Sun Jul 06 2014 - 17:58:04 CDT)
  • Josh Vermaas (Sun Jul 06 2014 - 16:02:34 CDT)
  • Gurunath Katagi (Fri Jul 04 2014 - 09:48:48 CDT)
• residue-residue distances and atom selection bug
  • Andrew Dalke (Tue Jun 10 1997 - 13:05:11 CDT)
• residue-residue interaction energy
  • John Stone (Tue Dec 08 2015 - 14:06:14 CST)
  • elena ermakova (Tue Dec 08 2015 - 02:48:04 CST)
• residue_rmsd.tcl
  • Irene Newhouse (Thu Jul 26 2007 - 16:29:55 CDT)
  • Irene Newhouse (Thu Jul 26 2007 - 16:17:46 CDT)
  • John Stone (Thu Jul 26 2007 - 16:20:50 CDT)
  • Irene Newhouse (Thu Jul 26 2007 - 12:37:51 CDT)
  • John Stone (Thu Jul 26 2007 - 12:42:11 CDT)
• Residues within a specified distance across all trajectories time steps
  • Maxim Belkin (Mon Apr 06 2015 - 15:49:59 CDT)
  • Josh Vermaas (Mon Apr 06 2015 - 15:49:34 CDT)
  • Aryan Vahedi (Mon Apr 06 2015 - 13:34:57 CDT)
  • John Stone (Mon Apr 06 2015 - 10:59:53 CDT)
  • Aryan Vahedi (Fri Apr 03 2015 - 11:24:56 CDT)
• Resize window from TCL
  • Ondrej Marsalek (Mon Sep 21 2009 - 12:52:02 CDT)
  • John Stone (Mon Sep 21 2009 - 12:48:08 CDT)
  • Axel Kohlmeyer (Mon Sep 21 2009 - 13:08:14 CDT)
  • Ondrej Marsalek (Mon Sep 21 2009 - 11:51:46 CDT)
• resizing display exits vmd
  • Michael Robinson (Sat Jul 25 2020 - 00:00:54 CDT)
  • John Stone (Fri Jul 24 2020 - 13:33:20 CDT)
  • Michael Robinson (Thu Jul 23 2020 - 21:56:31 CDT)
  • Miro Astore (Thu Jul 23 2020 - 19:11:24 CDT)
• Resname CHARMM to NAMD
  • Thierry Oscar Wambo (Tue Sep 23 2014 - 10:57:53 CDT)
  • Josh Vermaas (Tue Sep 23 2014 - 09:28:30 CDT)
  • Ashar Malik (Mon Sep 22 2014 - 23:50:14 CDT)
  • Thierry Oscar Wambo (Mon Sep 22 2014 - 22:58:32 CDT)
• resname X and pbwithin resname X excluding intramolecular
  • Bart Bruininks (Sat Jun 06 2020 - 14:47:30 CDT)
  • Josh Vermaas (Fri Jun 05 2020 - 10:34:36 CDT)
  • Bart Bruininks (Fri Jun 05 2020 - 08:14:43 CDT)
• resolution for previous message
  • sjcav_at_aros.net (Wed Jul 03 2002 - 05:30:00 CDT)
• Resolution of movie?
  • John Stone (Tue Mar 26 2002 - 18:00:20 CST)
  • Troy Wymore (Tue Mar 26 2002 - 17:02:43 CST)
• resolution screen in Linux
  • andrea spitaleri (Mon Apr 28 2008 - 02:54:15 CDT)
  • John Stone (Thu Apr 24 2008 - 08:46:50 CDT)
  • Axel Kohlmeyer (Thu Apr 24 2008 - 08:15:59 CDT)
  • andrea spitaleri (Thu Apr 24 2008 - 07:33:24 CDT)
• resolving side chain clashes
  • jayant_jacques (Thu Dec 13 2007 - 14:05:10 CST)
• Resonable visualisation of the molecules inside the periodic box ?
  • Marek Maly (Fri Apr 16 2010 - 09:59:50 CDT)
• Resp on VMD
  • SM Bargeen A Turzo (Fri Apr 27 2018 - 11:41:53 CDT)
  • JC Gumbart (Fri Apr 27 2018 - 11:30:06 CDT)
  • JC Gumbart (Mon Apr 23 2018 - 17:36:36 CDT)
  • Axel Kohlmeyer (Mon Apr 23 2018 - 16:27:52 CDT)
  • SM Bargeen A Turzo (Mon Apr 23 2018 - 15:46:20 CDT)
• RESP PATH
  • SM Bargeen A Turzo (Mon Apr 23 2018 - 12:49:56 CDT)
• RESP2.4 and FFTK
  • SM Bargeen A Turzo (Mon Apr 23 2018 - 14:22:38 CDT)
• Restart after press Finish in QwikMD simulation
  • João Ribeiro KS (Tue Mar 14 2017 - 07:35:06 CDT)
  • João Ribeiro KS (Tue Mar 14 2017 - 07:18:16 CDT)
  • jrhau lung (Tue Mar 14 2017 - 04:08:04 CDT)
• restart simulation with NAMD
  • Nuno R. L. Ferreira (Thu Feb 23 2006 - 05:02:23 CST)
  • lily jin (Wed Feb 22 2006 - 14:01:30 CST)
• Restarting a simulation
  • GAGANJYOT KAUR BAKSHI (Wed May 03 2023 - 06:29:22 CDT)
• Restarting a simulation $ Langevin
  • John Stone (Sat Sep 20 2008 - 02:20:34 CDT)
  • Anirban Ghosh (Fri Sep 19 2008 - 07:17:12 CDT)
• restarting calculations anytime within Equilibration and MD simulations steps in QwikMD
  • Sefcikova, Jana (Tue Apr 30 2024 - 17:41:39 CDT)
  • Giacomo Fiorin (Tue Apr 30 2024 - 16:09:48 CDT)
  • Sefcikova, Jana (Tue Apr 30 2024 - 16:05:52 CDT)
  • Giacomo Fiorin (Tue Apr 30 2024 - 14:42:21 CDT)
  • Sefcikova, Jana (Tue Apr 30 2024 - 12:58:34 CDT)
• Restrain a molecule in movie
  • Saikat Pal (Mon Jan 20 2020 - 08:56:30 CST)
  • Ashar Malik (Mon Jan 20 2020 - 09:42:10 CST)
• Restraining selected atoms with multimer
  • Michael Robinson (Mon Nov 16 2020 - 21:29:22 CST)
  • Francesco Pietra (Wed Nov 04 2020 - 04:36:11 CST)
• Restraints on coarse grained model
  • Francesco Pietra (Wed Dec 09 2009 - 12:49:28 CST)
  • BIN ZHANG (Wed Dec 09 2009 - 13:01:58 CST)
  • BIN ZHANG (Wed Dec 09 2009 - 12:07:37 CST)
  • Anton Arkhipov (Wed Dec 09 2009 - 10:58:56 CST)
  • Francesco Pietra (Tue Dec 08 2009 - 13:23:59 CST)
• ResType Color
  • Seiichiro Tanizaki (Thu Mar 03 2005 - 14:49:39 CST)
• results analysis by VMD.
  • maria khan (Sat Jan 14 2017 - 05:11:04 CST)
• Resuming changes in MOLEFACTURE
  • Francesco Pietra (Tue Aug 11 2015 - 03:54:19 CDT)
  • Francesco Pietra (Mon Aug 10 2015 - 12:25:43 CDT)
• Retrieving an atom and its coordinates
  • Roman Petrenko (Sat Feb 13 2010 - 20:14:34 CST)
  • Axel Kohlmeyer (Sat Feb 13 2010 - 17:20:59 CST)
  • Marc Charendoff (Sat Feb 13 2010 - 16:19:50 CST)
  • Schreiner Eduard (Sat Feb 13 2010 - 16:35:39 CST)
• retrieving atom indexes from measure contacts
  • Leonardo Trabuco (Tue Jan 05 2010 - 20:16:54 CST)
  • Sunita Patel (Tue Jan 05 2010 - 19:56:22 CST)
• Retrieving Cremer-Pople parameters
  • Payne, Christy (Tue Jul 12 2011 - 10:31:26 CDT)
  • Payne, Christy (Tue Jul 12 2011 - 10:32:24 CDT)
  • John Stone (Tue Jul 12 2011 - 09:13:36 CDT)
  • Axel Kohlmeyer (Tue Jul 12 2011 - 09:03:56 CDT)
  • Mr Bernard Ramos (Tue Jul 12 2011 - 07:40:05 CDT)
• retrieving the center of mass for each frame of trajectory
  • John Stone (Wed Oct 18 2006 - 12:58:30 CDT)
  • Vlad Cojocaru (Wed Oct 18 2006 - 12:35:14 CDT)
• Retrieving the Cremer-Pople parameters
  • Nicolas Sapay (Mon Jun 07 2010 - 04:05:01 CDT)
  • John Stone (Fri Jun 04 2010 - 17:03:59 CDT)
  • Nicolas Sapay (Fri Jun 04 2010 - 03:46:30 CDT)
• Return value of a vector
  • Stephanie Held (Mon Sep 28 2009 - 09:57:08 CDT)
  • Axel Kohlmeyer (Mon Sep 28 2009 - 09:35:25 CDT)
  • Stephanie Held (Mon Sep 28 2009 - 08:39:27 CDT)
• Reusing the psf file
  • Axel Kohlmeyer (Sat Jun 29 2013 - 02:06:10 CDT)
  • Peterson J (Fri Jun 28 2013 - 22:06:56 CDT)
• Reverse Mapping of RBCG Model
  • Peter Freddolino (Thu Mar 31 2011 - 21:46:14 CDT)
  • Peter Freddolino (Thu Mar 31 2011 - 21:44:25 CDT)
  • Vlad Cojocaru (Thu Mar 31 2011 - 12:39:17 CDT)
  • Peter Freddolino (Thu Mar 31 2011 - 11:10:35 CDT)
  • Sibel Cakan (Wed Mar 30 2011 - 07:39:51 CDT)
• reverting coarse-grained system to all-atom system
  • Rabeta Yeasmin (Mon Apr 16 2018 - 10:43:25 CDT)
  • Peter Freddolino (Sun Apr 15 2018 - 20:14:26 CDT)
  • Rabeta Yeasmin (Sun Apr 15 2018 - 18:57:10 CDT)
• revised VMD tutorial
  • Christoph Weber (Fri Jul 14 2006 - 19:03:44 CDT)
• RE : plot residues without hydrogen atoms
  • ABEL Stephane 175950 (Tue May 20 2008 - 11:11:46 CDT)
• RE : Plot the value of the current frame in the Progress Bar for elapsed Time
  • ABEL Stephane 175950 (Thu Dec 02 2010 - 12:15:22 CST)
• RE : use gelato render with VMD 1.8.7 for movie
  • ABEL Stephane 175950 (Fri Dec 03 2010 - 12:18:26 CST)
• RE Q?= use gelato render with VMD 1.8.7 for movie
  • John Stone (Fri Dec 03 2010 - 14:17:31 CST)
• RE£º hydrogen bond cutoff value
  • Axel Kohlmeyer (Tue Dec 03 2013 - 01:48:13 CST)
• RE： a script to count the frames in which some water molecules interact with selected protein atoms
  • sunyeping (Tue Dec 30 2014 - 19:13:35 CST)
• Re： display water
  • Josh Vermaas (Mon Aug 04 2014 - 08:58:10 CDT)
  • sunyeping (Sun Aug 03 2014 - 20:41:20 CDT)
• RE： hydrogen bond cutoff value
  • Boris Steipe (Tue Dec 03 2013 - 08:31:52 CST)
  • chandrakala gowda (Tue Dec 03 2013 - 07:40:29 CST)
  • sunyeping (Tue Dec 03 2013 - 06:57:20 CST)
  • sunyeping (Tue Dec 03 2013 - 01:45:26 CST)
• RE： proper enviroment for the VMD namdenergy plugin
  • Josh Vermaas (Sun May 18 2014 - 16:11:45 CDT)
  • sunyeping (Sun May 18 2014 - 12:00:10 CDT)
• RE： removing water from dcd file
  • sunyeping (Tue Mar 18 2014 - 08:13:31 CDT)
• RE： RE： proper enviroment for the VMD namdenergy plugin
  • sunyeping (Mon May 19 2014 - 16:40:05 CDT)
  • sunyeping (Mon May 19 2014 - 16:39:49 CDT)
• RE： select all residues in a molecule
  • sunyeping (Mon Jun 30 2014 - 02:10:45 CDT)
• RE： visualize gromacs trajectory in vmd
  • sunyeping (Mon Apr 07 2014 - 06:52:55 CDT)
  • sunyeping (Wed Apr 02 2014 - 10:40:07 CDT)
  • Felipe Merino (Wed Apr 02 2014 - 10:47:30 CDT)
• re：答å¤�： c_top2psf.pl
  • sunyeping (Sun Aug 31 2014 - 10:33:48 CDT)
• Rgarding the output for dx file of occupancy(VolMap)
  • Sheena Singh (Tue Sep 19 2017 - 10:27:37 CDT)
  • Giacomo Fiorin (Tue Sep 19 2017 - 09:47:35 CDT)
  • Axel Kohlmeyer (Mon Sep 18 2017 - 14:17:22 CDT)
  • Brian Radak (Mon Sep 18 2017 - 12:35:38 CDT)
  • Sheena Singh (Mon Sep 18 2017 - 10:38:19 CDT)
  • Giacomo Fiorin (Mon Sep 18 2017 - 11:20:04 CDT)
• rgb to mpg
  • John Stone (Thu Aug 14 2003 - 22:01:08 CDT)
  • Ioana Cozmuta (Mon Aug 11 2003 - 13:31:44 CDT)
  • John Stone (Mon Aug 11 2003 - 10:50:42 CDT)
  • Ioana Cozmuta (Fri Aug 08 2003 - 18:56:30 CDT)
  • John Stone (Fri Aug 08 2003 - 18:34:46 CDT)
  • Ioana Cozmuta (Fri Aug 08 2003 - 18:20:49 CDT)
• RGB values...
  • John Stone (Sat Jul 03 2010 - 09:12:35 CDT)
  • Robert Brunner (Fri Jul 02 2010 - 11:07:06 CDT)
  • Luis Guillermo Cota Preciado (Thu Jul 01 2010 - 18:10:10 CDT)
• rgyr calculation problem
  • Jérôme Hénin (Fri Nov 19 2010 - 15:08:10 CST)
  • Axel Kohlmeyer (Fri Nov 19 2010 - 13:35:45 CST)
  • Branko (Fri Nov 19 2010 - 12:44:50 CST)
  • Branko (Wed Nov 10 2010 - 13:04:31 CST)
  • Axel Kohlmeyer (Wed Nov 10 2010 - 12:40:40 CST)
  • Branko (Wed Nov 10 2010 - 11:50:30 CST)
  • Axel Kohlmeyer (Wed Nov 10 2010 - 11:12:06 CST)
  • Branko (Wed Nov 10 2010 - 11:06:22 CST)
  • Axel Kohlmeyer (Fri Nov 05 2010 - 17:09:31 CDT)
  • Branko (Fri Nov 05 2010 - 16:21:05 CDT)
• rgyr from big DCD
  • PaweÅ‚ KÄ™dzierski (Tue Jan 08 2013 - 03:29:58 CST)
  • lloyd riggs (Mon Jan 07 2013 - 15:27:37 CST)
  • Steven Neumann (Mon Jan 07 2013 - 05:49:58 CST)
• ribbon on different thickness
  • John Stone (Fri Jun 22 2018 - 03:25:25 CDT)
  • Graham Jackson (Wed Jun 13 2018 - 10:29:45 CDT)
• ribbon rendering errors
  • Rebecca Taylor (Mon Jan 12 2015 - 14:47:28 CST)
  • John Stone (Mon Jan 12 2015 - 11:42:04 CST)
  • Josh Vermaas (Tue Dec 30 2014 - 20:07:48 CST)
  • Rebecca Taylor (Mon Dec 29 2014 - 11:51:38 CST)
  • Rebecca Taylor (Mon Dec 29 2014 - 11:08:21 CST)
  • Josh Vermaas (Fri Dec 26 2014 - 07:20:29 CST)
  • Rebecca Taylor (Thu Dec 25 2014 - 23:15:15 CST)
• ribbon representation
  • John Stone (Fri Oct 17 2003 - 18:14:17 CDT)
  • Darui Xu (Fri Oct 17 2003 - 11:28:31 CDT)
• ribbon representation :: VRML
  • John Stone (Tue Oct 21 2003 - 15:43:26 CDT)
• ribbons representation for RNA in vmd 1.8.5
  • John Stone (Mon Nov 06 2006 - 17:26:32 CST)
  • John Stone (Wed Sep 20 2006 - 13:56:33 CDT)
  • Vlad Cojocaru (Wed Sep 20 2006 - 09:06:43 CDT)
• right alignment for numbers in color bar
  • John Stone (Sat Aug 12 2006 - 03:42:53 CDT)
  • John Stone (Sat Aug 12 2006 - 00:15:58 CDT)
  • John Stone (Fri Aug 11 2006 - 23:15:27 CDT)
  • Yongcheng Zhou (Fri Aug 11 2006 - 18:38:38 CDT)
• ring-like structure formation with distance restraints
  • Vermaas, Joshua (Wed Dec 19 2018 - 17:27:58 CST)
  • Vermaas, Joshua (Wed Dec 19 2018 - 12:53:31 CST)
  • Prabir Khatua (Tue Dec 18 2018 - 21:32:48 CST)
• rlwrap bug in Ubuntu
  • Axel Kohlmeyer (Sun Mar 15 2009 - 15:14:45 CDT)
  • John Stone (Sun Mar 15 2009 - 14:20:26 CDT)
  • Axel Kohlmeyer (Sun Mar 15 2009 - 09:32:49 CDT)
  • John Stone (Sun Mar 15 2009 - 09:32:06 CDT)
  • Thomas Evangelidis (Sun Mar 15 2009 - 01:11:30 CDT)
• rlwrap problem
  • Laura Joana (Wed Mar 23 2016 - 12:16:57 CDT)
  • Josh Vermaas (Mon Mar 21 2016 - 09:08:04 CDT)
  • Laura Joana (Mon Mar 21 2016 - 08:44:43 CDT)
  • Josh Vermaas (Fri Mar 18 2016 - 13:42:51 CDT)
  • Laura Joana (Fri Mar 18 2016 - 10:37:10 CDT)
• rlwrap problem on
  • Cun Zhang (Thu Nov 24 2011 - 07:07:11 CST)
  • Pablo De Biase (Tue Nov 22 2011 - 13:38:58 CST)
  • John Stone (Fri Nov 11 2011 - 09:26:24 CST)
  • sajad falsafi (Wed Nov 09 2011 - 02:53:43 CST)
  • Frank Barry (Tue Nov 08 2011 - 14:34:21 CST)
  • Gianluca Interlandi (Tue Nov 01 2011 - 14:15:49 CDT)
  • Gianluca Interlandi (Tue Nov 01 2011 - 14:14:51 CDT)
  • Joshua A. Anderson (Tue Nov 01 2011 - 13:46:10 CDT)
  • Frank Barry (Tue Nov 01 2011 - 10:50:26 CDT)
• rlwrap/ffTK issues with vmd 1.9.2
  • Josh Vermaas (Wed Aug 12 2015 - 08:54:41 CDT)
  • Francesco Pietra (Wed Aug 12 2015 - 02:49:01 CDT)
• rlwrap: Command not found.
  • John Stone (Wed Sep 06 2017 - 14:37:21 CDT)
  • John Stone (Tue Sep 05 2017 - 13:30:52 CDT)
  • John Stone (Tue Sep 05 2017 - 13:27:31 CDT)
  • Bennion, Brian (Tue Sep 05 2017 - 10:31:58 CDT)
  • Saikat Pal (Sat Sep 02 2017 - 01:07:17 CDT)
• rlwrap: Command not found. /usr/local/lib/vmd/vmd_LINUX: Command not found.
  • Axel Kohlmeyer (Fri Dec 09 2016 - 13:51:56 CST)
  • John Stone (Fri Dec 09 2016 - 13:46:00 CST)
  • Axel Kohlmeyer (Fri Dec 09 2016 - 13:50:14 CST)
  • Atila Petrosian (Fri Dec 09 2016 - 13:29:11 CST)
  • John Stone (Fri Dec 09 2016 - 10:10:53 CST)
  • Atila Petrosian (Fri Dec 09 2016 - 01:55:18 CST)
  • Atila Petrosian (Fri Dec 09 2016 - 01:49:42 CST)
• rlwrap: No match.
  • Daniel Strahs (Fri Aug 01 2014 - 16:16:13 CDT)
  • Axel Kohlmeyer (Fri Aug 01 2014 - 16:23:39 CDT)
  • Axel Kohlmeyer (Fri Aug 01 2014 - 15:51:43 CDT)
  • Daniel Strahs (Fri Aug 01 2014 - 15:34:01 CDT)
  • Axel Kohlmeyer (Mon Mar 03 2014 - 08:32:39 CST)
  • Subbarao Kanchi (Mon Mar 03 2014 - 08:24:55 CST)
  • Axel Kohlmeyer (Mon Mar 03 2014 - 08:15:26 CST)
  • Subbarao Kanchi (Mon Mar 03 2014 - 07:34:17 CST)
• rms alignment in VMD
  • John Stone (Mon Feb 09 2015 - 15:44:04 CST)
  • Gianluca Interlandi (Fri Jan 30 2015 - 14:27:10 CST)
• rms and align strucs
  • Peter Freddolino (Wed Apr 19 2006 - 12:02:46 CDT)
  • andrea spitaleri (Wed Apr 19 2006 - 06:05:50 CDT)
• rms dumping in a file
  • John Stone (Mon Oct 28 2002 - 10:34:44 CST)
  • Vlad Cojocaru (Mon Oct 28 2002 - 05:16:41 CST)
• RMS fits
  • Dean Johnson (Fri Oct 18 2002 - 23:04:11 CDT)
  • Tara Sprules (Wed Oct 16 2002 - 17:34:09 CDT)
• rms fitting problem
  • Peter Freddolino (Wed May 02 2007 - 20:21:47 CDT)
  • Myunggi Yi (Wed May 02 2007 - 16:34:04 CDT)
• Rmsd
  • John Stone (Sat Nov 23 2013 - 00:36:08 CST)
  • Subbusinger N (Thu Nov 07 2013 - 00:25:37 CST)
  • Alexander Balaeff (Sun Mar 18 2012 - 12:59:28 CDT)
  • John Stone (Sun Mar 18 2012 - 12:26:39 CDT)
  • George Tzotzos (Sun Mar 18 2012 - 06:47:36 CDT)
  • Eduard Schreiner (Tue Nov 02 2010 - 13:01:09 CDT)
  • divya nayar (Tue Nov 02 2010 - 11:53:26 CDT)
  • John Stone (Tue Aug 19 2008 - 01:02:57 CDT)
  • Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
  • Anuradha Mittal (Wed Apr 12 2006 - 09:24:45 CDT)
  • Peter Freddolino (Tue Apr 11 2006 - 13:57:58 CDT)
  • Anuradha Mittal (Tue Apr 11 2006 - 13:47:06 CDT)
  • Luis Gracia (Wed Apr 06 2005 - 16:02:58 CDT)
  • John Stone (Tue Apr 05 2005 - 17:17:10 CDT)
  • Anuradha Mittal (Tue Apr 05 2005 - 11:24:28 CDT)
• RMSD (Re-send of James Cavenaugh's bounced mail)
  • John Stone (Tue Jun 25 2002 - 10:50:33 CDT)
• rmsd and angle between the two domains
  • Luis Rosales (Tue Apr 12 2005 - 23:51:55 CDT)
  • venkataraman kabaleeswaran (Tue Apr 12 2005 - 12:31:42 CDT)
• RMSD and PSF generation
  • Hurt, Darrell (NIH/NIAID) [E] (Tue Dec 21 2010 - 11:18:00 CST)
  • Bharat Kumar (Mon Dec 20 2010 - 21:29:48 CST)
• RMSD and RMSF of ligand Only
  • Ashar Malik (Thu Oct 28 2021 - 06:28:27 CDT)
  • Mi Yang (Thu Oct 28 2021 - 04:48:37 CDT)
• RMSD between two structures without the same number of atoms
  • Axel Kohlmeyer (Fri Apr 18 2008 - 09:20:29 CDT)
  • Aurelie.DeLuca_at_sanofi-aventis.com (Fri Apr 18 2008 - 08:08:39 CDT)
• RMSD calc
  • Axel Kohlmeyer (Thu Mar 20 2008 - 05:37:31 CDT)
  • SENTHIL KUMAR (Thu Mar 20 2008 - 01:11:02 CDT)
• RMSD calculation
  • Luis Gracia (Mon Apr 25 2005 - 19:29:21 CDT)
  • Simon Whitehead (Mon Apr 25 2005 - 06:17:35 CDT)
• rmsd calculation and alignment
  • lug2002_at_med.cornell.edu (Tue Sep 28 2004 - 11:27:10 CDT)
  • mashaojie163 (Tue Sep 28 2004 - 10:46:15 CDT)
  • bora erdemli (Tue Sep 28 2004 - 07:28:15 CDT)
• rmsd calculation and plot
  • sarah k (Tue Nov 10 2009 - 23:20:06 CST)
  • John Stone (Tue Nov 10 2009 - 16:25:00 CST)
  • sarah k (Tue Nov 03 2009 - 23:18:29 CST)
• rmsd calculation for RNA
  • Moumita Maiti (Fri Jun 08 2007 - 11:48:58 CDT)
• RMSD calculation/fit doesn't work?
  • Timm Essigke (Tue Aug 15 2000 - 07:47:51 CDT)
  • John Stone (Mon Aug 14 2000 - 18:58:34 CDT)
  • Timm Essigke (Thu Aug 03 2000 - 13:17:18 CDT)
• RMSD Calculator
  • Luis Gracia (Thu Jun 08 2006 - 12:56:02 CDT)
  • Tamal Banerjee (Thu Jun 08 2006 - 08:37:43 CDT)
• RMSD calculator extension
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:48:38 CDT)
  • George Tzotzos (Tue Aug 23 2011 - 08:59:19 CDT)
• rmsd computation in text mode with a reference pdb
  • Leonardo Trabuco (Mon Mar 02 2009 - 01:42:38 CST)
  • Monika Sharma (Mon Mar 02 2009 - 01:18:30 CST)
• rmsd crashes vmd
  • John Stone (Sat Nov 06 1999 - 00:17:28 CST)
  • Kevin Sanbonmatsu (Thu Nov 04 1999 - 21:02:26 CST)
• rmsd crashes vmd 1.3
  • John Stone (Tue Nov 09 1999 - 21:59:58 CST)
• rmsd different from rmsd implemented in VMD
  • Thomas C. Bishop (Thu Feb 14 2008 - 08:19:08 CST)
  • JC Gumbart (Wed Feb 13 2008 - 10:58:13 CST)
  • Jorgen Simonsen (Wed Feb 13 2008 - 10:18:19 CST)
• RMSD error "Matrix: Warning: no convergence"
  • Maria Sanchez (Thu Nov 06 2008 - 09:16:20 CST)
• rmsd fitting
  • Luis Gracia (Tue Sep 12 2006 - 02:03:30 CDT)
  • Myunggi Yi (Mon Sep 11 2006 - 20:30:13 CDT)
• RMSD fitting for molecules adsorbed to surfaces
  • Bob Johnson (Thu May 10 2007 - 16:12:09 CDT)
• RMSD for individual residue for a tetarmer
  • gurunath katagi (Wed Dec 09 2009 - 04:41:11 CST)
  • John Stone (Wed Dec 09 2009 - 00:25:01 CST)
  • gurunath katagi (Fri Dec 04 2009 - 00:20:03 CST)
• RMSD for non-continous residues
  • Srinivasan Madabushi (Fri Dec 17 2004 - 18:24:44 CST)
• RMSD for non-pdb file.
  • John Stone (Tue Nov 26 2013 - 11:11:15 CST)
  • Dawid das (Tue Nov 26 2013 - 08:07:48 CST)
• RMSD for specific residue
  • John Stone (Fri Sep 07 2018 - 14:28:17 CDT)
  • abhik.ghosh_at_bose.res.in (Wed Sep 05 2018 - 09:42:29 CDT)
• rmsd from VMD
  • Tim Isgro (Mon Nov 24 2003 - 15:46:21 CST)
  • Madhuri Agashe (Sun Nov 23 2003 - 13:34:32 CST)
• RMSD heatmapper -plugin
  • John Stone (Mon Sep 19 2011 - 14:03:52 CDT)
  • Axel Kohlmeyer (Mon Sep 19 2011 - 12:49:40 CDT)
  • Anssi Nurminen (Mon Sep 19 2011 - 12:03:51 CDT)
• rmsd matrix
  • Andres Morales N (Thu Sep 03 2009 - 15:00:30 CDT)
  • Andres Morales N (Thu Sep 03 2009 - 07:45:06 CDT)
  • John Stone (Tue Feb 03 2009 - 10:08:00 CST)
  • Andres Morales N (Tue Feb 03 2009 - 10:01:28 CST)
  • Wei Huang (Mon Feb 02 2009 - 11:08:40 CST)
  • Andres Morales N (Mon Feb 02 2009 - 10:59:50 CST)
• RMSD of a protein shell, from the NAMD traj
  • John Stone (Sun Apr 26 2009 - 23:59:51 CDT)
  • priyodorshi satpati (Sun Apr 12 2009 - 11:02:13 CDT)
• RMSD of different molecules
  • Leonardo Trabuco (Fri Jul 06 2007 - 10:10:10 CDT)
  • Peter Freddolino (Fri Jul 06 2007 - 01:50:49 CDT)
  • hori koshii (Thu Jul 05 2007 - 20:50:56 CDT)
• RMSD of dihedrals
  • Luis Gracia (Fri Sep 30 2005 - 15:07:22 CDT)
  • Charles McCallum (Fri Sep 30 2005 - 09:14:55 CDT)
  • Charles McCallum (Thu Sep 29 2005 - 15:58:07 CDT)
• RMSD of identical pdbs not zero
  • Robin Bush (Wed Sep 14 2005 - 07:50:56 CDT)
  • Dan Wright (Tue Sep 13 2005 - 09:30:02 CDT)
  • Robin Bush (Fri Sep 09 2005 - 12:57:24 CDT)
• RMSD of lipid molecules
  • Giacomo Fiorin (Fri Apr 27 2018 - 12:41:46 CDT)
  • Sadegh Faramarzi Ganjabad (Fri Apr 27 2018 - 12:25:06 CDT)
  • Ashar Malik (Fri Apr 27 2018 - 12:31:57 CDT)
  • Ashar Malik (Fri Apr 27 2018 - 12:23:12 CDT)
  • Sadegh Faramarzi Ganjabad (Fri Apr 27 2018 - 11:38:34 CDT)
  • Udaya Dahal (Fri Apr 27 2018 - 09:21:39 CDT)
  • Brian Radak (Fri Apr 27 2018 - 08:59:34 CDT)
  • Giacomo Fiorin (Fri Apr 27 2018 - 07:01:36 CDT)
  • Sadegh Faramarzi Ganjabad (Thu Apr 26 2018 - 23:30:21 CDT)
• RMSD of not fitted region
  • John Stone (Tue Jun 13 2006 - 11:17:07 CDT)
  • Ting Wang (Mon Jun 12 2006 - 19:24:02 CDT)
• rmsd option in timeline
  • John Stone (Fri Jun 11 2004 - 09:20:50 CDT)
  • Marta Murcia (Thu Jun 10 2004 - 12:19:54 CDT)
• RMSD or RMSF value
  • Anthony Cruz (Tue Dec 20 2005 - 13:17:32 CST)
• rmsd per residue
  • Alberto Sergio Garay (Tue Jul 01 2008 - 05:36:46 CDT)
  • Eric H. Lee (Mon Jun 30 2008 - 14:42:18 CDT)
  • Michal Kolinski (Mon Jun 30 2008 - 10:19:40 CDT)
• RMSD per residue of docked molecule
  • Evandro Semighini (Wed Nov 04 2015 - 07:08:34 CST)
• RMSD per residue vs RMSF
  • John Stone (Tue Jan 07 2020 - 14:34:51 CST)
  • Ashraya Ravikumar (Wed Dec 18 2019 - 12:34:19 CST)
• RMSD pluging error
  • Francesco Pietra (Mon Dec 30 2019 - 10:16:46 CST)
• rmsd problem
  • John Stone (Tue Aug 31 2004 - 15:11:47 CDT)
  • bora erdemli (Thu Aug 26 2004 - 14:10:05 CDT)
  • John Stone (Mon Aug 19 2002 - 11:42:08 CDT)
  • John Stone (Wed Aug 14 2002 - 11:35:17 CDT)
  • Vlad Cojocaru (Wed Aug 14 2002 - 10:46:48 CDT)
• RMSD problem on 1.8.4a22 (Linux OpenGL)
  • Stéphane Teletchéa (Thu Dec 15 2005 - 11:59:52 CST)
  • Dow Hurst DPHURST (Thu Dec 15 2005 - 09:15:09 CST)
  • Stéphane Teletchéa (Thu Dec 15 2005 - 03:54:08 CST)
  • John Stone (Wed Dec 14 2005 - 12:48:00 CST)
  • Stéphane Teletchéa (Wed Dec 14 2005 - 06:05:11 CST)
• rmsd problem,script and version
  • bora erdemli (Fri Sep 03 2004 - 00:23:42 CDT)
• RMSD Question
  • Ashar Malik (Fri May 04 2018 - 19:07:17 CDT)
  • Vermaas, Joshua (Fri May 04 2018 - 18:46:41 CDT)
  • McGuire, Kelly (Fri May 04 2018 - 17:47:31 CDT)
  • Germain Salvato Vallverdu (Mon Nov 29 2010 - 02:56:05 CST)
  • snoze pa (Sun Nov 28 2010 - 11:08:25 CST)
  • L. Michel Espinoza-Fonseca (Wed Aug 17 2005 - 06:44:24 CDT)
  • Luis Gracia (Tue Aug 16 2005 - 20:20:00 CDT)
  • Giovanni Bellesia (Wed Aug 17 2005 - 06:04:38 CDT)
  • Jerry Parks (Tue Aug 16 2005 - 17:08:59 CDT)
• RMSD SCRIPT
  • John Stone (Tue Aug 19 2008 - 01:01:07 CDT)
  • Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
• Rmsd script with arguments
  • Mustafa Tekpinar (Wed Feb 01 2012 - 13:38:34 CST)
  • Axel Kohlmeyer (Tue Jan 31 2012 - 15:55:06 CST)
  • Mustafa Tekpinar (Tue Jan 31 2012 - 13:48:40 CST)
• RMSD Tool failes with MOL ID > 999
  • Bjoern Olausson (Tue Nov 15 2011 - 02:38:34 CST)
  • John Stone (Fri Nov 11 2011 - 09:48:57 CST)
  • Bjoern Olausson (Fri Nov 11 2011 - 05:52:11 CST)
• RMSD trajectory tool
  • Parisa Akhski (Fri Aug 27 2010 - 15:22:03 CDT)
  • John Stone (Fri Aug 27 2010 - 14:32:05 CDT)
  • Parisa Akhski (Fri Aug 27 2010 - 13:06:40 CDT)
  • Thomas C Bishop (Wed Jun 02 2010 - 09:24:13 CDT)
  • Axel Kohlmeyer (Tue Jun 01 2010 - 22:02:36 CDT)
  • Philip Peartree (Tue Jun 01 2010 - 20:33:54 CDT)
  • Axel Kohlmeyer (Thu Mar 06 2008 - 07:48:05 CST)
  • joy tehrani (Thu Mar 06 2008 - 06:45:35 CST)
  • John Stone (Wed Oct 17 2007 - 21:56:39 CDT)
  • Zhaochuan Shen (Wed Oct 10 2007 - 13:09:22 CDT)
• rmsd trajectory tool question
  • Joseph Bylund (Tue Apr 20 2010 - 13:23:07 CDT)
• RMSD trajectory tools
  • Axel Kohlmeyer (Fri Feb 12 2010 - 07:20:42 CST)
  • Asfa Ali (Fri Feb 12 2010 - 06:16:22 CST)
• RMSD vs RMSF
  • Francesco Oteri (Thu Oct 06 2011 - 15:37:05 CDT)
  • Rabab Toubar (Thu Oct 06 2011 - 14:22:09 CDT)
• rmsd with 2 different structures using serial numbers
  • JC Gumbart (Wed Dec 22 2010 - 18:07:46 CST)
  • Lisa Perez (Wed Dec 22 2010 - 11:43:28 CST)
  • JC Gumbart (Tue Dec 21 2010 - 21:40:43 CST)
  • Lisa Perez (Tue Dec 21 2010 - 14:38:48 CST)
  • Lisa Perez (Tue Dec 21 2010 - 13:30:33 CST)
• RMSD with protein ligand
  • Luis Gracia (Thu Jan 17 2008 - 14:45:04 CST)
  • Luis Gracia (Thu Jan 17 2008 - 10:26:44 CST)
  • Francesco Pietra (Thu Jan 17 2008 - 11:11:35 CST)
  • Francesco Pietra (Thu Jan 17 2008 - 00:49:37 CST)
• rmsd-fullthrottle.tcl problem
  • snoze pa (Thu Mar 30 2006 - 18:27:08 CST)
  • Marcos Sotomayor (Wed Mar 29 2006 - 20:43:18 CST)
  • Turman, Cheri M (Wed Mar 29 2006 - 20:25:40 CST)
  • Marcos Sotomayor (Wed Mar 29 2006 - 19:49:32 CST)
  • Turman, Cheri M (Wed Mar 29 2006 - 19:34:29 CST)
• RMSD-gaps
  • Karne, Sai Harish Babu (Mon Apr 20 2009 - 21:04:53 CDT)
  • Daniel Gaston (Mon Apr 20 2009 - 18:57:33 CDT)
  • Karne, Sai Harish Babu (Mon Apr 20 2009 - 17:09:51 CDT)
• rmsdtt
  • Luis Gracia (Fri Apr 01 2005 - 13:42:48 CST)
  • Luis Gracia (Fri Apr 01 2005 - 12:53:45 CST)
  • Wen Li (Fri Apr 01 2005 - 13:23:07 CST)
  • Wen Li (Fri Apr 01 2005 - 11:15:08 CST)
• rmsdtt 'batch mode'
  • Giacomo Fiorin (Tue Mar 24 2020 - 13:19:16 CDT)
  • Giacomo Fiorin (Tue Mar 24 2020 - 09:04:25 CDT)
  • Philippe Bopp (Tue Mar 24 2020 - 08:14:22 CDT)
• RMSDTT plugin
  • Luis Gracia (Tue Aug 24 2004 - 17:21:35 CDT)
• rmsdtt, itrajcomp and other plugins open sourced in github
  • Tristan Croll (Tue Jun 17 2014 - 01:17:05 CDT)
  • Francesco Pietra (Tue Jun 17 2014 - 00:26:45 CDT)
  • Luis Gracia (Mon Jun 16 2014 - 09:13:22 CDT)
• rmsf
  • Axel Kohlmeyer (Fri Aug 12 2011 - 03:52:10 CDT)
  • Nima Nouri (Fri Aug 12 2011 - 02:20:23 CDT)
  • hamze rahimi (Fri Aug 12 2011 - 01:32:44 CDT)
  • John Stone (Fri May 22 2009 - 10:57:39 CDT)
  • Maria Sanchez (Wed May 20 2009 - 23:14:17 CDT)
  • Axel Kohlmeyer (Tue Sep 19 2006 - 11:07:26 CDT)
  • andrea spitaleri (Tue Sep 19 2006 - 10:40:15 CDT)
  • Samuel Flores (Thu May 25 2006 - 20:02:44 CDT)
  • John Stone (Thu May 25 2006 - 14:54:21 CDT)
  • Leyla Celik (Wed May 24 2006 - 06:07:55 CDT)
• RMSF ?
  • Brian Bennion (Wed Jun 21 2006 - 10:10:08 CDT)
  • John Stone (Tue Jun 20 2006 - 16:13:57 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Tue Jun 20 2006 - 15:33:32 CDT)
• RMSF and bigdcd
  • John Stone (Fri May 25 2012 - 14:34:03 CDT)
  • Axel Kohlmeyer (Tue May 22 2012 - 18:53:22 CDT)
  • John Stone (Tue May 22 2012 - 18:02:31 CDT)
  • Raul Araya (Mon May 21 2012 - 09:39:45 CDT)
• rmsf calculation
  • Stefano Guglielmo (Fri Jun 03 2016 - 03:01:50 CDT)
  • JC Gumbart (Thu Oct 06 2005 - 14:51:53 CDT)
  • Michel Espinoza-Fonseca (Thu Oct 06 2005 - 08:23:00 CDT)
  • Wei Chen (Wed May 04 2005 - 10:18:10 CDT)
  • Michel Espinoza-Fonseca (Tue May 03 2005 - 15:58:43 CDT)
• RMSF calculation question:
  • Parminder Mankoo (Sat Jun 30 2007 - 22:06:43 CDT)
  • Leonardo Trabuco (Sat Jun 30 2007 - 20:14:56 CDT)
  • Parminder Mankoo (Sat Jun 30 2007 - 19:09:18 CDT)
• RMSF calculation with reference structure update
  • Vermaas, Joshua (Thu Feb 02 2017 - 11:03:32 CST)
  • Dmitry Suplatov (Thu Feb 02 2017 - 05:59:35 CST)
  • Dmitry Suplatov (Tue Jan 31 2017 - 11:32:04 CST)
• RMSF calculation: residue wise
  • hirdesh kumar (Sat Aug 21 2010 - 06:03:46 CDT)
  • hirdesh kumar (Fri Aug 20 2010 - 13:30:42 CDT)
  • Nicholas Musolino (Fri Aug 20 2010 - 12:46:36 CDT)
  • Axel Kohlmeyer (Fri Aug 20 2010 - 12:13:21 CDT)
  • hirdesh kumar (Fri Aug 20 2010 - 11:22:55 CDT)
• rmsf calculations
  • L. Michel Espinoza-Fonseca (Tue Feb 27 2007 - 05:51:47 CST)
  • bora erdemli (Tue Feb 27 2007 - 01:42:25 CST)
• RMSF measurement
  • Jérôme Hénin (Thu Feb 24 2011 - 05:47:36 CST)
  • Alex Liu (Wed Feb 23 2011 - 12:51:16 CST)
• RMSF plugin to share
  • flavio seixas (Fri Aug 10 2012 - 11:37:42 CDT)
• rmsf to b-factor conversion
  • abinayar_at_imsc.res.in (Wed Mar 07 2012 - 04:06:29 CST)
• RMSF Trajectory extraction script
  • Mustafa Tekpinar (Thu Dec 31 2020 - 15:43:35 CST)
  • John Stone (Thu Dec 31 2020 - 12:59:52 CST)
  • Mi Yang (Tue Dec 08 2020 - 05:39:33 CST)
• RMSF value of a group of atoms
  • John Stone (Mon Jan 09 2006 - 11:34:46 CST)
  • h9826299_at_hkusua.hku.hk (Fri Dec 23 2005 - 12:02:16 CST)
• RMSF_Calculation_Error_Using script
  • Rinky Parakra (Mon May 21 2018 - 19:32:48 CDT)
• RNA
  • George Madalin Giambasu (Mon May 14 2007 - 15:40:29 CDT)
  • Adrian Roitberg (Mon May 14 2007 - 14:25:03 CDT)
• RNA first residue
  • John Stone (Thu Apr 06 2006 - 14:29:42 CDT)
  • vvenditti_at_biochem.wisc.edu (Thu Apr 06 2006 - 14:20:33 CDT)
• rna pdb file
  • John Stone (Thu Feb 13 2003 - 14:13:58 CST)
  • Ioana Cozmuta (Wed Feb 12 2003 - 16:52:32 CST)
  • John Stone (Wed Feb 12 2003 - 16:08:55 CST)
  • Ioana Cozmuta (Wed Feb 12 2003 - 16:03:29 CST)
• RNA polymerase docking on DNA
  • Luis Rosales (Wed Feb 23 2005 - 22:55:20 CST)
  • Jérôme Hénin (Thu Feb 24 2005 - 02:04:50 CST)
  • Lady L. Gutierrez (Wed Feb 23 2005 - 18:54:11 CST)
• rna topology and parameters for rna
  • Brittany Morgan (Mon Oct 29 2007 - 08:20:16 CDT)
  • Samuel Flores (Mon Oct 29 2007 - 01:14:01 CDT)
  • Per Jr. Greisen (Mon Oct 29 2007 - 01:55:01 CDT)
  • Per Jr. Greisen (Sun Oct 28 2007 - 04:56:03 CDT)
  • Samuel Flores (Sun Oct 28 2007 - 03:23:39 CDT)
• rock around the clock?
  • Ivo Hofacker (Mon Oct 06 1997 - 21:25:08 CDT)
  • Christoph Schneider (Mon Oct 06 1997 - 11:02:46 CDT)
• rod-like shapes
  • John Stone (Fri Jan 20 2006 - 17:05:26 CST)
  • Craig Knox (Fri Jan 20 2006 - 16:49:21 CST)
• Rodlike mixture
  • John Stone (Wed Nov 19 2003 - 10:27:33 CST)
  • nabil Khalil (Wed Nov 19 2003 - 07:02:47 CST)
• Rolex replica is a ultimate gift
  • Jimmie Corona (Tue Apr 29 2008 - 08:25:38 CDT)
• Rosetta Academic Training Webinar
  • Nir London (Wed Mar 25 2009 - 11:10:34 CDT)
• Rosetta Academic Training Workshop
  • Nir London (Tue Jan 27 2009 - 07:05:12 CST)
• Rotate a box with pcb
  • Matteo Guglielmi (Thu Oct 18 2007 - 14:07:16 CDT)
  • Jan Saam (Thu Oct 18 2007 - 01:14:31 CDT)
  • John Stone (Wed Oct 17 2007 - 22:24:58 CDT)
  • Matteo Guglielmi (Tue Oct 09 2007 - 07:02:34 CDT)
• rotate a molecule
  • John Stone (Thu Dec 05 2002 - 17:12:33 CST)
  • eric hu (Thu Dec 05 2002 - 17:09:28 CST)
• rotate a selection of a molecule and write rotated coordinates
  • Rebeca García Fandiño (Wed Feb 20 2013 - 04:07:55 CST)
  • Axel Kohlmeyer (Wed Feb 20 2013 - 04:03:54 CST)
  • Rebeca García Fandiño (Wed Feb 20 2013 - 03:38:02 CST)
  • Axel Kohlmeyer (Tue Feb 19 2013 - 10:07:23 CST)
  • Rebeca García Fandiño (Tue Feb 19 2013 - 08:45:30 CST)
• Rotate a specific residue and save the coordinates in VMD
  • Ashar Malik (Wed Jan 17 2018 - 17:44:21 CST)
  • Giacomo Fiorin (Wed Jan 17 2018 - 10:22:37 CST)
  • Roshan Shrestha (Tue Jan 16 2018 - 22:25:01 CST)
• rotate atomic coordinates?
  • John Stone (Mon Aug 01 2005 - 14:32:54 CDT)
  • Samuel Flores (Sun Jul 31 2005 - 14:58:36 CDT)
• rotate dihedral angle
  • Sebastian Stolzenberg (Wed Sep 16 2009 - 14:21:00 CDT)
  • Peter Freddolino (Mon Sep 14 2009 - 21:32:23 CDT)
  • Jorgen Simonsen (Mon Sep 14 2009 - 14:08:21 CDT)
• Rotate dx map
  • John Stone (Fri Jun 22 2007 - 17:25:56 CDT)
  • Cesar Luis Avila (Thu Jun 21 2007 - 10:03:50 CDT)
• Rotate exchanges y and z axes?
  • Caro Miguel (Thu Nov 06 2014 - 02:29:03 CST)
  • John Stone (Wed Nov 05 2014 - 21:07:12 CST)
  • jing xia (Wed Nov 05 2014 - 19:53:16 CST)
  • Miguel Caro (Wed Nov 05 2014 - 04:53:08 CST)
• Rotate molecular system without rotating objects added with the graphics command
  • John Stone (Fri Nov 04 2016 - 09:53:00 CDT)
  • Eric Smoll (Thu Nov 03 2016 - 17:07:14 CDT)
• Rotatind a chain (some further Qs)
  • John Stone (Mon Mar 15 2004 - 13:49:01 CST)
  • Ahmet Bakan (Fri Mar 12 2004 - 13:43:41 CST)
• Rotatind a chainn
  • John Stone (Fri Mar 12 2004 - 12:46:47 CST)
  • Ahmet Bakan (Fri Mar 12 2004 - 08:59:09 CST)
• Rotating a molecule around its center of mass...
  • Nitin Bhardwaj (Wed Dec 08 2004 - 12:43:35 CST)
  • Nitin Bhardwaj (Wed Dec 08 2004 - 12:40:21 CST)
• Rotating a molecule to make it parallel to another bond
  • Giacomo Fiorin (Wed Jul 03 2019 - 13:32:12 CDT)
  • Monika Madhavi (Wed Jul 03 2019 - 12:10:22 CDT)
• Rotating a non-coordinate file
  • Reza Salari (Wed Jun 22 2011 - 12:50:10 CDT)
  • Axel Kohlmeyer (Wed Jun 22 2011 - 05:56:04 CDT)
  • Reza Salari (Wed Jun 22 2011 - 04:45:53 CDT)
• rotating a representation
  • Dallas Warren (Mon Mar 08 2004 - 15:39:53 CST)
  • John Stone (Mon Mar 08 2004 - 16:38:18 CST)
  • Harindar Keer (Mon Mar 08 2004 - 14:04:10 CST)
• Rotating and saving coordinates of a copy of molecule alongwith original molecule
  • Cosseddu, Salvatore (Thu Mar 31 2011 - 16:59:32 CDT)
  • Sujata Sovani (Thu Mar 31 2011 - 13:18:54 CDT)
• Rotating and translating molecules ..
  • Dallas Warren (Wed Jan 19 2005 - 17:04:06 CST)
  • Justin Gullingsrud (Wed Jan 19 2005 - 16:34:00 CST)
  • Dallas Warren (Wed Jan 19 2005 - 15:02:48 CST)
  • Justin Gullingsrud (Tue Jan 18 2005 - 20:56:22 CST)
  • Dallas Warren (Tue Jan 18 2005 - 19:15:56 CST)
• Rotating cube files
  • John Stone (Mon Jun 20 2005 - 17:35:43 CDT)
  • Mikolai Fajer (Mon Jun 20 2005 - 12:44:26 CDT)
• Rotating dihedrals
  • John Stone (Fri May 30 2003 - 16:04:54 CDT)
  • John Stone (Fri May 30 2003 - 15:16:18 CDT)
  • Patrick Ladam (Fri May 30 2003 - 05:09:43 CDT)
• rotating ligand
  • Steve Seibold (Wed Aug 26 2009 - 14:58:19 CDT)
  • Schreiner Eduard (Wed Aug 26 2009 - 15:07:49 CDT)
• Rotating the current view
  • John Stone (Sun Apr 11 2010 - 22:20:06 CDT)
  • Muhammet ©smet Töreh Balta (Thu Apr 08 2010 - 11:10:17 CDT)
• rotating two superposed molecules
  • Justin Gullingsrud (Sun Dec 16 2001 - 16:36:58 CST)
  • Marcela Madrid (Sun Dec 16 2001 - 14:44:44 CST)
• Rotating user-defined graphics?
  • Axel Kohlmeyer (Fri Feb 26 2010 - 13:24:30 CST)
  • Reid Van Lehn (Fri Feb 26 2010 - 12:24:43 CST)
• Rotation about one axis
  • Sweta Iyer (Wed Dec 08 2010 - 19:43:55 CST)
• rotation around phi/psi
  • Roman Petrenko (Sun Sep 21 2008 - 14:46:00 CDT)
  • John Stone (Sat Sep 20 2008 - 02:05:49 CDT)
  • Roman Petrenko (Fri Sep 19 2008 - 21:05:24 CDT)
• Rotation matrix translatin vector vmd
  • Peter Freddolino (Thu Jul 26 2007 - 07:26:09 CDT)
  • Hazai Eszter (Thu Jul 26 2007 - 05:37:23 CDT)
• Rotation of molecules
  • Axel Kohlmeyer (Tue Dec 02 2008 - 11:29:25 CST)
  • Björn Windshügel (Tue Dec 02 2008 - 08:20:30 CST)
• Rotation of the color scale bar in VMD
  • bibhab majumdar (Sun Feb 26 2023 - 22:21:11 CST)
• rotation to align
  • Ana Celia Araujo Vila Verde (Fri Jan 19 2007 - 07:59:55 CST)
  • Himanshu Khandelia (Fri Jan 19 2007 - 05:41:31 CST)
• RPM spec file
  • Axel Kohlmeyer (Tue Oct 17 2006 - 11:04:37 CDT)
  • Andrew Gormanly (Tue Oct 17 2006 - 08:03:45 CDT)
• RSCB assembly formatting change - chain names with hyphens and numbers not recognized in VMD
  • Evelyn Maizels (Fri Feb 18 2022 - 10:14:25 CST)
  • Evelyn Maizels (Thu Feb 17 2022 - 19:17:06 CST)
• RSMD of coarse grained molecules
  • Gregorio Alanislobato (Tue Aug 17 2010 - 16:14:46 CDT)
  • Axel Kohlmeyer (Mon Aug 16 2010 - 22:21:50 CDT)
  • John Stone (Mon Aug 16 2010 - 21:50:07 CDT)
  • Gregorio Alanislobato (Mon Aug 16 2010 - 20:29:13 CDT)
  • Mert Gür (Mon Aug 16 2010 - 13:58:02 CDT)
  • John Stone (Mon Aug 16 2010 - 12:57:59 CDT)
  • Gregorio Alanislobato (Mon Aug 16 2010 - 12:13:59 CDT)
• rst7 as input file bug
  • James Kress (Thu May 17 2018 - 21:24:15 CDT)
  • Robin Betz (Thu May 17 2018 - 19:45:20 CDT)
  • James Kress (Thu May 17 2018 - 18:36:27 CDT)
• RTX for raytracing
  • John Stone (Wed Oct 10 2018 - 10:29:37 CDT)
  • Stefan Doerr (Thu Sep 27 2018 - 10:24:35 CDT)
  • John Stone (Thu Sep 27 2018 - 10:02:42 CDT)
  • Giacomo Fiorin (Thu Sep 27 2018 - 09:12:41 CDT)
  • Stefan Doerr (Thu Sep 27 2018 - 05:20:51 CDT)
• RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted...
  • John Stone (Mon Apr 29 2019 - 20:50:31 CDT)
  • John Stone (Mon Apr 29 2019 - 21:09:42 CDT)
  • Dallas Warren (Mon Apr 29 2019 - 19:00:35 CDT)
  • Dallas Warren (Mon Apr 29 2019 - 18:59:40 CDT)
  • Dallas Warren (Mon Apr 29 2019 - 18:52:15 CDT)
  • John Stone (Sat Mar 16 2019 - 01:11:39 CDT)
  • Vermaas, Joshua (Mon Mar 11 2019 - 18:15:16 CDT)
  • Brian Radak (Mon Mar 11 2019 - 16:57:12 CDT)
  • John Stone (Mon Mar 11 2019 - 15:35:39 CDT)
  • John Stone (Tue Mar 05 2019 - 22:00:23 CST)
  • John Stone (Tue Mar 05 2019 - 10:17:50 CST)
  • Casalino, Lorenzo (Tue Feb 26 2019 - 13:02:03 CST)
  • John Stone (Mon Feb 25 2019 - 20:40:16 CST)
• Run a variable through VMD Tk/Tcl console .vmdrc file
  • Anthony Rey (Mon Oct 31 2011 - 02:09:42 CDT)
  • Chris Harrison (Sun Oct 30 2011 - 10:28:37 CDT)
  • Axel Kohlmeyer (Sun Oct 30 2011 - 10:04:09 CDT)
  • Anthony Rey (Sun Oct 30 2011 - 06:55:06 CDT)
• Run a variable through VMD Tk/Tcl console /// .vmdrc file
  • Anthony Rey (Sun Oct 30 2011 - 06:14:22 CDT)
• run and close vmd with bash script?
  • Salvatore Mario Cosseddu (Wed May 18 2011 - 11:21:35 CDT)
  • Axel Kohlmeyer (Wed May 18 2011 - 10:42:53 CDT)
  • Salvatore Mario Cosseddu (Wed May 18 2011 - 10:10:22 CDT)
  • Axel Kohlmeyer (Wed May 18 2011 - 08:23:49 CDT)
  • Jorgen Simonsen (Wed May 18 2011 - 07:04:26 CDT)
• Run Python Scripts in VMD on Mac OS X
  • Axel Kohlmeyer (Tue Apr 27 2010 - 08:38:32 CDT)
  • Burkhard Heil (Tue Apr 27 2010 - 06:52:50 CDT)
• Run time error on Max Impact
  • Brian Corrie (Wed Apr 16 1997 - 01:16:40 CDT)
• run_vmd_tmp: Permission denied
  • adil mughal (Thu Apr 22 2010 - 11:38:37 CDT)
  • John Stone (Thu Apr 22 2010 - 10:32:35 CDT)
  • adil mughal (Tue Apr 20 2010 - 10:37:09 CDT)
• Running 64-bit Linux VMD in VMWare VM on Windows 8.1 64-bit Host Machine
  • Norman Geist (Mon May 18 2015 - 02:47:21 CDT)
  • John Stone (Sat May 16 2015 - 13:51:48 CDT)
  • Matic Kisovec (Fri May 15 2015 - 10:53:33 CDT)
  • Justin (Fri May 15 2015 - 04:16:16 CDT)
• running a C code in VMD
  • Rohan Mehta (Thu Jun 26 2014 - 23:18:36 CDT)
  • Axel Kohlmeyer (Thu Jun 26 2014 - 06:43:17 CDT)
  • Shailesh Pandey (Thu Jun 26 2014 - 05:59:44 CDT)
  • Ajasja LjubetiÄ� (Thu Jun 26 2014 - 05:25:30 CDT)
  • Rohan Mehta (Thu Jun 26 2014 - 04:38:40 CDT)
• running a script
  • Axel Kohlmeyer (Thu Nov 20 2008 - 11:54:38 CST)
  • Mark M Huntress (Thu Nov 20 2008 - 10:03:10 CST)
• Running a script using text mode
  • Axel Kohlmeyer (Tue Nov 21 2006 - 12:18:02 CST)
  • Myunggi Yi (Tue Nov 21 2006 - 11:45:15 CST)
  • Myunggi Yi (Tue Nov 21 2006 - 11:39:53 CST)
  • Myunggi Yi (Tue Nov 21 2006 - 11:36:11 CST)
  • John Stone (Tue Nov 21 2006 - 10:31:11 CST)
  • Myunggi Yi (Tue Nov 21 2006 - 09:47:43 CST)
• Running a source script from a C shell
  • Kyle Wildermuth (Thu Jun 02 2016 - 13:38:04 CDT)
  • Bennion, Brian (Thu Jun 02 2016 - 12:53:41 CDT)
  • Ky Wildermuth (Wed Jun 01 2016 - 21:52:38 CDT)
• Running a vmd tcl script in the background
  • Axel Kohlmeyer (Mon Aug 13 2007 - 19:11:53 CDT)
  • Arneh Babakhani (Mon Aug 13 2007 - 19:05:20 CDT)
• Running ABF to separate DNA strands
  • Charles Whidborne (Mon Aug 04 2014 - 19:36:33 CDT)
• Running ABF to seperate DNA strands
  • Axel Kohlmeyer (Mon Aug 04 2014 - 20:35:35 CDT)
  • Charles Whidborne (Mon Aug 04 2014 - 19:40:28 CDT)
• Running atomselect made a seg fault
  • John Stone (Thu Jan 28 2016 - 22:11:31 CST)
  • yong zhou (Thu Jan 21 2016 - 21:15:49 CST)
  • John Stone (Thu Jan 21 2016 - 09:34:15 CST)
  • yong zhou (Thu Jan 21 2016 - 09:11:24 CST)
• running ca-dist.tcl
  • L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 10:38:50 CDT)
  • Simpson, Lisa M (Thu Mar 20 2008 - 08:57:47 CDT)
• Running Cionize1.0
  • Peter Freddolino (Sat Aug 25 2018 - 20:44:35 CDT)
  • Archana Sonawani-Jagtap (Sat Aug 25 2018 - 15:27:45 CDT)
• Running CUDA on a laptop
  • Jeremiah Babcock (Thu Jan 15 2015 - 22:59:18 CST)
  • Tristan Croll (Tue Jan 13 2015 - 19:14:31 CST)
  • Tristan Croll (Tue Jan 13 2015 - 18:29:59 CST)
• Running equilibration MD simulation
  • Rafael Bernardi (Tue Jan 05 2021 - 22:23:27 CST)
  • Tiglath Moradkhan (Tue Jan 05 2021 - 15:06:41 CST)
• Running Hydrogen Bonding Analysis with Script
  • 刘宸宇 (Sun Mar 22 2020 - 16:53:21 CDT)
  • Jérôme Hénin (Sun Mar 22 2020 - 08:06:47 CDT)
  • 刘宸宇 (Sun Mar 22 2020 - 02:04:34 CDT)
• running ILS under Windows 7
  • Irene Newhouse (Sun Mar 14 2010 - 16:51:20 CDT)
  • Axel Kohlmeyer (Sun Mar 14 2010 - 14:11:16 CDT)
  • Irene Newhouse (Sat Mar 13 2010 - 22:32:15 CST)
• Running IMD interactivelly under the shell
  • Nuno Sousa Cerqueira (Thu Mar 18 2010 - 17:50:33 CDT)
  • Axel Kohlmeyer (Thu Mar 18 2010 - 17:56:52 CDT)
  • Axel Kohlmeyer (Thu Mar 18 2010 - 16:54:42 CDT)
  • John Stone (Thu Mar 18 2010 - 16:16:06 CDT)
  • Nuno Sousa Cerqueira (Thu Mar 18 2010 - 14:18:22 CDT)
• running LAMMPS output via VMD
  • Axel Kohlmeyer (Mon Feb 01 2010 - 07:37:44 CST)
  • Krigel, Igal (Mon Feb 01 2010 - 06:10:56 CST)
• Running Multiseq Operations in Text-Only Mode
  • Dennis N (Thu Nov 07 2013 - 16:53:42 CST)
• Running Namd in Window
  • John Stone (Mon Jan 03 2011 - 13:46:34 CST)
  • zizi moradi (Fri Dec 31 2010 - 18:34:43 CST)
• running namd2 on Mac PPC cluster
  • Axel Kohlmeyer (Sun Feb 14 2010 - 15:16:22 CST)
  • Robert Wohlhueter (Sun Feb 14 2010 - 13:13:16 CST)
• Running out of memory due to multiple mol addfile's (?)
  • Alexander Balaeff (Wed Mar 01 2017 - 13:42:37 CST)
  • Vermaas, Joshua (Fri Jan 27 2017 - 14:36:34 CST)
  • Alexander Balaeff (Fri Jan 27 2017 - 13:07:23 CST)
  • Alexander Balaeff (Fri Jan 27 2017 - 12:59:17 CST)
  • Ashar Malik (Fri Jan 27 2017 - 02:01:13 CST)
  • Alexander Balaeff (Fri Jan 27 2017 - 00:03:15 CST)
• running plugin from the command line
  • Sara Nichols (Thu Apr 28 2011 - 11:28:43 CDT)
  • Leonardo Trabuco (Thu Apr 28 2011 - 11:12:06 CDT)
  • Axel Kohlmeyer (Wed Apr 27 2011 - 15:34:10 CDT)
  • Sara Nichols (Wed Apr 27 2011 - 14:49:33 CDT)
• Running ProcupinePlot script
  • Ban Arn (Mon Jun 25 2012 - 04:16:28 CDT)
  • Ban Arn (Fri Jun 22 2012 - 12:30:56 CDT)
  • John Stone (Fri Jun 22 2012 - 12:13:06 CDT)
  • Ban Arn (Fri Jun 22 2012 - 12:04:04 CDT)
  • John Stone (Fri Jun 22 2012 - 11:59:59 CDT)
  • Ban Arn (Fri Jun 22 2012 - 11:54:15 CDT)
  • Ban Arn (Fri Jun 22 2012 - 11:53:33 CDT)
  • John Stone (Fri Jun 22 2012 - 11:44:18 CDT)
  • Ban Arn (Fri Jun 22 2012 - 10:01:38 CDT)
• Running Python within VMD
  • John Stone (Wed Mar 03 2010 - 10:41:49 CST)
  • radak004_at_umn.edu (Tue Mar 02 2010 - 13:07:51 CST)
• Running RMSF script on compute canada
  • Vermaas, Joshua (Fri Dec 13 2019 - 12:34:23 CST)
  • Vermaas, Joshua (Fri Dec 13 2019 - 11:00:44 CST)
  • crockett c.h. (chc2g16) (Thu Dec 12 2019 - 20:09:49 CST)
  • Joao Ribeiro (Thu Dec 12 2019 - 16:18:58 CST)
  • crockett c.h. (chc2g16) (Thu Dec 12 2019 - 12:43:26 CST)
• running simulation on dual core processor
  • JC Gumbart (Fri Sep 19 2008 - 13:50:27 CDT)
  • Mamta Mohan (Fri Sep 19 2008 - 10:44:27 CDT)
• running TCL script
  • Roshan Shrestha (Tue Sep 14 2021 - 05:35:25 CDT)
  • Ashar Malik (Tue Sep 14 2021 - 05:30:01 CDT)
  • Bakary N'tji Diallo (Tue Sep 14 2021 - 04:19:12 CDT)
• Running TCL scripts (textmode) on a Server
  • Axel Kohlmeyer (Wed Mar 25 2015 - 11:21:03 CDT)
  • Stephan Grein (Wed Mar 25 2015 - 10:56:52 CDT)
  • Morgan, Brittany (Wed Mar 25 2015 - 07:20:38 CDT)
  • Joaquim Rui de Castro Rodrigues (Wed Mar 25 2015 - 07:12:38 CDT)
  • Michail Palaiokostas Avramidis (Wed Mar 25 2015 - 06:57:57 CDT)
  • karthik kumar (Wed Mar 25 2015 - 06:48:34 CDT)
  • Stephan Grein (Wed Mar 25 2015 - 06:45:04 CDT)
  • Stephan Grein (Wed Mar 25 2015 - 06:00:58 CDT)
• Running the ParseFEP Plugin from the Command Line
  • David Huggins (Thu Sep 26 2013 - 11:14:59 CDT)
• running under Shell using VMD
  • Axel Kohlmeyer (Tue Nov 03 2009 - 21:43:33 CST)
  • John Stone (Tue Nov 03 2009 - 09:11:05 CST)
  • Nuno Sousa Cerqueira (Tue Nov 03 2009 - 07:41:11 CST)
  • Nicolas Sapay (Tue Nov 03 2009 - 05:07:45 CST)
  • Nuno Sousa Cerqueira (Tue Nov 03 2009 - 02:29:30 CST)
• Running vmd
  • Mahmood Naderan (Tue Mar 06 2018 - 11:55:43 CST)
  • John Stone (Mon Mar 05 2018 - 09:59:51 CST)
  • Axel Kohlmeyer (Mon Mar 05 2018 - 09:50:16 CST)
  • Mahmood Naderan (Mon Mar 05 2018 - 09:14:11 CST)
  • Ashar Malik (Mon Mar 05 2018 - 06:54:44 CST)
  • Mahmood Naderan (Mon Mar 05 2018 - 06:30:24 CST)
  • Axel Kohlmeyer (Mon Mar 05 2018 - 04:55:07 CST)
  • Ashar Malik (Mon Mar 05 2018 - 05:00:48 CST)
  • Mahmood Naderan (Mon Mar 05 2018 - 04:26:16 CST)
  • Giacomo Fiorin (Sun Mar 04 2018 - 13:58:37 CST)
  • Mahmood Naderan (Sun Mar 04 2018 - 09:20:14 CST)
  • John Stone (Thu Mar 03 2005 - 13:53:11 CST)
  • Claire Zerafa (Thu Mar 03 2005 - 12:42:35 CST)
• Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+
  • Rudy Richardson (Wed Feb 01 2023 - 15:59:36 CST)
  • Brendan Dennis (Wed Feb 01 2023 - 13:51:43 CST)
  • Vermaas, Josh (Wed Feb 01 2023 - 08:23:56 CST)
  • Brendan Dennis (Wed Feb 01 2023 - 01:10:25 CST)
  • John Stone (Tue Jan 31 2023 - 22:30:35 CST)
  • Brendan Dennis (Tue Jan 31 2023 - 16:48:10 CST)
  • Vermaas, Josh (Tue Jan 31 2023 - 14:04:57 CST)
  • Brendan Dennis (Tue Jan 31 2023 - 13:16:41 CST)
  • Rudy Richardson (Tue Jan 31 2023 - 10:22:04 CST)
  • Josh Vermaas (Tue Jan 31 2023 - 08:58:37 CST)
  • Brendan Dennis (Mon Jan 30 2023 - 20:16:39 CST)
• running vmd as pbs job
  • zhenlong li (Fri May 09 2008 - 08:34:41 CDT)
  • John Stone (Fri May 09 2008 - 02:29:22 CDT)
  • zhenlong li (Tue May 06 2008 - 14:40:44 CDT)
• Running VMD from the terminal on MacBook Pro
  • Steven S Plotkin (Wed Nov 03 2010 - 11:30:51 CDT)
  • Shore, Jay (Wed Nov 03 2010 - 10:52:49 CDT)
  • Leonardo Trabuco (Wed Nov 03 2010 - 08:37:44 CDT)
  • Steven S Plotkin (Wed Nov 03 2010 - 08:25:15 CDT)
• running vmd in batch mode
  • John Stone (Thu Nov 06 2003 - 19:26:27 CST)
  • Ioana Cozmuta (Thu Nov 06 2003 - 19:19:30 CST)
  • John Stone (Thu Nov 06 2003 - 17:28:49 CST)
  • Ioana Cozmuta (Thu Nov 06 2003 - 15:46:19 CST)
• running vmd in parallel
  • Axel Kohlmeyer (Wed Mar 05 2008 - 12:37:02 CST)
  • John Stone (Wed Mar 05 2008 - 12:31:35 CST)
  • Michael Kreim (Wed Mar 05 2008 - 11:13:10 CST)
• Running VMD in user folder on Windows (bug fix?)
  • Pawel Kedzierski (Tue Mar 31 2015 - 04:09:21 CDT)
  • Pawel Kedzierski (Wed Mar 25 2015 - 10:20:20 CDT)
  • Ajasja LjubetiÄ� (Wed Mar 25 2015 - 05:03:52 CDT)
  • Pawel Kedzierski (Wed Mar 25 2015 - 04:33:10 CDT)
  • Pawel Kedzierski (Wed Mar 25 2015 - 03:50:29 CDT)
• Running VMD on Blue Waters
  • Jaime Guevara (Thu Jul 06 2017 - 11:52:21 CDT)
  • John Stone (Thu Jun 29 2017 - 13:08:52 CDT)
  • Jaime Guevara (Thu Jun 29 2017 - 11:09:46 CDT)
• running vmd on computer node
  • Axel Kohlmeyer (Mon Jun 29 2009 - 13:46:51 CDT)
  • BIN ZHANG (Mon Jun 29 2009 - 12:55:08 CDT)
• Running VMD on Mac OS X
  • Christopher Share (Mon Dec 01 2008 - 23:23:08 CST)
• Running VTK from VMD's python
  • John Stone (Tue Nov 25 2003 - 13:52:55 CST)
  • Lars Bruno Hansen (Tue Nov 25 2003 - 06:55:29 CST)
  • John Stone (Fri Nov 21 2003 - 17:51:02 CST)
  • Lars Bruno Hansen (Thu Nov 13 2003 - 09:51:13 CST)
  • John Stone (Mon Nov 10 2003 - 11:01:04 CST)
  • Lars Bruno Hansen (Mon Nov 10 2003 - 04:12:25 CST)
  • John Stone (Thu Nov 06 2003 - 16:50:53 CST)
  • Lars Bruno Hansen (Thu Oct 30 2003 - 11:15:23 CST)
  • John Stone (Thu Oct 30 2003 - 10:42:15 CST)
  • Justin Gullingsrud (Thu Oct 30 2003 - 09:29:46 CST)
  • Lars Bruno Hansen (Thu Oct 30 2003 - 08:21:43 CST)
• Running without interface
  • Axel Kohlmeyer (Thu Sep 04 2008 - 12:06:44 CDT)
  • Emily Moore (Thu Sep 04 2008 - 11:29:02 CDT)
• runsqm plugin required but not installed
  • John Stone (Tue Aug 24 2010 - 17:12:24 CDT)
• RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5)
  • J. Rui Rodrigues (Tue Apr 06 2010 - 08:11:00 CDT)
  • John Stone (Fri Apr 02 2010 - 00:26:18 CDT)
  • J. Rui Rodrigues (Thu Apr 01 2010 - 11:51:06 CDT)
• Rx for VMD crashing PC?
  • John Stone (Mon Oct 05 2009 - 20:46:10 CDT)
  • MyLinkka (Mon Oct 05 2009 - 17:40:16 CDT)
  • Ronald Salesky (Fri Oct 02 2009 - 11:42:51 CDT)
  • John Stone (Fri Oct 02 2009 - 10:26:13 CDT)
  • Ronald Salesky (Thu Oct 01 2009 - 21:57:00 CDT)
• Réf. : calculate rmsd in a loop:feedback [sorry if you get it twice]
  • l.spitzer_at_fr.fournierpharma.com (Thu Nov 17 2005 - 04:50:45 CST)
  • Nuno R. L. Ferreira (Thu Nov 17 2005 - 04:34:44 CST)
  • Nuno R. L. Ferreira (Thu Nov 17 2005 - 04:14:40 CST)
  • andrea spitaleri (Thu Nov 17 2005 - 04:14:01 CST)
  • l.spitzer_at_fr.fournierpharma.com (Thu Nov 17 2005 - 03:52:05 CST)
• s-s bond in vmd not visualized
  • John Stone (Thu Dec 08 2005 - 16:36:29 CST)
  • andrea spitaleri (Mon Dec 05 2005 - 03:24:16 CST)
  • John Stone (Fri Dec 02 2005 - 13:07:24 CST)
  • andrea spitaleri (Tue Nov 29 2005 - 03:22:52 CST)
  • John Stone (Mon Nov 28 2005 - 11:21:49 CST)
  • Axel Kohlmeyer (Wed Nov 23 2005 - 11:31:57 CST)
  • andrea spitaleri (Wed Nov 23 2005 - 03:05:39 CST)
  • JC Gumbart (Wed Nov 23 2005 - 13:43:35 CST)
  • andrea spitaleri (Tue Nov 22 2005 - 07:03:52 CST)
• salt bridge
  • sunyeping (Wed Jul 02 2014 - 09:18:47 CDT)
  • sunyeping (Wed Jul 02 2014 - 08:41:15 CDT)
• salt bridge cutoff distance
  • LW (Wed Sep 02 2015 - 17:27:07 CDT)
  • John Stone (Wed Sep 02 2015 - 13:55:30 CDT)
  • LW (Fri Aug 28 2015 - 04:30:00 CDT)
• Salt bridges
  • Nuno R. L. Ferreira (Thu Apr 27 2006 - 09:14:32 CDT)
• Salt brigde
  • Jérôme Hénin (Thu Jul 07 2011 - 15:32:27 CDT)
  • John Stone (Thu Jul 07 2011 - 13:01:56 CDT)
  • Christian Wohlschlager (Thu Jul 07 2011 - 01:06:51 CDT)
• Salt-Bridge Calculation
  • PRITI ROY (Fri Jun 23 2017 - 02:10:40 CDT)
• saltbr plugging problem: too many open files
  • Leonardo Trabuco (Fri Dec 21 2007 - 14:35:16 CST)
  • Amaury Pupo Meriño (Fri Dec 21 2007 - 09:31:07 CST)
• saltbr# vs. frames
  • Leonardo Trabuco (Mon Jul 23 2007 - 10:32:46 CDT)
  • Leonardo Trabuco (Mon Jul 23 2007 - 10:28:01 CDT)
  • hori koshii (Mon Jul 23 2007 - 06:50:10 CDT)
• salvation of heavy water
  • Axel Kohlmeyer (Mon Feb 19 2018 - 09:45:18 CST)
  • Suresh Ghimire (Mon Feb 19 2018 - 09:12:33 CST)
• Same pdb file, different image
  • hamdi (Fri Feb 23 2007 - 03:02:57 CST)
  • Leonardo Trabuco (Thu Feb 22 2007 - 23:44:37 CST)
  • Hai-Jun Su (Thu Feb 22 2007 - 22:11:27 CST)
• same problem
  • Albert (Tue Feb 05 2013 - 12:31:29 CST)
• Same starting configuration gives two starting values of backbone RMSD
  • Monika Madhavi (Fri Dec 15 2017 - 05:52:39 CST)
• Same starting configuration gives two values of backbone RMSD
  • Ashar Malik (Fri Dec 15 2017 - 18:56:57 CST)
  • Monika Madhavi (Fri Dec 15 2017 - 16:35:22 CST)
  • Ashar Malik (Fri Dec 15 2017 - 06:58:29 CST)
  • Monika Madhavi (Fri Dec 15 2017 - 06:30:24 CST)
  • Ashar Malik (Fri Dec 15 2017 - 06:10:00 CST)
  • Monika Madhavi (Fri Dec 15 2017 - 04:55:54 CST)
• same view in VMD and Molscript
  • John Stone (Tue Feb 25 2003 - 15:08:47 CST)
  • Eckhart Guthöhrlein (Tue Feb 25 2003 - 10:22:10 CST)
• SangbaeLee: question about pbc wrap
  • Lee, Sangbae (Thu Aug 29 2013 - 13:12:21 CDT)
• SAS values for a residue
  • Mgr. Lubos Vrbka (Thu Jul 28 2005 - 05:00:35 CDT)
  • John Stone (Wed Jul 27 2005 - 10:30:31 CDT)
  • Michel Espinoza-Fonseca (Wed Jul 27 2005 - 10:22:41 CDT)
  • Andrea Carotti (Wed Jul 27 2005 - 07:58:45 CDT)
• sasa
  • John Stone (Tue Apr 17 2007 - 13:15:22 CDT)
  • John Stone (Fri Apr 13 2007 - 11:07:50 CDT)
  • Myunggi Yi (Thu Apr 12 2007 - 16:16:09 CDT)
  • Myunggi Yi (Thu Apr 12 2007 - 16:14:41 CDT)
  • John Stone (Thu Apr 12 2007 - 15:08:32 CDT)
  • Myunggi Yi (Thu Apr 12 2007 - 10:02:14 CDT)
  • Myunggi Yi (Wed Apr 11 2007 - 21:42:25 CDT)
  • John Stone (Mon Aug 08 2005 - 19:19:47 CDT)
  • Irena Tuszyska (Mon Aug 08 2005 - 04:17:17 CDT)
  • John Stone (Fri Jan 31 2003 - 10:24:41 CST)
  • Rukman Hertadi (Fri Jan 31 2003 - 03:59:16 CST)
• SASA -tcl script
  • John Stone (Tue Feb 21 2012 - 14:31:09 CST)
  • Ban Arn (Tue Feb 21 2012 - 12:36:07 CST)
• SASA Algorithm?
  • John Stone (Wed May 22 2013 - 11:08:40 CDT)
  • Esra Bozkurt (Wed Apr 17 2013 - 11:04:24 CDT)
• SASA Algorithm??
  • Axel Kohlmeyer (Fri Aug 10 2012 - 06:42:54 CDT)
  • Jeremy Lucid (Fri Aug 10 2012 - 04:46:27 CDT)
• SASA and SESA
  • John Stone (Sun Jan 24 2010 - 15:47:28 CST)
  • Eduard Schreiner (Sun Jan 24 2010 - 15:38:54 CST)
  • Khaled Barakat (Sun Jan 24 2010 - 15:31:59 CST)
  • John Stone (Sun Jan 24 2010 - 14:51:08 CST)
  • Khaled Barakat (Sun Jan 24 2010 - 14:44:45 CST)
  • Khaled Barakat (Fri Jan 22 2010 - 20:22:25 CST)
• SASA area
  • Anna Battisti (Tue Jan 31 2017 - 01:28:16 CST)
• sasa by residue
  • Peter Freddolino (Thu Jan 11 2007 - 22:33:55 CST)
  • alexandra.marques_at_fc.up.pt (Thu Jan 11 2007 - 13:42:07 CST)
  • Peter Freddolino (Tue Jan 09 2007 - 10:02:00 CST)
  • alexandra.marques_at_fc.up.pt (Mon Jan 08 2007 - 19:01:04 CST)
• SASA calculation
  • Aditya Padhi (Mon May 09 2011 - 05:26:36 CDT)
• SASA calculation (protein + small molecules)
  • John Stone (Fri Feb 29 2008 - 13:11:37 CST)
  • Dong Xu (Sun Feb 24 2008 - 20:42:44 CST)
  • Manali Mehendale (Thu Feb 07 2008 - 14:45:37 CST)
• SASA calculation for a trajectory
  • L. Michel Espinoza-Fonseca (Tue Aug 08 2006 - 21:31:51 CDT)
  • Gaurav Sharma (Tue Aug 08 2006 - 20:50:32 CDT)
• SASA calculation for sidechains of my peptide residues
  • Daeun Noh (Thu Jun 06 2019 - 15:42:13 CDT)
  • Vermaas, Joshua (Thu Jun 06 2019 - 11:05:15 CDT)
  • Daeun Noh (Wed Jun 05 2019 - 17:44:20 CDT)
• SASA calculation using periodic images?
  • Jesper Sørensen (Thu May 05 2011 - 07:27:34 CDT)
  • Edward Lyman (Tue May 03 2011 - 09:34:57 CDT)
  • Jesper Sørensen (Tue May 03 2011 - 08:38:29 CDT)
  • Axel Kohlmeyer (Tue May 03 2011 - 07:10:56 CDT)
  • Jesper Sørensen (Tue May 03 2011 - 06:50:35 CDT)
  • Jesper Sørensen (Tue May 03 2011 - 06:14:31 CDT)
• SASA calculation with periodic images
  • Vermaas, Joshua (Tue Apr 16 2019 - 12:17:26 CDT)
  • Projesh Roy (Tue Apr 16 2019 - 05:04:49 CDT)
• SASA Cutoff Value for Residues on Protein Surface
  • Josh (Wed Nov 22 2023 - 11:20:46 CST)
  • Roni Saiba (Tue Nov 21 2023 - 22:02:41 CST)
  • Kevin Lin (Tue Nov 21 2023 - 18:08:58 CST)
• sasa function
  • John Stone (Thu Jan 21 2010 - 14:09:13 CST)
  • Deepangi Pandit (Thu Jan 21 2010 - 09:13:45 CST)
  • Bernhard Knapp (Thu Jan 21 2010 - 02:32:31 CST)
• Sasa implentation/ algorithm VMD
  • John Stone (Sat Jul 03 2010 - 09:14:11 CDT)
  • henri mone (Thu Jul 01 2010 - 17:19:06 CDT)
• SASA measurements
  • John Stone (Tue May 08 2007 - 14:00:49 CDT)
  • Michael S. Marlow (Tue May 08 2007 - 11:17:12 CDT)
• Sasa script in python returns "Runtime error"
  • Per Jr. Greisen (Wed Jan 30 2008 - 10:13:38 CST)
  • Axel Kohlmeyer (Wed Jan 30 2008 - 10:24:55 CST)
  • Axel Kohlmeyer (Wed Jan 30 2008 - 10:28:57 CST)
  • John Stone (Wed Jan 30 2008 - 10:26:18 CST)
  • Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
  • Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
  • Per Jr. Greisen (Tue Jan 29 2008 - 09:53:59 CST)
• Satellite tobacco mosaic virus images making by VMD
  • Anton Arkhipov (Tue May 05 2009 - 12:48:10 CDT)
  • John Stone (Tue May 05 2009 - 10:28:42 CDT)
  • ÖÜÎIJý (Tue May 05 2009 - 10:16:45 CDT)
  • John Stone (Tue May 05 2009 - 09:24:32 CDT)
  • ÖÜÎIJý (Tue May 05 2009 - 08:31:33 CDT)
• sausage nmr ensemble
  • John Stone (Tue Mar 21 2006 - 10:34:01 CST)
  • spitaleri.andrea_at_hsr.it (Tue Mar 21 2006 - 10:09:48 CST)
  • John Stone (Tue Mar 21 2006 - 09:50:08 CST)
  • spitaleri.andrea_at_hsr.it (Tue Mar 21 2006 - 04:09:48 CST)
• sausage view of NMR ensembles
  • John Stone (Thu Jan 31 2008 - 23:31:36 CST)
  • dimka (Thu Jan 31 2008 - 23:10:59 CST)
• save
  • John Stone (Tue Aug 20 2002 - 17:23:26 CDT)
  • Vlad Cojocaru (Tue Aug 20 2002 - 06:15:02 CDT)
• Save "Visulaization State" from within Tk Console
  • Bjoern Olausson (Mon Nov 14 2011 - 01:17:02 CST)
  • John Stone (Fri Nov 11 2011 - 09:20:43 CST)
  • Axel Kohlmeyer (Fri Nov 11 2011 - 08:57:13 CST)
  • Axel Kohlmeyer (Fri Nov 11 2011 - 08:41:38 CST)
  • Bjoern Olausson (Fri Nov 11 2011 - 07:48:03 CST)
  • Bjoern Olausson (Fri Nov 11 2011 - 07:41:18 CST)
• Save Atom Selection to DCD
  • Axel Kohlmeyer (Thu Dec 16 2010 - 04:29:53 CST)
  • Wei Chen (Wed Dec 15 2010 - 14:55:24 CST)
  • David Huggins (Wed Dec 15 2010 - 13:46:16 CST)
• save config & RMSD not functioning
  • John Stone (Thu Nov 29 2001 - 11:26:24 CST)
  • nepenthes_at_vplaces.net (Thu Nov 29 2001 - 01:28:10 CST)
• Save contact map data in other formats besides postscript
  • Roshan Shrestha (Wed Dec 20 2017 - 17:20:23 CST)
• save contact map residue-residue distance plot
  • Souvik Sinha (Tue Jan 21 2020 - 00:37:34 CST)
  • SHAHEE ISLAM (Mon Jan 20 2020 - 23:38:19 CST)
  • Axel Kohlmeyer (Mon Jan 20 2020 - 08:28:11 CST)
  • SHAHEE ISLAM (Mon Jan 20 2020 - 03:36:22 CST)
• Save coor coordinates as pdb
  • John Stone (Wed Feb 01 2012 - 13:53:58 CST)
  • R. Charbel Maroun (Wed Feb 01 2012 - 12:26:31 CST)
• save coordinate POSCAR
  • Axel Kohlmeyer (Tue May 10 2011 - 13:50:39 CDT)
  • Haijun (Tue May 10 2011 - 13:58:07 CDT)
  • Axel Kohlmeyer (Tue May 10 2011 - 13:30:03 CDT)
  • Haijun (Tue May 10 2011 - 12:56:09 CDT)
• save coordinates
  • John Stone (Mon Mar 30 2015 - 17:32:16 CDT)
  • Ducasse Laurent (Mon Mar 30 2015 - 09:00:31 CDT)
• save coordinates after moving them.
  • Cesar Millan (Wed Oct 04 2006 - 15:35:33 CDT)
  • John Stone (Wed Oct 04 2006 - 00:12:59 CDT)
  • Cesar Millan (Tue Oct 03 2006 - 15:32:17 CDT)
  • John Stone (Tue Oct 03 2006 - 14:35:50 CDT)
  • Cesar Millan (Tue Oct 03 2006 - 14:02:41 CDT)
• Save Coordinates for Multiple Loads
  • Vlad Cojocaru (Mon May 30 2011 - 00:33:50 CDT)
  • Vlad Cojocaru (Sun May 29 2011 - 14:53:11 CDT)
  • Axel Kohlmeyer (Sun May 29 2011 - 10:17:22 CDT)
  • Qmer_AN?= (Sun May 29 2011 - 09:14:25 CDT)
• Save coordinates from MD simulation
  • Axel Kohlmeyer (Thu Jan 04 2007 - 11:46:39 CST)
  • Per Jr. Greisen (Thu Jan 04 2007 - 10:55:34 CST)
• Save Coordinates Question ...
  • Axel Kohlmeyer (Fri Mar 25 2011 - 13:04:44 CDT)
  • Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:34:01 CDT)
  • Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:22:50 CDT)
• Save molecule in pdb format
  • Peter C. Lai (Sat Apr 30 2011 - 13:50:01 CDT)
  • Axel Kohlmeyer (Sat Apr 30 2011 - 04:42:15 CDT)
  • Peter C. Lai (Sat Apr 30 2011 - 04:34:27 CDT)
  • Ajasja LjubetiÄ� (Sat Apr 30 2011 - 02:29:35 CDT)
  • Moutusi Manna (Sat Apr 30 2011 - 01:43:55 CDT)
• save NAMD plot as a picture
  • John Stone (Thu Jun 19 2008 - 23:51:06 CDT)
  • S.K. Ghosh (Thu Jun 19 2008 - 14:00:30 CDT)
• Save pdb with original numbering
  • Ricardo Soares (Tue Nov 29 2011 - 18:58:56 CST)
  • Peter C. Lai (Tue Nov 29 2011 - 17:22:35 CST)
  • Ricardo Soares (Tue Nov 29 2011 - 13:25:16 CST)
  • Dong Luo (Tue Nov 29 2011 - 10:12:44 CST)
  • John Stone (Tue Nov 29 2011 - 10:25:22 CST)
  • Ricardo Soares (Tue Nov 29 2011 - 05:47:33 CST)
• Save position of entire molecule and draw it later
  • John Stone (Thu Aug 28 2014 - 14:14:45 CDT)
  • Ebert Maximilian (Thu Aug 28 2014 - 13:58:58 CDT)
  • John Stone (Thu Aug 28 2014 - 13:25:19 CDT)
  • Ebert Maximilian (Thu Aug 28 2014 - 10:37:34 CDT)
• save psf
  • Ekta Khurana (Thu Feb 19 2004 - 16:44:16 CST)
• save selected residues
  • Axel Kohlmeyer (Mon Aug 11 2008 - 11:01:48 CDT)
  • bo baker (Mon Aug 11 2008 - 06:31:12 CDT)
  • Axel Kohlmeyer (Sun Aug 10 2008 - 09:48:15 CDT)
  • bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
• Save specific atoms from multiple frame pdb
  • John Stone (Thu Nov 08 2018 - 21:47:29 CST)
  • John Stone (Wed Nov 07 2018 - 14:34:53 CST)
  • Abhik Ghosh Moulick (Wed Nov 07 2018 - 01:33:10 CST)
• Save State Fails
  • Andrew Dalke (Thu Jul 23 2009 - 13:11:46 CDT)
  • Leonardo Trabuco (Wed Jul 22 2009 - 00:52:57 CDT)
  • Carmen Valladares (Tue Jul 21 2009 - 18:57:00 CDT)
  • Cojocaru,Vlad (Thu Aug 02 2007 - 13:41:29 CDT)
  • Axel Kohlmeyer (Thu Aug 02 2007 - 10:40:25 CDT)
  • Vlad Cojocaru (Thu Aug 02 2007 - 10:09:12 CDT)
  • Vlad Cojocaru (Thu Aug 02 2007 - 10:20:03 CDT)
• Save state miss some parameters !
  • John Stone (Tue Sep 24 2002 - 09:36:49 CDT)
  • Stéphane Teletchéa (Tue Sep 24 2002 - 06:55:50 CDT)
• save states with relative directory structure
  • Axel Kohlmeyer (Wed Oct 20 2004 - 11:15:27 CDT)
  • John Stone (Wed Oct 20 2004 - 09:40:09 CDT)
  • Marc Q. Ma (Wed Oct 20 2004 - 08:00:23 CDT)
• save the secondary structure and rmsd
  • John Stone (Mon Oct 18 2021 - 12:17:09 CDT)
  • Runak R (Fri Oct 08 2021 - 10:18:17 CDT)
• Save thousands... no one will know
  • Olivia Reilly (Sat Mar 07 2009 - 11:23:52 CST)
• Save trr using command line
  • Steven Neumann (Tue Apr 16 2013 - 05:31:18 CDT)
• save waters around ligand trajectory updated
  • Laura Lopez Munoz (Fri May 31 2013 - 01:17:12 CDT)
• Save work in the middle of chirality correction
  • jrhau lung (Wed Oct 05 2016 - 20:17:05 CDT)
  • jrhau lung (Wed Oct 05 2016 - 08:09:47 CDT)
  • John Stone (Mon Oct 03 2016 - 15:46:18 CDT)
  • jrhau lung (Mon Oct 03 2016 - 09:33:48 CDT)
  • jrhau lung (Mon Oct 03 2016 - 09:17:18 CDT)
  • jrhau lung (Fri Sep 30 2016 - 17:32:37 CDT)
  • Ryan McGreevy (Fri Sep 30 2016 - 11:39:04 CDT)
  • jrhau lung (Fri Sep 30 2016 - 02:35:43 CDT)
• save/load visualization for data file
  • Vermaas, Josh (Mon Mar 18 2024 - 08:32:26 CDT)
  • é�³å¿ƒç‘¶ (Sun Mar 17 2024 - 07:40:35 CDT)
• Save/restore display parameters
  • John Stone (Mon May 07 2012 - 10:40:59 CDT)
  • Jérôme Hénin (Fri May 04 2012 - 09:51:28 CDT)
• save_state
  • John Stone (Thu Jan 30 2003 - 13:28:24 CST)
• Save_state and Load_state
  • John Stone (Fri May 02 2003 - 10:04:44 CDT)
  • Jill Vickery (Thu May 01 2003 - 12:05:00 CDT)
• saving a GMX trajectory using tcl script
  • John Stone (Thu Jun 17 2010 - 14:43:00 CDT)
  • Rabab Toubar (Wed Jun 16 2010 - 07:21:00 CDT)
• saving a PDB in a different order than it was loaded
  • Ryan Woltz (Fri May 03 2024 - 11:21:01 CDT)
  • Josh Vermaas (Fri May 03 2024 - 11:12:21 CDT)
  • Diego Gomes (Fri May 03 2024 - 10:38:56 CDT)
  • Axel Kohlmeyer (Thu May 02 2024 - 22:30:44 CDT)
  • Ryan Woltz (Thu May 02 2024 - 21:30:39 CDT)
• saving a tiff file
  • Dr. Daniel James White PhD (Wed Dec 18 2002 - 05:16:45 CST)
  • John Stone (Tue Dec 17 2002 - 16:36:56 CST)
  • Robert Brunner (Mon Dec 16 2002 - 20:01:02 CST)
  • John Stone (Mon Dec 16 2002 - 17:43:51 CST)
  • Marcela Madrid (Mon Dec 16 2002 - 15:01:30 CST)
• saving bond-length information
  • Axel Kohlmeyer (Thu Sep 11 2003 - 06:36:48 CDT)
  • Karsten Suhre (Thu Sep 11 2003 - 04:51:47 CDT)
• saving charges
  • Axel Kohlmeyer (Mon Sep 08 2008 - 14:13:46 CDT)
  • snoze pa (Mon Sep 08 2008 - 12:14:15 CDT)
• saving charges in the B column
  • Leonardo Trabuco (Sat Sep 09 2006 - 18:09:38 CDT)
  • Axel Kohlmeyer (Fri Sep 08 2006 - 19:27:52 CDT)
  • L. Michel Espinoza-Fonseca (Fri Sep 08 2006 - 18:53:11 CDT)
• saving coordinates of expanded cell
  • John Stone (Tue May 02 2006 - 10:44:20 CDT)
  • James Rustad (Tue May 02 2006 - 10:36:26 CDT)
• Saving coordinates that meet selection criteria for each frame
  • Wang Yi (Tue Apr 17 2012 - 19:23:15 CDT)
  • Axel Kohlmeyer (Tue Apr 17 2012 - 19:20:56 CDT)
  • Ben Rodriguez (Tue Apr 17 2012 - 18:28:43 CDT)
• saving dcd file different if by script or by interactive mode
  • Kei Sit (Tue Apr 10 2012 - 19:24:56 CDT)
  • Axel Kohlmeyer (Tue Apr 10 2012 - 18:16:03 CDT)
  • Jose Borreguero (Tue Apr 10 2012 - 18:23:01 CDT)
  • Jose Borreguero (Tue Apr 10 2012 - 17:32:11 CDT)
• saving dcd with less frames
  • Bjoern Olausson (Tue Jun 07 2011 - 05:27:58 CDT)
  • Axel Kohlmeyer (Tue Jun 07 2011 - 05:08:17 CDT)
  • Joyce Tan (Tue Jun 07 2011 - 04:39:35 CDT)
• Saving ionized.psf from add ions plug in of VMD
  • Andrea Holfelder (Wed Aug 31 2011 - 14:27:04 CDT)
  • Axel Kohlmeyer (Wed Aug 31 2011 - 11:34:08 CDT)
  • Andrea Holfelder (Wed Aug 31 2011 - 10:35:45 CDT)
• saving macros
  • Axel Kohlmeyer (Wed Nov 02 2005 - 08:43:58 CST)
  • Anna Modzelewska (Wed Nov 02 2005 - 05:35:09 CST)
• Saving mol2 file
  • Peter Freddolino (Wed Apr 18 2007 - 11:00:26 CDT)
  • Atila Iamarino (Wed Apr 18 2007 - 10:50:57 CDT)
  • Peter Freddolino (Mon Apr 16 2007 - 12:48:18 CDT)
  • Atila Iamarino (Mon Apr 16 2007 - 12:36:00 CDT)
• Saving mutli-molecule structures in VMD (e.g., for building membranes)
  • Axel Kohlmeyer (Mon Feb 05 2007 - 12:09:15 CST)
  • Cesar Luis Avila (Mon Feb 05 2007 - 09:11:38 CST)
  • wolfinbm_at_uci.edu (Sun Feb 04 2007 - 22:20:41 CST)
• Saving of pdb-trajectory in NMR-like format
  • James Starlight (Tue Apr 17 2012 - 09:21:40 CDT)
• saving trajectories from the command line
  • Axel Kohlmeyer (Thu Oct 16 2008 - 09:11:17 CDT)
  • Jim Pfaendtner (Thu Oct 16 2008 - 07:28:00 CDT)
• Saving two molecules into one PDB file
  • John Stone (Fri Aug 16 2002 - 13:44:32 CDT)
  • Reinhard Klement (Fri Aug 16 2002 - 09:41:54 CDT)
• Saving updated trajectory coordinates of selected atoms
  • Axel Kohlmeyer (Mon Nov 16 2020 - 09:02:07 CST)
  • SHRAVANI NETHI . (Mon Nov 16 2020 - 08:04:04 CST)
  • Axel Kohlmeyer (Mon Nov 16 2020 - 07:42:46 CST)
  • SHRAVANI NETHI . (Mon Nov 16 2020 - 07:07:46 CST)
• Saving variable information
  • Murilo Kramar (Wed Jun 08 2016 - 15:49:45 CDT)
• saving velocities with VMD
  • Marcela Madrid (Sun Jan 21 2018 - 14:55:30 CST)
• Saving visualization state coordinates
  • John Stone (Sun Mar 15 2020 - 13:30:45 CDT)
  • Peter Mawanga (Fri Mar 13 2020 - 17:00:55 CDT)
  • Peter Mawanga (Fri Mar 13 2020 - 16:43:38 CDT)
  • Josh Vermaas (Fri Mar 13 2020 - 16:48:59 CDT)
  • Josh Vermaas (Fri Mar 13 2020 - 15:06:39 CDT)
  • Peter Mawanga (Fri Mar 13 2020 - 11:00:16 CDT)
• Saving work in VMD--this seems ridiculously difficult!
  • Axel Kohlmeyer (Fri Feb 09 2007 - 10:52:01 CST)
  • Cesar Luis Avila (Thu Feb 08 2007 - 20:53:30 CST)
  • John Stone (Thu Feb 08 2007 - 18:34:34 CST)
  • L. Michel Espinoza-Fonseca (Thu Feb 08 2007 - 17:13:52 CST)
  • wolfinbm_at_uci.edu (Thu Feb 08 2007 - 16:09:52 CST)
• sball.h not found
  • Luis Rosales (Sat Jun 25 2005 - 21:31:01 CDT)
  • Ignacio Rodriguez Fernandez (Sat Jun 25 2005 - 08:47:16 CDT)
• SBCG Bond/Angle Parameter Extraction Files
  • Tye Dwight Martin (Fri Jun 15 2012 - 17:28:59 CDT)
• SBCG membrane
  • Anton Arkhipov (Wed Dec 24 2008 - 15:01:38 CST)
  • Dolan, Michael (NIH/NIAID) [C] (Wed Dec 24 2008 - 11:59:25 CST)
• SBCG of molecules
  • Raman Preet Singh (Fri Dec 18 2020 - 11:50:00 CST)
  • Peter Freddolino (Fri Dec 18 2020 - 11:36:08 CST)
  • John Stone (Fri Dec 18 2020 - 10:43:13 CST)
  • Raman Preet Singh (Sat Dec 12 2020 - 12:29:43 CST)
• sbcg with multimers
  • Anton Arkhipov (Sun Jan 17 2010 - 23:37:48 CST)
  • Francesco Pietra (Wed Dec 30 2009 - 15:22:43 CST)
• SC'15 Sci viz showcase deadline extension
  • John Stone (Mon Jul 27 2015 - 10:59:14 CDT)
• scale angstroms to pixels (or mm, inches, etc.)
  • Lachele Foley (Mon Mar 06 2017 - 07:55:01 CST)
• Scale the molecule
  • spandu K (Wed Oct 15 2014 - 03:21:57 CDT)
• scale trajectory coords
  • Axel Kohlmeyer (Wed May 21 2008 - 22:58:01 CDT)
  • Peter Jones (Wed May 21 2008 - 22:28:35 CDT)
• scan interleaved stereo on Zalman M220W monitor
  • John Stone (Tue Jul 14 2009 - 13:25:50 CDT)
  • Sinan Arslan (Tue Jul 14 2009 - 13:11:39 CDT)
• Scan Torsions
  • Giacomo Fiorin (Thu May 24 2018 - 08:33:37 CDT)
  • Peter Freddolino (Wed May 23 2018 - 22:07:13 CDT)
  • McGuire, Kelly (Wed May 23 2018 - 21:19:54 CDT)
  • Vermaas, Joshua (Wed May 23 2018 - 16:39:44 CDT)
  • McGuire, Kelly (Wed May 23 2018 - 13:28:01 CDT)
• sched_setaffinity error message when using srun to give VMD only a portion of the cores on a node [SOLVED]
  • Neale, Christopher Andrew (Tue Apr 12 2022 - 10:52:15 CDT)
• School on Molecular Dynamics and Enhanced Sampling Methods @ Temple University July 6-10, 2015
  • Axel Kohlmeyer (Fri May 08 2015 - 11:29:01 CDT)
• School on Molecular Dynamics with NAMD and LAMMPS in Philadelphia, August 18-22 2014
  • Axel Kohlmeyer (Thu Jul 17 2014 - 14:48:17 CDT)
• scipt for loading multiple copies in psfgen
  • Prof. Eddie (Tue Sep 29 2015 - 12:59:40 CDT)
• Screen corruption
  • John Stone (Wed Dec 15 2004 - 08:57:05 CST)
  • Sylvain EDALEINE (Wed Dec 15 2004 - 04:16:22 CST)
• screen size
  • John Stone (Mon Sep 19 2005 - 10:41:28 CDT)
  • Jeffrey Tseng (Sat Sep 17 2005 - 10:12:41 CDT)
  • Jeffrey Tseng (Sat Sep 17 2005 - 09:47:31 CDT)
  • John Stone (Fri Sep 16 2005 - 21:08:55 CDT)
  • Jeffrey Tseng (Fri Sep 16 2005 - 18:09:39 CDT)
• script
  • Axel Kohlmeyer (Mon Aug 08 2011 - 22:37:15 CDT)
  • KIRTANA S (Mon Aug 08 2011 - 16:09:45 CDT)
  • KIRTANA S (Mon Jul 18 2011 - 13:20:52 CDT)
  • Ajasja LjubetiÄ� (Tue Jul 12 2011 - 13:01:26 CDT)
  • Axel Kohlmeyer (Tue Jul 12 2011 - 11:58:55 CDT)
  • Ajasja LjubetiÄ� (Tue Jul 12 2011 - 12:08:12 CDT)
  • KIRTANA S (Tue Jul 12 2011 - 11:12:41 CDT)
  • Axel Kohlmeyer (Wed Jul 06 2011 - 19:01:31 CDT)
  • KIRTANA S (Wed Jul 06 2011 - 17:04:29 CDT)
  • Sergio Anis (Tue Sep 06 2005 - 07:11:50 CDT)
• Script commands that control the display of periodic images
  • Axel Kohlmeyer (Sat Feb 08 2014 - 22:52:38 CST)
  • Eric Smoll (Sat Feb 08 2014 - 21:46:40 CST)
• SCRIPT directory...
  • gianluca santarossa (Thu Jan 16 2003 - 04:10:48 CST)
  • John Stone (Wed Jan 15 2003 - 11:47:47 CST)
  • Sanjeev B.S. (Wed Jan 15 2003 - 11:46:56 CST)
• script error
  • John Stone (Fri Oct 02 2015 - 10:10:56 CDT)
  • Nikhil Maroli (Fri Oct 02 2015 - 08:44:13 CDT)
  • Axel Kohlmeyer (Tue Sep 01 2009 - 12:55:26 CDT)
  • Negar Ashari Astani (Tue Sep 01 2009 - 11:58:32 CDT)
• Script for Angular Distribution Function?
  • Axel Kohlmeyer (Wed Dec 07 2011 - 10:48:47 CST)
  • Dudo (Tue Dec 06 2011 - 10:30:41 CST)
  • David Cohen-Tanugi (Tue Dec 06 2011 - 09:45:36 CST)
• script for area per lipid
  • Ajeeta kaushiki (Tue Mar 09 2010 - 05:04:27 CST)
  • Demet Akten (Mon Mar 08 2010 - 06:39:16 CST)
• script for atom collisions
  • Kailee (Fri Jun 15 2007 - 12:21:13 CDT)
  • John Stone (Wed Jun 13 2007 - 03:01:10 CDT)
  • Kailee (Tue Jun 12 2007 - 08:58:36 CDT)
  • John Stone (Mon Jun 11 2007 - 15:35:55 CDT)
  • Kailee (Mon Jun 11 2007 - 12:10:30 CDT)
• Script for automated selection
  • Andrea Carotti (Wed Jun 22 2005 - 03:28:54 CDT)
  • Axel Kohlmeyer (Mon Jun 20 2005 - 12:58:41 CDT)
  • Blake Charlebois (Mon Jun 20 2005 - 12:28:39 CDT)
  • Andrea Carotti (Mon Jun 20 2005 - 09:38:51 CDT)
• Script for calculating energy of a water molecule
  • Jindal Shah (Wed Aug 17 2005 - 17:07:12 CDT)
  • John Stone (Wed Aug 17 2005 - 14:32:41 CDT)
  • Jindal Shah (Wed Aug 17 2005 - 11:41:23 CDT)
• Script for calculating hydrogen-bonding energy
  • Jianping Lin (Thu Mar 05 2009 - 19:19:28 CST)
• Script for contact Vs Freq
  • Mi Yang (Thu Oct 21 2021 - 12:41:06 CDT)
• Script for counting water molecules
  • Joshua Adelman (Mon Nov 08 2010 - 15:26:02 CST)
  • aneesh cna (Mon Nov 08 2010 - 07:06:33 CST)
• script for cutting box
  • John Stone (Wed Mar 29 2006 - 10:24:32 CST)
  • John Stone (Wed Mar 29 2006 - 09:48:05 CST)
• script for displaying multiple frames
  • Maxim Belkin (Thu Feb 19 2015 - 15:10:19 CST)
  • James Kress (Thu Feb 19 2015 - 12:23:51 CST)
  • Stefan Doerr (Thu Feb 19 2015 - 07:57:12 CST)
  • jing liang (Thu Feb 19 2015 - 07:26:17 CST)
• Script for Finding Point Group Symmetry of Molecule and Saving the Ideal coordinate
  • Shivang Agarwal (Sat Sep 26 2020 - 00:31:16 CDT)
• script for generating stereo postscript images
  • John Stone (Fri Feb 11 2000 - 15:55:06 CST)
  • Charles_at_Schwieters.org (Fri Feb 11 2000 - 14:53:32 CST)
• Script for Lipid Order Parameter
  • Ricardo Soares (Wed Jun 27 2012 - 13:58:58 CDT)
• script for mapping the electrostatic potential from APBS on surfaces
  • Vlad Cojocaru (Wed Jan 26 2005 - 10:01:02 CST)
  • John Stone (Wed Jan 26 2005 - 09:38:50 CST)
  • Vlad Cojocaru (Wed Jan 26 2005 - 03:58:37 CST)
• script for multiple structure superimposition?
  • John Stone (Thu May 04 2006 - 16:58:04 CDT)
  • Shirley Li (Thu May 04 2006 - 16:48:33 CDT)
• script for plotting trajectories
  • Aris Marcolongo (Mon Oct 26 2015 - 17:42:25 CDT)
  • Axel Kohlmeyer (Mon Oct 26 2015 - 17:37:04 CDT)
  • Aris Marcolongo (Mon Oct 26 2015 - 17:25:40 CDT)
  • Aris Marcolongo (Mon Oct 26 2015 - 17:04:21 CDT)
  • Axel Kohlmeyer (Mon Oct 26 2015 - 17:10:41 CDT)
  • Axel Kohlmeyer (Mon Oct 26 2015 - 15:39:37 CDT)
  • Aris Marcolongo (Mon Oct 26 2015 - 15:06:07 CDT)
  • Aris Marcolongo (Mon Oct 26 2015 - 06:02:27 CDT)
• script for projection of c-alpha atom cordinates on xy plane
  • PaweÅ‚ KÄ™dzierski (Tue Mar 22 2011 - 08:19:14 CDT)
  • Mark Cunningham (Tue Mar 22 2011 - 07:56:34 CDT)
  • ban arn (Tue Mar 22 2011 - 05:00:42 CDT)
  • PaweÅ‚ KÄ™dzierski (Tue Mar 22 2011 - 04:11:53 CDT)
  • Mark Cunningham (Mon Mar 21 2011 - 13:56:12 CDT)
  • J. Rui Rodrigues (Mon Mar 21 2011 - 12:12:28 CDT)
  • ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
  • PaweÅ‚ KÄ™dzierski (Fri Mar 18 2011 - 15:17:31 CDT)
  • Ajasja LjubetiÄ� (Fri Mar 18 2011 - 15:23:12 CDT)
  • Joseph Bylund (Fri Mar 18 2011 - 13:39:37 CDT)
  • ban arn (Fri Mar 18 2011 - 12:58:19 CDT)
• Script for reading Gaussian 09 MD file?
  • Mayne, Christopher G (Wed Oct 10 2012 - 15:57:55 CDT)
  • John Keller (Wed Oct 10 2012 - 14:50:00 CDT)
  • John Stone (Wed Oct 10 2012 - 14:53:19 CDT)
  • John Stone (Wed Oct 10 2012 - 14:40:45 CDT)
  • John Keller (Fri Oct 05 2012 - 17:06:49 CDT)
• Script for recursive file execution
  • debra ragland (Fri Jul 31 2015 - 11:48:10 CDT)
• script for size distribution
  • Axel Kohlmeyer (Wed Jul 17 2013 - 02:26:41 CDT)
  • niladri patra (Tue Jul 16 2013 - 10:53:29 CDT)
• script hangs when use full dcd file
  • Irene Newhouse (Fri Jan 25 2008 - 14:56:47 CST)
  • John Stone (Fri Jan 25 2008 - 14:32:42 CST)
  • Irene Newhouse (Fri Jan 25 2008 - 14:14:53 CST)
• Script Modification to Print Phi and Psi Angles
  • Geist, Norman (Wed Jun 08 2022 - 00:19:52 CDT)
  • Roni Saiba (Tue Jun 07 2022 - 02:08:34 CDT)
  • Geist, Norman (Tue Jun 07 2022 - 01:01:55 CDT)
  • Geist, Norman (Tue Jun 07 2022 - 00:59:28 CDT)
  • Oscar Bastidas (Mon Jun 06 2022 - 23:12:08 CDT)
• script no reading correct number of frames
  • John Stone (Thu Jan 12 2006 - 10:07:41 CST)
  • syma (Thu Jan 12 2006 - 10:03:02 CST)
• script problem
  • Mark M Huntress (Thu Mar 31 2011 - 15:32:33 CDT)
  • John Stone (Thu Mar 31 2011 - 15:39:01 CDT)
  • J. Rui Rodrigues (Thu Mar 12 2009 - 07:01:30 CDT)
  • Peter Freddolino (Thu Mar 12 2009 - 07:07:14 CDT)
  • J. Rui Rodrigues (Thu Mar 12 2009 - 06:16:17 CDT)
  • Christopher Hartshorn (Thu Mar 12 2009 - 03:40:50 CDT)
  • John Stone (Fri Apr 30 2004 - 16:02:12 CDT)
  • Ioana Cozmuta (Thu Apr 29 2004 - 23:09:49 CDT)
• script rotation of system with graphics
  • Josh Vermaas (Thu Jul 09 2015 - 02:41:30 CDT)
  • Eric Smoll (Wed Jul 08 2015 - 19:17:50 CDT)
• Script runs slow afterwards
  • Ajasja LjubetiÄ� (Thu Aug 04 2016 - 03:31:05 CDT)
  • Sangkha Borah (Thu Aug 04 2016 - 00:56:43 CDT)
• script that reacts on movement of frameslider in vmd main
  • Benjamin Bouvier (Mon Dec 01 2008 - 09:28:55 CST)
  • Nadja Lederer (Mon Dec 01 2008 - 07:41:36 CST)
• Script to Build Cyclic Peptides
  • Bill McIntyre (Mon Oct 30 2023 - 10:58:32 CDT)
  • Vermaas, Josh (Mon Oct 30 2023 - 07:39:24 CDT)
  • Bill McIntyre (Sat Oct 28 2023 - 18:13:51 CDT)
  • Vermaas, Josh (Fri Oct 27 2023 - 17:15:02 CDT)
  • Patrick Charchar (Thu Oct 26 2023 - 19:02:23 CDT)
  • Patrick Charchar (Thu Oct 26 2023 - 17:31:26 CDT)
  • Josh (Thu Oct 26 2023 - 13:53:06 CDT)
  • Bill McIntyre (Thu Oct 26 2023 - 12:34:12 CDT)
  • Josh (Wed Oct 25 2023 - 09:01:37 CDT)
  • Bill McIntyre (Wed Oct 25 2023 - 06:20:02 CDT)
  • Vermaas, Josh (Tue Oct 24 2023 - 08:29:48 CDT)
  • Bill McIntyre (Tue Oct 24 2023 - 00:52:02 CDT)
  • Josh (Mon Oct 23 2023 - 07:57:20 CDT)
  • Bill McIntyre (Sun Oct 22 2023 - 17:38:30 CDT)
• script to calculate molecular surface area
  • latha (Wed Jul 28 2010 - 12:46:23 CDT)
• script to change representaiton
  • John Stone (Thu Mar 30 2006 - 17:55:05 CST)
  • John Stone (Thu Mar 30 2006 - 17:24:24 CST)
  • Harindar Keer (Thu Mar 30 2006 - 16:37:49 CST)
• script to draw lines between labelled atoms
  • david MARTROU (Wed Nov 27 2013 - 07:30:07 CST)
  • david MARTROU (Wed Nov 27 2013 - 05:26:21 CST)
• Script to generate PSF: ERROR, additional atoms
  • Ashar Malik (Wed Jun 08 2016 - 15:31:40 CDT)
  • Francesco Greco (Wed Jun 08 2016 - 07:52:42 CDT)
• Script to impose coordinates from separate file onto equivalent selection of atoms
  • Martin, Erik W (Thu Mar 26 2015 - 12:53:29 CDT)
  • zoran (Thu Mar 26 2015 - 10:59:07 CDT)
  • Josh Vermaas (Thu Mar 26 2015 - 08:27:33 CDT)
  • Sam Wallace (Thu Mar 26 2015 - 07:21:43 CDT)
• script to load dcds from Replica Exchange simulations by Temperature
  • Ana Celia Araujo Vila Verde (Mon Jan 15 2007 - 17:30:44 CST)
• script to modify cysteines with spinlabel
  • Ajasja LjubetiÄ� (Tue Jan 24 2012 - 13:35:22 CST)
  • Anna Kuznetsova (Mon Jan 23 2012 - 14:55:50 CST)
• script to read dcd frame-at-a-time & write a selection
  • Irene Newhouse (Tue Mar 25 2008 - 00:11:29 CDT)
  • Irene Newhouse (Mon Mar 24 2008 - 20:07:20 CDT)
  • Irene Newhouse (Mon Mar 24 2008 - 20:19:06 CDT)
  • Axel Kohlmeyer (Mon Mar 24 2008 - 20:07:35 CDT)
  • Axel Kohlmeyer (Mon Mar 24 2008 - 19:53:36 CDT)
  • Axel Kohlmeyer (Mon Mar 24 2008 - 19:22:30 CDT)
  • Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
  • Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
  • Irene Newhouse (Mon Mar 24 2008 - 17:16:39 CDT)
• Script to rendering ANISOU records in VMD
  • Axel Kohlmeyer (Tue Jun 19 2007 - 22:08:55 CDT)
  • Aaron Oakley (Tue Jun 19 2007 - 21:22:51 CDT)
• script to resolve trajectory "jumps" on Desmond dynamic
  • Peter Freddolino (Thu Mar 05 2009 - 10:43:18 CST)
  • Nicola Giacche' (Thu Mar 05 2009 - 09:01:08 CST)
  • Brittany Morgan (Wed Mar 04 2009 - 11:21:13 CST)
  • Nicola Giacche' (Wed Mar 04 2009 - 10:15:03 CST)
• script to visualize NMR constrains?
  • John Stone (Fri Mar 23 2007 - 14:06:02 CDT)
  • Marcela Madrid (Fri Mar 23 2007 - 13:45:46 CDT)
• scriptable way to add hydrogens
  • Axel Kohlmeyer (Sat Jan 31 2009 - 17:35:53 CST)
  • Peter Freddolino (Sat Jan 31 2009 - 16:44:37 CST)
  • Thomas Evangelidis (Sat Jan 31 2009 - 16:25:16 CST)
• Scripting API: are arguments to representation types documented somewhere?
  • Ajasja LjubetiÄ� (Mon Aug 20 2012 - 07:34:55 CDT)
  • Axel Kohlmeyer (Mon Aug 20 2012 - 07:15:52 CDT)
  • Jan-Philip Gehrcke (Mon Aug 20 2012 - 06:24:17 CDT)
  • Jan-Philip Gehrcke (Tue Jul 24 2012 - 07:58:04 CDT)
• scripting bond labeling
  • Axel Kohlmeyer (Sat Jun 30 2012 - 10:32:04 CDT)
  • Prof. Eddie (Sat Jun 30 2012 - 09:29:50 CDT)
  • Axel Kohlmeyer (Wed Jun 13 2012 - 17:47:25 CDT)
  • Prof. Eddie (Wed Jun 13 2012 - 16:44:18 CDT)
• Scripting problem with h-bond listing
  • Sanjeev (Mon Mar 19 2007 - 04:36:05 CDT)
  • Axel Kohlmeyer (Sun Mar 18 2007 - 15:03:09 CDT)
  • Sanjeev (Sun Mar 18 2007 - 14:16:42 CDT)
  • John Stone (Sun Mar 18 2007 - 01:54:15 CDT)
  • Sanjeev (Sun Mar 18 2007 - 01:30:53 CDT)
• Scripting with volumes
  • Bassam Haddad (Fri Jul 26 2019 - 15:19:02 CDT)
  • Giacomo Fiorin (Fri Jul 26 2019 - 07:08:42 CDT)
  • Bassam Haddad (Thu Jul 25 2019 - 16:45:32 CDT)
• scripts CGTools
  • Axel Kohlmeyer (Fri Feb 18 2011 - 07:25:44 CST)
  • menica dibenedetto (Fri Feb 18 2011 - 05:11:05 CST)
• scripts for binding free energy calculation using SMD and Jarzynski's equality
  • Marc Q. Ma (Wed Aug 17 2005 - 09:45:12 CDT)
• scripts in windows version
  • John Stone (Wed Jan 17 2007 - 15:08:24 CST)
  • Axel Kohlmeyer (Wed Jan 17 2007 - 14:47:48 CST)
  • John Stone (Wed Jan 17 2007 - 12:01:20 CST)
  • wurl (Tue Jan 16 2007 - 19:31:40 CST)
• Scripts to color amino acids based on given properties
  • Y Xu (Wed Mar 21 2001 - 08:22:31 CST)
• scripts to generate initial boxes of solvents
  • Francesco Pietra (Tue Jul 07 2020 - 01:58:10 CDT)
  • Francesco Pietra (Tue Jul 07 2020 - 01:01:15 CDT)
  • Peter Freddolino (Tue Jul 07 2020 - 00:00:06 CDT)
  • Francesco Pietra (Mon Jul 06 2020 - 11:57:16 CDT)
  • Francesco Pietra (Mon Jul 06 2020 - 11:09:14 CDT)
• Scripts to unwrap PBC from REMD trajectory
  • Bob Johnson (Fri Mar 16 2007 - 09:05:18 CDT)
  • Olaf Lenz (Fri Mar 16 2007 - 03:57:59 CDT)
  • Olaf Lenz (Fri Mar 16 2007 - 02:52:57 CDT)
  • Bob Johnson (Thu Mar 15 2007 - 16:08:50 CDT)
• scrolling up in vmd console
  • John Stone (Mon May 22 2006 - 15:18:01 CDT)
  • Kenley Barrett (Sun May 21 2006 - 13:37:04 CDT)
• SDS molecules agglomeration.
  • Ashar Malik (Tue Feb 18 2020 - 11:21:52 CST)
  • Josh Vermaas (Tue Feb 18 2020 - 08:59:16 CST)
  • Mikhail Suyetin (Tue Feb 18 2020 - 03:02:38 CST)
• Search options within mailing list
  • Jan-Philip Gehrcke (Tue Jul 24 2012 - 14:19:11 CDT)
  • John Stone (Tue Jul 24 2012 - 13:36:38 CDT)
  • Monika Madhavi (Tue Jul 24 2012 - 13:22:02 CDT)
• search path and naming conventions for custom TCL scripts
  • Eduard Schreiner (Wed May 03 2006 - 12:35:15 CDT)
  • Axel Kohlmeyer (Wed May 03 2006 - 10:29:29 CDT)
  • John Stone (Wed May 03 2006 - 10:12:03 CDT)
  • Enzo Vitale (Wed May 03 2006 - 09:13:42 CDT)
• searching for contact atomh
  • sunyeping (Wed Sep 11 2013 - 01:35:13 CDT)
• Searching for Number of Resname
  • Roman Petrenko (Thu Mar 26 2009 - 15:28:00 CDT)
  • Giovanni Bellesia (Thu Mar 26 2009 - 15:16:25 CDT)
  • Ocar Campos (Thu Mar 26 2009 - 15:21:28 CDT)
  • Ocar Campos (Thu Mar 26 2009 - 14:51:44 CDT)
• Second Announcement: ‘Hands On’ Workshop on Computational Biophysics (Berkeley, CA, Aug 3-7, 2015)
  • Lela Vukovic (Tue Jun 16 2015 - 12:04:27 CDT)
• Secondary structure
  • Robert Campbell (Fri Aug 23 2002 - 12:13:44 CDT)
  • Justin Gullingsrud (Fri Aug 23 2002 - 09:49:03 CDT)
  • Mark Hilge (Fri Aug 23 2002 - 09:18:52 CDT)
  • Barry Isralewitz (Tue Dec 11 2001 - 11:46:33 CST)
  • Nikolai Smolin (Tue Dec 11 2001 - 07:45:20 CST)
• Secondary Structure along a trajectory
  • John Stone (Thu Apr 27 2006 - 11:12:29 CDT)
  • L. Michel Espinoza-Fonseca (Thu Apr 27 2006 - 10:30:29 CDT)
  • Arneh Babakhani (Wed Apr 26 2006 - 18:44:21 CDT)
• Secondary structure analysis
  • Bennion, Brian (Wed Oct 24 2012 - 14:32:32 CDT)
  • ngpntm_at_gmail.com (Wed Oct 24 2012 - 05:44:33 CDT)
• Secondary structure assignment
  • sajad falsafi (Wed Feb 22 2012 - 01:39:07 CST)
  • Peter C. Lai (Wed Feb 22 2012 - 00:31:39 CST)
  • Zhuyi Xue (Tue Feb 21 2012 - 21:24:14 CST)
  • John Stone (Mon Jul 17 2006 - 16:01:54 CDT)
  • Melquiond (Mon Jul 17 2006 - 12:59:39 CDT)
  • John Stone (Mon Jul 17 2006 - 10:40:43 CDT)
  • Melquiond (Mon Jul 17 2006 - 09:23:03 CDT)
  • John Stone (Tue May 30 2006 - 17:01:24 CDT)
  • L. Michel Espinoza-Fonseca (Tue May 30 2006 - 16:53:51 CDT)
  • Axel Kohlmeyer (Mon May 15 2006 - 04:52:05 CDT)
  • Melquiond (Sun May 14 2006 - 15:34:43 CDT)
• secondary structure assingnment
  • John Stone (Tue Sep 20 2005 - 10:14:22 CDT)
  • Michel Espinoza-Fonseca (Tue Sep 20 2005 - 07:22:07 CDT)
• secondary structure calculation
  • Axel Kohlmeyer (Thu Mar 29 2012 - 08:01:38 CDT)
  • Ban Arn (Thu Mar 29 2012 - 05:05:38 CDT)
  • Ban Arn (Wed Mar 28 2012 - 04:47:27 CDT)
  • Axel Kohlmeyer (Tue Mar 27 2012 - 15:26:26 CDT)
  • Barry Isralewitz (Tue Mar 27 2012 - 12:44:38 CDT)
  • Ban Arn (Tue Mar 27 2012 - 11:55:24 CDT)
• secondary structure calculation at certain frame
  • Anjela Manandhar (Tue Jul 08 2014 - 12:32:50 CDT)
• secondary structure calculations
  • Bennion, Brian (Sat Oct 13 2012 - 23:03:19 CDT)
  • Joaquim Rui de Castro Rodrigues (Sat Oct 13 2012 - 14:38:36 CDT)
  • Bennion, Brian (Fri Oct 12 2012 - 11:27:25 CDT)
  • Joaquim Rui de Castro Rodrigues (Fri Oct 12 2012 - 07:30:52 CDT)
  • Mayne, Christopher G (Thu Oct 11 2012 - 19:37:59 CDT)
  • Bennion, Brian (Thu Oct 11 2012 - 18:16:25 CDT)
• Secondary Structure Color Definitions
  • Mark Formaneck (Mon Aug 22 2005 - 12:55:06 CDT)
  • John Stone (Mon Aug 22 2005 - 11:00:12 CDT)
  • Mark Formaneck (Sun Aug 21 2005 - 19:17:11 CDT)
• secondary structure colors in timeline plugin
  • Axel Kohlmeyer (Fri Sep 14 2007 - 07:46:50 CDT)
  • cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 07:51:31 CDT)
  • cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 06:24:30 CDT)
• Secondary Structure Depiction
  • Axel Kohlmeyer (Tue Apr 21 2009 - 14:07:41 CDT)
  • Daniel Gaston (Tue Apr 21 2009 - 12:01:08 CDT)
  • Daniel Gaston (Tue Apr 21 2009 - 12:02:29 CDT)
  • Axel Kohlmeyer (Tue Apr 21 2009 - 11:23:10 CDT)
  • John Stone (Tue Apr 21 2009 - 10:51:48 CDT)
  • George Madalin Giambasu (Tue Apr 21 2009 - 11:12:54 CDT)
  • Daniel Gaston (Tue Apr 21 2009 - 10:29:03 CDT)
  • L. Michel Espinoza-Fonseca (Tue Apr 21 2009 - 10:33:50 CDT)
  • Daniel Gaston (Tue Apr 21 2009 - 09:25:08 CDT)
• Secondary Structure Disappears after Molecule Move
  • John Stone (Mon May 16 2011 - 10:30:25 CDT)
  • Qmer_AN?= (Mon May 16 2011 - 05:45:21 CDT)
• Secondary structure elements in VMD
  • Ajasja LjubetiÄ� (Sat Nov 05 2011 - 03:00:01 CDT)
  • Rabab Toubar (Sat Nov 05 2011 - 00:38:29 CDT)
  • harish vashisth (Fri Nov 04 2011 - 19:37:43 CDT)
  • Rabab Toubar (Fri Nov 04 2011 - 16:03:26 CDT)
• secondary structure inconsistency
  • Charles Greenberg (Thu Apr 03 2014 - 12:48:16 CDT)
  • John Stone (Thu Apr 03 2014 - 11:03:39 CDT)
  • Charles Greenberg (Wed Apr 02 2014 - 12:39:33 CDT)
• Secondary Structure Issue
  • John Stone (Wed Jul 18 2012 - 09:57:28 CDT)
  • John Stone (Thu Jul 12 2012 - 10:24:08 CDT)
  • Sarah Richards (Fri Jul 06 2012 - 08:16:04 CDT)
• secondary structure new cartoon presentation
  • CPMAS Chen (Sun Jan 21 2018 - 08:55:56 CST)
• Secondary structure not being rendered for 1O82
  • Simon Dürr (Fri Mar 30 2018 - 04:56:50 CDT)
• secondary structure of a protein containing non-canonical residues
  • Arash Firouzbakht (Tue Apr 06 2021 - 09:59:48 CDT)
• Secondary Structure of alkane polymers
  • Axel Kohlmeyer (Mon Jan 24 2011 - 21:27:07 CST)
  • Axel Kohlmeyer (Mon Jan 24 2011 - 16:42:43 CST)
  • Manish Agarwal (Mon Jan 24 2011 - 17:48:07 CST)
  • Manish Agarwal (Mon Jan 24 2011 - 15:43:47 CST)
• Secondary structure representation stays static
  • Peter Mawanga (Mon Aug 27 2018 - 04:41:46 CDT)
  • Jérôme Hénin (Mon Aug 27 2018 - 04:05:58 CDT)
  • Peter Mawanga (Mon Aug 27 2018 - 02:41:22 CDT)
• secondary structure script
  • Chitrak Gupta (Tue Jun 28 2016 - 20:38:47 CDT)
  • Qasim Pars (Tue Jun 28 2016 - 19:31:58 CDT)
• Secondary Structure Stays at the last frame
  • h9826299_at_hkusua.hku.hk (Wed Jan 18 2006 - 16:19:52 CST)
  • John Stone (Wed Jan 18 2006 - 16:04:52 CST)
  • h9826299_at_hkusua.hku.hk (Wed Jan 18 2006 - 15:22:41 CST)
• secondary structure update
  • Brian Bennion (Mon Nov 03 2003 - 11:19:28 CST)
  • Alan Wilter Sousa da Silva (Mon Nov 03 2003 - 04:16:27 CST)
  • John Stone (Fri Oct 31 2003 - 12:37:52 CST)
  • Brian Bennion (Fri Oct 31 2003 - 12:18:34 CST)
  • Justin Gullingsrud (Fri Oct 31 2003 - 11:09:39 CST)
  • Brian Bennion (Fri Oct 31 2003 - 10:12:40 CST)
  • John Stone (Fri Oct 31 2003 - 09:45:07 CST)
  • james tomomi macdonald (Fri Oct 31 2003 - 09:44:09 CST)
  • Jérôme Hénin (Fri Oct 31 2003 - 07:37:31 CST)
• Secondary structure with Timeline
  • Florentina Tofoleanu (Tue Dec 01 2009 - 12:18:05 CST)
  • John Stone (Tue Dec 01 2009 - 10:53:00 CST)
  • Florentina Tofoleanu (Thu Nov 26 2009 - 06:19:15 CST)
• secondary structure works on linux, it doesn't work on Mac in certain structures
  • John Stone (Mon Jul 08 2013 - 15:16:20 CDT)
  • Juan Felipe Ortiz (Sun Jul 07 2013 - 18:26:14 CDT)
  • Tristan Croll (Wed Jul 03 2013 - 23:50:03 CDT)
  • Juan Felipe Ortiz (Tue Jul 02 2013 - 11:24:06 CDT)
• secondary structure's display - problem
  • Anna Modzelewska (Thu Jan 12 2006 - 10:21:07 CST)
  • John Stone (Thu Jan 12 2006 - 10:12:47 CST)
  • Vlad Cojocaru (Thu Jan 12 2006 - 06:43:06 CST)
  • Anna Modzelewska (Thu Jan 12 2006 - 06:23:56 CST)
  • Vlad Cojocaru (Wed Jan 11 2006 - 10:08:27 CST)
  • John Stone (Wed Jan 11 2006 - 09:58:28 CST)
  • Vlad Cojocaru (Wed Jan 11 2006 - 09:25:01 CST)
  • Anna Modzelewska (Wed Jan 11 2006 - 09:03:28 CST)
  • Vlad Cojocaru (Tue Jan 10 2006 - 11:08:43 CST)
  • Anna Modzelewska (Tue Jan 10 2006 - 10:29:43 CST)
• secondary_struct script
  • John Stone (Wed Apr 18 2007 - 12:48:36 CDT)
  • alexandra.marques_at_fc.up.pt (Wed Apr 18 2007 - 11:28:43 CDT)
• Security problem?
  • John Stone (Fri Feb 21 2014 - 10:01:15 CST)
  • Olaf Lenz (Fri Feb 21 2014 - 03:20:39 CST)
  • Olaf Lenz (Fri Feb 21 2014 - 02:46:04 CST)
  • Cosseddu, Salvatore (Thu Feb 20 2014 - 10:44:37 CST)
  • Cosseddu, Salvatore (Thu Feb 20 2014 - 10:37:07 CST)
  • John Stone (Wed Feb 19 2014 - 09:16:06 CST)
  • Cosseddu, Salvatore (Wed Feb 19 2014 - 08:38:02 CST)
  • Cosseddu, Salvatore (Wed Feb 19 2014 - 08:24:26 CST)
  • Olaf Lenz (Wed Feb 19 2014 - 08:30:59 CST)
  • Olaf Lenz (Wed Feb 19 2014 - 06:01:26 CST)
• seeing ions
  • John Stone (Thu Jan 24 2002 - 13:23:46 CST)
• Seeking assistance
  • Pawel Kedzierski (Sat Dec 12 2020 - 12:34:37 CST)
  • John Stone (Sat Dec 12 2020 - 11:44:47 CST)
  • Pawel Kedzierski (Sat Dec 12 2020 - 11:27:04 CST)
  • Onur Alptürk (Sat Dec 12 2020 - 08:01:31 CST)
• seeking suggestion in simulation analysis for pore lining residues in channel protein
  • Yogesh Sharma (Sat Jul 11 2020 - 08:49:42 CDT)
• Segfault in VMD 1.9.4a38 in DrawMolItem::draw_volume_isosurface_points
  • John Stone (Fri Apr 03 2020 - 11:11:56 CDT)
  • FX (Fri Apr 03 2020 - 10:26:17 CDT)
  • John Stone (Fri Apr 03 2020 - 09:24:28 CDT)
  • FX (Fri Apr 03 2020 - 06:18:01 CDT)
• segfault using VMD 1.8.6 32-bit Linux and chromium 1.9
  • Chris Berthiaume (Tue Aug 26 2008 - 12:23:11 CDT)
  • John Stone (Mon Aug 25 2008 - 22:45:15 CDT)
  • Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
• segid & chain id
  • Francesco Pietra (Thu Mar 17 2011 - 11:05:17 CDT)
  • John Stone (Thu Mar 17 2011 - 10:10:25 CDT)
  • Francesco Pietra (Thu Mar 17 2011 - 02:27:23 CDT)
• segid and geometry script
  • Jan Saam (Wed Jun 25 2003 - 18:42:52 CDT)
  • Jan Saam (Wed Jun 25 2003 - 18:33:35 CDT)
  • Dominique Vlieghe (Wed Jun 25 2003 - 08:51:52 CDT)
• segid WT100 is longer than 4 characters allowed by psf format
  • Ramya Gamini (Wed Sep 16 2009 - 08:01:57 CDT)
  • Luca Gelisio (Wed Sep 16 2009 - 03:34:16 CDT)
• SEGMENT ID
  • Deepak Singh (Fri Oct 22 1999 - 09:30:09 CDT)
  • John Stone (Fri Oct 22 1999 - 09:21:01 CDT)
  • Deepak Singh (Tue Oct 19 1999 - 23:45:46 CDT)
• segment name limit with solvate and psfgen
  • L. Michel Espinoza-Fonseca (Sat Aug 19 2006 - 23:30:06 CDT)
  • Leonardo Trabuco (Sat Aug 19 2006 - 23:03:40 CDT)
  • Thomas Caulfield (Sat Aug 19 2006 - 22:35:55 CDT)
• Segmentation error!
  • Andrew Dalke (Wed Apr 09 1997 - 10:46:36 CDT)
  • Cheol Soon Lee (Wed Apr 09 1997 - 05:47:56 CDT)
  • Cheol Soon Lee (Wed Apr 09 1997 - 05:46:34 CDT)
• Segmentation fault
  • Ivan Gregoretti (Tue Mar 11 2014 - 12:42:31 CDT)
  • John Stone (Tue Mar 11 2014 - 12:02:14 CDT)
  • Axel Kohlmeyer (Tue Mar 11 2014 - 11:42:18 CDT)
  • Simon Etter (Tue Mar 11 2014 - 11:04:22 CDT)
  • John Stone (Tue Mar 11 2014 - 10:41:00 CDT)
  • Simon Etter (Tue Mar 11 2014 - 10:21:07 CDT)
  • Cosseddu, Salvatore (Tue Mar 11 2014 - 10:00:30 CDT)
  • Cosseddu, Salvatore (Tue Mar 11 2014 - 10:02:52 CDT)
  • John Stone (Tue Mar 11 2014 - 10:10:44 CDT)
  • Simon Etter (Tue Mar 11 2014 - 07:31:17 CDT)
• Segmentation fault (core dumped)
  • John Stone (Tue Aug 27 2013 - 11:31:32 CDT)
  • Yubo Fan (Mon Aug 26 2013 - 13:33:57 CDT)
  • Josh Vermaas (Thu Aug 01 2013 - 16:52:19 CDT)
  • Hailin Huang (Thu Aug 01 2013 - 15:03:59 CDT)
  • arun kumar (Fri Jun 08 2012 - 05:17:48 CDT)
  • Axel Kohlmeyer (Thu Jun 07 2012 - 08:42:51 CDT)
  • arun kumar (Thu Jun 07 2012 - 07:45:30 CDT)
  • Axel Kohlmeyer (Wed Jun 06 2012 - 08:19:58 CDT)
  • Axel Kohlmeyer (Tue Jun 05 2012 - 10:09:48 CDT)
  • John Stone (Tue Jun 05 2012 - 09:38:28 CDT)
  • arun kumar (Tue Jun 05 2012 - 09:01:03 CDT)
• Segmentation fault error only when executing command within script
  • John Stone (Fri Sep 25 2015 - 15:04:34 CDT)
  • Eric Smoll (Thu Sep 24 2015 - 21:15:28 CDT)
• segmentation fault error when trying to add bonds to Si3N4 crystal in vmd
  • John Stone (Fri Nov 22 2013 - 23:26:12 CST)
  • Mehdi Bakhshi (Mon Nov 18 2013 - 15:00:54 CST)
  • John Stone (Mon Nov 18 2013 - 12:15:49 CST)
  • Mehdi Bakhshi (Sat Nov 16 2013 - 23:37:46 CST)
• Segmentation fault on linux Fedora 11
  • Axel Kohlmeyer (Mon Sep 14 2009 - 14:45:02 CDT)
  • John Stone (Mon Sep 14 2009 - 14:08:35 CDT)
  • Rob (Sun Sep 13 2009 - 19:16:28 CDT)
• segmentation fault on OSX El capitan
  • Vermaas, Joshua V (Tue Jun 14 2016 - 18:35:32 CDT)
  • Peter Schmidtke (Tue Jun 14 2016 - 03:00:50 CDT)
• Segmentation fault when trying to load GROMACS trajectories
  • Arneh Babakhani (Mon Jun 12 2006 - 14:10:19 CDT)
  • John Stone (Mon Jun 12 2006 - 13:42:26 CDT)
  • Arneh Babakhani (Mon Jun 12 2006 - 11:47:06 CDT)
• segmentation fault with NAMDenergy
  • John Stone (Thu Apr 19 2012 - 20:59:32 CDT)
  • amin_at_imtech.res.in (Thu Apr 19 2012 - 20:12:53 CDT)
• segname field in pdb files
  • Albers, Thomas (Wed Sep 13 2017 - 11:22:25 CDT)
  • Vermaas, Joshua (Tue Sep 12 2017 - 17:00:33 CDT)
  • Goedde, Chris (Tue Sep 12 2017 - 15:46:09 CDT)
• segv in vmd upon opening a file
  • Axel Kohlmeyer (Wed Apr 01 2015 - 13:01:07 CDT)
  • John Stone (Wed Apr 01 2015 - 13:34:18 CDT)
  • Burlen Loring (Wed Apr 01 2015 - 13:46:17 CDT)
  • Burlen Loring (Wed Apr 01 2015 - 13:22:20 CDT)
  • Burlen Loring (Wed Apr 01 2015 - 12:09:34 CDT)
  • John Stone (Wed Apr 01 2015 - 11:51:58 CDT)
  • Axel Kohlmeyer (Wed Apr 01 2015 - 11:29:34 CDT)
  • John Stone (Wed Apr 01 2015 - 11:25:50 CDT)
  • Axel Kohlmeyer (Wed Apr 01 2015 - 10:51:25 CDT)
  • John Stone (Wed Apr 01 2015 - 09:51:15 CDT)
  • Burlen Loring (Wed Apr 01 2015 - 03:23:28 CDT)
  • John Stone (Tue Mar 31 2015 - 19:56:43 CDT)
  • Burlen Loring (Tue Mar 31 2015 - 16:20:44 CDT)
• select a group of atoms/distance measurement
  • Maxim Belkin (Fri Sep 26 2014 - 11:30:58 CDT)
  • amirhossein taghavi (Fri Sep 26 2014 - 07:59:17 CDT)
• Select a molecule with multiple indexes
  • Vermaas, Josh (Mon Nov 22 2021 - 10:42:48 CST)
  • Otakandza Glenn (Mon Nov 22 2021 - 09:17:27 CST)
• select all residues in a molecule
  • Maxim Belkin (Sat Jun 28 2014 - 23:58:27 CDT)
  • sunyeping (Sat Jun 28 2014 - 21:45:16 CDT)
• select and save every X atom
  • Josh Vermaas (Tue Jan 21 2014 - 16:16:13 CST)
  • Axel Kohlmeyer (Tue Jan 21 2014 - 15:55:02 CST)
  • Steven Neumann (Tue Jan 21 2014 - 15:01:19 CST)
• select atoms
  • Axel Kohlmeyer (Mon Mar 02 2009 - 20:24:55 CST)
  • bo baker (Mon Mar 02 2009 - 18:30:29 CST)
  • Joaquim Rui Rodrigues (Mon Mar 02 2009 - 04:57:41 CST)
  • bo baker (Sun Mar 01 2009 - 22:18:42 CST)
• select atoms between molecules
  • Karol Kaszuba (Wed Jan 02 2008 - 15:47:34 CST)
  • Karol Kaszuba (Wed Jan 02 2008 - 13:10:04 CST)
  • Axel Kohlmeyer (Wed Jan 02 2008 - 11:46:13 CST)
  • Sampo Karkola (Wed Jan 02 2008 - 06:13:39 CST)
• Select Atoms that are bonded to specific atom type
  • Vermaas, Joshua (Thu Sep 07 2017 - 16:38:29 CDT)
  • Arthur Vale (Thu Sep 07 2017 - 15:09:20 CDT)
• Select atoms using coordinates
  • Axel Kohlmeyer (Thu Apr 23 2009 - 08:48:57 CDT)
  • Max (Thu Apr 23 2009 - 03:15:15 CDT)
  • John Stone (Wed Apr 22 2009 - 14:03:32 CDT)
  • J. Rui Rodrigues (Wed Apr 22 2009 - 13:52:07 CDT)
  • Rogan Carr (Wed Apr 22 2009 - 11:30:49 CDT)
  • Max (Wed Apr 22 2009 - 06:09:16 CDT)
• select atoms within a sphere - atomselect
  • Monika Madhavi (Mon Feb 01 2016 - 06:02:36 CST)
  • Ashar Malik (Mon Jan 25 2016 - 12:59:23 CST)
  • Monika Madhavi (Mon Jan 25 2016 - 08:58:54 CST)
  • M K (Mon Jan 25 2016 - 04:39:01 CST)
  • Ashar Malik (Mon Jan 25 2016 - 03:56:04 CST)
  • M K (Mon Jan 25 2016 - 03:35:42 CST)
  • Ashar Malik (Mon Jan 25 2016 - 00:51:22 CST)
  • Monika Madhavi (Sun Jan 24 2016 - 23:31:07 CST)
• Select atoms within certain distance of vertical symmetry axis
  • Josh Vermaas (Tue May 20 2014 - 17:39:09 CDT)
  • Bryan Roessler (Tue May 20 2014 - 16:25:26 CDT)
• select by residue
  • Josh Vermaas (Mon Feb 18 2013 - 12:58:36 CST)
  • Jorgen Simonsen (Mon Feb 18 2013 - 11:45:55 CST)
• select cylindrical slab
  • Axel Kohlmeyer (Fri Jun 27 2008 - 12:51:26 CDT)
  • dimka (Fri Jun 27 2008 - 12:08:41 CDT)
  • Peter Freddolino (Fri Jun 27 2008 - 12:34:01 CDT)
• select each element of array
  • Axel Kohlmeyer (Tue Sep 20 2011 - 07:20:43 CDT)
  • Axel Kohlmeyer (Mon Sep 19 2011 - 20:18:35 CDT)
  • kirtana S (Mon Sep 19 2011 - 20:29:25 CDT)
  • kirtana S (Mon Sep 19 2011 - 17:31:43 CDT)
  • Axel Kohlmeyer (Mon Sep 19 2011 - 12:10:44 CDT)
  • kirtana S (Mon Sep 19 2011 - 11:11:59 CDT)
• select grafted chains in nanoparticle
  • John Stone (Mon Aug 20 2012 - 10:44:50 CDT)
  • simao.pereira_at_di3.units.it (Fri Aug 17 2012 - 14:21:59 CDT)
  • John Stone (Fri Aug 17 2012 - 10:24:19 CDT)
  • simao.pereira_at_di3.units.it (Thu Aug 16 2012 - 11:04:47 CDT)
• Select non-redundant set using struture Qr not working
  • Kirby Vandivort (Tue Oct 19 2010 - 11:54:26 CDT)
  • Raul Araya (Sun Oct 17 2010 - 18:52:00 CDT)
• Select Nucleic Acid sequence
  • Ashar Malik (Thu Jan 09 2020 - 04:43:56 CST)
  • Dominique Mias-Lucquin (Thu Jan 09 2020 - 02:28:07 CST)
  • John Stone (Tue Jan 07 2020 - 14:15:51 CST)
  • Dominique Mias-Lucquin (Fri Dec 20 2019 - 07:37:15 CST)
• select only border of the water box
  • Axel Kohlmeyer (Fri Aug 04 2006 - 07:01:53 CDT)
  • andrea spitaleri (Fri Aug 04 2006 - 04:41:00 CDT)
• Select phi, psi dihedrals with TopoTools
  • Axel Kohlmeyer (Wed Jan 21 2015 - 12:18:50 CST)
  • George Patargias (Wed Jan 21 2015 - 11:38:00 CST)
  • Axel Kohlmeyer (Wed Dec 10 2014 - 08:46:14 CST)
  • George Patargias (Wed Dec 10 2014 - 08:12:25 CST)
• Select Residues
  • M K (Mon Feb 09 2015 - 02:30:44 CST)
  • Ardavan Mehdizadeh (Mon Feb 09 2015 - 00:46:16 CST)
• Select the residue which comprises the atom with index
  • Maxim Belkin (Fri Jun 27 2014 - 12:27:07 CDT)
  • Ebert Maximilian (Fri Jun 27 2014 - 12:14:46 CDT)
  • Maxim Belkin (Fri Jun 27 2014 - 11:29:36 CDT)
  • Ebert Maximilian (Fri Jun 27 2014 - 11:08:22 CDT)
• select two segment in structure
  • sunyeping (Thu May 08 2014 - 11:36:28 CDT)
• Select waters inside cylinder
  • ROPÓN-PALACIOS G. (Tue Mar 21 2023 - 16:25:47 CDT)
• select whole residues
  • Axel Kohlmeyer (Tue Jan 03 2012 - 18:39:05 CST)
  • Chris Harrison (Tue Jan 03 2012 - 18:37:13 CST)
  • Peter C. Lai (Tue Jan 03 2012 - 17:50:00 CST)
• select within distance range
  • John Stone (Tue May 10 2005 - 13:18:13 CDT)
  • YOLANDA SMALL (Tue May 10 2005 - 12:44:12 CDT)
  • John Stone (Tue May 10 2005 - 10:36:24 CDT)
  • YOLANDA SMALL (Mon May 09 2005 - 16:23:24 CDT)
• Selected angles during build?
  • Chang, Christopher (Thu Feb 03 2005 - 15:38:04 CST)
• selected atoms
  • James Lord (Mon Mar 16 2015 - 16:03:50 CDT)
  • James Lord (Mon Mar 16 2015 - 15:56:28 CDT)
• Selecting a laptop for VMD and NAMD
  • PaweÅ‚ KÄ™dzierski (Wed Sep 28 2011 - 04:07:30 CDT)
• Selecting a laptop for VMD and NAMD (was: CUDA cores seen by VMD on GT540M)
  • Axel Kohlmeyer (Tue Sep 27 2011 - 10:36:20 CDT)
  • PaweÅ‚ KÄ™dzierski (Tue Sep 27 2011 - 09:29:31 CDT)
• selecting all atoms within a given coordinate range
  • Monika Madhavi (Mon Feb 23 2015 - 20:46:52 CST)
• Selecting all residues based on z-axis coordinate in a protein
  • Jérôme Hénin (Fri May 19 2017 - 05:08:15 CDT)
  • Marko Sever (Fri May 19 2017 - 03:12:23 CDT)
• Selecting AMBER ions Cl- and Na+ using VMD
  • Balazs Jojart (Wed Mar 17 2010 - 13:29:27 CDT)
  • Ajasja LjubetiÄ� (Wed Mar 17 2010 - 09:31:12 CDT)
  • Thomas C. Bishop (Wed Mar 17 2010 - 09:22:57 CDT)
  • DimitryASuplatov (Wed Mar 17 2010 - 06:42:41 CDT)
• Selecting atom of given residue in namdenergy plugin
  • Francesco Pietra (Wed Apr 19 2023 - 05:39:58 CDT)
• Selecting Atomnumber
  • John Stone (Wed Oct 04 2006 - 00:06:25 CDT)
  • Jeffrey A Tibbitt (Tue Oct 03 2006 - 21:15:19 CDT)
• selecting atoms
  • Peter Freddolino (Tue Apr 24 2007 - 10:10:41 CDT)
  • Nichols A. Romero (Tue Apr 24 2007 - 09:55:36 CDT)
• Selecting atoms based on 'type' with LAMMPS + PSF
  • Taco de Wolff (Mon Mar 28 2011 - 05:02:10 CDT)
• Selecting atoms based on the charges
  • Maxim Belkin (Tue Nov 11 2014 - 01:34:04 CST)
  • M K (Mon Nov 10 2014 - 18:55:41 CST)
  • Maxim Belkin (Tue Sep 23 2014 - 09:38:09 CDT)
  • Josh Vermaas (Tue Sep 23 2014 - 09:08:07 CDT)
  • M Karim (Mon Sep 22 2014 - 21:25:44 CDT)
• Selecting atoms in the RMSD tool
  • Dimitrova, Maria (Thu Sep 03 2015 - 07:34:49 CDT)
• Selecting atoms of same type in a certain distance (between X and Y angstroms away)
  • Simon Dürr (Wed Jun 22 2016 - 08:58:28 CDT)
  • Simon Dürr (Wed Jun 22 2016 - 08:42:50 CDT)
• Selecting atoms that have real SASA greater than 0, Not using "Surface"
  • Axel Kohlmeyer (Tue Jul 29 2008 - 20:40:30 CDT)
  • Christopher Gillespie (Tue Jul 29 2008 - 18:39:14 CDT)
  • John Stone (Mon Jul 21 2008 - 10:22:51 CDT)
  • Schreiner Eduard (Sun Jul 20 2008 - 22:03:40 CDT)
  • Christopher Gillespie (Sun Jul 20 2008 - 16:28:04 CDT)
• Selecting Atoms within a Volume, Manipulating Volumetric Data
  • John Stone (Wed Oct 26 2011 - 21:43:49 CDT)
  • Axel Kohlmeyer (Tue Oct 25 2011 - 08:03:13 CDT)
  • Michael LeVine (Sun Oct 23 2011 - 14:24:20 CDT)
• Selecting based on parameters from another file
  • Ana Celia Vila Verde (Fri Aug 10 2012 - 02:23:27 CDT)
  • Axel Kohlmeyer (Fri Aug 10 2012 - 02:08:02 CDT)
  • Nate Hurley (Thu Aug 09 2012 - 11:22:02 CDT)
• Selecting basic residues in g(r) GUI Plugin
  • Rabab Toubar (Tue Jul 06 2010 - 10:47:06 CDT)
• Selecting by X-coordinate
  • Keith Battle (Tue Oct 12 2010 - 18:00:35 CDT)
  • Keith Battle (Tue Oct 12 2010 - 17:31:02 CDT)
  • John Stone (Tue Oct 12 2010 - 17:43:19 CDT)
• selecting complete residues within perticular distance.
  • Peter Freddolino (Mon May 28 2007 - 15:58:26 CDT)
  • Cesar Luis Avila (Mon May 28 2007 - 14:04:32 CDT)
  • Peter Freddolino (Sun May 27 2007 - 18:09:46 CDT)
  • Cesar Luis Avila (Sun May 27 2007 - 16:06:29 CDT)
  • naga raju (Fri May 25 2007 - 02:33:28 CDT)
• Selecting CUDA devices in VMD 1.8.7
  • John Stone (Wed May 26 2010 - 10:39:53 CDT)
  • John Stone (Tue May 11 2010 - 22:07:03 CDT)
  • Axel Kohlmeyer (Tue May 11 2010 - 20:08:25 CDT)
  • Axel Kohlmeyer (Tue May 11 2010 - 19:19:21 CDT)
  • John Stone (Tue May 11 2010 - 19:23:48 CDT)
  • Joakim Swedberg (Tue May 11 2010 - 17:49:54 CDT)
• selecting every nth residue in a protein
  • Ajasja LjubetiÄ� (Thu Mar 27 2014 - 18:20:55 CDT)
  • Axel Kohlmeyer (Thu Mar 27 2014 - 17:34:30 CDT)
  • Research Jubilant (Thu Mar 27 2014 - 15:29:06 CDT)
• Selecting first three characters of a variable with tcl in VMD
  • Prathit Chatterjee (Thu Jun 04 2020 - 21:20:56 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Jun 04 2020 - 03:24:22 CDT)
  • Prathit Chatterjee (Thu Jun 04 2020 - 02:59:49 CDT)
  • Prathit Chatterjee (Thu Jun 04 2020 - 01:37:54 CDT)
  • Ashar Malik (Wed Jun 03 2020 - 23:53:46 CDT)
  • Prathit Chatterjee (Wed Jun 03 2020 - 22:56:41 CDT)
• selecting frames from trajectory
  • Luis Gracia (Wed May 03 2006 - 19:17:09 CDT)
  • John Stone (Wed May 03 2006 - 18:12:04 CDT)
  • John Stone (Wed May 03 2006 - 17:52:21 CDT)
  • Raul Araya Secchi (Wed May 03 2006 - 16:19:21 CDT)
• selecting from different molecules simultaneously
  • Axel Kohlmeyer (Thu May 06 2010 - 19:55:33 CDT)
  • Axel Kohlmeyer (Wed May 05 2010 - 21:39:54 CDT)
  • Fatemesadat Emami (Wed May 05 2010 - 18:35:26 CDT)
• Selecting multiple ranges
  • Salvatore Mario Cosseddu (Fri Jun 10 2011 - 11:20:21 CDT)
  • Seibold, Stephen (Fri Jun 10 2011 - 10:05:21 CDT)
  • John Stone (Fri Jun 10 2011 - 09:43:48 CDT)
  • Seibold, Stephen (Fri Jun 10 2011 - 09:28:48 CDT)
• Selecting one half of a residue based CG lipid bilayer
  • Tristan Croll (Fri Oct 17 2014 - 00:57:34 CDT)
  • Meander Myself (Thu Oct 16 2014 - 21:01:58 CDT)
• selecting protein + water shell
  • L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 10:02:32 CST)
  • Marcos Sotomayor (Fri Mar 10 2006 - 10:00:13 CST)
  • L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 09:43:34 CST)
• Selecting residues by number
  • John Stone (Wed Aug 17 2005 - 18:51:45 CDT)
  • John Stone (Wed Aug 17 2005 - 18:45:02 CDT)
  • John Stone (Wed Aug 17 2005 - 18:14:32 CDT)
  • Mihaly Mezei (Wed Aug 17 2005 - 17:46:13 CDT)
• selecting residues in a heterodimer
  • amin sagar (Mon Oct 29 2018 - 05:27:38 CDT)
  • Raag Saluja (Mon Oct 29 2018 - 03:48:21 CDT)
  • amin sagar (Mon Oct 29 2018 - 02:54:16 CDT)
  • amin sagar (Mon Oct 29 2018 - 02:47:31 CDT)
  • Raag Saluja (Mon Oct 29 2018 - 02:51:27 CDT)
  • Raag Saluja (Mon Oct 29 2018 - 01:42:50 CDT)
• selecting residues within 5-10A of another molecule
  • Ashar Malik (Wed Jan 10 2018 - 23:05:01 CST)
  • amin sagar (Wed Jan 10 2018 - 23:57:28 CST)
  • Vermaas, Joshua (Wed Jan 10 2018 - 17:02:01 CST)
  • Rabeta Yeasmin (Wed Jan 10 2018 - 15:22:26 CST)
• selecting ribose atoms?
  • Axel Kohlmeyer (Fri May 01 2009 - 19:48:34 CDT)
  • Samuel Coulbourn Flores (Fri May 01 2009 - 19:59:48 CDT)
  • Samuel Coulbourn Flores (Fri May 01 2009 - 18:47:46 CDT)
• selecting set of residue
  • Falgun Shah (Mon Feb 02 2009 - 14:44:45 CST)
• Selecting some atoms and changing the color of them
  • Peter Freddolino (Tue Oct 21 2008 - 07:24:08 CDT)
  • Iman Salehinia (Tue Oct 21 2008 - 01:55:03 CDT)
• Selecting structure closest to average
  • Axel Kohlmeyer (Tue Feb 03 2015 - 11:55:55 CST)
  • Jonathan Booth (Tue Feb 03 2015 - 10:46:38 CST)
• Selecting the "n" closest waters
  • Gustavo Seabra (Thu Jul 13 2006 - 16:59:58 CDT)
  • John Stone (Thu Jul 13 2006 - 16:53:32 CDT)
  • Gustavo Seabra (Thu Jul 13 2006 - 16:39:59 CDT)
  • John Stone (Thu Jul 13 2006 - 15:58:49 CDT)
  • Gustavo Seabra (Thu Jul 13 2006 - 12:39:31 CDT)
• Selecting the N-closest Waters
  • Claw Isthelaw (Mon Jun 02 2008 - 13:25:51 CDT)
  • Axel Kohlmeyer (Tue Aug 21 2007 - 20:35:16 CDT)
  • J T (Tue Aug 21 2007 - 20:00:47 CDT)
  • Axel Kohlmeyer (Tue Aug 21 2007 - 18:23:55 CDT)
  • Axel Kohlmeyer (Tue Aug 21 2007 - 19:26:57 CDT)
  • J T (Tue Aug 21 2007 - 18:54:08 CDT)
  • Nuno Loureiro Ferreira (Tue Aug 21 2007 - 16:34:25 CDT)
  • J T (Tue Aug 21 2007 - 16:10:03 CDT)
  • Nuno Loureiro Ferreira (Tue Aug 21 2007 - 15:55:13 CDT)
  • J T (Tue Aug 21 2007 - 12:40:19 CDT)
• Selecting the sides of a benzene ring
  • John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
  • Ignacio Fernández Galván (Wed Jul 30 2008 - 02:24:58 CDT)
  • John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
  • Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
  • Ignacio Fernández Galván (Wed Jul 23 2008 - 02:39:23 CDT)
  • Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
  • Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
  • Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
  • Ignacio Fernández Galván (Tue Jul 22 2008 - 06:30:21 CDT)
• Selecting water molecules within 5 ang in a trajectory( generated by amber).
  • naga raju (Sat Dec 29 2007 - 00:02:12 CST)
  • Axel Kohlmeyer (Wed Dec 26 2007 - 14:12:05 CST)
  • Thomas Evangelidis (Wed Dec 26 2007 - 09:49:31 CST)
  • naga raju (Wed Dec 26 2007 - 01:01:50 CST)
• selecting waters
  • cmhartshorn (Mon May 11 2009 - 17:31:55 CDT)
  • Axel Kohlmeyer (Mon May 11 2009 - 13:11:50 CDT)
  • Rogan Carr (Mon May 11 2009 - 12:53:28 CDT)
  • Mark M Huntress (Mon May 11 2009 - 12:35:10 CDT)
• Selecting waters between two given distances from a particular point
  • Bjørnar Jensen (Sat Oct 20 2012 - 04:34:26 CDT)
  • Sajeewa Pemasinghe (Fri Oct 19 2012 - 21:13:57 CDT)
• selection
  • Chris Harrison (Mon Oct 31 2011 - 17:03:55 CDT)
  • matziast_at_med.uth.gr (Mon Oct 31 2011 - 16:15:54 CDT)
  • John Stone (Mon Oct 31 2011 - 16:00:46 CDT)
  • matziast_at_med.uth.gr (Mon Oct 31 2011 - 16:23:38 CDT)
  • matziast_at_med.uth.gr (Mon Oct 31 2011 - 15:57:03 CDT)
  • matziast_at_med.uth.gr (Mon Oct 31 2011 - 15:50:58 CDT)
  • Chris Harrison (Mon Oct 31 2011 - 15:13:57 CDT)
  • John Stone (Mon Oct 31 2011 - 14:39:13 CDT)
  • matziast_at_med.uth.gr (Mon Oct 31 2011 - 13:39:43 CDT)
  • matziast_at_med.uth.gr (Mon Oct 31 2011 - 12:45:50 CDT)
  • Andrew Dalke (Fri Jul 25 2003 - 18:22:25 CDT)
  • Ioana Cozmuta (Fri Jul 25 2003 - 17:38:46 CDT)
  • Deepak Singh (Tue Oct 17 2000 - 11:51:33 CDT)
  • John Stone (Tue Oct 17 2000 - 11:42:30 CDT)
  • Deepak Singh (Tue Oct 17 2000 - 11:31:12 CDT)
  • Sergei Izrailev (Tue Oct 17 2000 - 11:28:18 CDT)
  • Deepak Singh (Tue Oct 17 2000 - 11:08:51 CDT)
• Selection "@myselection"
  • John Stone (Tue May 05 2009 - 10:17:57 CDT)
  • Olaf Lenz (Thu Apr 30 2009 - 04:25:05 CDT)
• Selection "within x of something" is not updated throughout DCD trajectory?
  • John Stone (Thu Mar 27 2008 - 14:04:35 CDT)
  • Maxim Paliy (Thu Mar 27 2008 - 13:59:25 CDT)
• Selection along line in 3D
  • Josh Vermaas (Sun Sep 07 2014 - 12:22:46 CDT)
  • Josh Vermaas (Sat Sep 06 2014 - 11:53:40 CDT)
  • Ana Celia Vila Verde (Sat Sep 06 2014 - 03:39:38 CDT)
  • Eric Smoll (Sat Sep 06 2014 - 01:40:10 CDT)
• selection and coloring
  • John Stone (Tue Mar 05 2002 - 10:35:48 CST)
  • Fei Xu (Mon Mar 04 2002 - 10:06:35 CST)
• selection atoms depending on bonding, selection of 'new' molecules
  • Francesca Lønstad Bleken (Fri Oct 14 2016 - 10:58:01 CDT)
  • Axel Kohlmeyer (Fri Oct 14 2016 - 09:52:54 CDT)
  • John Stone (Fri Oct 14 2016 - 10:05:05 CDT)
  • John Stone (Fri Oct 14 2016 - 09:41:12 CDT)
  • Francesca Lønstad Bleken (Fri Oct 14 2016 - 05:39:58 CDT)
  • Francesca Lønstad Bleken (Fri Oct 14 2016 - 04:30:56 CDT)
• Selection basing on the number of hydrogen bonds
  • Tatyana Kuznetsova (Thu Jun 09 2005 - 02:30:14 CDT)
• Selection by Atom Number or Fragments
  • John Stone (Wed Jan 22 2020 - 12:43:25 CST)
  • Roshan Shrestha (Sat Jan 18 2020 - 02:55:47 CST)
• selection by residue
  • Nicolas (Thu Mar 05 2009 - 10:34:05 CST)
  • Marius Retegan (Thu Mar 05 2009 - 08:29:28 CST)
  • Marius Retegan (Thu Mar 05 2009 - 06:47:53 CST)
• selection for polar hydrogens only
  • poker_at_physics.usyd.edu.au (Wed Aug 26 2009 - 02:05:44 CDT)
  • Schreiner Eduard (Tue Aug 25 2009 - 22:50:43 CDT)
  • poker_at_physics.usyd.edu.au (Tue Aug 25 2009 - 22:13:26 CDT)
• selection in different pcb images
  • John Stone (Thu Apr 13 2006 - 00:09:46 CDT)
  • dimka (Tue Apr 11 2006 - 15:02:37 CDT)
• Selection in VMD Graphical representation
  • John Stone (Wed Feb 20 2008 - 13:32:03 CST)
  • Axel Kohlmeyer (Wed Feb 20 2008 - 12:05:29 CST)
  • Pavan Ghatty (Wed Feb 20 2008 - 10:22:03 CST)
• selection manager
  • Nuno Sousa Cerqueira (Wed Apr 23 2014 - 04:16:08 CDT)
  • Ajasja LjubetiÄ� (Tue Apr 22 2014 - 06:38:16 CDT)
  • Nuno Sousa Cerqueira (Tue Apr 22 2014 - 05:44:00 CDT)
• selection of 2 molecules
  • John Stone (Wed Oct 20 2004 - 14:32:47 CDT)
  • Volodymyr Zloy (Wed Oct 20 2004 - 08:25:16 CDT)
• selection of amino acids with certain distance each others
  • Joshua Adelman (Sun Dec 19 2010 - 15:00:40 CST)
  • Francesco Oteri (Sun Dec 19 2010 - 14:39:53 CST)
  • Ajasja LjubetiÄ� (Sun Dec 19 2010 - 14:07:03 CST)
  • Axel Kohlmeyer (Sun Dec 19 2010 - 13:59:02 CST)
  • leila karami (Sun Dec 19 2010 - 13:00:23 CST)
• Selection of atoms and bond specific to MD snapshot
  • Axel Kohlmeyer (Sat Nov 06 2004 - 15:12:35 CST)
  • Sanjeev B.S. (Sat Nov 06 2004 - 10:58:40 CST)
• selection of atoms on INSIDE protein
  • Anthony Cruz (Mon Mar 06 2006 - 11:26:12 CST)
  • Anthony Cruz (Mon Mar 06 2006 - 10:20:08 CST)
  • John Stone (Wed Mar 01 2006 - 16:44:04 CST)
  • ziemys_at_ecr6.ohio-state.edu (Tue Feb 28 2006 - 18:50:00 CST)
• selection of atoms/residues across multiple molecules...
  • Shashidhar Rao (Mon Feb 01 2016 - 16:27:39 CST)
  • Ashar Malik (Mon Feb 01 2016 - 16:02:49 CST)
  • Shashidhar Rao (Mon Feb 01 2016 - 14:25:15 CST)
  • Ashar Malik (Mon Feb 01 2016 - 11:52:22 CST)
  • Shashidhar Rao (Mon Feb 01 2016 - 10:57:37 CST)
  • Ashar Malik (Sat Jan 30 2016 - 23:26:21 CST)
  • Shashidhar Rao (Fri Jan 29 2016 - 10:45:07 CST)
• Selection of lipids not in contact with polymer
  • Ashar Malik (Sun May 21 2017 - 18:00:34 CDT)
  • Mihaela Drenscko (Sat May 20 2017 - 18:39:32 CDT)
• selection of molecules in dynamic region
  • SHRAVANI NETHI . (Wed Jul 01 2020 - 11:59:23 CDT)
  • SHRAVANI NETHI . (Wed Jul 01 2020 - 12:04:05 CDT)
  • Axel Kohlmeyer (Wed Jul 01 2020 - 10:53:37 CDT)
  • SHRAVANI NETHI (Wed Jul 01 2020 - 10:16:11 CDT)
  • Axel Kohlmeyer (Mon Jun 29 2020 - 06:13:44 CDT)
  • SHRAVANI NETHI . (Mon Jun 29 2020 - 03:05:10 CDT)
• Selection of residues in a trajectory
  • amit_at_mbu.iisc.ernet.in (Tue Oct 31 2006 - 13:50:23 CST)
• selection of sugars with VMD
  • John Stone (Tue Aug 02 2011 - 17:09:34 CDT)
  • Molybdos Kirkimpolakis (Tue Aug 02 2011 - 14:11:49 CDT)
• selection of water molecules around particular number of atoms
  • Ashma Khan (Wed Nov 28 2018 - 23:54:42 CST)
• Selection problem on TkCon
  • Ahmet Bakan (Tue May 04 2004 - 18:57:39 CDT)
  • Justin Gullingsrud (Tue May 04 2004 - 15:07:44 CDT)
  • Brian Bennion (Tue May 04 2004 - 13:20:20 CDT)
  • Mike McCallum (Tue May 04 2004 - 11:27:01 CDT)
  • Ahmet Bakan (Tue May 04 2004 - 06:47:55 CDT)
  • Brian Bennion (Mon May 03 2004 - 14:14:10 CDT)
  • Ahmet Bakan (Mon May 03 2004 - 13:42:43 CDT)
  • Justin Gullingsrud (Mon May 03 2004 - 10:46:33 CDT)
  • Brian Bennion (Mon May 03 2004 - 10:14:02 CDT)
  • Ahmet Bakan (Mon May 03 2004 - 05:56:25 CDT)
  • Justin Gullingsrud (Mon May 03 2004 - 03:35:50 CDT)
  • Ahmet Bakan (Sun May 02 2004 - 19:55:43 CDT)
• selection question
  • Justin Gullingsrud (Thu Aug 15 2002 - 08:51:05 CDT)
  • Vlad Cojocaru (Thu Aug 15 2002 - 07:28:58 CDT)
• selection syntax
  • Anton Arkhipov (Mon Mar 30 2009 - 09:03:47 CDT)
  • Leonardo Trabuco (Mon Mar 30 2009 - 09:10:29 CDT)
  • Peter Jones (Mon Mar 30 2009 - 01:54:32 CDT)
• Selection Text for two C atoms with a double bond
  • Arthur Vale (Thu Aug 24 2017 - 18:17:29 CDT)
  • Vermaas, Joshua (Thu Aug 24 2017 - 18:11:13 CDT)
  • Vermaas, Joshua (Thu Aug 24 2017 - 18:30:23 CDT)
  • Arthur Vale (Thu Aug 24 2017 - 17:09:22 CDT)
  • Arthur Vale (Thu Aug 24 2017 - 16:55:20 CDT)
• Selection tool
  • Narasimhan LOGANATHAN (Tue Jan 19 2010 - 03:06:21 CST)
• selection update
  • John Stone (Fri Jun 26 2009 - 14:26:51 CDT)
  • kumar prashanth (Fri Jun 26 2009 - 08:03:21 CDT)
• Selection within VMD
  • Axel Kohlmeyer (Wed Aug 22 2007 - 14:12:59 CDT)
  • Olaf Lenz (Wed Aug 22 2007 - 15:36:09 CDT)
  • John Stone (Wed Aug 22 2007 - 15:04:15 CDT)
  • Mark Zottola (Wed Aug 22 2007 - 14:28:53 CDT)
• Selections based on "bonded to"
  • John Stone (Fri Oct 23 2009 - 13:39:08 CDT)
  • John Stone (Fri Oct 23 2009 - 11:13:51 CDT)
  • Schmidt, Mike (Fri Oct 23 2009 - 10:56:00 CDT)
• Selections in periodic boxes
  • Nicolas Sapay (Mon Mar 06 2006 - 09:13:38 CST)
  • Ignacio Fernández Galván (Thu Feb 16 2006 - 05:24:07 CST)
• Selective coloring question
  • JeJoon Yeon (Thu Jul 30 2015 - 19:36:27 CDT)
• Self Assembled Monolayer
  • Daniel Schwaab (Tue May 31 2005 - 09:48:06 CDT)
• Self-Assemble Monolayer
  • Natnael Doilicho (Wed Jul 23 2014 - 17:22:16 CDT)
• self-coeeficient diffusion
  • nicolas.floquet_at_univ-reims.fr (Fri Jun 01 2007 - 07:41:27 CDT)
• self-diffusion coefficient from RMSD
  • Dudo (Mon Feb 03 2014 - 21:44:29 CST)
  • Josh Vermaas (Mon Feb 03 2014 - 19:04:56 CST)
  • Ali Alizadeh (Fri Jan 31 2014 - 12:45:41 CST)
  • . Juita (Fri Jan 31 2014 - 00:55:55 CST)
  • Josh Vermaas (Thu Jan 30 2014 - 08:12:14 CST)
  • Ali Alizadeh (Thu Jan 30 2014 - 06:57:55 CST)
  • . Juita (Thu Jan 30 2014 - 03:21:45 CST)
• Seminars Trainings
  • Christian Wohlschlager (Wed Nov 24 2010 - 02:37:48 CST)
• send data on demand using IMD?
  • John Stone (Fri Nov 14 2003 - 10:24:05 CST)
  • Jan Saam (Thu Nov 13 2003 - 11:59:10 CST)
• sending arguments to tcl
  • _at_huji.ac.il (Sun Feb 04 2007 - 02:21:02 CST)
  • John Stone (Thu Feb 01 2007 - 16:53:24 CST)
  • Axel Kohlmeyer (Thu Feb 01 2007 - 15:55:30 CST)
  • John Stone (Thu Feb 01 2007 - 14:56:00 CST)
  • _at_huji.ac.il (Thu Feb 01 2007 - 13:39:20 CST)
• Separate graphical objects?
  • Justin Gullingsrud (Sat Aug 17 2002 - 12:01:07 CDT)
  • Pawel Kedzierski (Sat Aug 17 2002 - 11:36:24 CDT)
  • Justin Gullingsrud (Thu Aug 15 2002 - 16:05:55 CDT)
  • Pawel Kedzierski (Wed Aug 14 2002 - 23:40:31 CDT)
• Sequence Menu For Nucleic Acids
  • Patrick Ladam (Mon May 19 2003 - 08:55:45 CDT)
• Sequences and BLAST searching
  • Elijah Roberts (Wed Nov 15 2006 - 12:05:57 CST)
  • Baxy (Wed Nov 15 2006 - 06:51:22 CST)
  • Baxy (Wed Nov 15 2006 - 06:47:08 CST)
• sequential multiple structures
  • Axel Kohlmeyer (Fri Sep 29 2006 - 07:25:23 CDT)
  • jiwu liu (Thu Sep 28 2006 - 17:50:15 CDT)
• Sequentially numbering atom names in pdb file
  • Axel Kohlmeyer (Wed Nov 05 2008 - 16:24:57 CST)
  • Robert Brunner (Wed Nov 05 2008 - 16:02:54 CST)
  • Subramanian Vaitheeswaran (Wed Nov 05 2008 - 14:29:24 CST)
• Server for structural models of the unfolded state of proteins
  • Joshua Adelman (Fri Feb 25 2011 - 20:53:53 CST)
  • Axel Kohlmeyer (Fri Feb 25 2011 - 19:48:08 CST)
  • Samy Hamdouche (Fri Feb 25 2011 - 19:03:15 CST)
• Set "center" in script
  • Tim Lo (Sat Aug 29 2015 - 01:58:43 CDT)
  • Eric Smoll (Sat Aug 29 2015 - 01:10:04 CDT)
• set $sel {x y z} not working?
  • Axel Kohlmeyer (Sun Oct 11 2015 - 09:46:22 CDT)
  • Frank Zack (Sun Oct 11 2015 - 09:07:29 CDT)
• set a different beta field for each frame of trajectory
  • John Stone (Tue Mar 15 2005 - 10:03:49 CST)
  • Vlad Cojocaru (Tue Mar 15 2005 - 08:02:02 CST)
• Set constant length scale to molecules in boxes of different sizes
  • Pacci Evaristo, Felipe Fabricio (Sun Feb 26 2023 - 14:39:37 CST)
• Set minimum distance cutoff for dynamic bonds
  • Shangmin Xiong (Sun Apr 24 2016 - 22:46:44 CDT)
• Set molecule ID by topo tools
  • John Stone (Wed Oct 21 2020 - 13:44:04 CDT)
  • fan li (Fri Oct 09 2020 - 11:26:04 CDT)
• set non-zero box sizes for GAMESS output
  • Axel Kohlmeyer (Tue Mar 16 2021 - 13:30:53 CDT)
  • John Stone (Tue Mar 16 2021 - 11:55:50 CDT)
  • marco di gennaro (Tue Mar 16 2021 - 04:42:35 CDT)
  • marco di gennaro (Tue Mar 16 2021 - 03:06:35 CDT)
• set tcl/tk variable from "get resname" command
  • Maxim Belkin (Fri Oct 10 2014 - 13:12:45 CDT)
  • mason H (Fri Oct 10 2014 - 12:58:47 CDT)
• set view along an chosen axis
  • Maxim Belkin (Mon Mar 31 2014 - 15:55:49 CDT)
  • wei gao (Mon Mar 31 2014 - 15:44:07 CDT)
• setbonds
  • BIN ZHANG (Wed Apr 22 2009 - 14:53:11 CDT)
  • Rogan Carr (Wed Apr 22 2009 - 11:29:32 CDT)
  • John Stone (Tue Apr 21 2009 - 23:44:35 CDT)
  • zhngbn_at_gmail.com (Tue Apr 21 2009 - 23:48:30 CDT)
  • BIN ZHANG (Tue Apr 21 2009 - 23:01:35 CDT)
• setenv: Too many arguments
  • Balazs Jojart (Sat Oct 16 2010 - 00:53:21 CDT)
  • Balazs Jojart (Fri Oct 15 2010 - 16:34:52 CDT)
  • John Stone (Fri Oct 15 2010 - 16:42:00 CDT)
• Setting atom coordinates in VMD
  • Vishnu K (Fri Jun 17 2016 - 02:37:11 CDT)
• setting bonds so that they are saved in DMS format output
  • Axel Kohlmeyer (Fri Jun 28 2013 - 22:23:31 CDT)
  • Christopher Neale (Fri Jun 28 2013 - 21:26:40 CDT)
• setting coloring and drawing methods
  • Peter Freddolino (Fri Jan 29 2021 - 10:29:40 CST)
  • Magnus Andersson (Fri Jan 29 2021 - 09:20:48 CST)
  • Vermaas, Josh (Fri Jan 29 2021 - 09:37:38 CST)
  • Magnus Andersson (Fri Jan 29 2021 - 08:05:24 CST)
• Setting colors
  • Justin Gullingsrud (Fri Feb 18 2000 - 10:25:50 CST)
  • Timm Essigke (Thu Feb 17 2000 - 16:04:33 CST)
• Setting Default Colors in vmdrc
  • Tyler Westland (Tue Sep 20 2016 - 15:45:15 CDT)
  • John Stone (Thu Sep 08 2016 - 11:57:19 CDT)
  • Tyler Westland (Thu Sep 08 2016 - 10:17:53 CDT)
• Setting default viewing window location in XP
  • John Stone (Tue Oct 14 2003 - 11:03:04 CDT)
  • Dallas Warren (Mon Oct 13 2003 - 19:40:48 CDT)
• setting different bond length for different atom pair
  • John Stone (Fri Apr 15 2011 - 16:24:55 CDT)
  • Debasis Sengupta (Thu Apr 14 2011 - 12:07:56 CDT)
  • Axel Kohlmeyer (Fri Feb 11 2011 - 13:00:56 CST)
  • Debasis Sengupta (Fri Feb 11 2011 - 12:01:44 CST)
• setting different colors
  • Justin Gullingsrud (Sun Aug 21 2005 - 15:55:04 CDT)
  • Jaime Sanchez (Thu Aug 18 2005 - 23:33:32 CDT)
• Setting graphical representations from the command line
  • Peter Freddolino (Fri Apr 10 2020 - 18:24:05 CDT)
  • Josh Vermaas (Fri Apr 10 2020 - 15:19:21 CDT)
  • Ross Williams (Fri Apr 10 2020 - 14:36:07 CDT)
• Setting modstyle volumeslice options via tk console
  • Axel Kohlmeyer (Wed Jul 18 2007 - 16:27:47 CDT)
  • Cesar Luis Avila (Wed Jul 18 2007 - 15:16:20 CDT)
• Setting molecule ColorID to values greater than 32
  • Dudo (Fri Aug 03 2012 - 09:07:56 CDT)
  • John Stone (Thu Aug 02 2012 - 14:01:18 CDT)
  • Nate Hurley (Thu Aug 02 2012 - 13:36:02 CDT)
• Setting number of water molecules for the given box dimension
  • jestin mandumpal (Thu Oct 18 2007 - 22:01:57 CDT)
• setting secondary structure
  • Chitrak Gupta (Fri Sep 09 2016 - 17:31:27 CDT)
• Setting the speed of rotation
  • John Stone (Tue Apr 19 2005 - 10:28:58 CDT)
  • Palmer, Teresa (Mon Apr 18 2005 - 11:27:26 CDT)
• setting the view in VMD
  • Jeeno Jose (Sat Aug 01 2015 - 14:39:07 CDT)
  • Axel Kohlmeyer (Sat Aug 01 2015 - 13:56:30 CDT)
  • Jeeno Jose (Sat Aug 01 2015 - 13:23:35 CDT)
• setting unit cell dimensions
  • Axel Kohlmeyer (Mon Oct 15 2007 - 03:54:49 CDT)
  • Olaf Lenz (Mon Oct 15 2007 - 02:43:47 CDT)
  • bbickmore_at_comcast.net (Sun Oct 14 2007 - 23:07:50 CDT)
• setting up a 4k HD TV for passive stereoscopic 3d
  • John Stone (Fri Apr 08 2016 - 00:36:45 CDT)
  • Yoav Atsmon-Raz (Thu Apr 07 2016 - 15:34:34 CDT)
  • Yoav Atsmon-Raz (Wed Apr 06 2016 - 14:49:10 CDT)
  • John Stone (Wed Apr 06 2016 - 19:19:16 CDT)
  • John Stone (Wed Apr 06 2016 - 14:31:51 CDT)
  • Yoav Atsmon-Raz (Wed Apr 06 2016 - 13:45:49 CDT)
• Setting up a Phantom Omni for use with VMD on CentOS 6
  • John Stone (Sat Dec 01 2012 - 23:20:06 CST)
  • Ray, William (Thu Nov 29 2012 - 12:22:23 CST)
• Setting up a truncation cutoff fro volumetric data
  • Caro Miguel (Tue Apr 28 2015 - 11:05:05 CDT)
  • Axel Kohlmeyer (Tue Apr 28 2015 - 10:41:55 CDT)
  • Ryan McGreevy (Tue Apr 28 2015 - 10:06:28 CDT)
  • Miguel Caro (Tue Apr 28 2015 - 04:03:52 CDT)
• setting up POPS or POPG in VMD
  • Rabeta Yeasmin (Tue Feb 13 2018 - 13:05:15 CST)
  • Rabeta Yeasmin (Tue Feb 13 2018 - 13:44:48 CST)
  • Rabeta Yeasmin (Tue Feb 13 2018 - 13:41:25 CST)
  • Giacomo Fiorin (Tue Feb 13 2018 - 13:29:09 CST)
  • Rabeta Yeasmin (Tue Feb 13 2018 - 13:36:35 CST)
  • amin sagar (Tue Feb 13 2018 - 13:36:17 CST)
  • Brian Radak (Tue Feb 13 2018 - 10:31:47 CST)
  • Rabeta Yeasmin (Mon Feb 12 2018 - 16:32:33 CST)
• Setting up remote GPU
  • jhamre (Wed Mar 13 2019 - 06:23:53 CDT)
• setting up the grid for periodic coulomb volmap calc
  • David Hardy (Mon Feb 25 2013 - 15:21:52 CST)
  • Edward Lyman (Mon Feb 25 2013 - 15:20:43 CST)
  • John Stone (Mon Feb 25 2013 - 15:03:27 CST)
  • Edward Lyman (Fri Feb 22 2013 - 09:19:43 CST)
• Setting user field for time varying parameters?
  • John Stone (Thu Dec 01 2016 - 15:40:57 CST)
  • Brian Radak (Thu Dec 01 2016 - 15:24:45 CST)
  • Vermaas, Joshua (Thu Dec 01 2016 - 15:11:56 CST)
  • John Stone (Thu Dec 01 2016 - 15:09:27 CST)
  • Brian Radak (Thu Dec 01 2016 - 14:05:28 CST)
• settings for labels
  • Francesco Pietra (Thu Jan 16 2020 - 09:41:16 CST)
• setup path to write
  • John Stone (Tue Jan 14 2014 - 11:00:25 CST)
  • Jorgen Simonsen (Fri Dec 27 2013 - 13:38:32 CST)
• Seventh European Workshop in Drug Design - Siena
  • Lucilla Angeli (Thu Mar 05 2009 - 06:42:36 CST)
• several cmds to read structure and trajectory files
  • John Stone (Thu Sep 15 2005 - 11:19:43 CDT)
  • Jian Zou (Wed Sep 14 2005 - 08:19:33 CDT)
• several coor files from dcd file
  • John Stone (Thu Sep 15 2005 - 10:54:59 CDT)
  • Ya.Shashel (Thu Sep 15 2005 - 06:18:23 CDT)
• Several molecules
  • John Stone (Tue May 20 2008 - 10:21:03 CDT)
  • paquotau_at_loria.fr (Tue May 20 2008 - 10:17:18 CDT)
• several questions,
  • John Stone (Thu Oct 05 2000 - 16:43:57 CDT)
  • Bettler Emmanuel (Tue Sep 26 2000 - 07:01:11 CDT)
• SGI O2 stereo problems
  • Ben Cornett (Thu Mar 09 2000 - 12:13:20 CST)
  • Bogdan Costescu (Thu Mar 09 2000 - 08:00:27 CST)
  • John Stone (Wed Mar 08 2000 - 15:04:34 CST)
  • Bogdan Costescu (Wed Mar 08 2000 - 14:43:38 CST)
  • Bogdan Costescu (Tue Feb 15 2000 - 13:33:15 CST)
• SGI problem!
  • Emmanuel Vamvakopoulos (Fri Oct 29 1999 - 07:57:27 CDT)
• shades of licorice representation
  • Sébastien Légaré (Wed Oct 09 2013 - 23:42:09 CDT)
  • Axel Kohlmeyer (Wed Jul 20 2011 - 08:57:58 CDT)
  • maria goranovic (Wed Jul 20 2011 - 05:28:48 CDT)
  • Mark Cunningham (Tue Jul 19 2011 - 15:19:53 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 15:24:26 CDT)
  • Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
  • Mark Cunningham (Tue Jul 19 2011 - 11:53:54 CDT)
  • Boris Steipe (Tue Jul 19 2011 - 10:10:01 CDT)
  • Axel Kohlmeyer (Tue Jul 19 2011 - 10:02:52 CDT)
  • Axel Kohlmeyer (Tue Jul 19 2011 - 08:44:13 CDT)
  • maria goranovic (Tue Jul 19 2011 - 08:52:19 CDT)
  • maria goranovic (Tue Jul 19 2011 - 07:53:52 CDT)
• Shadows in TachyonLOptiXInternal vs TachyonLOptiXInteractive
  • Soeren von Buelow (Tue Aug 25 2020 - 09:06:03 CDT)
• SHAKE or RATTLE algorithm
  • Ramin Ekhteiari (Fri Apr 04 2014 - 15:08:04 CDT)
• shake vs. rigidbonds
  • Sheldon Park (Thu Jul 29 2004 - 14:29:12 CDT)
• SHAKE/namd
  • Justin Gullingsrud (Thu Jan 16 2003 - 23:23:33 CST)
  • John Stone (Thu Jan 16 2003 - 20:54:37 CST)
  • Ioana Cozmuta (Thu Jan 16 2003 - 20:20:05 CST)
• Shannon entropy in MultiSeq?
  • Aaron Oakley (Tue Aug 03 2021 - 00:11:26 CDT)
• sharing atoms
  • Axel Kohlmeyer (Mon May 16 2011 - 09:43:13 CDT)
  • beyza bilgic (Mon May 16 2011 - 08:52:33 CDT)
• Sharp 3D stereo monitors
  • John Stone (Mon Sep 20 2004 - 09:04:07 CDT)
  • Mads Nørregaard-Madsen (Mon Sep 20 2004 - 06:11:02 CDT)
• shift the molecules via VMD
  • John Stone (Thu Aug 23 2012 - 09:43:37 CDT)
  • oguz gurbulak (Thu Aug 23 2012 - 05:11:18 CDT)
• shifting of ions from +z to -z in a single frame(1ps)
  • Axel Kohlmeyer (Tue Oct 06 2020 - 22:13:37 CDT)
  • Basanta Acharya (Tue Oct 06 2020 - 21:39:01 CDT)
• shifting of the origin
  • Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:07:36 CDT)
  • Bhaskar Jyoti Borah (Wed Jul 11 2007 - 23:33:22 CDT)
  • John Stone (Wed Jul 11 2007 - 23:56:48 CDT)
  • Bhaskar Jyoti Borah (Wed Jul 11 2007 - 11:24:15 CDT)
  • Axel Kohlmeyer (Wed Jul 11 2007 - 10:49:47 CDT)
  • Axel Kohlmeyer (Wed Jul 11 2007 - 09:22:41 CDT)
  • Bhaskar Jyoti Borah (Tue Jul 10 2007 - 23:49:15 CDT)
• Shifting the Geometric Center of entire set of molecules to origin
  • Tim Lo (Fri Nov 06 2015 - 22:38:19 CST)
  • Joaquim Rui de Castro Rodrigues (Wed Nov 04 2015 - 06:14:13 CST)
  • Tristan Croll (Wed Nov 04 2015 - 05:38:44 CST)
  • Sourav Ray (Wed Nov 04 2015 - 04:33:58 CST)
• shifting the origin of the box
  • John Stone (Mon Jun 28 2004 - 15:24:24 CDT)
  • Vani Krishna (Mon Jun 28 2004 - 13:38:17 CDT)
• Shortening a Simulation
  • John Stone (Tue Jun 28 2016 - 10:15:00 CDT)
  • Jackson Cavett (Mon Jun 27 2016 - 19:11:05 CDT)
• should commercial user pay for VMD
  • Albert (Mon Jul 06 2015 - 09:45:23 CDT)
  • John Stone (Mon Jul 06 2015 - 09:39:18 CDT)
  • Albert (Mon Jul 06 2015 - 08:48:50 CDT)
• Show a movie from one static structure to another in VMD?
  • Dallas B. Warren (Wed Oct 12 2005 - 19:51:36 CDT)
  • John Stone (Wed Oct 12 2005 - 17:01:22 CDT)
  • Mingliang Tan (Wed Oct 12 2005 - 12:58:55 CDT)
• Show additional data
  • John Stone (Thu Jan 14 2016 - 15:36:04 CST)
  • Matthias Ernst (Thu Jan 14 2016 - 10:38:28 CST)
  • John Stone (Wed Jan 13 2016 - 12:05:37 CST)
  • Matthias Ernst (Fri Jan 08 2016 - 12:55:49 CST)
• show atom number in xyz file
  • John Stone (Wed Jun 13 2007 - 02:52:12 CDT)
  • Petrica GASCA (Wed Jun 06 2007 - 10:24:47 CDT)
  • JC Gumbart (Tue May 22 2007 - 11:59:35 CDT)
  • Axel Kohlmeyer (Tue May 22 2007 - 07:33:34 CDT)
  • Petrica GASCA (Tue May 22 2007 - 04:32:36 CDT)
  • John Stone (Fri May 11 2007 - 11:06:17 CDT)
  • Petrica GASCA (Fri May 11 2007 - 06:49:10 CDT)
• show hbonds
  • John Stone (Fri Oct 17 2003 - 18:16:47 CDT)
  • tscheng_at_ic.sunysb.edu (Thu Oct 16 2003 - 20:37:06 CDT)
• Show tcl console selections in VMD graphical display
  • Alexandre Suman de Araújo (Thu Mar 23 2023 - 09:53:42 CDT)
  • Diego Gomes (Thu Mar 23 2023 - 09:11:43 CDT)
  • Alexandre Suman de Araújo (Thu Mar 23 2023 - 04:06:05 CDT)
• show water around a residue for all the frames of the MD trajectory
  • Josh Vermaas (Mon Jan 05 2015 - 10:49:39 CST)
  • Sunyeping (Sat Jan 03 2015 - 09:13:16 CST)
• show_replicas.vmd can't find basesel
  • Francesco Pietra (Tue Sep 17 2013 - 02:31:30 CDT)
  • John Stone (Tue Sep 17 2013 - 00:03:53 CDT)
  • Francesco Pietra (Mon Sep 16 2013 - 12:49:15 CDT)
• showing all vmd output
  • Justin Gullingsrud (Thu Sep 18 2003 - 16:36:33 CDT)
  • John Stone (Thu Sep 18 2003 - 15:59:55 CDT)
  • Lubos Vrbka (Thu Sep 18 2003 - 13:09:57 CDT)
• Showing and Calculating the amount of water molecules inside carbon nanotube
  • John Stone (Fri Sep 16 2011 - 13:59:40 CDT)
  • Axel Kohlmeyer (Tue Sep 13 2011 - 23:54:39 CDT)
  • meisam valizadeh kiamahalleh (Tue Sep 13 2011 - 22:23:13 CDT)
  • meisam valizadeh kiamahalleh (Mon Sep 12 2011 - 22:18:48 CDT)
• Showing atom index in vmd
  • reza vatan (Wed Jan 20 2016 - 20:18:42 CST)
  • Samuel Bowerman (Wed Jan 20 2016 - 16:54:23 CST)
  • reza vatan (Wed Jan 20 2016 - 16:28:36 CST)
• Showing bonds created with"bond" command of LEaP
  • Francesco Pietra (Mon Jun 03 2013 - 09:42:28 CDT)
• showing bonds in .xyz files
  • Axel Kohlmeyer (Wed Jul 07 2021 - 12:32:32 CDT)
  • Jason Smith (Wed Jul 07 2021 - 11:29:00 CDT)
  • Yiyan Kuang (Tue Jul 06 2021 - 22:13:38 CDT)
• showing fixed number of frames as the animation
  • Jérôme Hénin (Sat Feb 26 2011 - 07:43:45 CST)
  • Jérôme Hénin (Sat Feb 26 2011 - 08:01:58 CST)
  • Lin, Kan-Ju (Fri Feb 25 2011 - 13:27:26 CST)
• Showing frame number on display?
  • Bryan Roessler (Thu Aug 09 2012 - 11:12:02 CDT)
  • John Stone (Wed Aug 08 2012 - 16:57:18 CDT)
  • Peter C. Lai (Wed Aug 08 2012 - 16:49:54 CDT)
  • John Stone (Wed Aug 08 2012 - 16:43:00 CDT)
  • Peter C. Lai (Wed Aug 08 2012 - 16:35:41 CDT)
  • Bryan Roessler (Wed Aug 08 2012 - 12:04:58 CDT)
• showing the backbone trace of a cyclic peptide
  • Rex Palmer (Thu Aug 26 2010 - 14:45:33 CDT)
• Showing TkConsole on VMD Startup
  • John Stone (Fri Feb 07 2020 - 12:55:12 CST)
  • David Nicholson (Fri Feb 07 2020 - 12:44:08 CST)
• Showing wall potential
  • Mahdi Moosaei (Thu Feb 25 2016 - 09:43:27 CST)
• showperiodic - not self?
  • Axel Kohlmeyer (Mon Jun 13 2011 - 12:51:04 CDT)
  • Jesper Sørensen (Mon Jun 13 2011 - 12:14:44 CDT)
• Shutter glasses on VMD
  • John Stone (Wed Nov 29 2006 - 15:19:25 CST)
  • Robert Kretschmer (Tue Nov 28 2006 - 01:51:31 CST)
  • Cesar Avila (Sun Nov 26 2006 - 16:28:10 CST)
  • Robert Kretschmer (Sat Nov 25 2006 - 15:07:10 CST)
  • Cesar Avila (Sat Nov 25 2006 - 12:14:00 CST)
• shutter glasses with VMD
  • Bogdan Costescu (Thu Mar 02 2006 - 07:05:36 CST)
  • Hannes Barsch (Wed Mar 01 2006 - 10:33:40 CST)
• Side-chain Dihedrals
  • Ajasja LjubetiÄ� (Tue Feb 01 2011 - 16:13:36 CST)
  • Ajasja LjubetiÄ� (Tue Feb 01 2011 - 14:46:23 CST)
  • ban arn (Tue Feb 01 2011 - 05:07:19 CST)
• sidechain atomselection
  • John Stone (Mon Sep 25 2006 - 22:55:10 CDT)
  • Johannes Müllegger (Mon Sep 25 2006 - 13:10:48 CDT)
  • John Stone (Thu Jan 27 2005 - 16:39:24 CST)
  • Daniel Han (Wed Jan 26 2005 - 18:53:55 CST)
• sidechain correlated motions
  • L. Michel Espinoza-Fonseca (Fri Sep 21 2007 - 10:41:21 CDT)
  • Axel Kohlmeyer (Thu Sep 20 2007 - 09:42:59 CDT)
  • L. Michel Espinoza-Fonseca (Wed Sep 19 2007 - 17:18:04 CDT)
• silly rmsd script doesn' t work ...
  • Axel Kohlmeyer (Fri May 30 2008 - 07:49:45 CDT)
  • andrea spitaleri (Fri May 30 2008 - 08:28:40 CDT)
  • Peter Freddolino (Fri May 30 2008 - 08:44:00 CDT)
  • andrea spitaleri (Fri May 30 2008 - 07:17:16 CDT)
• Silver nanoparticle with coating of protein.
  • Raman Preet Singh (Tue Oct 06 2020 - 12:57:28 CDT)
  • Yuvam Bhateja (Tue Oct 06 2020 - 11:17:26 CDT)
• Simple format for animation
  • John Stone (Wed Jul 17 2002 - 15:08:14 CDT)
  • John Stone (Wed Jul 03 2002 - 19:45:33 CDT)
  • Mario Schubert (Fri Jun 28 2002 - 07:19:31 CDT)
• Simple MDFF Tutorial - 1ake does not fit into map
  • Gumbart, JC (Wed Nov 09 2022 - 18:22:54 CST)
  • Stefan Lyne Oliver (Wed Nov 09 2022 - 18:05:03 CST)
  • Daipayan Sarkar (Tue Nov 08 2022 - 15:45:28 CST)
  • Gumbart, JC (Tue Nov 08 2022 - 12:00:56 CST)
  • Daipayan Sarkar (Tue Nov 08 2022 - 01:19:15 CST)
  • Gumbart, JC (Mon Nov 07 2022 - 22:49:33 CST)
  • Gumbart, JC (Sun Nov 06 2022 - 15:28:50 CST)
  • Stefan Lyne Oliver (Fri Nov 04 2022 - 18:52:47 CDT)
  • Stefan Lyne Oliver (Tue Nov 01 2022 - 22:09:45 CDT)
• Simple one-liner?
  • Gustavo Seabra (Wed Jun 07 2006 - 12:24:03 CDT)
  • John Stone (Wed Jun 07 2006 - 11:11:23 CDT)
  • Peter Freddolino (Wed Jun 07 2006 - 10:59:49 CDT)
  • Gustavo Seabra (Wed Jun 07 2006 - 10:56:02 CDT)
• simple plugin
  • John Stone (Thu Jun 01 2006 - 14:02:50 CDT)
  • John Stone (Wed May 31 2006 - 16:25:08 CDT)
  • ikek70 (Wed May 31 2006 - 15:35:53 CDT)
• Simple potential energy calculations in VMD
  • Jan Saam (Mon Jun 23 2003 - 19:19:47 CDT)
  • Dominique Vlieghe (Mon Jun 23 2003 - 10:34:45 CDT)
• simple question
  • John Stone (Wed Sep 03 2003 - 22:39:14 CDT)
  • Andrew Dalke (Tue Sep 02 2003 - 19:40:49 CDT)
  • Justin Gullingsrud (Tue Sep 02 2003 - 19:35:05 CDT)
  • Ioana Cozmuta (Tue Sep 02 2003 - 19:05:41 CDT)
• Simple Question regarding psf generation
  • Gianluca Interlandi (Tue Apr 19 2011 - 11:05:21 CDT)
  • Axel Kohlmeyer (Tue Apr 19 2011 - 09:24:57 CDT)
  • Christian Wohlschlager (Tue Apr 19 2011 - 08:09:15 CDT)
• simple script question
  • Geist, Norman (Sun Jun 12 2022 - 14:11:15 CDT)
  • Geist, Norman (Fri Jun 10 2022 - 02:05:21 CDT)
  • Ashar Malik (Fri Jun 10 2022 - 02:08:03 CDT)
  • michaelmorgan937_at_gmail.com (Fri Jun 10 2022 - 00:02:39 CDT)
• Simple TCL/Tk question
  • Robert Brunner (Fri Jun 08 2007 - 14:55:20 CDT)
  • Peter Freddolino (Fri Jun 08 2007 - 11:37:06 CDT)
  • Pavan Ghatty (Fri Jun 08 2007 - 11:04:10 CDT)
• Simplest file format that includes atom color?
  • Arham Amouie (Tue Feb 18 2014 - 05:17:57 CST)
  • Arham Amouie (Tue Feb 18 2014 - 04:52:20 CST)
  • Olaf Lenz (Tue Feb 18 2014 - 04:21:08 CST)
  • Arham Amouie (Tue Feb 18 2014 - 03:59:27 CST)
  • John Stone (Mon Feb 17 2014 - 09:47:17 CST)
  • Olaf Lenz (Mon Feb 17 2014 - 06:29:54 CST)
  • Axel Kohlmeyer (Mon Feb 17 2014 - 06:45:42 CST)
  • Olaf Lenz (Mon Feb 17 2014 - 05:48:56 CST)
  • Olaf Lenz (Mon Feb 17 2014 - 02:44:09 CST)
  • Arham Amouie (Sun Feb 16 2014 - 05:44:20 CST)
  • Arham Amouie (Thu Feb 13 2014 - 05:27:45 CST)
  • Arham Amouie (Thu Feb 13 2014 - 05:06:07 CST)
  • Olaf Lenz (Thu Feb 13 2014 - 02:18:39 CST)
  • Arham Amouie (Wed Feb 12 2014 - 13:28:44 CST)
• simulating proteins with missing resdiues
  • Axel Kohlmeyer (Fri Jul 19 2013 - 11:56:29 CDT)
  • melis.yildirim_at_boun.edu.tr (Fri Jul 19 2013 - 11:01:49 CDT)
• simulation
  • bharat gupta (Wed Nov 30 2011 - 05:50:56 CST)
• simulation box moves in VMD when read lammps trajectory
  • ruiyan (Mon Jul 10 2017 - 17:34:40 CDT)
• simulation image question
  • Mamta Mohan (Wed Sep 17 2008 - 12:42:34 CDT)
  • John Stone (Wed Sep 17 2008 - 12:57:37 CDT)
• simulation in Nitrogen box
  • PaweÅ‚ KÄ™dzierski (Sun Jun 12 2011 - 08:59:40 CDT)
  • sarah k (Sun Jun 12 2011 - 05:57:46 CDT)
  • Axel Kohlmeyer (Sat Jun 11 2011 - 10:21:45 CDT)
  • sarah k (Sat Jun 11 2011 - 09:12:39 CDT)
• Simulation the binding affinity between DNA or RNA with non-natural nucleic acid acid
  • Giacomo Fiorin (Thu Feb 16 2017 - 07:44:40 CST)
  • jrhau lung (Thu Feb 16 2017 - 02:59:41 CST)
• Simulations cutting out due to per-atom velocity
  • Ryan McGreevy (Thu Oct 06 2016 - 15:08:44 CDT)
  • Steven Cohen (Thu Oct 06 2016 - 14:52:05 CDT)
• Simulations with alpha methylated amino acids
  • amin_at_imtech.res.in (Wed Mar 14 2012 - 20:17:04 CDT)
• Sine Cosine
  • Justin Gullingsrud (Sun Mar 14 2004 - 11:02:12 CST)
  • Jérôme Hénin (Sun Mar 14 2004 - 04:32:26 CST)
  • Ahmet Bakan (Sat Mar 13 2004 - 18:06:04 CST)
• single residue mutation
  • Yunfeng Hu (Fri Mar 22 2002 - 14:36:54 CST)
• Situs
  • Suzanne Brewerton (Thu Jun 05 2003 - 03:44:51 CDT)
  • John Stone (Wed Jun 04 2003 - 17:36:45 CDT)
  • John Stone (Wed Jun 04 2003 - 14:03:56 CDT)
  • John Stone (Wed Jun 04 2003 - 13:52:49 CDT)
  • Zampighi, Lorenzo (Wed Jun 04 2003 - 13:46:54 CDT)
  • Suzanne Brewerton (Wed Jun 04 2003 - 09:22:23 CDT)
• size for render
  • Jesper Sørensen (Tue May 24 2011 - 07:24:03 CDT)
  • Axel Kohlmeyer (Tue May 24 2011 - 06:47:25 CDT)
  • Bjoern Olausson (Tue May 24 2011 - 06:34:49 CDT)
  • Kevin Knoops (Tue May 24 2011 - 06:01:15 CDT)
• Size of a protein
  • Axel Kohlmeyer (Wed Apr 29 2009 - 16:50:25 CDT)
  • John Stone (Wed Apr 29 2009 - 16:15:05 CDT)
  • Khaled Barakat (Wed Apr 29 2009 - 16:06:31 CDT)
• size of box
  • Ajasja LjubetiÄ� (Mon Mar 28 2011 - 02:50:18 CDT)
  • Moeed (Mon Mar 28 2011 - 01:10:54 CDT)
• size of output graphics
  • Samuel Flores (Fri Jun 17 2005 - 11:41:37 CDT)
• Size of POPC membrane
  • Chitrak Gupta (Fri Oct 07 2016 - 05:52:26 CDT)
  • Ajasja LjubetiÄ� (Fri Oct 07 2016 - 04:49:36 CDT)
  • Roshan Shrestha (Fri Oct 07 2016 - 04:27:11 CDT)
• skip frames in dcd file=> no effect?
  • M. Emal Alekozai (Thu May 18 2006 - 06:34:08 CDT)
  • Peter Freddolino (Mon May 15 2006 - 09:35:43 CDT)
  • Leonardo G. Trabuco (Mon May 15 2006 - 09:27:47 CDT)
  • Marc Q. Ma (Mon May 15 2006 - 09:19:14 CDT)
  • Leonardo G. Trabuco (Mon May 15 2006 - 07:50:50 CDT)
  • M. Emal Alekozai (Mon May 15 2006 - 06:58:09 CDT)
• Skip frames in writing shorter trajectory
  • Leonardo Trabuco (Mon Jan 29 2007 - 14:26:09 CST)
  • Neelanjana Sengupta (Mon Jan 29 2007 - 11:56:10 CST)
• skipping frames in hbonding script
  • YOLANDA SMALL (Sun May 15 2005 - 11:39:03 CDT)
• slice image
  • John Stone (Fri Dec 20 2013 - 12:28:35 CST)
  • Thomas C Bishop (Tue Dec 17 2013 - 20:24:26 CST)
  • Tomek Wlodarski (Tue Dec 17 2013 - 11:09:38 CST)
• Slice through molecule
  • Axel Kohlmeyer (Wed May 11 2011 - 09:16:40 CDT)
  • Jennifer Williams (Wed May 11 2011 - 06:32:13 CDT)
• slicing
  • Axel Kohlmeyer (Wed Sep 06 2006 - 11:46:23 CDT)
  • pinisetty dinesh (Wed Sep 06 2006 - 11:29:48 CDT)
• Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux
  • John Stone (Wed May 29 2013 - 13:36:10 CDT)
  • Jack Bulat (Wed May 29 2013 - 13:29:58 CDT)
  • John Stone (Mon Apr 15 2013 - 09:51:45 CDT)
  • Bogdan Costescu (Mon Apr 15 2013 - 05:51:10 CDT)
  • John Stone (Thu Mar 21 2013 - 10:43:25 CDT)
  • Bogdan Costescu (Mon Mar 18 2013 - 07:19:09 CDT)
  • John Stone (Fri Mar 15 2013 - 09:25:32 CDT)
  • John Stone (Fri Mar 08 2013 - 13:09:14 CST)
  • Bogdan Costescu (Fri Mar 08 2013 - 11:56:12 CST)
  • John Stone (Tue Mar 05 2013 - 15:27:41 CST)
  • Bogdan Costescu (Tue Mar 05 2013 - 14:01:21 CST)
• Slow down the update speed in animation
  • John Stone (Tue Aug 10 2004 - 22:15:44 CDT)
  • Shirley Li (Tue Aug 10 2004 - 17:13:39 CDT)
• Slow file importing and movie generating at Linux system
  • John Stone (Thu Sep 02 2004 - 11:24:43 CDT)
  • Shirley Li (Thu Sep 02 2004 - 10:14:34 CDT)
  • John Stone (Wed Sep 01 2004 - 21:10:37 CDT)
  • Shirley Li (Wed Sep 01 2004 - 19:51:22 CDT)
  • John Stone (Thu Aug 26 2004 - 14:12:03 CDT)
  • Shirley Li (Thu Aug 26 2004 - 12:32:03 CDT)
• Slow file importing and movie generating in Linux system
  • Shirley Li (Thu Sep 02 2004 - 19:24:33 CDT)
  • John Stone (Thu Sep 02 2004 - 12:37:07 CDT)
  • Shirley Li (Thu Sep 02 2004 - 10:04:33 CDT)
• Slow mail deliver for next day or so...
  • John Stone (Fri Jul 25 2008 - 15:15:09 CDT)
• Slow tcl/tk script for trajectory analysis
  • Jian Zou (Fri May 16 2008 - 15:23:46 CDT)
  • Axel Kohlmeyer (Fri May 16 2008 - 14:46:11 CDT)
  • John Stone (Fri May 16 2008 - 14:45:49 CDT)
  • Alberto Sergio Garay (Fri May 16 2008 - 14:34:40 CDT)
• slow visualization using molecular representations with VMD 1.8.7 on mac
  • John Stone (Tue Jan 05 2010 - 08:59:04 CST)
  • Matthieu Chavent (Tue Jan 05 2010 - 03:47:17 CST)
• slow vmd - it works now!!!
  • Olya Kravchenko (Wed May 12 2004 - 16:03:49 CDT)
• Slower FPS in dual monitor systems?
  • Axel Kohlmeyer (Thu Jan 27 2011 - 08:17:19 CST)
  • Ramon Crehuet (Thu Jan 27 2011 - 07:24:03 CST)
• slower trajectory loading when CUDA support is enabled
  • John Stone (Thu Feb 25 2010 - 15:51:50 CST)
  • Michel Espinoza-Fonseca (Thu Feb 25 2010 - 15:59:32 CST)
  • Michel Espinoza-Fonseca (Thu Feb 25 2010 - 15:48:00 CST)
  • John Stone (Thu Feb 25 2010 - 15:01:19 CST)
  • Michel Espinoza-Fonseca (Thu Feb 25 2010 - 14:35:18 CST)
• slowing down movie maker
  • Axel Kohlmeyer (Wed Feb 17 2010 - 21:24:14 CST)
  • John Stone (Wed Feb 17 2010 - 20:43:50 CST)
  • Samuel Coulbourn Flores (Wed Feb 17 2010 - 20:20:16 CST)
• slowing the movie animation
  • Luis Rosales (Mon Feb 14 2005 - 23:08:44 CST)
  • Axel Kohlmeyer (Mon Feb 14 2005 - 03:45:59 CST)
  • Sunita Patel (Sun Feb 13 2005 - 09:52:50 CST)
• Small annoyance with tachion
  • Mario Valle (Tue Feb 27 2007 - 03:30:35 CST)
  • Mario Valle (Mon Feb 26 2007 - 22:19:28 CST)
  • John Stone (Wed Feb 21 2007 - 17:27:18 CST)
  • John Stone (Sun Feb 18 2007 - 20:45:22 CST)
  • John Stone (Sat Feb 17 2007 - 12:22:25 CST)
  • Mario Valle (Sat Feb 17 2007 - 11:34:46 CST)
• Small bugfix for NAMD Plot
  • Pawel Kedzierski (Sat Dec 13 2014 - 03:33:28 CST)
  • John Stone (Fri Dec 12 2014 - 10:48:19 CST)
  • Pawel Kedzierski (Fri Dec 12 2014 - 02:35:54 CST)
• small figures
  • Mark Formaneck (Sun Aug 21 2005 - 20:11:50 CDT)
  • Dallas B. Warren (Sun Aug 21 2005 - 18:51:33 CDT)
  • JC Gumbart (Fri Aug 19 2005 - 12:01:43 CDT)
  • Anna Karawajczyk (Fri Aug 19 2005 - 07:47:30 CDT)
• Small molecules
  • Jay Shore (Sun Oct 14 2007 - 22:42:42 CDT)
  • Peter Freddolino (Sat Oct 13 2007 - 17:25:13 CDT)
  • L. Michel Espinoza-Fonseca (Fri Oct 12 2007 - 18:44:00 CDT)
  • Amit (Fri Oct 12 2007 - 18:02:51 CDT)
• Small molecules alignment with VMD
  • L. Michel Espinoza-Fonseca (Mon Jun 05 2006 - 10:52:23 CDT)
  • John Stone (Mon Jun 05 2006 - 10:34:29 CDT)
  • Alexe Bojovschi (Sun Jun 04 2006 - 23:16:47 CDT)
• small query...
  • Leonardo Trabuco (Fri Aug 18 2006 - 15:25:34 CDT)
  • hl332_at_drexel.edu (Fri Aug 18 2006 - 11:17:25 CDT)
• SMD
  • Ekta Khurana (Mon Feb 07 2005 - 13:57:23 CST)
  • Giovanni Bellesia (Mon Feb 07 2005 - 13:19:24 CST)
  • Marc Q. Ma (Mon Feb 07 2005 - 12:24:04 CST)
  • John Stone (Mon Feb 07 2005 - 10:33:32 CST)
  • Ekta Khurana (Mon Feb 07 2005 - 10:28:24 CST)
• smd analysis
  • Narender Singh Maan (Mon Jan 29 2007 - 14:47:02 CST)
• SMD Force TCL Script in NAMD
  • Allen, Caley R (Sun May 01 2016 - 19:54:09 CDT)
• SMD question
  • Edward Lyman (Thu Feb 19 2009 - 14:00:32 CST)
• SMD specifying atom selection
  • John Stone (Tue Jan 07 2020 - 14:20:02 CST)
  • surya narayanan chandrasekaran (Wed Jan 01 2020 - 22:57:48 CST)
• SMD: constant velocity or force pulling?
  • Ioana Cozmuta (Thu Oct 30 2003 - 21:02:54 CST)
• SMD: constant velocity output analysis (Force and displacement plot from output file)
  • Keshab Thapa (Sun Nov 12 2017 - 23:44:48 CST)
• SMD: Group of atoms COM fixed?
  • Vani Krishna (Thu Sep 02 2004 - 20:58:44 CDT)
• smooth movie
  • John Stone (Sat Mar 16 2002 - 11:57:54 CST)
  • Sanjeev B.S. (Sat Mar 16 2002 - 11:24:39 CST)
• smoothed trajectory
  • Nicolas Sapay (Fri Feb 18 2005 - 02:45:07 CST)
  • Jérôme Hénin (Thu Feb 17 2005 - 13:59:19 CST)
  • Jan Saam (Thu Feb 17 2005 - 11:52:30 CST)
  • Nicolas Sapay (Thu Feb 17 2005 - 10:06:41 CST)
• Smoothening labels in vmd
  • amin sagar (Tue Oct 10 2017 - 10:57:57 CDT)
  • John Stone (Tue Oct 10 2017 - 10:15:31 CDT)
  • Vikas Dubey (Tue Oct 10 2017 - 07:09:01 CDT)
• Smoothing
  • Vermaas, Joshua (Thu Apr 19 2018 - 18:58:57 CDT)
  • McGuire, Kelly (Thu Apr 19 2018 - 17:48:05 CDT)
  • Vermaas, Joshua (Thu Apr 19 2018 - 17:39:37 CDT)
  • McGuire, Kelly (Thu Apr 19 2018 - 16:12:01 CDT)
• smoothing from the command line
  • Justin Gullingsrud (Sun Dec 15 2002 - 23:20:12 CST)
  • Vlad Cojocaru (Fri Dec 13 2002 - 08:55:17 CST)
• Smoothing PBC jumps across PBC
  • Diego Gomes (Mon Nov 20 2023 - 22:34:43 CST)
  • Jason Smith (Thu Nov 16 2023 - 15:28:49 CST)
  • Patrick Charchar (Wed Nov 15 2023 - 23:27:39 CST)
• smooting structure
  • Myunggi Yi (Wed Sep 19 2007 - 12:59:12 CDT)
  • John Stone (Wed Sep 19 2007 - 11:57:16 CDT)
  • Myunggi Yi (Wed Sep 19 2007 - 11:38:23 CDT)
• SMP, coord transform, cpu usage
  • John Stone (Mon Oct 08 2001 - 10:11:18 CDT)
  • R. M. Fesinmeyer (Sat Oct 06 2001 - 22:57:14 CDT)
  • John Stone (Fri Oct 05 2001 - 14:40:30 CDT)
  • Robert Matthew Fesinmeyer (Wed Oct 03 2001 - 17:42:01 CDT)
• snapshot including molecules in a distance interval
  • Ali Alizadeh (Mon May 26 2014 - 05:55:37 CDT)
• snapshot not compatible with -dispdev text?
  • Emmanuel Levy (Mon Mar 10 2008 - 18:19:49 CDT)
  • John Stone (Mon Mar 10 2008 - 17:46:22 CDT)
  • Axel Kohlmeyer (Mon Mar 10 2008 - 17:35:52 CDT)
  • Emmanuel Levy (Mon Mar 10 2008 - 17:08:02 CDT)
• snapshots to pdb
  • John Stone (Thu Mar 31 2005 - 13:02:42 CST)
  • Michel Espinoza-Fonseca (Mon Mar 28 2005 - 14:12:21 CST)
• snow leopard CUDA and VMD 1.9
  • Passerone, Daniele (Fri Mar 11 2011 - 12:14:55 CST)
  • John Stone (Fri Mar 11 2011 - 10:50:41 CST)
  • Passerone, Daniele (Fri Mar 11 2011 - 09:29:30 CST)
• Sodium within distance
  • Parker de Waal (Mon Jul 06 2015 - 21:56:39 CDT)
• Software for molecular electrostatic calculations
  • Rabeta Yeasmin (Wed Aug 09 2017 - 13:07:34 CDT)
• Software to create 3D PDF documents
  • John Stone (Fri Mar 25 2011 - 22:01:53 CDT)
  • Petridis, Loukas (Fri Mar 25 2011 - 14:03:03 CDT)
• solid color clipping plane - render with "scratches"
  • John Stone (Tue Oct 25 2005 - 14:08:51 CDT)
  • Arturas (Tue Oct 25 2005 - 04:49:45 CDT)
• Solid Support Problem
  • Peter Freddolino (Thu Sep 18 2008 - 22:10:46 CDT)
  • Christopher Hartshorn (Thu Sep 18 2008 - 13:33:07 CDT)
• solute + solvent temperature?
  • John Stone (Fri May 16 2003 - 10:00:27 CDT)
  • Charles McCallum (Fri May 16 2003 - 01:04:12 CDT)
  • Ioana Cozmuta (Thu May 15 2003 - 18:00:23 CDT)
  • John Stone (Thu May 15 2003 - 16:19:58 CDT)
• Solutions for stereo - is CRT technology dead?
  • Warren DeLano (Mon May 22 2006 - 12:34:56 CDT)
  • Benjamin Goldsteen (Mon May 22 2006 - 11:15:44 CDT)
  • John Stone (Mon May 22 2006 - 10:54:02 CDT)
  • Eugen Leitl (Mon May 22 2006 - 07:03:57 CDT)
  • Bogdan Costescu (Mon May 22 2006 - 06:27:49 CDT)
  • Marc Baaden (Mon May 22 2006 - 04:33:17 CDT)
• Solvate
  • John Stone (Wed Sep 15 2004 - 13:23:15 CDT)
  • Shirley Hui (Tue Sep 14 2004 - 08:16:14 CDT)
• Solvate 1.1.1
  • chandran karunakaran (Tue Mar 25 2003 - 13:05:23 CST)
• Solvate 1.2 problem option -ion
  • John Stone (Fri Jun 15 2007 - 16:12:51 CDT)
  • luca.dallaglio2_at_studio.unibo.it (Thu Jun 14 2007 - 07:02:39 CDT)
• solvate a molecule
  • Chang, Christopher (Tue Sep 23 2008 - 11:47:37 CDT)
  • John Stone (Mon Sep 22 2008 - 23:59:54 CDT)
  • Rudra Banerjee (Mon Sep 22 2008 - 23:52:34 CDT)
  • Rudra Banerjee (Sat Sep 20 2008 - 09:47:50 CDT)
  • John Stone (Sat Sep 20 2008 - 02:12:59 CDT)
  • Rudra Banerjee (Sat Sep 20 2008 - 01:08:03 CDT)
• Solvate a Protein for Explicit Solvent MD
  • Babban Mia (Tue Aug 09 2011 - 04:16:03 CDT)
• Solvate and VMD on OS X
  • Justin Gullingsrud (Sat Nov 13 2004 - 12:25:45 CST)
  • Eric Peterson (Fri Nov 12 2004 - 20:20:28 CST)
• solvate crashes
  • Irene Newhouse (Thu Nov 22 2007 - 14:25:46 CST)
  • L. Michel Espinoza-Fonseca (Thu Nov 22 2007 - 05:45:12 CST)
  • Irene Newhouse (Thu Nov 22 2007 - 04:02:33 CST)
• solvate documentation.
  • Gadi Oron (Thu Oct 17 2002 - 07:05:06 CDT)
• solvate error
  • Axel Kohlmeyer (Thu Nov 19 2009 - 12:29:08 CST)
  • Rebecca Alexander (Thu Nov 19 2009 - 11:48:42 CST)
• solvate fails to set coordinates for the first few residues of the first chain?
  • Olya Kravchenko (Wed Apr 20 2016 - 10:57:07 CDT)
  • Ashar Malik (Wed Apr 20 2016 - 00:29:41 CDT)
  • Ashar Malik (Tue Apr 19 2016 - 19:38:54 CDT)
  • Ashar Malik (Tue Apr 19 2016 - 19:33:32 CDT)
  • Josh Vermaas (Tue Apr 19 2016 - 17:09:00 CDT)
  • Ashar Malik (Tue Apr 19 2016 - 16:17:17 CDT)
  • Josh Vermaas (Tue Apr 19 2016 - 16:27:38 CDT)
  • Olya Kravchenko (Tue Apr 19 2016 - 14:59:01 CDT)
• solvate function
  • John Stone (Sat Jan 10 2004 - 17:33:36 CST)
  • zhilei chen (Sat Jan 10 2004 - 12:18:53 CST)
• solvate nonstandard patch error
  • Peter Freddolino (Wed Jun 16 2010 - 11:52:23 CDT)
  • Harold Hatch (Wed Jun 16 2010 - 10:42:50 CDT)
• solvate numbering problems
  • John Stone (Wed Apr 06 2005 - 11:14:38 CDT)
  • Christina Payne (Wed Apr 06 2005 - 11:05:39 CDT)
• solvate option in vmd
  • John Stone (Wed Jan 15 2003 - 10:29:36 CST)
  • Ioana Cozmuta (Tue Jan 14 2003 - 20:05:46 CST)
• Solvate package
  • Axel Kohlmeyer (Wed Sep 05 2007 - 14:05:45 CDT)
  • brmorgan_at_clarku.edu (Wed Sep 05 2007 - 13:02:03 CDT)
  • Brian Bennion (Wed Mar 17 2004 - 11:39:15 CST)
  • John Stone (Mon Mar 15 2004 - 13:55:29 CST)
  • Satyavani Vemparala (Wed Mar 10 2004 - 18:23:33 CST)
• Solvate plug-in
  • Axel Kohlmeyer (Tue Aug 10 2010 - 23:28:11 CDT)
  • Charles Zhao (Tue Aug 10 2010 - 21:53:22 CDT)
• Solvate Plug-In -b Boundary variable
  • Akshay Patny (Thu Sep 21 2006 - 10:18:10 CDT)
• Solvate plugin
  • Luis Rosales (Wed Apr 27 2005 - 04:12:08 CDT)
  • Huaer XC (Wed Apr 27 2005 - 01:28:28 CDT)
• Solvate Plugin Error - Reg
  • John Stone (Mon Aug 27 2018 - 11:04:24 CDT)
  • Mani Kandan (Mon Aug 27 2018 - 10:56:31 CDT)
  • Vermaas, Joshua (Mon Aug 27 2018 - 07:56:56 CDT)
  • Mani Kandan (Mon Aug 27 2018 - 04:31:18 CDT)
  • Vermaas, Joshua (Tue Jul 31 2018 - 13:22:47 CDT)
  • John Stone (Tue Jul 31 2018 - 13:17:36 CDT)
  • John Stone (Tue Jul 31 2018 - 11:57:52 CDT)
  • Mani Kandan (Tue Jul 31 2018 - 12:08:20 CDT)
  • John Stone (Tue Jul 31 2018 - 11:53:39 CDT)
  • Mani Kandan (Tue Jul 31 2018 - 06:24:53 CDT)
• Solvate Plugin: Why "Rotate to minimize volume" along 2 instead of 3 axes?
  • John Stone (Mon Sep 22 2014 - 11:33:40 CDT)
  • Josh Vermaas (Mon Sep 22 2014 - 10:58:56 CDT)
  • Sebastian Stolzenberg (Mon Sep 22 2014 - 10:22:13 CDT)
  • Sebastian Stolzenberg (Mon Sep 22 2014 - 09:59:35 CDT)
• solvate problem
  • vsharma (Tue Dec 07 2004 - 08:26:00 CST)
  • vivek sharma (Tue Dec 07 2004 - 06:23:38 CST)
  • John Stone (Mon Dec 06 2004 - 09:42:54 CST)
  • vivek sharma (Wed Dec 01 2004 - 11:58:46 CST)
• solvate protein in triclinic box
  • Amir Suhail (Wed Oct 02 2019 - 10:37:26 CDT)
• solvate v1.3 bug
  • Íõ—² (Thu May 14 2009 - 07:43:23 CDT)
• Solvate with a define number of water molecule
  • Pawel Kedzierski (Fri Apr 05 2013 - 05:32:38 CDT)
  • Yann Fichou (Thu Apr 04 2013 - 12:54:22 CDT)
• Solvate with LES (Locally Enhanced Sampling) pdb does not work
  • Jim Phillips (Thu Jun 09 2005 - 13:41:38 CDT)
  • Marcin Wojciechowski (Thu Jun 09 2005 - 04:52:29 CDT)
• Solvate-GUI Problem: Collapses Solvent to Origin
  • Peter Freddolino (Mon Oct 26 2009 - 21:31:23 CDT)
  • Joshua Adelman (Mon Oct 26 2009 - 20:03:37 CDT)
• Solvated outside the box
  • Steven Neumann (Mon Oct 01 2012 - 06:29:23 CDT)
  • Olaf Lenz (Mon Oct 01 2012 - 06:24:05 CDT)
  • Steven Neumann (Mon Oct 01 2012 - 05:56:33 CDT)
  • Olaf Lenz (Mon Oct 01 2012 - 04:19:32 CDT)
  • Steven Neumann (Mon Oct 01 2012 - 02:58:44 CDT)
• Solvating a Protein in VMD using NON STANDARD SOLVENT
  • Axel Kohlmeyer (Sun Aug 14 2011 - 00:09:28 CDT)
  • Babban Mia (Sat Aug 13 2011 - 21:39:41 CDT)
  • Babban Mia (Sat Aug 13 2011 - 21:15:32 CDT)
  • Axel Kohlmeyer (Sat Aug 13 2011 - 08:47:57 CDT)
  • Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
  • Axel Kohlmeyer (Sat Aug 13 2011 - 08:22:08 CDT)
  • Babban Mia (Sat Aug 13 2011 - 07:10:18 CDT)
• solvating a water molecule
  • John Stone (Tue Sep 09 2008 - 01:48:46 CDT)
  • gaurav nandrajog (Tue Sep 09 2008 - 01:01:33 CDT)
  • John Stone (Mon Sep 08 2008 - 11:41:45 CDT)
  • Rabab Toubar (Tue Sep 02 2008 - 22:35:50 CDT)
  • John Stone (Tue Sep 02 2008 - 16:16:49 CDT)
  • Rabab Toubar (Tue Sep 02 2008 - 13:54:47 CDT)
• solvating diferent regions in VMD
  • Ranyere Deyler (Mon Dec 14 2009 - 17:07:38 CST)
• Solvating hexagonal unit cell
  • Jérôme Hénin (Thu Oct 06 2011 - 06:15:48 CDT)
  • Leandro Barros da Silva (Wed Oct 05 2011 - 13:00:27 CDT)
• solvating lipid bilayers
  • John Stone (Thu Feb 12 2004 - 17:17:19 CST)
  • Satyavani Vemparala (Wed Feb 11 2004 - 20:30:38 CST)
• Solvating protein in water sucrose solution
  • amin_at_imtech.res.in (Tue Nov 06 2012 - 22:18:43 CST)
  • Axel Kohlmeyer (Tue Nov 06 2012 - 13:47:56 CST)
  • Ajasja LjubetiÄ� (Tue Nov 06 2012 - 13:39:07 CST)
  • amin_at_imtech.res.in (Tue Nov 06 2012 - 11:01:17 CST)
• solvating protein, fixed residue
  • Rudra Banerjee (Mon Jul 28 2008 - 13:01:56 CDT)
  • Axel Kohlmeyer (Mon Jul 28 2008 - 13:52:42 CDT)
• Solvating with Nonaqueous Solvent
  • Axel Kohlmeyer (Thu Dec 15 2011 - 16:38:26 CST)
  • Rajan Vatassery (Thu Dec 15 2011 - 16:58:43 CST)
  • Rajan Vatassery (Thu Dec 15 2011 - 16:30:47 CST)
  • Axel Kohlmeyer (Tue Dec 13 2011 - 14:16:12 CST)
  • Rajan Vatassery (Tue Dec 13 2011 - 12:46:50 CST)
• Solvating with Pre-equilibration ethanol box
  • Raisa Carmen Andeme Ela (Tue Mar 09 2021 - 15:43:10 CST)
• Solvating with TIP4 or SPC
  • Brian Bennion (Wed Aug 04 2004 - 10:43:19 CDT)
  • Alexis Salas (Tue Aug 03 2004 - 16:01:03 CDT)
• solvation
  • John Stone (Wed Sep 17 2008 - 21:46:39 CDT)
  • Mamta Mohan (Wed Sep 17 2008 - 13:28:55 CDT)
  • Axel Kohlmeyer (Fri Jun 06 2008 - 09:04:27 CDT)
  • Katherine Parra (Fri Jun 06 2008 - 08:56:31 CDT)
  • Francesco Pietra (Thu Aug 30 2007 - 15:05:59 CDT)
  • Anuradha Mittal (Wed Mar 22 2006 - 17:38:38 CST)
• solvation and box size
  • Christopher Gillespie (Mon Jul 28 2008 - 07:33:37 CDT)
  • Axel Kohlmeyer (Mon Jul 28 2008 - 06:30:07 CDT)
  • Roman Petrenko (Mon Jul 28 2008 - 06:52:08 CDT)
  • Sue Legge (Mon Jul 28 2008 - 01:25:43 CDT)
• Solvation Box
  • Leandro Martínez (Tue Sep 23 2008 - 13:20:52 CDT)
  • Robert Brunner (Tue Sep 23 2008 - 11:32:42 CDT)
  • Navdeep (Fri Sep 19 2008 - 16:43:25 CDT)
• Solvation energies using implicit ligand sampling
  • saam (Mon May 04 2009 - 14:31:31 CDT)
  • Richard Daigle (Mon May 04 2009 - 14:06:22 CDT)
  • John Stone (Mon May 04 2009 - 13:49:44 CDT)
  • Richard Daigle (Mon May 04 2009 - 12:21:41 CDT)
• Solvation in mixed solvent
  • Josh Vermaas (Thu Apr 30 2020 - 07:45:14 CDT)
  • HOUSTON Douglas (Thu Apr 30 2020 - 06:17:23 CDT)
• Solvation in VMD using Non Standard Solvent System
  • Babban Mia (Wed Aug 10 2011 - 07:35:32 CDT)
• Solvation of a molecule
  • Katherine Parra (Thu Jun 05 2008 - 08:15:41 CDT)
• Solvation using Charmm36 TIP3P
  • João Ribeiro (Fri Jun 22 2018 - 09:07:03 CDT)
  • Muthukumaran Rajagopalan (Fri Jun 22 2018 - 02:31:54 CDT)
• SOLVED Fwd: Merge structures coordinate failure
  • Francesco Pietra (Sun Jul 28 2013 - 05:06:14 CDT)
• SOLVED with chimera-vmd
  • Francesco Pietra (Wed May 04 2011 - 02:45:21 CDT)
• SOLVED: Failure to run namd-cuda with gtx-470
  • Francesco Pietra (Fri Jul 22 2011 - 09:56:34 CDT)
• Solvent accessibility with sasa
  • John Stone (Thu Jan 18 2007 - 16:33:52 CST)
  • Peter Hains (Thu Jan 18 2007 - 15:34:16 CST)
• Solvent accessible area/Radii definition
  • Hui-Hsu Tsai (Thu Dec 16 2004 - 15:44:26 CST)
  • John Stone (Thu Dec 16 2004 - 13:55:00 CST)
  • Vani Krishna (Thu Dec 09 2004 - 10:20:37 CST)
• Solvent Accessible Surface
  • Edward Lyman (Thu Aug 12 2010 - 14:10:25 CDT)
  • R. Johnson (Thu Aug 12 2010 - 13:26:48 CDT)
• solvent accessible surface area
  • Peter Freddolino (Sat May 23 2009 - 14:19:37 CDT)
  • zizi moradi (Sat May 23 2009 - 13:11:19 CDT)
  • John Stone (Wed Apr 22 2009 - 14:14:01 CDT)
  • zizi moradi (Sun Apr 19 2009 - 09:01:49 CDT)
  • John Stone (Wed Dec 08 2004 - 22:51:02 CST)
  • Vani Krishna (Wed Dec 08 2004 - 18:07:55 CST)
• Solvent accessible surface area calculation
  • L. Michel Espinoza-Fonseca (Mon Mar 10 2008 - 14:41:08 CDT)
• Solvent accessible surface area change during MD run
  • Pat Yee (Fri Oct 01 2010 - 19:33:41 CDT)
  • John Stone (Tue Sep 28 2010 - 10:53:46 CDT)
  • hirdesh kumar (Tue Sep 28 2010 - 04:54:14 CDT)
• solvent mixture
  • Ekta Khurana (Wed Feb 02 2005 - 20:44:48 CST)
• Solvent PDB and PSF Files
  • Axel Kohlmeyer (Thu Mar 29 2018 - 12:58:02 CDT)
  • Vermaas, Joshua (Thu Mar 29 2018 - 12:28:40 CDT)
  • Brian Radak (Thu Mar 29 2018 - 11:40:26 CDT)
  • Alex Saad-Falcon (Thu Mar 29 2018 - 10:50:45 CDT)
• solvent radius
  • setyanto md (Tue Mar 20 2012 - 01:03:29 CDT)
• solvent_box_type
  • lara lara (Sat Oct 01 2011 - 08:13:43 CDT)
• solventplugin-Watermodels
  • Salvador H-V (Tue Mar 23 2010 - 13:08:13 CDT)
• Some bugs and questions about the 1.9.4a29 version
  • Bart Bruininks (Mon Apr 29 2019 - 03:57:59 CDT)
• Some comments about stereo with nvidia cards & shutter glasses
  • Bogdan Costescu (Mon May 05 2003 - 11:58:14 CDT)
  • John Stone (Wed Apr 30 2003 - 20:45:29 CDT)
  • Warren L. DeLano (Wed Apr 30 2003 - 15:08:19 CDT)
  • Marc Baaden (Wed Apr 30 2003 - 02:43:58 CDT)
  • Michael Redmond (Tue Apr 22 2003 - 17:15:22 CDT)
  • Marc Baaden (Tue Apr 15 2003 - 03:03:31 CDT)
• Some errors
  • John Stone (Mon Mar 27 2006 - 19:09:30 CST)
  • angel (Mon Mar 27 2006 - 18:51:51 CST)
• Some improvements for 1.8.2
  • Justin Gullingsrud (Sat Jul 26 2003 - 16:08:56 CDT)
  • Teletchéa Stéphane (Fri Jul 25 2003 - 21:06:37 CDT)
  • Hannes Loeffler (Fri Jul 25 2003 - 20:58:52 CDT)
  • John Stone (Fri Jul 25 2003 - 20:37:46 CDT)
  • Andrew Dalke (Fri Jul 25 2003 - 20:18:57 CDT)
  • Teletchéa Stéphane (Fri Jul 25 2003 - 19:55:17 CDT)
• Some macOS code simplification
  • John Stone (Tue Dec 06 2016 - 17:55:01 CST)
  • FX (Fri Dec 02 2016 - 07:42:09 CST)
• Some newbie questions
  • John Stone (Sun Apr 22 2001 - 16:17:35 CDT)
  • B. Bennion (Fri Apr 20 2001 - 10:40:20 CDT)
  • Arent, Michael (Fri Apr 20 2001 - 08:44:27 CDT)
• some parameters for TIP3P
  • Axel Kohlmeyer (Fri Jul 21 2006 - 18:25:19 CDT)
  • Margaret Shun Cheung (Fri Jul 21 2006 - 16:42:29 CDT)
  • Axel Kohlmeyer (Fri Jul 21 2006 - 16:38:07 CDT)
  • Justin Gullingsrud (Fri Jul 21 2006 - 16:36:53 CDT)
  • Giovanni Bellesia (Fri Jul 21 2006 - 16:34:57 CDT)
  • Margaret Shun Cheung (Fri Jul 21 2006 - 14:48:33 CDT)
• Some pdb file contains many frames : How Can I retrieve all in a frame...
  • John Stone (Mon Feb 16 2004 - 17:25:36 CST)
  • John Stone (Mon Feb 16 2004 - 11:50:58 CST)
  • John Stone (Fri Feb 13 2004 - 11:31:34 CST)
  • piriboy (Thu Feb 12 2004 - 18:50:30 CST)
• some principles for building a topology file?
  • Irene Newhouse (Mon Jul 09 2007 - 22:45:09 CDT)
  • Peter Freddolino (Mon Jul 09 2007 - 21:14:31 CDT)
  • Irene Newhouse (Mon Jul 09 2007 - 15:27:01 CDT)
• some questions about the RDF plugin
  • Axel Kohlmeyer (Mon Apr 07 2008 - 16:01:54 CDT)
  • Axel Kohlmeyer (Mon Apr 07 2008 - 15:32:29 CDT)
  • Raul Araya (Mon Apr 07 2008 - 15:23:32 CDT)
• Some useful scripts for people using CHARMM-36 glycans
  • Tristan Croll (Thu Mar 20 2014 - 01:20:29 CDT)
• some visualization challenges
  • John Stone (Tue May 18 2004 - 09:21:44 CDT)
  • John Stone (Tue May 18 2004 - 00:58:22 CDT)
  • Axel Kohlmeyer (Mon May 17 2004 - 15:07:43 CDT)
  • John Stone (Sun May 16 2004 - 20:25:59 CDT)
  • Axel Kohlmeyer (Sun May 16 2004 - 14:03:11 CDT)
• some vmd mail list webpage cannot be accessed
  • John Stone (Thu May 26 2016 - 11:31:29 CDT)
  • sunyeping (Wed May 25 2016 - 02:19:57 CDT)
• Some VMD questions
  • Axel Kohlmeyer (Tue Jun 30 2009 - 13:56:02 CDT)
  • Daniel Gaston (Tue Jun 30 2009 - 13:10:14 CDT)
  • Steve Jensen (Tue Jun 30 2009 - 12:27:01 CDT)
• Something about loading LAMMPS trace file
  • John Stone (Wed Mar 22 2006 - 01:55:19 CST)
  • q=CF=20=B3=C2?= (Wed Mar 22 2006 - 01:45:12 CST)
  • q=CF=20=B3=C2?= (Wed Mar 22 2006 - 01:45:23 CST)
• something about simulation of small molecules in NAMD
  • John Stone (Thu May 25 2006 - 14:20:40 CDT)
  • q=CF=20=B3=C2?= (Thu May 25 2006 - 05:02:31 CDT)
• Sorry ... the test was because of .....
  • Vlad Cojocaru (Fri Jan 30 2004 - 10:07:15 CST)
• sorry John .. I found them
  • John Stone (Thu Dec 08 2005 - 15:16:30 CST)
  • Cojocaru,Vlad (Thu Dec 08 2005 - 15:07:07 CST)
• Sorry! Forgot to include the name of the molecule
  • Sergei Izrailev (Mon Apr 23 2001 - 13:23:21 CDT)
  • Justin Gullingsrud (Sun Apr 22 2001 - 15:44:57 CDT)
  • M. Arent (Sun Apr 22 2001 - 15:32:22 CDT)
• sorry...I got it!!!
  • Vlad Cojocaru (Thu Apr 01 2004 - 10:07:47 CST)
• Sorting as an increasing function of the integers in suffices
  • Prathit Chatterjee (Mon Nov 16 2020 - 14:23:42 CST)
  • John Stone (Mon Nov 16 2020 - 13:18:19 CST)
  • Axel Kohlmeyer (Mon Nov 16 2020 - 07:47:14 CST)
  • Prathit Chatterjee (Mon Nov 16 2020 - 05:31:29 CST)
• Source code for ringsize?
  • Vermaas, Joshua (Fri Mar 15 2019 - 16:25:45 CDT)
  • Robin Betz (Fri Mar 15 2019 - 16:04:23 CDT)
  • MD Simulation (Fri Mar 15 2019 - 14:30:07 CDT)
• Source Command
  • Salvatore Mario Cosseddu (Thu Feb 09 2012 - 13:42:10 CST)
  • MARK PLUMMER (Thu Feb 09 2012 - 09:53:36 CST)
  • MARK PLUMMER (Thu Feb 09 2012 - 10:06:42 CST)
• source download
  • Axel Kohlmeyer (Mon Apr 16 2018 - 08:43:31 CDT)
  • andre padilla (Mon Apr 16 2018 - 08:17:40 CDT)
• sources
  • John Stone (Fri Nov 08 2002 - 11:36:08 CST)
  • Dmitry Kovalsky (Fri Nov 08 2002 - 06:39:40 CST)
• Space between protein and simulaton cell boundaries
  • ramin_ekh_at_REMOVE_yahoo.com (Sun May 11 2014 - 09:30:33 CDT)
• Space distribution functions
  • Axel Kohlmeyer (Fri Dec 26 2008 - 14:15:58 CST)
  • aneesh cna (Wed Dec 24 2008 - 23:08:03 CST)
• Spaceball and OSX
  • John Stone (Tue Apr 21 2009 - 13:49:36 CDT)
  • JT (Tue Apr 21 2009 - 13:15:22 CDT)
  • John Stone (Tue Apr 21 2009 - 12:34:34 CDT)
  • JT (Tue Apr 21 2009 - 12:53:31 CDT)
  • JT (Tue Apr 21 2009 - 12:30:04 CDT)
• Spaceball navigator - making movies
  • Michael Doig (Wed Aug 17 2011 - 03:58:38 CDT)
  • John Stone (Tue Aug 16 2011 - 10:16:56 CDT)
  • Michael Doig (Tue Aug 16 2011 - 06:16:42 CDT)
• SPACEBALLS
  • John Stone (Wed Aug 21 2002 - 17:39:15 CDT)
  • Jill Vickery (Wed Aug 21 2002 - 17:19:08 CDT)
• SPACEBALLS .. in Europe ?
  • John Stone (Thu Aug 22 2002 - 09:50:12 CDT)
  • Surjit Dixit (Thu Aug 22 2002 - 08:02:47 CDT)
  • Marc Baaden (Thu Aug 22 2002 - 03:23:49 CDT)
• spaceballs, etc.
  • John Stone (Fri Dec 09 2005 - 09:54:11 CST)
  • Eugen Leitl (Fri Dec 09 2005 - 03:26:35 CST)
  • John Stone (Thu Dec 08 2005 - 16:39:36 CST)
  • Eugen Leitl (Thu Dec 08 2005 - 16:33:53 CST)
• spacemice
  • John Stone (Tue Sep 23 2003 - 13:25:41 CDT)
  • Philip Fowler (Fri Sep 19 2003 - 11:09:11 CDT)
• SpaceNavigator
  • John Stone (Wed Jun 11 2008 - 02:53:39 CDT)
  • John Stone (Tue Dec 04 2007 - 22:57:22 CST)
  • Carsten Olbrich (Tue Dec 04 2007 - 01:21:46 CST)
  • John Stone (Mon Dec 03 2007 - 18:52:09 CST)
  • Carsten Olbrich (Mon Dec 03 2007 - 07:46:02 CST)
  • John Stone (Fri Nov 30 2007 - 12:32:28 CST)
  • Carsten Olbrich (Fri Nov 30 2007 - 10:58:32 CST)
  • John Stone (Fri Nov 30 2007 - 10:24:02 CST)
  • Carsten Olbrich (Fri Nov 30 2007 - 10:16:46 CST)
  • John Stone (Thu Nov 29 2007 - 12:16:55 CST)
  • Carsten Olbrich (Thu Nov 29 2007 - 11:23:01 CST)
• SpaceNavigator on Win7 64 bit
  • James Ryley (Tue Jul 31 2012 - 12:25:12 CDT)
  • John Stone (Tue Jul 31 2012 - 11:44:32 CDT)
  • James Ryley (Mon Jul 30 2012 - 20:53:14 CDT)
• SpaceNavigator test builds (last note before I go offline!)
  • John Stone (Fri Jun 20 2008 - 02:04:50 CDT)
• SpaceNavigator: How can I grab a molecule?
  • MVACKEL (Sat Sep 08 2012 - 08:59:35 CDT)
• spacial distribution function
  • L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 19:48:02 CST)
  • L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:52:15 CST)
• Spam from my email
  • hanif mahboobi (Wed Nov 23 2011 - 03:38:19 CST)
• sparse volumetric file format
  • r xu (Wed Jul 26 2017 - 15:53:07 CDT)
• Spatial (angular) distribution function
  • John Stone (Wed Feb 15 2012 - 10:17:06 CST)
  • David Cohen-Tanugi (Mon Feb 13 2012 - 13:38:11 CST)
• Spatial Distributionb Functions
  • Oliver Beckstein (Thu Feb 05 2004 - 12:35:41 CST)
  • Axel Kohlmeyer (Thu Feb 05 2004 - 04:12:31 CST)
  • CHAUMONT Alain (Thu Feb 05 2004 - 03:01:46 CST)
• SPC/E Water Model and RigidBonds
  • Joshua D. Moore (Fri Jul 08 2005 - 15:46:41 CDT)
• SPC/E Water models
  • Manoj Dhiman (Wed May 23 2018 - 11:49:44 CDT)
  • Peter Freddolino (Wed May 23 2018 - 11:19:35 CDT)
  • Mani Kandan (Wed May 23 2018 - 11:36:20 CDT)
  • Mani Kandan (Wed May 23 2018 - 04:36:36 CDT)
• specden - IR spectral density calculator plugin
  • Axel Kohlmeyer (Thu Aug 04 2011 - 13:49:06 CDT)
  • Kukol, Andreas (Thu Aug 04 2011 - 03:25:17 CDT)
• Special Christmas binary
  • Andrew Dalke (Fri Dec 20 1996 - 04:01:38 CST)
• special instructions in psfgen for circular proteins?
  • John Stone (Sun Apr 02 2006 - 20:14:28 CDT)
  • Amarda Shehu (Thu Mar 30 2006 - 16:50:02 CST)
• specify a rtf file when generating a psf file.
  • Axel Kohlmeyer (Tue Jun 17 2008 - 14:50:55 CDT)
  • Nicolas Sapay (Tue Jun 17 2008 - 15:28:34 CDT)
  • Peter Freddolino (Tue Jun 17 2008 - 14:32:13 CDT)
  • Nicolas Sapay (Tue Jun 17 2008 - 13:46:22 CDT)
• Specify stride from command line
  • Josh Vermaas (Tue Feb 02 2016 - 09:40:56 CST)
  • Eiros Zamora, Juan (Tue Feb 02 2016 - 04:15:57 CST)
  • Ashar Malik (Thu Jan 28 2016 - 14:19:13 CST)
  • Eiros Zamora, Juan (Thu Jan 28 2016 - 10:07:43 CST)
• specify the bonds between the atoms
  • John Stone (Fri Feb 29 2008 - 14:04:44 CST)
  • massimo camarda (Mon Feb 25 2008 - 01:48:52 CST)
• Specifying distances for bond cutoffs?
  • Axel Kohlmeyer (Wed Oct 13 2004 - 00:46:39 CDT)
  • Hess, Bret (Mon Oct 11 2004 - 18:24:06 CDT)
• specifying path of add on program
  • Dhiraj Srivastava (Fri Nov 08 2019 - 14:57:07 CST)
• spectrum simulation
  • francesco oteri (Sun Feb 24 2013 - 14:57:13 CST)
• speed of movie
  • Axel Kohlmeyer (Sun Jul 13 2008 - 15:49:02 CDT)
  • Mario Valle (Thu Jun 05 2008 - 07:01:28 CDT)
  • gurpreet singh (Thu Jun 05 2008 - 05:40:55 CDT)
• speed of pbc join is slow
  • Deng, Jinxia (Nancy) (Tue Mar 15 2016 - 15:48:41 CDT)
• speed prob
  • Sanjeev B.S. (Tue Nov 26 2002 - 03:14:14 CST)
• Speeding up the VDW drawing method and Tachyon rendering process
  • Andrews, Casey (Wed Nov 27 2013 - 12:28:22 CST)
  • John Stone (Tue Nov 26 2013 - 19:02:31 CST)
  • Andrews, Casey (Tue Nov 26 2013 - 17:53:02 CST)
• Sphere representaion with radius from pdb field "occupancy" or "temp. fac"
  • Axel Kohlmeyer (Wed May 13 2009 - 05:56:32 CDT)
  • Thomas Zauner (Wed May 13 2009 - 05:08:50 CDT)
• Sphere size
  • Axel Kohlmeyer (Sat Apr 23 2005 - 06:22:25 CDT)
  • John Stone (Fri Apr 22 2005 - 18:08:27 CDT)
  • Kurt Smith (Thu Apr 21 2005 - 15:04:39 CDT)
  • John Stone (Wed Apr 20 2005 - 17:30:30 CDT)
  • Kurt Smith (Wed Apr 20 2005 - 17:18:45 CDT)
• spikes in trajectory, problem with the alignment of frames
  • Luis Gracia (Thu Aug 24 2006 - 14:08:48 CDT)
  • Johannes Müllegger (Thu Aug 24 2006 - 13:50:20 CDT)
  • John Stone (Wed Aug 23 2006 - 22:27:52 CDT)
  • Johannes Müllegger (Wed Aug 23 2006 - 19:25:58 CDT)
• split
  • snoze pa (Mon May 22 2006 - 14:43:32 CDT)
• split multi frame pdb
  • Souvik Sinha (Mon Jul 30 2018 - 04:28:54 CDT)
  • abhik.ghosh_at_bose.res.in (Mon Jul 30 2018 - 04:14:26 CDT)
  • Souvik Sinha (Mon Jul 30 2018 - 02:36:23 CDT)
  • abhik.ghosh_at_bose.res.in (Mon Jul 30 2018 - 01:01:47 CDT)
  • amin sagar (Mon Jul 30 2018 - 00:57:09 CDT)
  • abhik.ghosh_at_bose.res.in (Mon Jul 30 2018 - 00:18:10 CDT)
• Splitting homotetramer subunits
  • Felipe Merino (Wed Jun 10 2015 - 02:50:54 CDT)
  • Francesco Pietra (Wed Jun 10 2015 - 02:24:57 CDT)
  • Felipe Merino (Tue Jun 09 2015 - 10:10:30 CDT)
  • Francesco Pietra (Tue Jun 09 2015 - 06:04:37 CDT)
• splitting pdb
  • Ashar Malik (Tue Oct 08 2019 - 23:20:52 CDT)
  • Stefano Guglielmo (Tue Oct 08 2019 - 10:30:02 CDT)
• splitting segments
  • Peter Freddolino (Tue Feb 06 2007 - 11:12:11 CST)
  • namd vmd (Tue Feb 06 2007 - 11:06:15 CST)
• Spring quality watches offer
  • Estela Gibbs (Tue Jun 10 2008 - 18:50:16 CDT)
  • Bertie Earl (Tue Apr 29 2008 - 19:30:10 CDT)
  • Bryce Vang (Mon Apr 28 2008 - 12:56:22 CDT)
  • Weldon Sylvester (Fri Apr 18 2008 - 18:29:29 CDT)
  • Grace Clay (Mon Apr 14 2008 - 11:47:27 CDT)
• Spring script not working
  • Josh Vermaas (Mon Feb 18 2013 - 09:11:48 CST)
  • Davide Mercadante (Mon Feb 18 2013 - 09:17:25 CST)
  • Axel Kohlmeyer (Mon Feb 18 2013 - 08:57:09 CST)
  • Davide Mercadante (Mon Feb 18 2013 - 07:26:13 CST)
• springs
  • John Stone (Thu Sep 05 2002 - 13:58:50 CDT)
  • Nguyen Hoang Phuong (Wed Sep 04 2002 - 07:20:00 CDT)
• sqlite and vmd
  • John Stone (Fri Oct 02 2015 - 10:01:04 CDT)
  • Nuno Sousa Cerqueira (Fri Oct 02 2015 - 08:39:08 CDT)
• sqm not active in molefacture
  • t.shivam_at_iitg.ernet.in (Thu Nov 02 2017 - 10:19:17 CDT)
  • Peter Freddolino (Thu Nov 02 2017 - 09:08:09 CDT)
  • t.shivam_at_iitg.ernet.in (Thu Nov 02 2017 - 05:26:30 CDT)
• SScache performance; fast secondary structure assignment
  • Ajasja LjubetiÄ� (Tue Feb 04 2014 - 14:58:37 CST)
  • John Stone (Tue Feb 04 2014 - 10:13:51 CST)
  • John Stone (Tue Feb 04 2014 - 09:00:55 CST)
  • Axel Kohlmeyer (Tue Feb 04 2014 - 07:44:58 CST)
  • Norman Geist (Tue Feb 04 2014 - 06:40:26 CST)
• sscache with bigdcd
  • Puspita Halder (Fri Jun 27 2014 - 00:35:33 CDT)
  • Maxim Belkin (Thu Jun 26 2014 - 09:43:23 CDT)
  • Puspita Halder (Thu Jun 26 2014 - 09:15:40 CDT)
  • Jeremiah Babcock (Wed Jun 25 2014 - 19:07:37 CDT)
  • Puspita Halder (Wed Jun 25 2014 - 08:23:56 CDT)
• SSD vs SSHD vs mechanical
  • James Kress (Thu Sep 24 2015 - 10:09:31 CDT)
  • Gianluca Interlandi (Wed Sep 23 2015 - 17:41:11 CDT)
  • John Stone (Wed Sep 23 2015 - 16:50:55 CDT)
  • Gianluca Interlandi (Wed Sep 23 2015 - 16:28:07 CDT)
  • John Stone (Wed Sep 23 2015 - 15:50:18 CDT)
  • John Stone (Wed Sep 23 2015 - 15:44:15 CDT)
  • Gianluca Interlandi (Wed Sep 23 2015 - 15:33:38 CDT)
  • Axel Kohlmeyer (Wed Sep 23 2015 - 14:52:43 CDT)
  • Gianluca Interlandi (Wed Sep 23 2015 - 14:24:18 CDT)
  • John Stone (Wed Sep 23 2015 - 14:11:51 CDT)
  • Gianluca Interlandi (Wed Sep 23 2015 - 13:57:22 CDT)
  • Gianluca Interlandi (Wed Sep 23 2015 - 13:22:06 CDT)
  • John Stone (Wed Sep 23 2015 - 13:37:27 CDT)
• SSE from the protein sequence
  • L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 10:51:11 CST)
  • Axel Kohlmeyer (Mon Jan 21 2008 - 09:53:10 CST)
  • Peter Freddolino (Mon Jan 21 2008 - 10:09:48 CST)
  • Lu Lin (Mon Jan 21 2008 - 09:11:49 CST)
• ssrecalc output for the whole trajectory
  • OZGE ENGIN (Sat Feb 09 2008 - 08:28:02 CST)
• SSrestraints
  • Vermaas, Joshua (Wed Oct 16 2019 - 14:10:10 CDT)
  • Paula Mihaljevic-Juric (Wed Oct 16 2019 - 12:19:19 CDT)
• Ssrestraints error
  • Kevin C Chan (Sun Aug 17 2014 - 23:16:09 CDT)
  • Tristan Croll (Sun Aug 17 2014 - 21:50:01 CDT)
  • Kevin C Chan (Thu Aug 14 2014 - 06:21:21 CDT)
• ssrestraints errors
  • Ryan McGreevy (Wed Aug 28 2019 - 13:18:08 CDT)
  • ridaka jannat (Wed Aug 28 2019 - 12:56:51 CDT)
  • Ryan McGreevy (Wed Aug 28 2019 - 12:50:35 CDT)
  • ridaka jannat (Wed Aug 28 2019 - 12:01:28 CDT)
• ssrestraints for determining the secondary structure of large protein complex
  • Yujie Wu (Wed Jan 16 2013 - 05:51:36 CST)
• SSRestraints missing some beta sheets
  • Charles Greenberg (Fri Feb 15 2013 - 18:57:14 CST)
• STAMP Multiseq
  • Anurag Sethi (Tue Aug 13 2013 - 13:46:42 CDT)
  • Kirby Vandivort (Tue Aug 13 2013 - 12:03:49 CDT)
  • Eli Alster (Tue Aug 13 2013 - 11:40:32 CDT)
• Stand-alone VMD ?
  • Salvatore Mario Cosseddu (Mon Feb 13 2012 - 08:03:43 CST)
  • R. Charbel Maroun (Mon Feb 13 2012 - 05:58:52 CST)
  • R. Charbel Maroun (Fri Feb 10 2012 - 09:25:21 CST)
  • Yamada, Masako (GE Global Research) (Fri Feb 10 2012 - 09:41:49 CST)
  • Salvatore Mario Cosseddu (Fri Feb 10 2012 - 08:49:55 CST)
  • Ajasja LjubetiÄ� (Fri Feb 10 2012 - 07:29:36 CST)
  • R. Charbel Maroun (Fri Feb 10 2012 - 05:26:38 CST)
• Start in VMD
  • Dallas Warren (Wed Oct 04 2017 - 16:40:29 CDT)
  • luiz beline (Wed Oct 04 2017 - 13:31:43 CDT)
• starting tkcon
  • mbcx7sa3_at_zedat.fu-berlin.de (Wed Mar 21 2012 - 17:34:10 CDT)
  • Olaf Lenz (Wed Mar 21 2012 - 11:56:20 CDT)
  • Axel Kohlmeyer (Wed Mar 21 2012 - 11:20:36 CDT)
  • John Stone (Wed Mar 21 2012 - 11:09:16 CDT)
  • mbcx7sa3_at_zedat.fu-berlin.de (Wed Mar 21 2012 - 10:17:30 CDT)
• Starting v1.8.4a20 vs. v1.8.2a22
  • Stephen P. Molar, Ph.D. (Sat Oct 22 2005 - 10:02:07 CDT)
  • Stephen P. Molar, Ph.D. (Thu Oct 20 2005 - 16:12:45 CDT)
  • John Stone (Thu Oct 20 2005 - 15:10:10 CDT)
  • Stephen P. Molar, Ph.D. (Thu Oct 20 2005 - 15:05:26 CDT)
  • John Stone (Thu Oct 20 2005 - 14:14:56 CDT)
  • Stephen P. Molar, Ph.D. (Thu Oct 20 2005 - 14:07:53 CDT)
• Starting VMD at Command Line in OSX
  • Christian Fufezan (Sat Oct 28 2006 - 13:38:10 CDT)
  • Jeffrey A Tibbitt (Sat Oct 21 2006 - 13:07:20 CDT)
• starting vmd in current working directory
  • John Stone (Wed May 22 2013 - 12:06:50 CDT)
  • Bennion, Brian (Wed May 22 2013 - 11:59:28 CDT)
• startup errors and variations of installation
  • Cheri M Turman (Thu Apr 01 2004 - 14:43:58 CST)
• startup failure
  • Cheri M Turman (Mon Apr 05 2004 - 12:47:54 CDT)
  • John Stone (Fri Apr 02 2004 - 19:19:28 CST)
  • Cheri M Turman (Fri Apr 02 2004 - 15:29:00 CST)
  • John Stone (Thu Apr 01 2004 - 17:33:35 CST)
  • Cheri M Turman (Thu Apr 01 2004 - 14:24:14 CST)
• Startup position of OpenGL Display window and VMD console window
  • æ�Žå®‰é‚¦ (Fri Dec 01 2023 - 00:41:40 CST)
  • Hasdemir, Hale Siir (Thu Nov 30 2023 - 10:15:14 CST)
  • æ�Žå®‰é‚¦ (Wed Nov 29 2023 - 20:44:29 CST)
• Startup problem on Windows
  • Stefan Boresch (Fri Nov 20 2020 - 02:17:52 CST)
  • John Stone (Wed Nov 18 2020 - 00:35:12 CST)
  • Stefan Boresch (Tue Nov 17 2020 - 14:57:25 CST)
  • John Stone (Tue Nov 17 2020 - 11:00:06 CST)
  • Chang, Christopher (Tue Nov 17 2020 - 10:18:07 CST)
  • Stefan Boresch (Tue Nov 17 2020 - 03:39:20 CST)
• static text
  • John Stone (Thu Sep 11 2003 - 13:06:06 CDT)
• Stationary labels; delays ("wait") in scripts
  • John Stone (Mon Feb 23 2004 - 13:18:57 CST)
  • Hoch,Jeffrey (Thu Feb 19 2004 - 06:40:59 CST)
• statistics in VMD
  • John Stone (Thu May 28 2009 - 19:25:09 CDT)
  • Thomas C. Bishop (Thu May 28 2009 - 19:18:17 CDT)
• status of psfgen support for CHARMM psf format
  • John Stone (Tue Oct 30 2007 - 22:57:31 CDT)
  • Dow Hurst DPHURST (Mon Oct 22 2007 - 09:37:30 CDT)
• Status of VR in VMD
  • Paulo E. Abreu (Tue Sep 07 2021 - 04:04:30 CDT)
  • John Stone (Thu Jun 10 2021 - 16:10:23 CDT)
  • Paulo E. Abreu (Tue Jun 01 2021 - 13:46:01 CDT)
• Steered Molecular Dynamics for Metal-organic frameworks
  • Achar, Sid (Mon Mar 09 2020 - 11:15:14 CDT)
• Steinhardt order parameter and clustering algorithms
  • conor parks (Sun Dec 13 2015 - 15:11:11 CST)
  • conor parks (Sat Dec 12 2015 - 17:01:42 CST)
  • MannyEful E (Sat Dec 12 2015 - 13:04:18 CST)
• Step 6 ffTK ligand calculation.
  • Mayne, Christopher G (Mon May 06 2013 - 07:57:36 CDT)
  • aravind chandrasekaran (Mon May 06 2013 - 00:31:09 CDT)
  • Mayne, Christopher G (Sat May 04 2013 - 08:16:36 CDT)
  • Mayne, Christopher G (Fri May 03 2013 - 09:04:09 CDT)
  • Mayne, Christopher G (Thu May 02 2013 - 13:51:37 CDT)
  • aravind chandrasekaran (Thu May 02 2013 - 10:26:06 CDT)
• stereo
  • Alan Wilter Sousa da Silva (Wed May 28 2003 - 13:02:00 CDT)
  • Oscar Moran (Wed May 28 2003 - 12:24:47 CDT)
• Stereo 3D by the Numbers
  • John Stone (Thu Feb 17 2005 - 16:47:20 CST)
  • Warren DeLano (Thu Feb 10 2005 - 16:50:44 CST)
• Stereo 3D matters to me
  • John Stone (Fri Jan 14 2005 - 10:02:50 CST)
• stereo anaglyph
  • Roman Petrenko (Thu Jul 23 2009 - 16:16:07 CDT)
• stereo anaglyph rendering
  • John Stone (Sun Jul 10 2011 - 22:17:20 CDT)
  • thiru pathi (Sun Jul 10 2011 - 07:18:29 CDT)
  • Axel Kohlmeyer (Sun Jul 10 2011 - 05:36:00 CDT)
  • thiru pathi (Sun Jul 10 2011 - 01:47:59 CDT)
• stereo display on NVIDIA Quadro4 750 XGL
  • John Stone (Wed Mar 12 2003 - 15:01:15 CST)
  • John Stone (Mon Jan 13 2003 - 17:14:06 CST)
  • Magnus Kreth (Mon Jan 13 2003 - 09:32:28 CST)
  • John Stone (Tue Jan 07 2003 - 09:42:35 CST)
  • Karsten Suhre (Tue Jan 07 2003 - 05:32:22 CST)
• stereo enabler
  • John Stone (Wed Aug 16 2006 - 16:21:44 CDT)
  • Dan White (Fri Mar 31 2006 - 03:08:21 CST)
• stereo for XP and Linux
  • Benjamin Goldsteen (Wed Jan 12 2005 - 18:04:44 CST)
  • John Stone (Wed Jan 12 2005 - 11:30:18 CST)
  • Michal Kolinski (Wed Jan 12 2005 - 11:22:57 CST)
• stereo glasses and VMD
  • John Stone (Thu Jun 12 2003 - 15:26:17 CDT)
  • Sanjeev B.S. (Thu Jun 12 2003 - 12:47:56 CDT)
• stereo images for publication
  • Vlad Cojocaru (Fri Apr 20 2012 - 10:04:39 CDT)
  • Vlad Cojocaru (Fri Apr 20 2012 - 09:59:21 CDT)
• Stereo in linux/oxygen gvx1/xig driver
  • John Stone (Thu Jan 24 2002 - 12:53:41 CST)
  • Boaz Shaanan (Thu Jan 24 2002 - 03:30:25 CST)
  • John Stone (Wed Jan 23 2002 - 19:49:00 CST)
  • Boaz Shaanan (Sat Jan 19 2002 - 06:35:50 CST)
• Stereo mode on NVidia/Win2000
  • John Stone (Mon Jan 27 2003 - 22:54:53 CST)
  • John Stone (Fri Jan 24 2003 - 17:58:35 CST)
  • Michael Redmond (Fri Jan 24 2003 - 14:43:16 CST)
  • John Stone (Fri Jan 24 2003 - 14:18:32 CST)
  • John Stone (Fri Jan 24 2003 - 14:01:55 CST)
  • Michael Redmond (Fri Jan 24 2003 - 13:54:26 CST)
  • DeLano, Warren (Fri Jan 24 2003 - 13:44:14 CST)
  • John Stone (Fri Jan 24 2003 - 10:20:10 CST)
  • Michael Redmond (Fri Jan 24 2003 - 09:29:55 CST)
• stereo mode problems with vmd on IRIX 6.2
  • matt_at_clarkeconsulting.com (Thu Nov 20 1997 - 18:14:21 CST)
• stereo mode problems with vmd on IRIX6.2
  • Thomas Ehmer (Mon Dec 29 1997 - 07:34:06 CST)
• Stereo Mode User Defined
  • Christian Wohlschlager (Wed Nov 05 2014 - 02:06:10 CST)
• Stereo on an SGI Octane2 using Crystal Eyes
  • John Stone (Tue Dec 28 2004 - 11:23:35 CST)
  • Jill Vickery (Mon Dec 27 2004 - 12:50:09 CST)
• stereo on LCD display = pipe dream?
  • Warren DeLano (Wed Aug 16 2006 - 15:11:39 CDT)
  • John Stone (Wed Aug 16 2006 - 14:02:24 CDT)
  • Jeff Hoch (Wed Aug 16 2006 - 13:46:04 CDT)
• stereo on linux: DTI monitors?
  • Alexander Farley (Sun Sep 08 2002 - 09:36:48 CDT)
  • Mads Nørregaard-Madsen (Tue Aug 27 2002 - 03:38:14 CDT)
  • John Stone (Mon Aug 26 2002 - 11:10:48 CDT)
  • Johannes von Langen (Mon Aug 26 2002 - 02:57:32 CDT)
  • Peter Tieleman (Sat Aug 24 2002 - 00:12:23 CDT)
• Stereo on Linux: Eyes3D Premium + Nvidia
  • John Stone (Thu Aug 29 2002 - 09:40:40 CDT)
  • John Stone (Wed Aug 28 2002 - 14:58:20 CDT)
  • Pawel Kedzierski (Tue Aug 27 2002 - 23:49:49 CDT)
• Stereo on Linux?
  • John Stone (Fri Mar 17 2000 - 16:18:09 CST)
• Stereo on Mac OX 10.3.3
  • John Stone (Thu May 06 2004 - 21:53:39 CDT)
  • Jill Vickery (Thu May 06 2004 - 16:50:27 CDT)
• stereo on MacG5
  • John Stone (Wed Mar 29 2006 - 12:48:05 CST)
  • Dan White (Wed Mar 29 2006 - 12:36:16 CST)
• Stereo on MacG5 (single processor) for VMD, Chimera UCSF etc.
  • Kim, Kwiseon (Wed Mar 29 2006 - 15:47:24 CST)
  • Warren DeLano (Wed Mar 29 2006 - 14:52:16 CST)
  • John Stone (Wed Mar 29 2006 - 14:23:25 CST)
  • Marc Baaden (Wed Mar 29 2006 - 14:15:19 CST)
  • Warren DeLano (Wed Mar 29 2006 - 11:54:16 CST)
  • John Stone (Wed Mar 29 2006 - 10:19:06 CST)
  • Peter Engelhardt (Tue Mar 28 2006 - 23:53:56 CST)
• stereo on MacG5 with Nvidia GeForce FX 5200
  • Robert Brunner (Wed Mar 29 2006 - 16:44:12 CST)
  • John Stone (Wed Mar 29 2006 - 14:20:57 CST)
  • Dan White (Wed Mar 29 2006 - 14:15:45 CST)
• Stereo on non supported G5
  • Dan White (Fri Mar 31 2006 - 02:12:42 CST)
• Stereo on SGI Indigo2? - Linux?
  • John Stone (Wed Jan 19 2000 - 11:09:23 CST)
  • Eugene Leitl (Sat Jan 15 2000 - 19:35:26 CST)
  • Timm Essigke (Sat Jan 15 2000 - 10:11:49 CST)
• Stereo on SGI Octane 250HMz R10000, IRIX 6.5
  • John Stone (Wed Feb 17 1999 - 00:43:56 CST)
  • Kim Vilbour Andersen (Mon Feb 15 1999 - 05:21:17 CST)
  • John Stone (Fri Feb 12 1999 - 09:30:37 CST)
  • Kim Vilbour Andersen (Fri Feb 12 1999 - 09:20:16 CST)
• stereo postscript rendering
  • Charles_at_Schwieters.org (Tue Jun 20 2000 - 08:04:27 CDT)
• stereo problem and VMD 1.8.2beta5
  • John Stone (Tue Nov 11 2003 - 15:36:04 CST)
  • Marc Baaden (Tue Nov 11 2003 - 14:13:49 CST)
• stereo problem with vmd
  • John Stone (Fri Jun 25 2010 - 12:56:34 CDT)
  • Osmany Guirola Cruz (Fri Jun 25 2010 - 12:51:26 CDT)
  • John Stone (Fri Jun 25 2010 - 10:14:20 CDT)
  • Osmany Guirola Cruz (Fri Jun 25 2010 - 06:58:06 CDT)
• Stereo projection ?
  • John Stone (Mon Mar 29 2004 - 19:44:51 CST)
  • Marc Baaden (Mon Mar 29 2004 - 15:56:37 CST)
• stereo projection, Mac
  • John Stone (Mon Nov 03 2003 - 17:00:12 CST)
  • Jeff Hoch (Mon Nov 03 2003 - 15:19:56 CST)
• Stereo quality and Save State Problems
  • John Stone (Fri Nov 08 2002 - 14:36:04 CST)
  • Jill Vickery (Fri Nov 08 2002 - 14:07:46 CST)
• stereo view
  • John Stone (Fri Feb 16 2007 - 17:53:08 CST)
  • Osmany Guirola Cruz (Fri Feb 16 2007 - 14:06:43 CST)
• Stereo VMD
  • John Stone (Thu Dec 26 2002 - 15:40:43 CST)
  • jwc_at_itsa.ucsf.edu (Thu Dec 26 2002 - 11:32:16 CST)
  • MengJuei Hsieh (Thu Dec 26 2002 - 03:26:35 CST)
  • jwc_at_itsa.ucsf.edu (Tue Dec 24 2002 - 18:24:51 CST)
• Stereo VMD on Mac G5
  • John Stone (Mon May 22 2006 - 16:13:42 CDT)
  • Kim, Kwiseon (Mon May 22 2006 - 12:05:23 CDT)
• stereo with GForce video board
  • John Stone (Thu Jul 29 2004 - 10:58:05 CDT)
  • Anna Modzelewska (Thu Jul 29 2004 - 04:20:31 CDT)
• stereo with vmd
  • John Stone (Wed Feb 01 2006 - 17:06:00 CST)
  • Osmany Guirola Cruz (Wed Feb 01 2006 - 16:53:32 CST)
• Stereo-3D in a Window: Not in MacOS X Tiger?!!
  • Warren DeLano (Thu Jan 13 2005 - 19:58:50 CST)
• Stereoglasses Linux]
  • John Stone (Fri Jul 19 2002 - 13:37:11 CDT)
• Stereoscopic rendering on Linux
  • John Stone (Wed Feb 21 2001 - 11:00:57 CST)
  • Timm Essigke (Wed Feb 21 2001 - 10:41:56 CST)
• Stereoscopic visualization
  • Emiliano Ippoliti (Tue May 11 2010 - 02:37:15 CDT)
  • John Stone (Mon May 10 2010 - 11:47:46 CDT)
  • Axel Kohlmeyer (Sun May 09 2010 - 14:12:14 CDT)
  • Emiliano Ippoliti (Sun May 09 2010 - 13:56:59 CDT)
  • Axel Kohlmeyer (Sun May 09 2010 - 11:58:13 CDT)
  • Emiliano Ippoliti (Sun May 09 2010 - 10:58:46 CDT)
• stl
  • John Stone (Wed Apr 17 2002 - 08:52:40 CDT)
  • Patricia Soto (Wed Apr 17 2002 - 05:08:20 CDT)
• STL files
  • Dieter Krachtus (Fri Aug 08 2003 - 09:04:45 CDT)
  • John Stone (Thu Jul 17 2003 - 11:21:22 CDT)
  • alarcon_at_lncc.br (Thu Jul 17 2003 - 11:07:02 CDT)
• STL format file - rendering
  • John Stone (Thu Dec 19 2002 - 15:34:41 CST)
  • alarcon_at_lncc.br (Thu Dec 19 2002 - 13:39:20 CST)
• STL rendering
  • John Stone (Thu Apr 06 2006 - 09:45:01 CDT)
  • Jean Richelle (Thu Apr 06 2006 - 09:39:53 CDT)
• Stop using directory from previous session
  • John Stone (Wed Nov 11 2009 - 12:38:08 CST)
  • J. Rui Rodrigues (Wed Nov 11 2009 - 11:57:37 CST)
  • J. Rui Rodrigues (Wed Nov 11 2009 - 11:51:38 CST)
  • John Stone (Wed Nov 11 2009 - 11:13:36 CST)
  • J. Rui Rodrigues (Wed Nov 11 2009 - 10:54:01 CST)
• Storing multiple values in the user field
  • John Stone (Fri Sep 28 2007 - 17:12:51 CDT)
  • Axel Kohlmeyer (Fri Sep 28 2007 - 16:17:09 CDT)
  • John Stone (Fri Sep 28 2007 - 16:25:34 CDT)
  • Bob Johnson (Fri Sep 28 2007 - 16:15:05 CDT)
• strange behavior of render command
  • Josh Vermaas (Thu Aug 28 2014 - 11:48:42 CDT)
  • John Stone (Thu Aug 28 2014 - 11:30:37 CDT)
  • Philippe Bopp (Thu Aug 28 2014 - 10:57:33 CDT)
• Strange behaviour of MSMS
  • John Stone (Tue Oct 16 2007 - 09:20:37 CDT)
  • Ezequiel Quintana Morales (Tue Oct 16 2007 - 07:33:07 CDT)
• strange bond
  • Paul Grayson (Wed Apr 03 2002 - 14:05:41 CST)
  • John Stone (Wed Apr 03 2002 - 14:01:36 CST)
  • Nguyen Hoang Phuong (Wed Apr 03 2002 - 12:49:57 CST)
  • Paul Grayson (Wed Apr 03 2002 - 12:37:30 CST)
  • Nguyen Hoang Phuong (Wed Apr 03 2002 - 11:03:00 CST)
  • Justin Gullingsrud (Wed Apr 03 2002 - 10:46:09 CST)
  • John Stone (Wed Apr 03 2002 - 10:45:40 CST)
  • Nguyen Hoang Phuong (Wed Apr 03 2002 - 10:20:54 CST)
  • John Stone (Wed Apr 03 2002 - 09:48:14 CST)
  • Nguyen Hoang Phuong (Wed Apr 03 2002 - 05:24:16 CST)
• Strange Bond Behavior Question
  • McGuire, Kelly (Fri Jun 22 2018 - 15:42:20 CDT)
• Strange characters using writemol2 (vmd 1.8.5)
  • Cesar Luis Avila (Mon Apr 16 2007 - 20:06:58 CDT)
  • John Stone (Mon Apr 16 2007 - 18:39:17 CDT)
  • Cesar Luis Avila (Mon Apr 16 2007 - 18:32:28 CDT)
• strange coloring
  • Wei Chen (Mon May 07 2012 - 16:44:19 CDT)
  • John Stone (Mon May 07 2012 - 16:19:34 CDT)
  • Axel Kohlmeyer (Mon May 07 2012 - 16:05:49 CDT)
  • Wei Chen (Mon May 07 2012 - 15:54:51 CDT)
  • John Stone (Mon May 07 2012 - 15:39:26 CDT)
  • Wei Chen (Mon May 07 2012 - 15:17:21 CDT)
• Strange GLSL rendering
  • Axel Kohlmeyer (Tue Mar 14 2006 - 09:12:33 CST)
  • John Stone (Tue Mar 14 2006 - 10:20:11 CST)
  • Mario Valle (Tue Mar 14 2006 - 06:07:53 CST)
• Strange MOL2 export
  • Peter Freddolino (Mon Feb 19 2007 - 09:55:24 CST)
  • Mario Valle (Mon Feb 19 2007 - 09:12:33 CST)
  • Peter Freddolino (Sat Feb 17 2007 - 15:36:45 CST)
  • Mario Valle (Sat Feb 17 2007 - 12:21:42 CST)
• strange output from measure cluster
  • Axel Kohlmeyer (Thu Jul 21 2016 - 18:11:24 CDT)
  • Bennion, Brian (Thu Jul 21 2016 - 17:31:46 CDT)
• strange problems adding extra bonds to interactive simulations
  • Tristan Croll (Thu Jan 16 2014 - 14:57:31 CST)
  • Ryan McGreevy (Thu Jan 16 2014 - 13:22:47 CST)
  • Ryan McGreevy (Fri Jan 10 2014 - 10:06:47 CST)
  • John Stone (Fri Jan 10 2014 - 09:33:58 CST)
  • Tristan Croll (Thu Jan 09 2014 - 22:25:24 CST)
  • Axel Kohlmeyer (Thu Jan 09 2014 - 21:50:21 CST)
  • Tristan Croll (Thu Jan 09 2014 - 20:03:39 CST)
• Strange results when visualizing .trr trajectory
  • Anurag Sethi (Sat Jun 02 2012 - 12:36:14 CDT)
  • Axel Kohlmeyer (Sat Jun 02 2012 - 12:38:42 CDT)
  • patrick wintrode (Sat Jun 02 2012 - 11:41:04 CDT)
• strange vdw representation behavior
  • John Stone (Wed Mar 29 2006 - 14:18:50 CST)
  • Mgr. Lubos Vrbka (Wed Mar 29 2006 - 14:08:57 CST)
• Strange VMD output
  • John Stone (Tue Jun 21 2005 - 16:01:12 CDT)
  • Chang, Christopher (Fri Jun 17 2005 - 15:02:57 CDT)
• Stray PME grid
  • Mayne, Christopher G (Tue Sep 30 2014 - 12:26:28 CDT)
  • Vy Phan (Tue Sep 30 2014 - 09:39:12 CDT)
• stream files and paratool
  • Francesco Pietra (Fri Sep 23 2011 - 03:10:52 CDT)
• Stride
  • Karsten SUHRE (Tue Dec 19 2006 - 02:05:13 CST)
  • John Stone (Tue Dec 19 2006 - 01:00:24 CST)
  • Neelanjana Sengupta (Mon Dec 18 2006 - 23:14:22 CST)
• STRIDE analysis of beta-sheets in VMD
  • Axel Kohlmeyer (Fri Oct 10 2008 - 16:50:59 CDT)
  • Tristan Bereau (Fri Oct 10 2008 - 15:28:33 CDT)
• stride binaries for windows XP OS
  • John Stone (Tue Nov 13 2007 - 10:18:59 CST)
  • Axel Kohlmeyer (Tue Nov 13 2007 - 02:27:33 CST)
  • aneesh cna (Mon Nov 12 2007 - 23:21:34 CST)
• STRIDE breaks after 100,000 protein atoms
  • Diego Gomes (Thu Nov 02 2023 - 13:57:33 CDT)
  • Diego Gomes (Thu Nov 02 2023 - 12:58:25 CDT)
  • Vasista (Wed Nov 01 2023 - 06:36:38 CDT)
• STRIDE doesnt recognize unusual protein residue
  • Vlad Cojocaru (Fri Nov 18 2005 - 10:51:09 CST)
  • John Stone (Fri Nov 18 2005 - 09:59:16 CST)
  • Vlad Cojocaru (Fri Nov 18 2005 - 04:57:08 CST)
  • John Stone (Wed Nov 16 2005 - 15:39:11 CST)
  • Vlad Cojocaru (Wed Nov 16 2005 - 05:14:47 CST)
• STRIDE error
  • dimka (Fri Nov 18 2005 - 14:50:04 CST)
  • John Stone (Fri Nov 18 2005 - 13:52:17 CST)
  • dimka (Fri Nov 18 2005 - 13:41:02 CST)
  • John Stone (Wed Dec 10 2003 - 00:42:08 CST)
  • Tyler Luchko (Mon Dec 08 2003 - 12:36:03 CST)
• STRIDE error: too many atoms in res
  • John Stone (Fri Mar 05 2010 - 14:46:07 CST)
  • Nadine Utz (Fri Mar 05 2010 - 10:29:34 CST)
• stride failed
  • John Stone (Fri Feb 09 2007 - 02:24:12 CST)
  • Tsu-Fan Cheng (Wed Feb 07 2007 - 15:23:08 CST)
• STRIDE for a trajectory in text mode
  • Jerome Henin (Sun Oct 01 2006 - 23:53:13 CDT)
  • tnels_at_sfu.ca (Fri Sep 29 2006 - 15:29:02 CDT)
• Stride for large structures
  • Tristan Croll (Wed Nov 25 2015 - 16:49:34 CST)
  • John Stone (Wed Nov 25 2015 - 09:25:11 CST)
  • Tristan Croll (Wed Nov 25 2015 - 02:04:50 CST)
• STRIDE issues on Windows
  • mfeiglab_at_gmail.com (Wed Apr 29 2020 - 10:45:52 CDT)
  • Mortimer Hemmit (Wed Apr 29 2020 - 10:34:19 CDT)
  • mfeiglab_at_gmail.com (Wed Apr 29 2020 - 10:08:18 CDT)
  • Mortimer Hemmit (Wed Apr 29 2020 - 10:15:45 CDT)
  • Mortimer Hemmit (Wed Apr 29 2020 - 09:42:43 CDT)
  • mfeiglab_at_gmail.com (Wed Apr 29 2020 - 08:58:38 CDT)
  • John Stone (Wed Apr 29 2020 - 01:20:47 CDT)
  • John Stone (Wed Apr 29 2020 - 01:16:19 CDT)
  • mfeiglab_at_gmail.com (Mon Apr 27 2020 - 12:51:01 CDT)
• stride not showing all helix section after VMD crash
  • John Stone (Thu Apr 15 2021 - 11:51:36 CDT)
  • Carlos Simmerling (Tue Apr 13 2021 - 16:28:22 CDT)
• Stride problems in XP....
  • John Stone (Tue Dec 02 2003 - 13:41:03 CST)
  • Jorge Hernanez Fernandez (Tue Dec 02 2003 - 11:52:19 CST)
• Stride update in every frame of a trajectory?
  • peter.schmidtke_at_fr.netgrs.com (Mon Jan 07 2013 - 03:03:13 CST)
  • Martin, Erik W (Sat Jan 05 2013 - 10:57:17 CST)
• stripping off oxygen groups
  • John Stone (Thu Feb 12 2004 - 16:49:01 CST)
  • Ross J. Toedte (Thu Feb 12 2004 - 14:31:39 CST)
• Stripping out H20
  • Axel Kohlmeyer (Sun Jul 26 2009 - 20:09:45 CDT)
  • Axel Kohlmeyer (Sun Jul 26 2009 - 18:47:33 CDT)
  • Jehanzeb Hameed (Sun Jul 26 2009 - 18:24:33 CDT)
• Stripping water from psf
  • Raman Preet Singh (Fri Aug 13 2021 - 08:41:18 CDT)
  • Vermaas, Josh (Thu Aug 12 2021 - 14:55:03 CDT)
  • Raman Preet Singh (Thu Aug 12 2021 - 12:44:46 CDT)
• structural alignment
  • John Stone (Fri Oct 28 2005 - 10:43:27 CDT)
  • Shachi Gosavi (Thu Oct 27 2005 - 17:01:42 CDT)
• Structural Biology Software Database updated...
  • John Stone (Tue Aug 06 2002 - 10:24:14 CDT)
• Structural Change of DNA
  • satya kumar (Mon Nov 19 2012 - 17:50:42 CST)
• Structure factor and Steinhardt order parameter
  • Arpita Srivastava (Wed Sep 22 2021 - 11:54:54 CDT)
• structure file for big molecules
  • Nicholas Musolino (Sun Jun 20 2010 - 20:23:50 CDT)
  • Axel Kohlmeyer (Sun Jun 20 2010 - 18:55:39 CDT)
  • Moeed (Fri Jun 18 2010 - 21:19:02 CDT)
• Structure preparation via VMD
  • Gianluca Interlandi (Sat Oct 29 2011 - 10:55:28 CDT)
  • James Starlight (Sat Oct 29 2011 - 07:29:33 CDT)
• Structure summary in output file
  • John Stone (Fri Nov 08 2013 - 17:51:02 CST)
  • Anurag Sharma (Wed Nov 06 2013 - 12:11:55 CST)
• structure superimposition
  • Shirley Li (Sat Oct 30 2004 - 23:18:33 CDT)
• Structure won't move after loading trajectory
  • hirdesh kumar (Tue Aug 24 2010 - 23:38:00 CDT)
  • NG HUI WEN (Tue Aug 24 2010 - 00:08:49 CDT)
  • Tim Travers (Mon Aug 23 2010 - 23:26:00 CDT)
  • Axel Kohlmeyer (Mon Aug 23 2010 - 20:39:30 CDT)
  • NG HUI WEN (Mon Aug 23 2010 - 19:40:36 CDT)
• Study the hydrogen bond in VMD
  • Bennion, Brian (Tue Sep 05 2017 - 10:31:57 CDT)
  • Roshan Shrestha (Sat Sep 02 2017 - 06:19:11 CDT)
• Stuttering in video with TachyonL-Optix
  • John Stone (Wed Oct 11 2017 - 10:00:13 CDT)
  • Dallas Warren (Tue Oct 10 2017 - 17:57:25 CDT)
  • John Stone (Tue Oct 10 2017 - 16:09:24 CDT)
  • Dallas Warren (Tue Oct 10 2017 - 15:54:40 CDT)
  • John Stone (Mon Oct 09 2017 - 22:17:24 CDT)
  • Dallas Warren (Mon Oct 09 2017 - 20:53:18 CDT)
  • Dallas Warren (Mon Oct 09 2017 - 20:43:57 CDT)
• stuttering movies with snapshot
  • John Stone (Thu Jan 23 2020 - 10:50:08 CST)
  • Sebastian Reiter (Thu Jan 23 2020 - 10:03:06 CST)
  • Robin Betz (Wed Jan 22 2020 - 13:51:57 CST)
  • John Stone (Wed Jan 22 2020 - 12:35:50 CST)
  • Sebastian Reiter (Wed Jan 22 2020 - 12:03:31 CST)
• Stylish repl1ca w4tches from famous brands
  • Susan Langston (Tue Sep 04 2007 - 03:16:35 CDT)
• sub : considering waters with in 5A of solute
  • Axel Kohlmeyer (Wed Jul 24 2019 - 12:24:05 CDT)
  • Lara rajam (Wed Jul 24 2019 - 11:16:03 CDT)
  • Ashar Malik (Tue Jul 23 2019 - 15:30:18 CDT)
  • Lara rajam (Tue Jul 23 2019 - 10:10:42 CDT)
• Sub: making a trajectory with frames having different number of water molecules.
  • John Stone (Mon Jul 08 2019 - 00:33:04 CDT)
  • Lara rajam (Mon Jul 01 2019 - 19:44:18 CDT)
• submit VMD_SS script
  • sajad falsafi (Fri Jun 03 2011 - 11:35:20 CDT)
  • sajad falsafi (Fri Jun 03 2011 - 00:59:22 CDT)
• subopt/network analysis
  • Tamas Hegedus (Tue Sep 17 2019 - 04:31:40 CDT)
• subscribe and questions
  • John Stone (Fri Nov 14 2003 - 14:45:33 CST)
  • Albert Sun (Fri Nov 14 2003 - 13:06:34 CST)
• substitute one residue without rebuilding the structure?
  • Radak, Brian K (Fri May 05 2017 - 13:26:23 CDT)
  • Olya Kravchenko (Fri May 05 2017 - 13:27:39 CDT)
  • Olya Kravchenko (Fri May 05 2017 - 13:12:41 CDT)
  • Radak, Brian K (Fri May 05 2017 - 08:54:51 CDT)
  • Olya Kravchenko (Thu May 04 2017 - 22:00:20 CDT)
  • Vermaas, Joshua (Thu May 04 2017 - 18:26:11 CDT)
  • Olya Kravchenko (Thu May 04 2017 - 16:58:38 CDT)
• substrate moving out of the box
  • Subbarao Kanchi (Mon Jun 09 2014 - 07:28:40 CDT)
  • Revthi Sanker (Mon Jun 09 2014 - 06:31:11 CDT)
• subtlety with PSFGEN - angle/dihedral regeneration
  • Erik Nordgren (Wed Nov 24 2010 - 20:55:06 CST)
• Subtract structure to a trajectory
  • Josh Vermaas (Thu Jul 10 2014 - 10:54:09 CDT)
  • Axel Kohlmeyer (Thu Jul 10 2014 - 10:51:23 CDT)
  • Josh Vermaas (Thu Jul 10 2014 - 10:01:15 CDT)
  • Marco Gerolin (Thu Jul 10 2014 - 09:06:29 CDT)
• Successful VMD win64 Compile
  • Nima Nouri (Thu Oct 09 2014 - 16:48:15 CDT)
• sugar cluster analysis
  • Axel Kohlmeyer (Sat Nov 02 2013 - 01:27:01 CDT)
  • Subrata Paul (Sat Nov 02 2013 - 00:14:14 CDT)
• suggested citation versus pubmed entry
  • John Stone (Mon Jul 05 2004 - 13:58:31 CDT)
  • Craig Shepherd (Wed Jun 30 2004 - 19:00:19 CDT)
• suggested citation vs. pubmed entry
  • Craig Shepherd (Thu Jul 01 2004 - 13:18:58 CDT)
• Suggested fix for 'restore_reps' command
  • Robert Elder (Fri Jun 02 2017 - 14:12:43 CDT)
• Suggested graphic card :: LINUX
  • Tru Huynh (Tue Mar 04 2003 - 05:47:59 CST)
  • Dr. Daniel James White PhD (Tue Mar 04 2003 - 02:31:52 CST)
  • John Stone (Mon Mar 03 2003 - 10:51:31 CST)
  • Joseph Edward Curtis (Mon Mar 03 2003 - 10:07:19 CST)
• suggested graphic card for Mac Pro
  • John Stone (Thu Oct 02 2008 - 12:22:39 CDT)
  • Joaquim Rui Rodrigues (Thu Oct 02 2008 - 12:09:32 CDT)
• suggested video card for linux
  • Burcin Temel (Mon Aug 11 2008 - 12:13:06 CDT)
  • John Stone (Mon Aug 04 2008 - 11:24:47 CDT)
  • Burcin Temel (Mon Aug 04 2008 - 07:32:03 CDT)
• Suggestion for measure cluster
  • Jérôme Hénin (Fri May 11 2012 - 04:32:39 CDT)
  • Jérôme Hénin (Fri May 11 2012 - 04:35:07 CDT)
• Suggestions on parameterizing a ligand to simulate in NAMD
  • Peterson J (Thu Jun 13 2013 - 17:08:29 CDT)
  • Mayne, Christopher G (Thu Jun 13 2013 - 15:55:52 CDT)
  • Peterson J (Thu Jun 13 2013 - 11:59:28 CDT)
  • Peterson J (Tue May 21 2013 - 16:38:07 CDT)
  • Mayne, Christopher G (Tue May 21 2013 - 16:55:01 CDT)
  • Mayne, Christopher G (Tue May 21 2013 - 15:46:07 CDT)
  • Peterson J (Tue May 21 2013 - 14:24:51 CDT)
  • Mayne, Christopher G (Tue May 21 2013 - 13:05:04 CDT)
  • Peterson J (Tue May 21 2013 - 11:35:01 CDT)
  • Mayne, Christopher G (Tue May 21 2013 - 07:59:25 CDT)
  • Peterson J (Mon May 20 2013 - 23:48:48 CDT)
  • Mayne, Christopher G (Mon May 20 2013 - 14:32:42 CDT)
  • Jiawei Xu (Mon May 20 2013 - 14:11:50 CDT)
  • Bennion, Brian (Mon May 20 2013 - 14:15:26 CDT)
  • Peterson J (Mon May 20 2013 - 13:03:57 CDT)
• Suggestions on sending VMD bug reports/questions, etc...
  • John Stone (Mon Mar 15 2004 - 14:09:51 CST)
• Suitable VMD version for OS X EI Capitan, Version 10.11.3
  • Mahdieh Hadi (Wed Feb 24 2016 - 02:33:17 CST)
  • John Stone (Tue Feb 23 2016 - 10:11:08 CST)
  • Mahdieh Hadi (Tue Feb 23 2016 - 03:35:01 CST)
  • Mahdieh Hadi (Mon Feb 22 2016 - 17:04:44 CST)
• Summing volumetric data within a sub-volume of a simulation cell
  • John Stone (Thu Apr 06 2006 - 00:05:04 CDT)
  • Joshua Speidel (Thu Mar 02 2006 - 17:41:23 CST)
• sun server with graphics card
  • John Stone (Thu Jul 28 2005 - 10:05:16 CDT)
  • sankari thirumal (Wed Jul 27 2005 - 23:24:29 CDT)
• Superimpose
  • John Stone (Thu Dec 08 2016 - 21:24:45 CST)
  • Wong Li Zhe (Thu Dec 08 2016 - 18:37:12 CST)
  • Ashar Malik (Tue Dec 06 2016 - 22:56:55 CST)
  • John Stone (Tue Dec 06 2016 - 22:37:04 CST)
  • Wong Li Zhe (Tue Dec 06 2016 - 18:03:04 CST)
  • Ashar Malik (Thu Dec 01 2016 - 02:42:56 CST)
  • Wong Li Zhe (Wed Nov 30 2016 - 23:53:25 CST)
• Superimpose Models
  • Ashar Malik (Thu Nov 24 2016 - 22:41:36 CST)
  • Wong Li Zhe (Thu Nov 24 2016 - 20:42:29 CST)
  • John Stone (Thu Nov 24 2016 - 12:16:21 CST)
  • Vermaas, Joshua (Thu Nov 24 2016 - 11:27:49 CST)
  • Wong Li Zhe (Thu Nov 24 2016 - 00:40:01 CST)
  • Wong Li Zhe (Wed Nov 23 2016 - 23:37:45 CST)
• Superimpose protein - plot water position - visualize water pathway
  • Axel Kohlmeyer (Sat Aug 07 2010 - 20:42:05 CDT)
  • Marc Zimmer (Sat Aug 07 2010 - 19:51:26 CDT)
• Superimpose Protein Structure
  • Wong Li Zhe (Tue Jan 30 2018 - 03:20:14 CST)
• superimpose residues across several protein structures
  • Joyce Tan (Wed Sep 22 2010 - 10:20:00 CDT)
  • Ajasja LjubetiÄ� (Wed Sep 22 2010 - 08:57:04 CDT)
  • Eduard Schreiner (Wed Sep 22 2010 - 08:52:20 CDT)
  • Joyce Tan (Wed Sep 22 2010 - 08:02:18 CDT)
• superimpose RNA backbones
  • John Stone (Tue Apr 05 2005 - 19:00:45 CDT)
  • Luis Gracia (Fri Apr 01 2005 - 14:11:32 CST)
  • gtg991m_at_mail.gatech.edu (Fri Apr 01 2005 - 11:17:21 CST)
• Superimpose Structures
  • Ashar Malik (Wed Jan 24 2018 - 01:42:55 CST)
  • Wong Li Zhe (Tue Jan 23 2018 - 20:49:59 CST)
• superimpose two proteins
  • John Stone (Mon Mar 16 2009 - 19:15:00 CDT)
  • Taufik Al-Sarraj (Mon Mar 16 2009 - 18:09:38 CDT)
  • Taufik Al-Sarraj (Mon Mar 16 2009 - 15:39:26 CDT)
• superimpose two proteins with different residue numbers
  • John Stone (Mon Aug 31 2009 - 11:34:03 CDT)
  • Soumya Lipsa Rath (Mon Aug 31 2009 - 02:55:13 CDT)
• superimposed structure
  • Axel Kohlmeyer (Sun Dec 20 2009 - 09:55:04 CST)
  • leila karami (Sun Dec 20 2009 - 08:46:03 CST)
  • leila karami (Sun Dec 20 2009 - 08:07:16 CST)
  • Axel Kohlmeyer (Tue Dec 15 2009 - 09:34:12 CST)
  • Joshua Adelman (Tue Dec 15 2009 - 07:15:52 CST)
  • leila karami (Tue Dec 15 2009 - 00:21:04 CST)
• superimposing
  • Beth Ashbridge (Tue Nov 01 2005 - 08:03:15 CST)
• Superimposing 2 dcd files
  • Axel Kohlmeyer (Mon May 02 2016 - 09:46:11 CDT)
  • Josh Vermaas (Mon May 02 2016 - 09:23:10 CDT)
  • Devanand T (Sat Apr 30 2016 - 16:29:01 CDT)
• superimposing frames
  • Luis Gracia (Wed Sep 22 2004 - 14:23:04 CDT)
  • Amarda Shehu (Wed Sep 22 2004 - 12:16:56 CDT)
  • John Stone (Wed Sep 22 2004 - 11:15:19 CDT)
  • Amarda Shehu (Wed Sep 22 2004 - 10:51:57 CDT)
• superimposing groups of three atoms
  • Axel Kohlmeyer (Fri Oct 21 2011 - 13:07:16 CDT)
  • bio lab (Fri Oct 21 2011 - 12:10:51 CDT)
  • JC Gumbart (Fri Oct 21 2011 - 06:53:28 CDT)
  • bio lab (Thu Oct 20 2011 - 06:25:46 CDT)
• superimposing proteins based on a few residues
  • Axel Kohlmeyer (Wed Jul 01 2009 - 17:13:25 CDT)
  • Irene Newhouse (Wed Jul 01 2009 - 15:59:33 CDT)
• superimposing proteins with non-similar coordinates
  • Christopher MacDermaid (Wed Aug 26 2009 - 17:17:34 CDT)
  • Mark M Huntress (Wed Aug 26 2009 - 16:17:41 CDT)
  • John Stone (Wed Aug 26 2009 - 16:31:46 CDT)
  • Schreiner Eduard (Wed Aug 26 2009 - 16:33:39 CDT)
• Superimposing two frames
  • Andrew Dalke (Tue Oct 30 2001 - 16:12:03 CST)
  • Sanjeev B.S. (Mon Oct 22 2001 - 13:05:20 CDT)
  • John Stone (Mon Oct 22 2001 - 10:41:36 CDT)
  • Sanjeev B.S. (Mon Oct 22 2001 - 01:54:50 CDT)
• Superimposing two molecules in VMD
  • Gitte Iversen (Mon Nov 29 1999 - 02:38:09 CST)
• superimposing two structures and getting the coordinates
  • Cesar Luis Avila (Tue Feb 20 2007 - 14:52:36 CST)
  • Brian Bennion (Tue Feb 20 2007 - 14:44:17 CST)
  • John Stone (Tue Feb 20 2007 - 12:56:53 CST)
  • Cesar Luis Avila (Tue Feb 20 2007 - 12:43:52 CST)
  • bertrand russell (Tue Feb 20 2007 - 11:52:03 CST)
• Superimposition problem
  • Qmer_AN?= (Mon Jun 06 2011 - 12:30:04 CDT)
• Superimposition: atomselect for reverse topology
  • John Stone (Mon Sep 08 2008 - 11:16:37 CDT)
  • Axel Kohlmeyer (Sun Sep 07 2008 - 14:09:44 CDT)
  • guillaume.santini_at_free.fr (Sat Sep 06 2008 - 09:34:52 CDT)
• superposition
  • John Stone (Tue Jun 12 2007 - 15:30:23 CDT)
  • lily jin (Tue Jun 12 2007 - 12:05:20 CDT)
  • John Stone (Thu Jul 17 2003 - 19:55:49 CDT)
  • John Stone (Thu Jul 17 2003 - 09:48:20 CDT)
  • Oscar Moran (Thu Jul 17 2003 - 06:53:53 CDT)
• superposition of molecules
  • John Stone (Thu Dec 01 2005 - 15:05:17 CST)
  • Marcela Madrid (Tue Nov 29 2005 - 16:15:26 CST)
• Superposition of Multiple Trajectory Timesteps
  • wenchangyu2006_at_gmail.com (Sun Jan 03 2010 - 02:48:55 CST)
  • Axel Kohlmeyer (Sat Jan 02 2010 - 16:24:07 CST)
  • wenchangyu2006_at_gmail.com (Sat Jan 02 2010 - 16:00:44 CST)
  • John Stone (Fri Jan 01 2010 - 17:43:58 CST)
  • Axel Kohlmeyer (Fri Jan 01 2010 - 10:16:38 CST)
  • wenchangyu2006_at_gmail.com (Fri Jan 01 2010 - 06:28:22 CST)
  • Axel Kohlmeyer (Thu Dec 31 2009 - 10:57:08 CST)
  • Axel Kohlmeyer (Thu Dec 31 2009 - 08:08:03 CST)
  • ÖÜÎIJý (Thu Dec 31 2009 - 05:47:20 CST)
• superposition of two complex according to the same inhibitor
  • Eduard Schreiner (Tue Oct 23 2007 - 01:05:26 CDT)
  • Emilia Wu (Mon Oct 22 2007 - 21:42:59 CDT)
• Support Contours?
  • Dallas Warren (Tue Jun 17 2003 - 21:28:26 CDT)
  • John Stone (Fri Jun 13 2003 - 09:53:49 CDT)
  • Dallas Warren (Wed Jun 11 2003 - 17:16:09 CDT)
• support for gromacs topology files
  • Axel Kohlmeyer (Fri Nov 26 2021 - 19:25:44 CST)
  • Vermaas, Josh (Fri Nov 26 2021 - 18:38:58 CST)
  • Raman Preet Singh (Thu Nov 25 2021 - 06:23:34 CST)
  • Giacomo Fiorin (Wed Nov 24 2021 - 16:47:45 CST)
  • Bennion, Brian (Wed Nov 24 2021 - 14:20:11 CST)
• support for multi-frame XYZ files?
  • John Stone (Tue Aug 26 2003 - 00:13:35 CDT)
  • jsu_at_its.caltech.edu (Mon Aug 25 2003 - 23:59:50 CDT)
• Support for Retina displays?
  • FX (Sun Sep 30 2012 - 14:26:29 CDT)
  • Barry Isralewitz (Sun Sep 30 2012 - 12:08:42 CDT)
  • John Stone (Sun Sep 30 2012 - 11:11:54 CDT)
  • FX (Sun Sep 30 2012 - 05:40:23 CDT)
• support for truncated octahedron
  • Ioana Cozmuta (Tue Apr 01 2003 - 17:39:04 CST)
• Suppress "Info)" messages
  • Bjoern Olausson (Mon Nov 07 2011 - 18:26:50 CST)
  • Axel Kohlmeyer (Mon Nov 07 2011 - 13:15:19 CST)
  • Bjoern Olausson (Mon Nov 07 2011 - 13:15:59 CST)
  • John Stone (Mon Nov 07 2011 - 12:34:07 CST)
  • Bjoern Olausson (Mon Nov 07 2011 - 11:56:06 CST)
• SURF
  • Stefano Guglielmo (Wed Jun 15 2016 - 19:42:01 CDT)
• SURF -rendering problem
  • John Stone (Thu Apr 06 2006 - 00:01:55 CDT)
  • John Stone (Wed Apr 05 2006 - 12:32:49 CDT)
  • M.S.Vijayabaskar (Wed Apr 05 2006 - 04:44:55 CDT)
• SURF and broken surface
  • Vivek Sharma (Fri Aug 01 2008 - 23:16:14 CDT)
  • John Stone (Fri Aug 01 2008 - 23:28:04 CDT)
• Surf drawing representation fails after negative circle radius
  • John Stone (Mon Mar 08 2021 - 01:58:43 CST)
  • Christian Seitz (Mon Mar 08 2021 - 01:50:03 CST)
• SURF error
  • John Stone (Wed Mar 12 2014 - 12:16:09 CDT)
  • Shomesankar Bhunia (Wed Mar 12 2014 - 05:17:40 CDT)
• surf fails with TIP4P water in VMD 1.9b1
  • John Stone (Mon Feb 28 2011 - 10:57:03 CST)
  • chris.neale_at_utoronto.ca (Mon Feb 28 2011 - 10:52:08 CST)
• surf for mac
  • Yusu Wang (Tue Jan 27 2004 - 19:26:16 CST)
  • John Stone (Tue Jan 27 2004 - 15:32:11 CST)
  • Yusu Wang (Tue Jan 27 2004 - 00:21:30 CST)
  • John Stone (Mon Jan 26 2004 - 16:38:59 CST)
  • Yusu Wang (Mon Jan 26 2004 - 14:23:42 CST)
• SURF_BIN and psfgen missing?
  • John Stone (Mon Aug 19 2002 - 09:45:59 CDT)
  • Jeroen Akershoek (Mon Aug 19 2002 - 03:33:41 CDT)
• Surface - upper limit for number of coordinates?
  • John Stone (Wed May 12 2004 - 14:18:15 CDT)
  • Marc Baaden (Tue May 11 2004 - 16:10:22 CDT)
  • John Stone (Tue May 11 2004 - 10:06:48 CDT)
  • dieter blaas (Tue May 11 2004 - 07:08:31 CDT)
  • dieter blaas (Tue May 11 2004 - 07:10:36 CDT)
• Surface accesible area w/v1.8.3beta
  • John Stone (Mon Feb 07 2005 - 19:48:40 CST)
  • Edward Patrick Obrien (Mon Feb 07 2005 - 12:47:34 CST)
  • Edward Patrick Obrien (Mon Feb 07 2005 - 12:03:46 CST)
  • John Stone (Mon Feb 07 2005 - 11:53:12 CST)
  • John Stone (Mon Feb 07 2005 - 11:39:06 CST)
  • Edward Patrick Obrien (Mon Feb 07 2005 - 11:26:16 CST)
• surface area
  • Lubos Vrbka (Thu Feb 08 2007 - 06:16:59 CST)
  • emra Heshmati (Wed Feb 07 2007 - 22:40:56 CST)
• Surface Area Calculation
  • flavio seixas (Wed Jan 08 2014 - 06:40:10 CST)
  • Josh Vermaas (Tue Jan 07 2014 - 14:22:10 CST)
  • Ajasja LjubetiÄ� (Tue Jan 07 2014 - 14:04:19 CST)
  • flavio seixas (Tue Jan 07 2014 - 12:40:57 CST)
• Surface calculation
  • John Stone (Mon Sep 16 2002 - 11:04:51 CDT)
  • Markus Laub (Thu Sep 12 2002 - 11:05:54 CDT)
  • Markus Laub (Thu Sep 12 2002 - 11:05:54 CDT)
• surface charge calculations
  • Ajasja LjubetiÄ� (Fri Apr 25 2014 - 15:55:48 CDT)
  • Fateme Sadat Emami (Fri Apr 25 2014 - 13:28:40 CDT)
• surface from a generic atomic property
  • Anna Amat (Wed May 25 2011 - 11:15:11 CDT)
• surface in raster3d
  • John Stone (Thu Apr 06 2000 - 10:42:51 CDT)
  • Dr Nicolas Le Novere (Thu Apr 06 2000 - 07:18:30 CDT)
• surface max_density error
  • Jim Fonseca (Tue Apr 03 2007 - 15:38:41 CDT)
  • John Stone (Tue Apr 03 2007 - 12:31:16 CDT)
  • Jim Fonseca (Tue Apr 03 2007 - 11:25:49 CDT)
• surface of an atomic property
  • Axel Kohlmeyer (Wed May 25 2011 - 14:01:44 CDT)
  • Anna Amat (Wed May 25 2011 - 11:44:38 CDT)
• Surface plots
  • s.hogg_at_ic.ac.uk (Tue Jan 20 1998 - 10:50:04 CST)
• surface potential on an externally loaded msms surface
  • Sergio Decherchi (Thu Feb 02 2012 - 02:59:49 CST)
  • John Stone (Wed Feb 01 2012 - 16:21:39 CST)
  • Sergio Decherchi (Sat Jan 28 2012 - 14:22:10 CST)
  • John Stone (Sat Jan 28 2012 - 10:38:49 CST)
  • Sergio Decherchi (Sat Jan 28 2012 - 05:57:10 CST)
  • John Stone (Fri Jan 27 2012 - 15:39:03 CST)
  • Sergio Decherchi (Fri Jan 27 2012 - 11:52:12 CST)
• surface problems
  • John Stone (Wed Dec 18 2002 - 09:11:52 CST)
  • Tyler Luchko (Mon Dec 16 2002 - 18:48:45 CST)
• surface rendering across X11 windows
  • John Stone (Mon Aug 02 2010 - 11:34:31 CDT)
  • David Hoover (Thu Jul 29 2010 - 16:15:48 CDT)
• Surface rendering crashes PC
  • John Stone (Tue May 11 2004 - 13:10:40 CDT)
  • Axel Kohlmeyer (Tue May 11 2004 - 10:05:08 CDT)
  • Dieter Blaas (Tue May 11 2004 - 08:13:20 CDT)
• surface representation question
  • Andrew (Thu Dec 09 2010 - 18:47:43 CST)
  • John Stone (Thu Dec 09 2010 - 16:40:35 CST)
  • Axel Kohlmeyer (Thu Dec 09 2010 - 02:46:16 CST)
  • Joseph Bylund (Wed Dec 08 2010 - 12:15:02 CST)
• surface residues of protein
  • John Stone (Thu Mar 03 2005 - 15:24:50 CST)
  • Mgr. Lubos Vrbka (Tue Mar 01 2005 - 05:35:26 CST)
  • Mgr. Lubos Vrbka (Mon Feb 28 2005 - 11:06:05 CST)
  • John Stone (Mon Feb 28 2005 - 10:38:13 CST)
  • John Stone (Mon Feb 28 2005 - 10:17:54 CST)
  • Mgr. Lubos Vrbka (Mon Feb 28 2005 - 07:42:52 CST)
• Surface slices
  • John Stone (Fri May 11 2001 - 13:08:34 CDT)
  • Timm Essigke (Tue May 08 2001 - 07:44:28 CDT)
• Surface won't close
  • Walter Rocchia (Mon Feb 18 2013 - 12:21:12 CST)
  • Axel Kohlmeyer (Mon Feb 18 2013 - 10:37:26 CST)
  • John Stone (Mon Feb 18 2013 - 09:54:24 CST)
  • Sabine Reisser (Mon Feb 18 2013 - 09:45:38 CST)
• Surfaces/Cavities
  • John Stone (Thu Jan 23 2003 - 09:42:38 CST)
  • Alan Wilter Sousa da Silva (Thu Jan 23 2003 - 06:21:18 CST)
  • gianluca santarossa (Thu Jan 23 2003 - 03:17:41 CST)
  • phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 16:04:25 CST)
  • Liu, Zhanwu (Wed Jan 22 2003 - 15:37:35 CST)
  • John Stone (Wed Jan 22 2003 - 14:56:05 CST)
  • phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 14:45:36 CST)
  • John Stone (Wed Jan 22 2003 - 14:16:49 CST)
  • phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 14:01:37 CST)
• Survey: 3 minutes of your time
  • Pieter van 't Hof (Mon Nov 30 2009 - 07:56:47 CST)
• Suspected bug in BaseMolecule::default_mass
  • John Stone (Mon Dec 18 2017 - 09:49:23 CST)
  • Peter Jensen Husen (Mon Dec 18 2017 - 03:35:44 CST)
• SV: Authentication error VMD-xplor
  • Robert Dagil (Fri Mar 18 2011 - 10:13:23 CDT)
• Sv: AutoPSF error with glycana (end of segment error)
  • Rune Thomas Kidmose (Mon Oct 22 2018 - 15:45:04 CDT)
• SV: average area per lipid
  • Bo Højen Justensen (Tue Mar 04 2008 - 02:33:11 CST)
• Sv: MDFF Check -ccc in different VMD versions
  • Rune Thomas Kidmose (Wed Jan 17 2018 - 14:36:12 CST)
• Sv: MDFF rotation
  • Ryan McGreevy (Wed Feb 28 2018 - 13:58:48 CST)
  • Vermaas, Joshua (Mon Feb 26 2018 - 10:32:33 CST)
  • Rune Thomas Kidmose (Mon Feb 26 2018 - 08:12:57 CST)
• Sv: problem with mol IDs when running script from same VMD session.
  • Rune Thomas Kidmose (Sun Jun 03 2018 - 14:33:45 CDT)
• Sv: Sv: MDFF rotation
  • Rune Thomas Kidmose (Wed Feb 28 2018 - 13:43:33 CST)
• Sv: TachyonL-optix rendering question
  • John Stone (Wed Mar 14 2018 - 23:59:31 CDT)
  • Rune Thomas Kidmose (Wed Mar 07 2018 - 12:59:54 CST)
• Sv: VMD on HPC
  • John Stone (Wed Jul 01 2020 - 09:30:41 CDT)
  • Jesper Lykkegaard Karlsen (Wed Jul 01 2020 - 05:37:23 CDT)
• Switching from MP2 in FFTK?
  • Aleksei (Fri Mar 26 2021 - 14:19:52 CDT)
  • Smith, Harper E. (Fri Mar 26 2021 - 13:55:44 CDT)
  • Jason Smith (Fri Mar 26 2021 - 13:25:14 CDT)
  • Bennion, Brian (Fri Mar 26 2021 - 13:19:52 CDT)
  • Smith, Harper E. (Fri Mar 26 2021 - 11:15:10 CDT)
• switching off the location axes
  • Jim Phillips (Fri Mar 09 2001 - 09:39:39 CST)
  • Aitor Gonzalez (Fri Mar 09 2001 - 03:10:03 CST)
  • John Stone (Fri Mar 09 2001 - 02:51:46 CST)
  • Aitor Gonzalez (Fri Mar 09 2001 - 02:48:53 CST)
• Sybyl trajectory
  • jim_at_wellyes.com (Thu Sep 15 2005 - 14:10:23 CDT)
  • John Stone (Tue Sep 06 2005 - 09:43:23 CDT)
  • Josef Scheiber (Tue Sep 06 2005 - 05:38:38 CDT)
  • John Stone (Mon Sep 05 2005 - 13:41:23 CDT)
  • Josef Scheiber (Mon Sep 05 2005 - 01:56:04 CDT)
• Symmetry Tool Error (Draw): invalid command name "getargs" and expected integer but got ""
  • Mario Saavedra (Thu Apr 29 2010 - 13:47:24 CDT)
  • Mario Saavedra (Thu Apr 29 2010 - 08:23:42 CDT)
  • John Stone (Wed Apr 28 2010 - 11:13:11 CDT)
  • Mario Saavedra (Fri Apr 23 2010 - 16:41:06 CDT)
• Symposium on Accelerating Biology
  • jani vinod (Fri Sep 03 2010 - 00:11:03 CDT)
• Synchronization of statements in tcl script
  • John Stone (Wed Apr 01 2009 - 00:31:01 CDT)
  • Raluca Mihaela ANDREI (Tue Mar 31 2009 - 02:57:56 CDT)
  • John Stone (Sat Mar 28 2009 - 14:41:52 CDT)
  • Raluca Mihaela ANDREI (Fri Mar 27 2009 - 12:44:32 CDT)
• Syntax and capabilities of writetrr
  • John Stone (Fri Jan 22 2010 - 10:45:53 CST)
  • Marc Baaden (Fri Jan 22 2010 - 02:43:27 CST)
• syntax error in com file
  • Javaria Ahmad (Tue Feb 20 2007 - 06:15:49 CST)
• Syntax of the "within [distance] of" command
  • Maxim Belkin (Wed Oct 22 2014 - 15:26:05 CDT)
  • Meander Myself (Wed Oct 22 2014 - 13:01:55 CDT)
• sys.argv, python and VMD
  • Michael Kreim (Fri Apr 24 2009 - 08:43:13 CDT)
  • Axel Kohlmeyer (Wed Apr 22 2009 - 10:42:58 CDT)
  • Michael Kreim (Wed Apr 22 2009 - 03:50:59 CDT)
• System requirement for MD 10ns
  • Ashar Malik (Tue Jun 28 2016 - 11:03:49 CDT)
  • Fernando Vallejos-Burgos (Tue Jun 28 2016 - 08:27:42 CDT)
  • Richard Wood (Tue Jun 28 2016 - 08:19:59 CDT)
  • Jérôme Hénin (Tue Jun 28 2016 - 08:15:34 CDT)
  • Ajasja LjubetiÄ� (Tue Jun 28 2016 - 07:57:07 CDT)
  • Naeem Mahmood Ashraf (Tue Jun 28 2016 - 07:24:04 CDT)
• Systematic VMD crash above critical size
  • John Stone (Mon Sep 15 2003 - 10:37:10 CDT)
  • John Stone (Mon Sep 15 2003 - 10:21:50 CDT)
  • Jérôme Hénin (Mon Sep 15 2003 - 09:04:01 CDT)
• TAB key in vmd terminal
  • John Stone (Fri Oct 03 2008 - 11:16:26 CDT)
  • BIN ZHANG (Thu Oct 02 2008 - 23:32:00 CDT)
• Tachyon
  • Craig Amundsen (Mon Jun 19 2017 - 14:27:37 CDT)
  • John Stone (Mon Jun 19 2017 - 13:24:57 CDT)
  • Craig Amundsen (Wed Jun 14 2017 - 11:53:41 CDT)
  • John Stone (Wed Jun 14 2017 - 11:22:06 CDT)
  • Craig Amundsen (Wed Jun 14 2017 - 11:18:12 CDT)
• Tachyon 0.9.10 and recommende version of cuda?
  • Axel Kohlmeyer (Mon May 24 2010 - 07:45:24 CDT)
  • Knut Jørgen Bjuland (Mon May 24 2010 - 05:10:37 CDT)
• Tachyon and text rendering
  • Jérôme Hénin (Thu Feb 23 2006 - 17:04:47 CST)
  • Bogdan Costescu (Thu Feb 23 2006 - 14:37:56 CST)
  • Vlad Cojocaru (Thu Feb 23 2006 - 13:08:44 CST)
• tachyon batch render in parallel
  • John Stone (Wed Aug 13 2014 - 13:16:23 CDT)
  • John Stone (Wed Sep 04 2013 - 11:06:58 CDT)
  • Anne Dara Bowen (Wed Sep 04 2013 - 10:51:22 CDT)
• tachyon configuration failed
  • Albert (Wed Jan 23 2013 - 10:11:17 CST)
  • John Stone (Wed Jan 23 2013 - 09:38:51 CST)
  • Albert (Wed Jan 23 2013 - 09:32:58 CST)
  • Albert (Tue Jan 22 2013 - 11:28:08 CST)
  • John Stone (Tue Jan 22 2013 - 11:11:39 CST)
  • John Stone (Tue Jan 22 2013 - 11:30:55 CST)
  • Albert (Sat Jan 19 2013 - 11:53:19 CST)
  • Albert (Sat Jan 19 2013 - 11:52:07 CST)
• Tachyon dat file as input?
  • Shayna Hilburg (Thu Jun 01 2023 - 01:09:47 CDT)
• Tachyon does not capture the dark colors!
  • John Stone (Wed Dec 19 2012 - 13:54:04 CST)
  • Fatemesadat Emami (Wed Dec 19 2012 - 13:25:20 CST)
• Tachyon does not render surfaces colored by EP
  • John Stone (Wed Feb 16 2005 - 10:03:35 CST)
  • Jérôme Hénin (Wed Feb 16 2005 - 09:53:02 CST)
  • John Stone (Wed Feb 16 2005 - 09:38:47 CST)
  • Vlad Cojocaru (Wed Feb 16 2005 - 04:19:59 CST)
• Tachyon doesn't take into account ColorID
  • Axel Kohlmeyer (Mon Jul 30 2007 - 14:17:13 CDT)
  • John Stone (Mon Jul 30 2007 - 14:32:22 CDT)
  • Henry Yuen (Mon Jul 30 2007 - 12:54:13 CDT)
• Tachyon freezing up
  • Soumik Ghosh (Tue Sep 08 2020 - 16:02:18 CDT)
• Tachyon generation of dat files only
  • John Stone (Thu Nov 14 2013 - 08:32:41 CST)
  • John Stone (Thu Nov 14 2013 - 08:49:04 CST)
  • Shomesankar Bhunia (Thu Nov 14 2013 - 08:43:55 CST)
  • Shomesankar Bhunia (Thu Nov 14 2013 - 08:53:52 CST)
  • Axel Kohlmeyer (Thu Nov 14 2013 - 08:59:48 CST)
  • Shomesankar Bhunia (Thu Nov 14 2013 - 08:04:40 CST)
• Tachyon Internal Rendering
  • John Stone (Mon Jul 26 2004 - 09:41:27 CDT)
  • Anthony Ivetac (Mon Jul 26 2004 - 08:34:05 CDT)
• Tachyon not rendering large scenes
  • Jason Hlozek (Mon Sep 20 2021 - 06:19:57 CDT)
  • John Stone (Fri Sep 17 2021 - 23:54:40 CDT)
  • Carlos Simmerling (Fri Sep 03 2021 - 05:53:07 CDT)
  • Jason Hlozek (Thu Sep 02 2021 - 16:41:14 CDT)
  • Jason Smith (Thu Sep 02 2021 - 12:18:42 CDT)
  • John Stone (Thu Sep 02 2021 - 11:33:56 CDT)
  • Axel Kohlmeyer (Thu Sep 02 2021 - 11:06:30 CDT)
  • Jason Hlozek (Thu Sep 02 2021 - 10:33:43 CDT)
  • John Stone (Thu Sep 02 2021 - 08:43:49 CDT)
  • Jason Hlozek (Thu Sep 02 2021 - 07:29:11 CDT)
• Tachyon Optix BUG vmd-1.9.2beta1
  • John Stone (Mon Nov 24 2014 - 09:02:46 CST)
  • Norman Geist (Mon Nov 24 2014 - 05:12:59 CST)
• Tachyon OptiX vs OSPRay for isosurface and clipping control
  • Rune Thomas Kidmose (Mon Oct 02 2017 - 06:14:05 CDT)
  • Rune Thomas Kidmose (Sun Oct 01 2017 - 14:20:13 CDT)
• Tachyon post-render commands under Win-XP
  • Daniel Holloway (Tue Jun 07 2011 - 05:07:42 CDT)
  • Ajasja LjubetiÄ� (Mon Jun 06 2011 - 09:32:09 CDT)
  • Axel Kohlmeyer (Mon Jun 06 2011 - 09:25:14 CDT)
  • Daniel Holloway (Mon Jun 06 2011 - 08:50:17 CDT)
• Tachyon question
  • John Stone (Mon Feb 17 2014 - 09:43:44 CST)
  • Axel Kohlmeyer (Sun Feb 16 2014 - 10:39:41 CST)
  • Andrew DeYoung (Sun Feb 16 2014 - 09:48:37 CST)
• Tachyon Render and MacOS segfault Issue
  • Ashley Bennett (Wed Nov 02 2016 - 16:39:20 CDT)
• Tachyon render and Tcl scripting
  • John Stone (Tue Sep 16 2008 - 14:00:06 CDT)
  • Shay Amram (Mon Sep 15 2008 - 11:42:00 CDT)
• Tachyon Render not working
  • juan.velasquez (Mon Apr 19 2021 - 04:58:18 CDT)
• Tachyon render problem
  • Töre Han Balta (Sun Dec 11 2011 - 18:24:40 CST)
  • Axel Kohlmeyer (Sun Dec 11 2011 - 18:09:43 CST)
  • Axel Kohlmeyer (Fri Dec 09 2011 - 09:55:22 CST)
  • Ajasja LjubetiÄ� (Fri Dec 09 2011 - 08:22:26 CST)
  • Töre Han Balta (Fri Dec 09 2011 - 02:45:09 CST)
• Tachyon renderer
  • Alexandr Isayev (Wed May 16 2007 - 23:40:54 CDT)
  • zsinkala_at_mtsu.edu (Wed May 16 2007 - 23:03:14 CDT)
• Tachyon Renderer and Multiple Representations
  • Salomon Turgman Cohen (Fri Mar 08 2013 - 09:27:21 CST)
• Tachyon renderer memory error
  • Eiros Zamora, Juan (Tue Feb 09 2016 - 10:15:34 CST)
  • Axel Kohlmeyer (Tue Feb 09 2016 - 05:09:50 CST)
  • Eiros Zamora, Juan (Tue Feb 09 2016 - 04:44:38 CST)
• tachyon renderer syntax
  • Tristan Croll (Sat Jun 28 2014 - 06:28:46 CDT)
  • Axel Kohlmeyer (Fri Jun 27 2014 - 22:07:49 CDT)
  • Tristan Croll (Fri Jun 27 2014 - 18:54:57 CDT)
  • Josh Vermaas (Fri Jun 27 2014 - 10:37:00 CDT)
  • Tristan Croll (Thu Jun 26 2014 - 23:12:33 CDT)
• Tachyon Rendering
  • daniel aguayo (Tue Oct 27 2009 - 14:14:55 CDT)
  • John Stone (Tue Oct 27 2009 - 12:05:06 CDT)
  • Axel Kohlmeyer (Tue Oct 27 2009 - 11:23:48 CDT)
  • daniel aguayo (Tue Oct 27 2009 - 10:27:52 CDT)
  • John Stone (Thu Dec 01 2005 - 10:01:03 CST)
  • Vlad Cojocaru (Thu Dec 01 2005 - 07:01:22 CST)
• tachyon rendering and background color
  • John Stone (Fri Sep 23 2005 - 17:03:03 CDT)
  • John Stone (Fri Sep 23 2005 - 09:50:19 CDT)
  • Nicolas Sapay (Fri Sep 23 2005 - 07:20:07 CDT)
• tachyon rendering on black background figure
  • John Stone (Thu Jul 17 2008 - 16:31:06 CDT)
  • John Stone (Wed Jul 16 2008 - 01:46:53 CDT)
  • Lixia Jin Day (Fri Jul 11 2008 - 13:06:30 CDT)
• Tachyon Rendering with a Surf Representation
  • John Stone (Thu Jul 01 2010 - 10:20:20 CDT)
  • jamesgiacmo_at_aol.com (Wed Jun 30 2010 - 08:29:39 CDT)
  • jamesgiacmo_at_aol.com (Tue Jun 29 2010 - 10:12:11 CDT)
• Tachyon sometimes suddenly freezes up when rendering epotential images
  • John Stone (Mon Jan 25 2021 - 23:59:30 CST)
  • Vermaas, Josh (Mon Jan 18 2021 - 08:41:44 CST)
  • Soumik Ghosh (Sun Jan 17 2021 - 11:00:56 CST)
• Tachyon transparency and depth cueing
  • Tristan Croll (Thu Aug 21 2014 - 02:15:24 CDT)
• Tachyon VMD and MPI
  • John Stone (Tue Jan 21 2003 - 15:44:11 CST)
  • John Stone (Mon Dec 09 2002 - 18:47:57 CST)
  • Cesar Delgado (Mon Dec 09 2002 - 18:25:19 CST)
• Tachyon with DoF ignores FocalLength
  • Peter Kroon (Tue Aug 28 2018 - 03:51:13 CDT)
  • John Stone (Mon Aug 27 2018 - 09:58:44 CDT)
  • Peter Kroon (Mon Aug 27 2018 - 05:40:52 CDT)
  • RABIUL ISLAM (Sat Aug 04 2018 - 07:23:56 CDT)
  • Peter Kroon (Fri Aug 03 2018 - 09:32:48 CDT)
  • RABIUL ISLAM (Fri Aug 03 2018 - 09:50:37 CDT)
  • John Stone (Fri Aug 03 2018 - 08:30:47 CDT)
  • Peter Kroon (Fri Aug 03 2018 - 04:17:28 CDT)
  • John Stone (Thu Aug 02 2018 - 11:58:08 CDT)
  • Vermaas, Joshua (Thu Aug 02 2018 - 09:12:47 CDT)
  • Peter Kroon (Thu Aug 02 2018 - 05:03:21 CDT)
  • Vermaas, Joshua (Wed Aug 01 2018 - 06:02:13 CDT)
  • Peter Kroon (Wed Aug 01 2018 - 03:48:45 CDT)
  • Peter Kroon (Mon Jul 09 2018 - 09:36:14 CDT)
• Tachyon-Optix failure when SSH X11
  • John Stone (Fri Nov 07 2014 - 17:42:40 CST)
  • John Stone (Tue Oct 28 2014 - 10:38:33 CDT)
  • John Stone (Tue Oct 28 2014 - 10:00:57 CDT)
  • Maxim Belkin (Tue Oct 28 2014 - 09:11:08 CDT)
  • Maxim Belkin (Fri Oct 24 2014 - 06:41:00 CDT)
  • Maxim Belkin (Thu Oct 23 2014 - 13:10:28 CDT)
  • John Stone (Thu Oct 23 2014 - 12:34:44 CDT)
  • Maxim Belkin (Thu Oct 23 2014 - 11:15:25 CDT)
  • Maxim Belkin (Thu Oct 23 2014 - 10:34:22 CDT)
  • John Stone (Thu Oct 23 2014 - 10:29:43 CDT)
  • Norman Geist (Thu Oct 23 2014 - 10:01:31 CDT)
• Tachyon-OptiX Rendering User Defined Clipping Planes?
  • Dallas Warren (Wed May 15 2019 - 18:22:26 CDT)
• Tachyon?
  • John Stone (Fri Apr 30 2010 - 12:48:26 CDT)
  • John Stone (Fri Apr 30 2010 - 12:58:46 CDT)
  • Fatemesadat Emami (Fri Apr 30 2010 - 11:41:25 CDT)
• TachyonL-OptiX
  • Dallas Warren (Mon Aug 28 2017 - 19:57:09 CDT)
  • John Stone (Wed Aug 23 2017 - 13:20:05 CDT)
  • Dallas Warren (Tue Aug 22 2017 - 21:01:27 CDT)
  • John Stone (Tue Aug 22 2017 - 12:09:56 CDT)
  • Dallas Warren (Mon Aug 21 2017 - 20:59:58 CDT)
  • Vermaas, Joshua (Mon Aug 21 2017 - 20:18:40 CDT)
  • Dallas Warren (Mon Aug 21 2017 - 19:20:00 CDT)
• TachyonL-OptiX not shown in renderer list
  • John Stone (Thu Jan 22 2015 - 08:58:05 CST)
  • Josh Vermaas (Thu Jan 22 2015 - 08:00:34 CST)
  • Alexandre Suman de Araujo (Thu Jan 22 2015 - 04:56:22 CST)
• TachyonL-Optix render command
  • John Stone (Wed Oct 21 2015 - 15:04:47 CDT)
  • Josh Vermaas (Tue Oct 20 2015 - 13:24:13 CDT)
  • Edoardo Baldi (Tue Oct 20 2015 - 12:45:31 CDT)
• TachyonL-optix rendering question
  • John Stone (Wed Mar 07 2018 - 10:19:21 CST)
  • Rune Thomas Kidmose (Wed Mar 07 2018 - 09:49:40 CST)
• TachyonLOptiXInternal antialiasing
  • Parker de Waal (Mon Jul 06 2015 - 22:44:45 CDT)
• tag heuer rep watch for you;
  • Forest Jefferson (Sat Jun 20 2009 - 05:44:49 CDT)
• Tag Heuer replicas better than originals
  • Errol Lusk (Sun Apr 20 2008 - 18:30:56 CDT)
  • Corine Brady (Sun Apr 20 2008 - 07:33:41 CDT)
  • Mona Gomes (Sat Apr 19 2008 - 17:17:44 CDT)
• Take a look at jaxtr!
  • Sudipta Sinha (Sun Feb 08 2009 - 22:20:40 CST)
• Take a look at the latest replica watches
  • Lillie Lyons (Sat Apr 19 2008 - 07:00:53 CDT)
• tc.h error while compiling vmd
  • John Stone (Wed Nov 14 2012 - 21:59:01 CST)
  • Bennion, Brian (Tue Nov 13 2012 - 16:00:27 CST)
• tc.h problem
  • Albert (Wed Jan 23 2013 - 13:37:11 CST)
  • Albert (Wed Jan 23 2013 - 12:17:49 CST)
  • Albert (Wed Jan 23 2013 - 11:37:28 CST)
  • John Stone (Wed Jan 23 2013 - 11:42:11 CST)
  • John Stone (Wed Jan 23 2013 - 11:35:05 CST)
  • Albert (Wed Jan 23 2013 - 10:50:27 CST)
• TCBG Live Computational Biophysics Workshop Lectures
  • João Ribeiro (Mon Apr 17 2017 - 09:13:24 CDT)
  • João Ribeiro (Mon Apr 10 2017 - 08:24:13 CDT)
• TCBG Workshop lecture videos
  • João Ribeiro (Sat Apr 07 2018 - 10:45:12 CDT)
• Tcl
  • John Stone (Tue Jul 23 2019 - 23:31:12 CDT)
  • Almira Ovagimyan (Fri Jul 19 2019 - 02:14:51 CDT)
  • Almira Ovagimyan (Thu Jul 18 2019 - 07:36:15 CDT)
  • Vermaas, Joshua (Thu Apr 11 2019 - 19:16:36 CDT)
  • Almira Ovagimyan (Thu Apr 11 2019 - 15:20:42 CDT)
• Tcl 8.5.x in upcoming versions of VMD...
  • Axel Kohlmeyer (Thu Mar 27 2008 - 18:14:23 CDT)
  • John Stone (Thu Mar 27 2008 - 18:11:20 CDT)
  • Axel Kohlmeyer (Thu Mar 27 2008 - 17:32:20 CDT)
  • John Stone (Thu Mar 27 2008 - 17:19:47 CDT)
• TCL and Plugins
  • John Stone (Tue Aug 09 2011 - 13:45:32 CDT)
  • Axel Kohlmeyer (Tue Aug 09 2011 - 13:48:48 CDT)
  • Mark Suhovecky (Tue Aug 09 2011 - 12:43:22 CDT)
  • Mark Suhovecky (Tue Aug 09 2011 - 12:23:41 CDT)
• tcl and vmd
  • Axel Kohlmeyer (Fri Dec 12 2014 - 05:20:29 CST)
  • Ashar Malik (Thu Dec 11 2014 - 18:01:48 CST)
  • Eric Smoll (Thu Dec 11 2014 - 16:43:18 CST)
• TCL atomselect bug
  • John Stone (Wed Mar 30 2005 - 16:19:30 CST)
  • John Stone (Tue Mar 29 2005 - 14:56:46 CST)
  • Josh Ward (Tue Mar 29 2005 - 14:47:27 CST)
  • John Stone (Tue Mar 29 2005 - 14:10:38 CST)
  • John Stone (Tue Mar 29 2005 - 10:02:11 CST)
  • Josh Ward (Tue Mar 29 2005 - 09:36:39 CST)
  • John Stone (Mon Mar 28 2005 - 11:58:17 CST)
  • Josh Ward (Thu Mar 24 2005 - 15:49:44 CST)
• TCL Callbacks
  • John Stone (Thu Mar 31 2011 - 15:04:15 CDT)
  • Julia Doh (Wed Mar 30 2011 - 15:33:28 CDT)
  • John Stone (Thu Mar 17 2011 - 14:11:30 CDT)
  • Julia Doh (Wed Mar 16 2011 - 13:45:31 CDT)
• tcl code atomselect problem in analysis
  • John Stone (Mon Apr 23 2007 - 11:12:07 CDT)
  • Peter Freddolino (Mon Apr 23 2007 - 10:57:10 CDT)
  • Jianhui Tian (Mon Apr 23 2007 - 10:32:12 CDT)
  • Peter Freddolino (Mon Apr 23 2007 - 10:10:20 CDT)
  • Jianhui Tian (Mon Apr 23 2007 - 09:24:48 CDT)
• TCL code for psf file
  • Ashar Malik (Sun Dec 27 2015 - 12:57:33 CST)
  • Mohsen Farshad (Sun Dec 27 2015 - 12:01:38 CST)
• tcl command "lremove" not working in VMD text mode
  • Devanand T (Wed Sep 06 2017 - 16:38:31 CDT)
  • John Stone (Wed Sep 06 2017 - 16:33:52 CDT)
  • Devanand T (Wed Sep 06 2017 - 16:08:44 CDT)
• tcl command to save structure to file?
  • Chang, Christopher (Wed Sep 28 2005 - 18:30:16 CDT)
  • Samuel Flores (Wed Sep 28 2005 - 14:05:20 CDT)
• tcl command to write amber format files
  • Ajasja LjubetiÄ� (Wed Jan 27 2016 - 03:28:24 CST)
  • Akshay Bhatnagar (Tue Jan 26 2016 - 22:40:18 CST)
• Tcl commands and X11
  • Axel Kohlmeyer (Fri Jun 12 2009 - 13:26:59 CDT)
  • craig bullington (Fri Jun 12 2009 - 11:48:37 CDT)
• Tcl commands on Mac
  • Axel Kohlmeyer (Mon Jun 26 2006 - 18:32:57 CDT)
  • John Stone (Mon Jun 26 2006 - 18:01:55 CDT)
  • Oliver Inderwildi (Mon Jun 26 2006 - 17:51:15 CDT)
• TCL equivalent for ---> Mouse Pick Mode Center
  • Jeffrey A Tibbitt (Mon Jan 01 2018 - 18:55:49 CST)
• TCL for adding bonds?
  • peter.schellenberg_at_ipht-jena.de (Sun Jul 10 2005 - 05:59:27 CDT)
  • Eduard Schreiner (Fri Jul 08 2005 - 03:26:15 CDT)
  • Jérôme Hénin (Fri Jul 08 2005 - 02:58:31 CDT)
  • Chang, Christopher (Thu Jul 07 2005 - 11:30:21 CDT)
• TCL For Loop Problem
  • Ashar Malik (Sun Feb 24 2019 - 22:24:08 CST)
  • Axel Kohlmeyer (Sun Feb 24 2019 - 22:18:12 CST)
  • McGuire, Kelly (Sun Feb 24 2019 - 22:25:03 CST)
  • McGuire, Kelly (Sun Feb 24 2019 - 21:47:16 CST)
• TCL force script
  • Karteek K. Bejagam (Thu Oct 01 2020 - 03:02:18 CDT)
  • Adupa Vasista (Thu Oct 01 2020 - 02:57:45 CDT)
  • Basanta Acharya (Thu Oct 01 2020 - 02:29:01 CDT)
• Tcl foreach/for loop error
  • Vermaas, Joshua (Fri Sep 06 2019 - 08:52:22 CDT)
  • Alex Hummels (Fri Sep 06 2019 - 08:50:48 CDT)
  • Jérôme Hénin (Fri Sep 06 2019 - 08:20:21 CDT)
  • Alex Hummels (Fri Sep 06 2019 - 07:23:54 CDT)
  • Jérôme Hénin (Fri Sep 06 2019 - 04:34:26 CDT)
  • Alex Hummels (Thu Sep 05 2019 - 16:28:51 CDT)
• tcl fscript or Removeing protein flucutation
  • Axel Kohlmeyer (Wed Nov 26 2008 - 10:24:18 CST)
  • karthigeyan karthigeyantp (Wed Nov 26 2008 - 05:45:33 CST)
• tcl logging and plugins
  • John Stone (Mon Apr 24 2006 - 14:07:26 CDT)
  • Jeffrey A Tibbitt (Mon Apr 24 2006 - 13:58:01 CDT)
• tcl measure bond length script
  • Josh Vermaas (Wed Sep 14 2022 - 08:05:29 CDT)
  • Ryan Woltz (Tue Sep 13 2022 - 17:25:08 CDT)
• Tcl plugin development and debugging
  • Axel Kohlmeyer (Tue Apr 12 2011 - 12:05:24 CDT)
  • Anssi Nurminen (Tue Apr 12 2011 - 12:11:47 CDT)
  • Goldsmith, Jacob (Tue Apr 12 2011 - 11:57:28 CDT)
  • Anssi Nurminen (Tue Apr 12 2011 - 11:55:16 CDT)
  • Ahmet Bakan (Tue Apr 12 2011 - 11:38:57 CDT)
  • Axel Kohlmeyer (Tue Apr 12 2011 - 11:38:34 CDT)
  • Anssi Nurminen (Tue Apr 12 2011 - 11:21:56 CDT)
  • Anssi Nurminen (Tue Apr 12 2011 - 10:49:32 CDT)
  • Axel Kohlmeyer (Tue Apr 12 2011 - 10:38:19 CDT)
  • Axel Kohlmeyer (Tue Apr 12 2011 - 10:56:17 CDT)
  • Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
  • John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
  • Anssi Nurminen (Tue Apr 12 2011 - 06:14:36 CDT)
• tcl plugins
  • Melvyn Drag (Sat Jul 18 2015 - 20:20:22 CDT)
• tcl procedure to set data
  • Axel Kohlmeyer (Sun Nov 06 2011 - 20:31:00 CST)
  • Casey Johnson (Sun Nov 06 2011 - 19:26:25 CST)
• tcl question
  • Mgr. Lubos Vrbka (Wed Apr 26 2006 - 06:29:48 CDT)
  • John Stone (Tue Apr 25 2006 - 10:15:55 CDT)
  • Mgr. Lubos Vrbka (Tue Apr 25 2006 - 03:31:16 CDT)
  • Juan Alfredo Freites (Sat Feb 07 2004 - 12:28:18 CST)
  • Axel Kohlmeyer (Sat Feb 07 2004 - 08:13:33 CST)
  • Vlad Cojocaru (Sat Feb 07 2004 - 06:47:17 CST)
• TCl question: preventing STDOUT
  • Axel Kohlmeyer (Thu Feb 15 2007 - 06:37:36 CST)
  • namd vmd (Thu Feb 15 2007 - 05:59:50 CST)
• TCL Related Question
  • Phelan Jr., Frederick R. Dr. (Mon Feb 28 2011 - 21:34:31 CST)
• tcl script
  • Josh Vermaas (Tue Jul 08 2014 - 11:27:51 CDT)
  • Mihaela Drenscko (Tue Jul 08 2014 - 09:27:06 CDT)
  • Axel Kohlmeyer (Fri Nov 25 2011 - 14:52:32 CST)
  • Thomas Evangelidis (Fri Nov 25 2011 - 13:51:07 CST)
  • Axel Kohlmeyer (Fri Nov 25 2011 - 13:16:32 CST)
  • Ban Arn (Fri Nov 25 2011 - 12:16:47 CST)
  • Ajasja Ljubetiè (Fri Mar 11 2011 - 14:12:52 CST)
  • Goldsmith, Jacob (Fri Mar 11 2011 - 13:59:36 CST)
  • Axel Kohlmeyer (Fri Mar 11 2011 - 11:49:39 CST)
  • ban arn (Fri Mar 11 2011 - 11:15:51 CST)
  • Ajasja LjubetiÄ� (Fri Mar 11 2011 - 10:17:15 CST)
  • ban arn (Fri Mar 11 2011 - 09:06:00 CST)
  • JC Gumbart (Wed Mar 09 2011 - 11:55:58 CST)
  • Axel Kohlmeyer (Wed Mar 09 2011 - 09:41:31 CST)
  • menica dibenedetto (Wed Mar 09 2011 - 08:32:25 CST)
  • Axel Kohlmeyer (Wed Aug 18 2010 - 04:01:00 CDT)
  • Cun Zhang (Wed Aug 18 2010 - 03:25:21 CDT)
  • deepti nayar (Wed Aug 18 2010 - 01:14:06 CDT)
  • Leonardo Trabuco (Thu Jan 22 2009 - 00:01:39 CST)
  • varsha gautham (Wed Jan 21 2009 - 22:45:29 CST)
• Tcl script and plugin
  • Marcos Sotomayor (Sat Jun 25 2005 - 17:37:37 CDT)
  • Jay Lee (Sat Jun 25 2005 - 15:00:13 CDT)
• tcl script causes VMD crash...
  • John Stone (Mon Jun 30 2014 - 22:35:40 CDT)
  • Alberto Sergio Garay (Wed Jun 25 2014 - 07:55:08 CDT)
• Tcl script error
  • Ban Arn (Thu Feb 09 2012 - 16:17:48 CST)
  • John Stone (Thu Feb 09 2012 - 14:23:21 CST)
  • John Stone (Wed Feb 08 2012 - 15:18:44 CST)
  • Ban Arn (Wed Feb 08 2012 - 15:59:22 CST)
  • Ban Arn (Mon Feb 06 2012 - 11:57:57 CST)
  • Axel Kohlmeyer (Mon Feb 06 2012 - 11:54:35 CST)
  • Ban Arn (Mon Feb 06 2012 - 12:05:49 CST)
  • Axel Kohlmeyer (Mon Feb 06 2012 - 12:02:47 CST)
  • Ban Arn (Mon Feb 06 2012 - 11:28:12 CST)
  • Axel Kohlmeyer (Mon Feb 06 2012 - 11:46:43 CST)
  • John Stone (Mon Feb 06 2012 - 11:23:05 CST)
  • Ban Arn (Mon Feb 06 2012 - 11:12:12 CST)
  • John Stone (Mon Feb 06 2012 - 10:58:26 CST)
  • Ban Arn (Mon Feb 06 2012 - 10:50:14 CST)
• tcl script for averaging a parameter along length
  • Nima Nouri (Thu Jan 22 2015 - 03:40:31 CST)
• TCL script for creating multiple representations on the same molecule
  • John Stone (Tue Oct 06 2020 - 11:12:27 CDT)
  • Peter Freddolino (Wed Sep 30 2020 - 21:22:36 CDT)
  • William Howe (Wed Sep 30 2020 - 19:17:54 CDT)
• Tcl script for hydration shell of backbone carbonyl oxygen for whole trajectory.
  • M K (Thu Oct 22 2015 - 04:10:36 CDT)
  • dipak sanap (Thu Oct 22 2015 - 01:06:39 CDT)
• TCL Script for PCA?
  • Efthymiou, Christos (Mon Jan 09 2023 - 15:24:06 CST)
• tcl script for vmd troubleshooting
  • Martin, Erik W (Fri Jan 04 2013 - 11:17:30 CST)
• tcl script for vmd troubleshooting. .
  • JC Gumbart (Fri Jan 04 2013 - 16:48:37 CST)
  • Martin, Erik W (Fri Jan 04 2013 - 14:05:14 CST)
• tcl script for writinging modified pdb co-ordinates
  • Andrew Dalke (Thu Dec 04 1997 - 18:41:03 CST)
  • Nithin Rai (Thu Dec 04 1997 - 16:13:22 CST)
• tcl script memory problem - NOT in atomselect
  • Johannes Müllegger (Tue Feb 19 2008 - 11:19:04 CST)
  • Axel Kohlmeyer (Tue Feb 19 2008 - 07:35:20 CST)
  • Johannes Müllegger (Mon Feb 18 2008 - 21:45:42 CST)
• tcl script not executed when submitted using a slurm script
  • Bennion, Brian (Wed Dec 20 2017 - 10:45:35 CST)
  • Stephen Thomas (Wed Dec 20 2017 - 09:26:52 CST)
  • Stephen Thomas (Wed Dec 20 2017 - 10:14:35 CST)
  • Ashar Malik (Wed Dec 20 2017 - 09:50:11 CST)
  • John Stone (Wed Dec 20 2017 - 09:08:23 CST)
  • John Stone (Wed Dec 20 2017 - 08:58:09 CST)
  • Stephen Thomas (Wed Dec 20 2017 - 08:59:11 CST)
  • Stephen Thomas (Wed Dec 20 2017 - 08:40:05 CST)
  • Ashar Malik (Wed Dec 20 2017 - 01:38:26 CST)
  • Stephen Thomas (Tue Dec 19 2017 - 23:55:17 CST)
• tcl script problem using -dispdev text ..
  • John Stone (Fri Nov 19 2010 - 21:40:52 CST)
  • Axel Kohlmeyer (Fri Nov 19 2010 - 06:27:46 CST)
  • Alberto Sergio Garay (Fri Nov 19 2010 - 04:33:33 CST)
  • Axel Kohlmeyer (Thu Nov 18 2010 - 08:28:41 CST)
  • Jérôme Hénin (Thu Nov 18 2010 - 08:07:24 CST)
  • Alberto Sergio Garay (Thu Nov 18 2010 - 07:12:46 CST)
• tcl script problem with "atomselect' combined with "measure fit ...order"
  • Roman Petrenko (Tue Jul 29 2008 - 15:26:13 CDT)
  • Loison Claire (Tue Jul 29 2008 - 09:16:36 CDT)
• TCL script to measure distance between two points in space
  • Ashar Malik (Wed Mar 10 2021 - 18:01:10 CST)
  • William Howe (Wed Mar 10 2021 - 17:19:18 CST)
• tcl script to pull pdb file from tgz
  • Bennion, Brian (Fri Jun 22 2018 - 11:19:24 CDT)
  • Axel Kohlmeyer (Thu Jun 21 2018 - 22:18:58 CDT)
  • John Stone (Thu Jun 21 2018 - 21:40:58 CDT)
  • Bennion, Brian (Fri Jun 15 2018 - 10:08:50 CDT)
• TCL script to track molecules moving within a specified region each time frame
  • Dive, Aniruddha Mukund (Tue May 17 2016 - 11:26:04 CDT)
  • Chitrak Gupta (Mon May 16 2016 - 13:53:54 CDT)
  • Dive, Aniruddha Mukund (Mon May 16 2016 - 12:57:18 CDT)
  • Chitrak Gupta (Mon May 16 2016 - 11:30:33 CDT)
  • Dive, Aniruddha Mukund (Mon May 16 2016 - 02:52:14 CDT)
• Tcl scripting
  • Nuno R. L. Ferreira (Thu Feb 09 2006 - 03:07:25 CST)
  • John Stone (Wed Feb 08 2006 - 17:34:53 CST)
  • Dan Wright (Wed Feb 08 2006 - 12:14:41 CST)
  • daniel aguayo (Tue Feb 07 2006 - 17:34:22 CST)
  • Mario Valle (Mon Feb 06 2006 - 22:46:08 CST)
  • Nuno R. L. Ferreira (Mon Feb 06 2006 - 13:13:06 CST)
• Tcl scripting - Coloring residues by frame along trajectory
  • Maurício Menegatti Rigo (Tue Aug 12 2014 - 08:31:12 CDT)
  • Maurício Menegatti Rigo (Fri Aug 08 2014 - 13:12:31 CDT)
• tcl scripting for adding hydrogens to particular atoms in multiple pdb files
  • Peter Freddolino (Thu Jan 28 2016 - 14:21:18 CST)
  • Shoresh Shafei (Thu Jan 28 2016 - 06:52:10 CST)
  • Peter Freddolino (Thu Jan 28 2016 - 00:00:28 CST)
  • Shoresh Shafei (Wed Jan 27 2016 - 10:15:58 CST)
• Tcl Scripting Question
  • John Stone (Mon May 10 2021 - 12:13:13 CDT)
  • Ray, William (Tue May 04 2021 - 18:15:24 CDT)
  • Mcguire, Kelly (Tue May 04 2021 - 15:53:02 CDT)
  • John Stone (Tue May 04 2021 - 15:44:24 CDT)
  • Vermaas, Josh (Tue May 04 2021 - 14:48:00 CDT)
  • Ashar Malik (Tue May 04 2021 - 14:11:45 CDT)
  • René Hafner TUK (Tue May 04 2021 - 13:57:07 CDT)
  • Mcguire, Kelly (Tue May 04 2021 - 12:45:55 CDT)
• TCL scripting question: how to make a list of atomselections persistent?
  • Tristan Croll (Thu Mar 27 2014 - 19:04:22 CDT)
• Tcl scripting within NAMD configuration file
  • Chandra Ramananjara (Fri Mar 24 2006 - 09:26:18 CST)
  • Chandra Ramananjara (Thu Mar 23 2006 - 09:12:56 CST)
• Tcl Scripts Fails Unless Run in Tkconsole
  • Alexander Adams (Thu May 26 2022 - 19:53:58 CDT)
  • John Stone (Thu May 26 2022 - 19:46:00 CDT)
  • Alexander Adams (Thu May 26 2022 - 19:35:44 CDT)
  • Alexander Adams (Thu May 26 2022 - 17:50:41 CDT)
• tcl scripts in parallel in VMD?
  • Axel Kohlmeyer (Tue Jan 06 2009 - 10:06:25 CST)
  • Maxim Paliy (Tue Jan 06 2009 - 08:14:41 CST)
• Tcl startup error on 3X3 tiled display
  • John Stone (Fri Nov 19 2004 - 13:05:31 CST)
  • ladyg30_at_eden.rutgers.edu (Fri Nov 19 2004 - 13:00:32 CST)
• TCL strangeness
  • Axel Kohlmeyer (Thu Dec 08 2011 - 22:37:16 CST)
  • Ben Roberts (Thu Dec 08 2011 - 21:17:45 CST)
  • Gianluca Interlandi (Thu Dec 08 2011 - 20:27:28 CST)
  • Ben Roberts (Thu Dec 08 2011 - 20:07:16 CST)
  • Gianluca Interlandi (Thu Dec 08 2011 - 18:09:20 CST)
• TCL string operation
  • Jérôme Hénin (Sat Apr 03 2004 - 10:10:56 CST)
  • Justin Gullingsrud (Sat Apr 03 2004 - 09:27:12 CST)
  • Ahmet Bakan (Sat Apr 03 2004 - 07:48:40 CST)
• tcl syntax problem
  • Axel Kohlmeyer (Wed Jul 27 2005 - 15:09:23 CDT)
  • John Stone (Wed Jul 27 2005 - 11:47:32 CDT)
  • Ramon Crehuet (Wed Jul 27 2005 - 11:18:53 CDT)
• tcl variable withing variable name
  • Vlad Cojocaru (Thu Apr 19 2007 - 11:13:21 CDT)
  • Ana Celia Araujo Vila Verde (Thu Apr 19 2007 - 10:29:43 CDT)
  • Peter Freddolino (Thu Apr 19 2007 - 09:38:53 CDT)
  • Axel Kohlmeyer (Thu Apr 19 2007 - 08:30:34 CDT)
  • Vlad Cojocaru (Thu Apr 19 2007 - 07:58:27 CDT)
• TCL wrapper for linear algebra package in VMD
  • Jan Saam (Tue Sep 05 2006 - 19:12:07 CDT)
• tcl-reading files
  • Anna Modzelewska (Mon Feb 13 2006 - 08:52:19 CST)
  • andrea spitaleri (Mon Feb 13 2006 - 08:42:49 CST)
  • Nuno R. L. Ferreira (Mon Feb 13 2006 - 08:10:20 CST)
  • Anna Modzelewska (Mon Feb 13 2006 - 07:35:26 CST)
• Tcl-wrapped "lightweight plugin" in C++
  • Jérôme Hénin (Thu Jun 03 2010 - 07:56:51 CDT)
  • John Stone (Tue Jun 01 2010 - 11:04:09 CDT)
  • Jérôme Hénin (Sun May 30 2010 - 04:26:07 CDT)
  • John Stone (Thu May 27 2010 - 22:16:44 CDT)
  • Jérôme Hénin (Thu May 27 2010 - 07:27:00 CDT)
• tcl/python and readline not working
  • John Stone (Fri Oct 28 2005 - 09:45:49 CDT)
  • Craig Maloney (Fri Oct 28 2005 - 00:05:47 CDT)
  • Robert Brunner (Thu Oct 27 2005 - 11:09:25 CDT)
  • Craig Maloney (Wed Oct 26 2005 - 17:48:27 CDT)
• Tcl/Tk misbehave after upgrading MacOS to Sonoma (14.0)
  • Cassiano Langini (Mon Oct 23 2023 - 05:17:56 CDT)
• TCL/VMD problem
  • Corenflos, Steven Charles (Wed Mar 05 2008 - 11:59:20 CST)
  • John Stone (Wed Mar 05 2008 - 12:25:42 CST)
• tcl8.6
  • Nuno Sousa Cerqueira (Thu Mar 03 2016 - 15:28:24 CST)
  • Vlad Cojocaru (Thu Mar 03 2016 - 15:01:24 CST)
  • John Stone (Thu Mar 03 2016 - 12:59:50 CST)
  • Axel Kohlmeyer (Thu Mar 03 2016 - 12:52:12 CST)
  • Nuno Sousa Cerqueira (Thu Mar 03 2016 - 11:19:13 CST)
  • Nuno Sousa Cerqueira (Thu Mar 03 2016 - 10:28:43 CST)
• TCL: centering molecule into middle of display after translation
  • John Stone (Wed Oct 12 2005 - 17:54:13 CDT)
  • pascal.baillod_at_epfl.ch (Wed Oct 05 2005 - 12:13:53 CDT)
• tcl: wait for exec
  • Luis Gracia (Fri Jul 30 2004 - 14:26:52 CDT)
  • John Stone (Thu Jul 29 2004 - 21:50:46 CDT)
  • Luis Gracia (Thu Jul 29 2004 - 19:09:04 CDT)
• TclBC of an asymmetric system
  • Thierry Oscar Wambo (Wed Apr 22 2015 - 12:56:27 CDT)
• temp autocorrelation
  • Swarna Patra (Fri Jul 21 2006 - 00:56:37 CDT)
• Temperature/Beta factor coloring
  • MengJuei Hsieh (Tue May 20 2003 - 02:00:26 CDT)
• template script for cavity volume
  • Francesco Pietra (Tue May 12 2015 - 13:06:29 CDT)
• Temporary Files for STRIDE Inaccessible on Windows 8
  • John Stone (Thu Jul 24 2014 - 12:47:57 CDT)
  • Chris Ing (Thu Jul 03 2014 - 16:08:03 CDT)
• test
  • masoumeh ozmaeian (Sat Oct 16 2010 - 14:26:58 CDT)
  • Katherine Parra (Tue Feb 24 2009 - 10:01:41 CST)
  • John Stone (Tue Feb 24 2009 - 08:59:26 CST)
  • Lee Amy (Tue Feb 24 2009 - 07:48:25 CST)
  • John Stone (Tue Mar 25 2008 - 21:59:05 CDT)
  • cong chen (Tue Mar 25 2008 - 18:39:50 CDT)
  • John Stone (Fri Jan 30 2004 - 10:02:45 CST)
  • Vlad Cojocaru (Fri Jan 30 2004 - 07:36:53 CST)
• test - 0123456789abcdefghijklnmopqrstuvwxyz
  • Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 16:17:28 CST)
• Test build of CHARMM PBEQ electrostatics map reader plugin
  • John Stone (Thu Oct 12 2006 - 16:10:49 CDT)
• Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x...
  • Axel Kohlmeyer (Tue Jan 20 2009 - 17:31:19 CST)
  • John Stone (Fri Jan 16 2009 - 15:34:21 CST)
• Test email
  • John Stone (Fri Feb 05 2021 - 13:37:11 CST)
  • Giuseppe Licari (Fri Feb 05 2021 - 12:44:46 CST)
  • Giuseppe Licari (Fri Feb 05 2021 - 12:24:38 CST)
  • John Stone (Fri Feb 05 2021 - 12:30:37 CST)
  • GIUSEPPE LEONARDO LICARI (Fri Feb 05 2021 - 12:04:17 CST)
  • Dow Hurst DPHURST (Tue Jun 21 2005 - 14:32:05 CDT)
• Test Graphic card performance using VMD as benchmark
  • Axel Kohlmeyer (Fri Nov 19 2010 - 15:50:23 CST)
  • TRINH Minh Hieu (Thu Nov 18 2010 - 06:18:04 CST)
• Test release of VMD movie maker
  • Margaret Cheung (Mon Mar 25 2002 - 03:46:35 CST)
  • John Stone (Fri Mar 22 2002 - 10:39:38 CST)
  • Margaret Cheung (Fri Mar 22 2002 - 02:32:22 CST)
  • John Stone (Fri Mar 22 2002 - 01:43:28 CST)
  • Margaret Cheung (Fri Mar 22 2002 - 01:50:55 CST)
  • Margaret Cheung (Fri Mar 22 2002 - 00:17:58 CST)
  • John Stone (Thu Mar 21 2002 - 22:59:10 CST)
  • Margaret Cheung (Thu Mar 21 2002 - 22:34:58 CST)
  • John Stone (Wed Jan 16 2002 - 11:38:14 CST)
• Test version of 1.8.4 posted for Situs users and others...
  • John Stone (Fri Oct 14 2005 - 16:15:43 CDT)
• Test version of VMD 1.8.3 for Linux on AMD x86_64 (Athlon64 / Opteron) available...
  • John Stone (Mon Feb 23 2004 - 14:14:33 CST)
• Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..)
  • John Stone (Wed Jul 06 2005 - 13:02:03 CDT)
  • Oliver Otto (Wed Jul 06 2005 - 12:38:43 CDT)
  • John Stone (Tue Jul 05 2005 - 09:58:58 CDT)
  • Shantenu Jha (Mon Jul 04 2005 - 14:32:24 CDT)
  • John Stone (Fri Jun 24 2005 - 11:21:56 CDT)
  • Oliver Otto (Thu Jun 23 2005 - 05:32:24 CDT)
  • John Stone (Wed Jun 22 2005 - 13:34:51 CDT)
  • John Stone (Wed Jun 22 2005 - 10:58:38 CDT)
  • Oliver Otto (Wed Jun 22 2005 - 05:34:37 CDT)
  • John Stone (Tue Jun 21 2005 - 13:51:51 CDT)
• Test version of VMD for flaky graphics boards/drivers
  • John Stone (Fri Jun 18 2004 - 15:53:18 CDT)
• test versions of VMD 1.8.5 -DLPOLY
  • John Stone (Thu Aug 10 2006 - 11:51:38 CDT)
  • Javier Sacristan (Thu Aug 10 2006 - 11:44:43 CDT)
• test VMD mailist post
  • Erik Winardi (Thu Nov 08 2012 - 14:42:36 CST)
• Test VMD with CUDA support for Linux and MacOS X 10.5.2...
  • John Stone (Thu Mar 27 2008 - 17:13:15 CDT)
• testing vmd1.9.1
  • John Stone (Wed Feb 08 2012 - 13:34:10 CST)
  • Bennion, Brian (Mon Feb 06 2012 - 18:19:19 CST)
• Tethering, or restraining, part of a molecule during MD playback
  • Axel Kohlmeyer (Mon Mar 25 2013 - 01:42:46 CDT)
  • John Keller (Mon Mar 25 2013 - 00:14:44 CDT)
• tetrahedral order parameter
  • Subrata Paul (Tue Sep 10 2013 - 01:12:51 CDT)
• Tetrahedral representation
  • John Stone (Wed Aug 13 2008 - 18:14:03 CDT)
  • John Stone (Wed Aug 13 2008 - 13:07:04 CDT)
  • John Stone (Thu Jul 17 2008 - 16:14:35 CDT)
  • FX (Thu Jul 17 2008 - 06:19:09 CDT)
  • Axel Kohlmeyer (Wed Jul 16 2008 - 18:24:09 CDT)
  • FX (Wed Jul 16 2008 - 17:20:22 CDT)
• Text command for isosurface
  • Leonardo Trabuco (Wed Nov 03 2010 - 02:13:15 CDT)
  • Thomas Steinbrecher (Wed Nov 03 2010 - 01:51:37 CDT)
• Text Editor Got Me. . .
  • Marc Charendoff (Thu Aug 24 2006 - 19:48:11 CDT)
• Text in line with line
  • Nuno Sousa Cerqueira (Wed Aug 24 2011 - 21:21:52 CDT)
• Text mode data extraction without trajectory update
  • Vermaas, Joshua (Fri Mar 23 2018 - 12:01:22 CDT)
  • Udaya Dahal (Sun Mar 18 2018 - 09:44:33 CDT)
  • Ashar Malik (Sun Mar 18 2018 - 07:50:26 CDT)
  • Udaya Dahal (Sun Mar 18 2018 - 01:31:36 CDT)
• text mode to calculate Internal Energy
  • John Stone (Wed Sep 24 2003 - 13:39:30 CDT)
  • Sichun Yang (Wed Sep 24 2003 - 11:48:34 CDT)
• Text size in the VMD at high-resolutions
  • John Stone (Mon Oct 12 2015 - 11:34:07 CDT)
  • Dow Hurst (Sat Oct 10 2015 - 22:27:00 CDT)
  • Miroslav Krepl (Wed Sep 16 2015 - 09:41:29 CDT)
  • Miroslav Krepl (Tue Jul 14 2015 - 15:13:26 CDT)
  • John Stone (Tue Jul 14 2015 - 10:12:18 CDT)
  • Miroslav Krepl (Fri Jul 10 2015 - 16:29:49 CDT)
  • John Stone (Thu Jul 09 2015 - 23:20:13 CDT)
  • Miroslav Krepl (Wed Jul 08 2015 - 11:14:36 CDT)
• text timer in vmd animations
  • John Stone (Mon Oct 05 2009 - 22:22:10 CDT)
  • maria goranovic (Mon Sep 28 2009 - 10:53:04 CDT)
  • Axel Kohlmeyer (Mon Sep 28 2009 - 10:40:38 CDT)
  • John Stone (Mon Sep 28 2009 - 10:07:31 CDT)
  • maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
  • maria goranovic (Mon Sep 28 2009 - 10:19:41 CDT)
  • Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
  • maria goranovic (Mon Sep 28 2009 - 04:57:16 CDT)
• Text-line command for Graphics?
  • John Stone (Fri Apr 25 2003 - 16:05:46 CDT)
  • Changbong Hyeon (Fri Apr 25 2003 - 16:00:40 CDT)
• Text-mode VMD
  • John Stone (Thu Sep 20 2012 - 16:31:17 CDT)
  • John Stone (Wed Aug 29 2012 - 14:26:40 CDT)
  • David Minh (Wed Aug 29 2012 - 13:17:18 CDT)
• Text/Labels on ray tracing external renderer
  • Ignacio Fernández Galván (Wed Jun 27 2007 - 02:07:23 CDT)
  • John Stone (Tue Jun 26 2007 - 15:25:00 CDT)
  • John Stone (Tue Jun 26 2007 - 15:06:53 CDT)
  • Jay Shore (Sat Jun 23 2007 - 09:31:40 CDT)
  • Petrica GASCA (Sat Jun 23 2007 - 06:06:55 CDT)
  • John Stone (Fri Jun 22 2007 - 15:35:12 CDT)
  • Axel Kohlmeyer (Fri Jun 22 2007 - 14:26:00 CDT)
  • John Stone (Fri Jun 22 2007 - 13:03:41 CDT)
  • Petrica GASCA (Fri Jun 22 2007 - 09:28:57 CDT)
• Text/Labels on ray tracing externer render
  • Xiangyun Qiu (Wed Jan 04 2006 - 21:53:13 CST)
• textures in VMD and rayshade scripts
  • Andrew Dalke (Mon Jan 27 1997 - 15:42:15 CST)
• Thank you for you answere the folowing is the .vmdsensor file
  • Christian Wohlschlager (Tue Dec 12 2006 - 06:06:52 CST)
• Thank you!
  • Garf (Fri Oct 29 2004 - 04:13:47 CDT)
  • John Stone (Mon Jun 21 2004 - 13:33:18 CDT)
• thanks
  • John Stone (Fri Sep 03 2004 - 16:26:44 CDT)
  • pinisetty dinesh (Fri Sep 03 2004 - 15:19:23 CDT)
• Thanks :)
  • Garf (Wed Dec 08 2004 - 10:02:08 CST)
• The "gopython" is wrong on the Lunux VMD1.9.1
  • Ajasja LjubetiÄ� (Thu Jun 14 2012 - 08:29:40 CDT)
  • Axel Kohlmeyer (Thu Jun 14 2012 - 07:48:04 CDT)
  • javacfish (Thu Jun 14 2012 - 07:27:59 CDT)
  • Axel Kohlmeyer (Wed Jun 13 2012 - 05:50:48 CDT)
  • javacfish (Wed Jun 13 2012 - 01:21:59 CDT)
• The affordable watch alternative
  • Ariel Mitchell (Fri May 02 2008 - 20:35:12 CDT)
• The charge of glycine mutations in Mutator is not equal to zero
  • Jian Dai (Sun Mar 29 2015 - 07:28:47 CDT)
• the console window is automatically closed without any error messages
  • Axel Kohlmeyer (Thu Sep 06 2007 - 12:50:08 CDT)
  • John Stone (Thu Sep 06 2007 - 12:36:44 CDT)
  • Hu Zhonghan (Thu Sep 06 2007 - 12:31:54 CDT)
  • John Stone (Thu Sep 06 2007 - 10:52:49 CDT)
  • Hu Zhonghan (Thu Sep 06 2007 - 10:05:15 CDT)
• the crystal structure of gold: questions about making the psf and about visualization in VMD
  • Ana Celia Araujo Vila Verde (Tue May 23 2006 - 11:36:54 CDT)
• the crystal structure of gold: questions about making the psf and about visualization in VMD;
  • John Stone (Thu May 25 2006 - 14:48:50 CDT)
• the crystal structure of gold: questions about making the psf and about visualization in VMD; update
  • John Stone (Tue May 23 2006 - 14:56:30 CDT)
  • Ana Celia Araujo Vila Verde (Tue May 23 2006 - 14:47:00 CDT)
• The discreet replica store
  • Greta Bush (Mon May 05 2008 - 01:28:30 CDT)
• The display windows is out of my screen
  • G.H. Zuo (Mon Feb 16 2009 - 00:23:10 CST)
  • John Stone (Sun Feb 15 2009 - 12:57:36 CST)
  • G.H. Zuo (Sun Feb 15 2009 - 00:21:05 CST)
• The dreaded VMD / Mac OS 10.9 problems
  • John Stone (Thu Aug 28 2014 - 13:06:53 CDT)
  • John Grime (Wed Aug 27 2014 - 12:39:50 CDT)
  • John Stone (Wed Aug 27 2014 - 11:37:50 CDT)
  • John Grime (Wed Aug 27 2014 - 10:57:24 CDT)
• The err happens when movie maker Renderer POV-Ray
  • javacfish (Thu Aug 23 2012 - 04:04:15 CDT)
  • Axel Kohlmeyer (Thu Aug 23 2012 - 04:07:30 CDT)
  • Axel Kohlmeyer (Wed Aug 22 2012 - 04:58:30 CDT)
  • javacfish (Wed Aug 22 2012 - 04:01:23 CDT)
• the error of the plugin QMTool in read gaussian output file
  • John Stone (Fri May 18 2007 - 16:56:20 CDT)
  • mashaojienuaa (Fri May 18 2007 - 01:08:09 CDT)
• the exact definition of the keyword "radius" of the atom selection
  • Axel Kohlmeyer (Sat Dec 13 2008 - 16:37:11 CST)
  • Lan Hua (Sat Dec 13 2008 - 14:10:40 CST)
• The Fe2+ parameter for NAMD simulation
  • sunyeping (Tue Sep 15 2020 - 23:08:25 CDT)
• the IR spetra calculation module - from MD trajectory
  • Axel Kohlmeyer (Sat Jan 01 2011 - 16:09:04 CST)
  • Jun Zhao (Sat Jan 01 2011 - 15:12:48 CST)
• The maximal size which can be displayed by VMD?
  • Fred (Rui FENG) (Wed Jul 02 2008 - 20:55:07 CDT)
  • Axel Kohlmeyer (Wed Jul 02 2008 - 16:36:57 CDT)
  • Fred (Rui FENG) (Wed Jul 02 2008 - 16:06:18 CDT)
• The new molecule file browser
  • John Stone (Fri Oct 28 2016 - 21:35:00 CDT)
  • M K (Fri Oct 28 2016 - 20:51:59 CDT)
• the number of hydrogen bonds per residue
  • Fotis Baltoumas (Fri May 04 2018 - 11:16:45 CDT)
  • Qasim Pars (Fri May 04 2018 - 11:09:48 CDT)
  • Qasim Pars (Fri Apr 20 2018 - 08:27:07 CDT)
• The only med1cation for we1ght l0ss that does work
  • Mayra Underwood (Wed Aug 22 2007 - 13:03:07 CDT)
• the patch between segments for multiple chains molecule.
  • Moumita Maiti (Fri Jun 02 2006 - 12:14:58 CDT)
• the patching problem in psfgen
  • Moumita Maiti (Wed Jun 14 2006 - 06:13:20 CDT)
• The pdb format of vmd
  • Andrew Dalke (Thu Jan 22 1998 - 12:02:32 CST)
  • Dayong He (Thu Jan 22 1998 - 11:01:58 CST)
• the python library error in VMD when do IED
  • Shulin Zhuang (Thu Jun 22 2006 - 20:21:03 CDT)
  • John Stone (Thu Jun 22 2006 - 13:51:31 CDT)
  • Shulin Zhuang (Thu Jun 22 2006 - 03:00:53 CDT)
  • Shulin Zhuang (Tue Jun 20 2006 - 01:35:20 CDT)
  • John Stone (Mon Jun 19 2006 - 15:55:13 CDT)
  • Shulin Zhuang (Thu Jun 15 2006 - 20:40:23 CDT)
  • Shulin Zhuang (Thu Jun 15 2006 - 20:55:56 CDT)
• The quality of movie made by VMD
  • John Stone (Wed Jan 21 2015 - 09:28:34 CST)
  • John Stone (Tue Jan 20 2015 - 13:33:28 CST)
  • sunyeping (Sun Jan 18 2015 - 21:45:31 CST)
• The radius of sphere representing an atom shown as vdw
  • Olaf Lenz (Mon Nov 04 2013 - 01:39:53 CST)
  • Axel Kohlmeyer (Mon Nov 04 2013 - 00:50:49 CST)
  • sunyeping (Sun Nov 03 2013 - 19:58:02 CST)
• the representation of within 10 angstrom of a specific point
  • Axel Kohlmeyer (Sun Oct 07 2007 - 23:48:36 CDT)
  • Emilia Wu (Sun Oct 07 2007 - 22:01:08 CDT)
• The safest and most secure Online casino in the world.......
  • Marian Clifton (Wed Apr 09 2008 - 18:55:11 CDT)
• the same old IED problem
  • Cojocaru,Vlad (Sun Dec 04 2005 - 14:01:07 CST)
• the same problem
  • Justin Gullingsrud (Fri Aug 16 2002 - 08:56:28 CDT)
  • Vlad Cojocaru (Fri Aug 16 2002 - 04:33:55 CDT)
• the script do not update the frame for secondary structure analysis
  • poker_at_physics.usyd.edu.au (Mon Feb 11 2008 - 18:51:32 CST)
  • Nuno Loureiro Ferreira (Mon Feb 11 2008 - 03:03:19 CST)
  • OZGE ENGIN (Sun Feb 10 2008 - 04:13:03 CST)
• the script do not update the frame number for secondary structure analysis
  • jrui_at_ci.uc.pt (Mon Feb 11 2008 - 04:55:39 CST)
  • OZGE ENGIN (Mon Feb 11 2008 - 04:01:15 CST)
  • jrui_at_ci.uc.pt (Mon Feb 11 2008 - 03:10:25 CST)
  • OZGE ENGIN (Sun Feb 10 2008 - 05:18:46 CST)
• the scripting interface
  • John Stone (Mon Mar 09 2009 - 09:43:16 CDT)
  • Dawn (Sun Mar 08 2009 - 10:00:19 CDT)
• The spheres become oval, getting close to the screen borders
  • Cosseddu, Salvatore (Sun Feb 05 2012 - 11:43:11 CST)
  • Axel Kohlmeyer (Sun Feb 05 2012 - 11:07:34 CST)
  • John Stone (Sun Feb 05 2012 - 10:44:57 CST)
  • Cosseddu, Salvatore (Sun Feb 05 2012 - 09:53:57 CST)
• the usage of measure bond
  • Josh Vermaas (Mon Dec 29 2014 - 06:14:52 CST)
  • sunyeping (Mon Dec 29 2014 - 01:23:18 CST)
• The usual problem with IED
  • John Stone (Mon Oct 24 2005 - 17:30:48 CDT)
  • John Stone (Mon Oct 17 2005 - 17:13:35 CDT)
  • Simone Lorenzi (Mon Oct 17 2005 - 13:28:43 CDT)
• Theory of backmapping of CGTools
  • John Stone (Tue Mar 26 2013 - 10:01:37 CDT)
  • WuChaofu (Mon Mar 25 2013 - 19:04:21 CDT)
  • Kirby Vandivort (Mon Mar 25 2013 - 15:37:55 CDT)
  • WuChaofu (Mon Mar 25 2013 - 07:06:07 CDT)
• Thickness of bilayer script
  • Ban Arn (Fri Apr 20 2012 - 05:30:38 CDT)
  • Andrés Morales (Thu Apr 19 2012 - 20:58:35 CDT)
• Thinkpad X120e with Linux and VMD
  • John Stone (Fri Oct 28 2011 - 14:28:21 CDT)
  • Gianluca Interlandi (Thu Oct 20 2011 - 19:48:32 CDT)
• Thiol on gold
  • Axel Kohlmeyer (Fri May 08 2009 - 10:17:49 CDT)
  • KIRTANA S (Thu May 07 2009 - 23:57:48 CDT)
• third time..can someone help!!
  • Peter Freddolino (Wed Jul 12 2006 - 01:57:31 CDT)
  • Peter Freddolino (Tue Jul 11 2006 - 23:45:30 CDT)
  • hl332_at_drexel.edu (Tue Jul 11 2006 - 22:09:41 CDT)
• Three dcdplugin.c questions, and the DCD binary format.
  • Charles McAnany (Thu Jun 01 2017 - 12:39:48 CDT)
• Tiled display setup
  • John Stone (Fri May 03 2013 - 15:43:02 CDT)
  • John Hodrien (Tue Apr 30 2013 - 03:08:06 CDT)
• Tilting helix in VMD
  • Jessica Sarver (Wed Aug 05 2015 - 14:11:16 CDT)
• time correlation function
  • John Stone (Thu Mar 27 2008 - 17:08:08 CDT)
  • David A. Case (Thu Mar 27 2008 - 16:35:11 CDT)
  • Axel Kohlmeyer (Tue Mar 25 2008 - 22:56:27 CDT)
  • Krishnan, Marimuthu (Tue Mar 25 2008 - 22:44:40 CDT)
• time dependent plot for stride output file
  • Santanu Santra (Tue Sep 28 2021 - 00:37:42 CDT)
  • Santanu Santra (Sat Sep 25 2021 - 09:22:02 CDT)
• time line
  • Barry Isralewitz (Wed Mar 16 2011 - 15:03:45 CDT)
  • leila karami (Sat Mar 12 2011 - 03:19:52 CST)
  • ABEL Stephane 175950 (Tue Nov 30 2010 - 08:55:05 CST)
• Time series for SASA calculation:
  • Axel Kohlmeyer (Wed Sep 26 2007 - 20:01:35 CDT)
  • PARMINDER MANKOO (Wed Sep 26 2007 - 13:40:12 CDT)
• time step
  • nmichaud_at_jhu.edu (Fri Oct 05 2007 - 07:23:38 CDT)
  • John Stone (Thu Oct 04 2007 - 23:39:34 CDT)
  • Alessio Alexiadis (Wed Oct 03 2007 - 07:44:13 CDT)
• time-averaged RMSD per residue
  • Roman Petrenko (Sun Jul 26 2009 - 05:39:19 CDT)
  • Roman Petrenko (Fri Jul 24 2009 - 11:15:02 CDT)
  • Axel Kohlmeyer (Fri Jul 24 2009 - 09:19:52 CDT)
  • Roman Petrenko (Fri Jul 24 2009 - 09:00:08 CDT)
  • Dawn (Fri Jul 24 2009 - 08:06:08 CDT)
• timeline - write canvas to ps
  • John Stone (Mon Jan 30 2006 - 16:28:10 CST)
  • Nuno R. L. Ferreira (Sat Jan 28 2006 - 07:54:14 CST)
• Timeline / Sequence View not functional
  • John Stone (Mon Mar 13 2017 - 10:29:36 CDT)
  • Vlad Cojocaru (Mon Mar 13 2017 - 10:17:11 CDT)
  • John Stone (Mon Mar 13 2017 - 09:56:09 CDT)
  • Vlad Cojocaru (Mon Mar 13 2017 - 09:16:25 CDT)
  • Caio S. Souza (Mon Mar 13 2017 - 09:16:40 CDT)
  • Vlad Cojocaru (Mon Mar 13 2017 - 09:17:52 CDT)
  • Vlad Cojocaru (Mon Mar 13 2017 - 08:11:17 CDT)
• Timeline error
  • Sebastián Gutiérrez (Tue Aug 07 2018 - 15:01:11 CDT)
  • Jordi Bujons (Tue Jul 24 2018 - 12:13:01 CDT)
• Timeline plugin
  • Ada Zhan (Thu Aug 11 2011 - 19:12:01 CDT)
• Timeline SASA
  • Lizelle Lubbe (Thu Nov 23 2017 - 06:21:07 CST)
  • Lizelle Lubbe (Thu Nov 23 2017 - 04:48:39 CST)
• Timeline viewer
  • Axel Kohlmeyer (Sat Dec 01 2007 - 18:33:58 CST)
  • L. Michel Espinoza-Fonseca (Sat Dec 01 2007 - 08:05:39 CST)
  • Neelanjana Sengupta (Fri Nov 30 2007 - 19:59:40 CST)
  • Neelanjana Sengupta (Fri Nov 30 2007 - 19:29:49 CST)
  • Axel Kohlmeyer (Fri Nov 30 2007 - 15:31:56 CST)
  • Neelanjana Sengupta (Fri Nov 30 2007 - 09:50:33 CST)
• Timeline/H-Bond broken OS X
  • CHARLES MCCALLUM (Fri May 06 2022 - 12:16:06 CDT)
  • John Stone (Fri May 06 2022 - 11:28:08 CDT)
  • CHARLES MCCALLUM (Fri May 06 2022 - 11:25:52 CDT)
  • John Stone (Fri May 06 2022 - 00:41:10 CDT)
  • CHARLES MCCALLUM (Tue Mar 29 2022 - 19:03:08 CDT)
• Timer in VMD
  • Lili Peng (Tue Apr 15 2008 - 21:52:22 CDT)
  • Axel Kohlmeyer (Tue Apr 15 2008 - 18:58:46 CDT)
  • Lili Peng (Tue Apr 15 2008 - 16:59:28 CDT)
• Timestep
  • Axel Kohlmeyer (Mon Feb 13 2012 - 16:57:22 CST)
  • Molybdos Kirkimpolakis (Mon Feb 13 2012 - 15:53:15 CST)
• Tinker trajectory file
  • John Stone (Mon Apr 16 2007 - 18:27:52 CDT)
  • Esther Brugger (Mon Apr 16 2007 - 16:47:00 CDT)
• tinkerxyz
  • Joshua D. Moore (Sat Aug 29 2009 - 02:26:29 CDT)
  • Axel Kohlmeyer (Tue Aug 25 2009 - 21:21:28 CDT)
  • Urahata (Tue Aug 25 2009 - 20:58:41 CDT)
  • Mark M Huntress (Tue Aug 25 2009 - 19:21:48 CDT)
• Tip to start VMD with external terminal
  • Gianluca Interlandi (Thu Dec 08 2011 - 16:06:27 CST)
• TIP3 by TIP4
  • Alexis Salas (Tue Aug 03 2004 - 13:57:40 CDT)
• TIP4P and CHARMM27
  • Francesco Pietra (Thu Nov 26 2015 - 15:50:52 CST)
• TIP4P Water box
  • 김민재 (Tue Feb 19 2019 - 19:51:03 CST)
• TIP5P
  • jestin mandumpal (Sun Aug 26 2007 - 23:41:03 CDT)
• tips for an annoying aliasing task?
  • Salvatore Mario Cosseddu (Fri May 27 2011 - 04:20:55 CDT)
  • Cosseddu, Salvatore (Thu May 26 2011 - 15:51:49 CDT)
  • Edward Lyman (Thu May 26 2011 - 10:33:27 CDT)
• TIS SARL promotions AVRIL N°1
  • TIS SARL (Fri Apr 13 2001 - 01:09:39 CDT)
• Tk Console dsspcmbi file
  • Isuru Herath (Sat Jan 02 2021 - 15:38:04 CST)
• Tk console issues
  • John Stone (Wed Jan 17 2007 - 15:59:16 CST)
  • Eric Peterson (Wed Jan 17 2007 - 15:48:58 CST)
• Tk console not responding to keystrokes
  • Manasa Yadavalli (Wed Aug 25 2021 - 15:46:18 CDT)
• TK console problem
  • J. Matthew Franklin (Wed Sep 14 2011 - 20:38:38 CDT)
  • John Stone (Sun Sep 11 2011 - 12:06:56 CDT)
  • J. Matthew Franklin (Sat Sep 10 2011 - 17:46:38 CDT)
  • John Stone (Wed Sep 07 2011 - 10:50:41 CDT)
  • J. Matthew Franklin (Tue Sep 06 2011 - 22:40:26 CDT)
• Tk script
  • PaweÅ‚ Wolski (Wed Oct 01 2014 - 02:26:59 CDT)
  • Josh Vermaas (Tue Sep 30 2014 - 14:22:56 CDT)
  • Maxim Belkin (Tue Sep 30 2014 - 13:39:15 CDT)
  • Axel Kohlmeyer (Tue Sep 30 2014 - 13:45:03 CDT)
  • PaweÅ‚ Wolski (Tue Sep 30 2014 - 13:08:50 CDT)
  • Axel Kohlmeyer (Tue Sep 30 2014 - 11:08:27 CDT)
  • Maxim Belkin (Tue Sep 30 2014 - 10:11:23 CDT)
  • PaweÅ‚ Wolski (Tue Sep 30 2014 - 09:54:26 CDT)
• TK script problem
  • Justin Gullingsrud (Fri Jun 07 2002 - 09:32:02 CDT)
  • Wuwei Liang (Fri Jun 07 2002 - 12:11:13 CDT)
• Tk startup error in X forwarding
  • John Stone (Thu Feb 06 2020 - 10:28:29 CST)
  • George Mogami (Wed Feb 05 2020 - 23:00:10 CST)
  • John Stone (Wed Feb 05 2020 - 15:04:07 CST)
  • George Mogami (Tue Feb 04 2020 - 19:44:13 CST)
• Tk-console
  • John Stone (Sat Apr 06 2019 - 23:01:51 CDT)
  • Anjali Patel (Sat Apr 06 2019 - 03:45:37 CDT)
  • Anjali Patel (Sat Apr 06 2019 - 02:54:34 CDT)
• tkcon behavior in OS X / selection Q
  • Gumbart, JC (Tue Feb 08 2022 - 17:32:58 CST)
  • John Stone (Tue Feb 08 2022 - 14:17:35 CST)
  • John Stone (Tue Feb 08 2022 - 14:09:13 CST)
  • Cesar Millan (Tue Feb 08 2022 - 14:10:54 CST)
  • Giacomo Fiorin (Tue Feb 08 2022 - 13:45:56 CST)
  • Mike McCallum (Tue Feb 08 2022 - 13:18:54 CST)
  • Giacomo Fiorin (Tue Feb 08 2022 - 13:11:58 CST)
  • Mike McCallum (Tue Feb 08 2022 - 11:57:59 CST)
• tkcon cursors not working
  • Ruggero Cortini (Tue Jan 31 2017 - 09:41:50 CST)
  • Ruggero Cortini (Wed May 25 2016 - 03:36:47 CDT)
• TkCon History
  • John Stone (Mon Sep 05 2005 - 13:38:22 CDT)
  • John Stone (Mon Sep 05 2005 - 13:36:28 CDT)
  • q=E2=BA=E9=C3=F7?= (Mon Sep 05 2005 - 10:50:55 CDT)
  • bybaker_at_itsa.ucsf.edu (Mon Sep 05 2005 - 03:20:56 CDT)
• Tkcon on at startup
  • Qmer_AN?= (Tue May 17 2011 - 11:00:19 CDT)
  • John Stone (Tue May 17 2011 - 11:07:55 CDT)
• TkCon problem
  • John Stone (Mon Jul 16 2007 - 15:39:23 CDT)
  • luca.dallaglio2_at_studio.unibo.it (Mon Jul 16 2007 - 02:15:29 CDT)
• tkcon problem with my vmd
  • John Stone (Mon Sep 27 2004 - 13:21:24 CDT)
  • dong (Mon Sep 27 2004 - 12:07:50 CDT)
• tkCon window - how to make font bigger?
  • John Stone (Wed May 12 2004 - 14:24:24 CDT)
  • Olya Kravchenko (Tue May 11 2004 - 14:16:29 CDT)
• TkCon, an alternative VMD console...
  • John Stone (Mon Feb 19 2001 - 15:07:16 CST)
• TkConsol
  • mohamed marzouk (Wed Jul 17 2024 - 21:12:51 CDT)
  • Isralewitz, Barry (Wed Jul 17 2024 - 18:46:04 CDT)
  • mohamed marzouk (Wed Jul 17 2024 - 15:02:37 CDT)
• tkconsole and intel macs
  • Dan Gordon (Tue May 29 2007 - 19:21:03 CDT)
  • Dan Gordon (Sun May 27 2007 - 20:32:11 CDT)
• TkConsole functions
  • Fatemesadat Emami (Tue Jun 26 2012 - 14:38:16 CDT)
• TkConsole not working
  • Ziemys, Arturas (Thu Jul 23 2009 - 14:56:57 CDT)
  • John Stone (Thu Jul 23 2009 - 14:52:24 CDT)
  • Ziemys, Arturas (Thu Jul 23 2009 - 14:45:20 CDT)
• tkinter load problem in VMD
  • Gianluca Interlandi (Sun Nov 06 2011 - 00:13:41 CDT)
  • John Stone (Sun Nov 06 2011 - 00:24:39 CDT)
  • Gianluca Interlandi (Sun Nov 06 2011 - 00:04:42 CDT)
• TLS handshake failed
  • John Stone (Tue Jun 28 2016 - 10:04:27 CDT)
  • Gianluca Interlandi (Mon Jun 27 2016 - 20:45:45 CDT)
• TMD in NAMD: cannot reach target
  • lily jin (Thu Nov 01 2007 - 13:13:23 CDT)
• TNG Plugin
  • John Stone (Mon Oct 03 2016 - 15:52:01 CDT)
  • Niels Müller (Thu Sep 29 2016 - 03:49:51 CDT)
• to block the information appearing during the run
  • Ajasja LjubetiÄ� (Thu Mar 17 2011 - 08:16:14 CDT)
  • Ramya Narasimhan (Thu Mar 17 2011 - 06:14:24 CDT)
• to change color of Sn atom
  • Beyza Bilgiç (Wed May 11 2011 - 04:33:51 CDT)
  • Beyza Bilgiç (Wed May 11 2011 - 04:28:07 CDT)
• to create simply a box of water molecules.
  • Margaret Shun Cheung (Sat Jun 24 2006 - 19:46:11 CDT)
• To create Tetramer
  • John Stone (Tue Feb 05 2008 - 09:55:43 CST)
  • Irene Newhouse (Mon Feb 04 2008 - 17:56:41 CST)
  • Swarna Patra (Mon Feb 04 2008 - 16:42:52 CST)
• To delete some atoms via VMD
  • Majid Shahbabaei (Tue Feb 10 2015 - 03:26:48 CST)
• To display only certain regions of the .dx map in VMD
  • Shirley Li (Fri Aug 11 2006 - 09:26:11 CDT)
  • Axel Kohlmeyer (Mon Aug 07 2006 - 13:35:43 CDT)
  • Shirley Li (Mon Aug 07 2006 - 12:01:05 CDT)
• To find the residues on each side of the protein
  • ramya narasimhan (Wed Dec 03 2008 - 22:36:40 CST)
  • Axel Kohlmeyer (Wed Dec 03 2008 - 05:17:48 CST)
  • ramya narasimhan (Wed Dec 03 2008 - 02:42:33 CST)
• to get angle from matrix of rotation around an axis
  • Yinglong Miao (Wed Feb 25 2009 - 15:45:53 CST)
  • John Stone (Wed Feb 25 2009 - 15:37:47 CST)
  • Yinglong Miao (Wed Feb 25 2009 - 14:55:27 CST)
• to get SURFACE CHARGE DISTRIBUTION of protein
  • John Stone (Tue Aug 31 2004 - 15:35:15 CDT)
  • Shirley Li (Tue Aug 24 2004 - 13:12:51 CDT)
• to load multiple trajectory files
  • John Stone (Tue Aug 10 2004 - 13:27:16 CDT)
  • Shirley Li (Tue Aug 10 2004 - 11:27:01 CDT)
  • John Stone (Tue Aug 10 2004 - 10:52:44 CDT)
  • Shirley Li (Tue Aug 10 2004 - 10:46:27 CDT)
• to load multiple trajectory files/append dcd to a PSF file?
  • Shirley Li (Tue Aug 10 2004 - 13:50:12 CDT)
• To many bonds error.
  • Kooser, Ara S (Tue Mar 23 2004 - 13:45:15 CST)
• to set VMDFORCECPUCOUNT
  • upayan baul (Sat Sep 21 2013 - 00:27:22 CDT)
  • Gianluca Interlandi (Fri Sep 20 2013 - 12:50:16 CDT)
  • Christopher MacDermaid (Fri Sep 20 2013 - 11:08:56 CDT)
  • upayan baul (Fri Sep 20 2013 - 09:04:30 CDT)
• To the developers: Get current zoom value (scale)
  • Mayne, Christopher G (Fri Aug 08 2014 - 10:10:43 CDT)
  • Mayne, Christopher G (Fri Aug 08 2014 - 09:15:50 CDT)
  • Jérôme Hénin (Fri Aug 08 2014 - 03:49:23 CDT)
  • Norman Geist (Fri Aug 08 2014 - 01:27:45 CDT)
• To the developers: TCL implementation of autofit zoom
  • John Stone (Fri Aug 08 2014 - 10:58:51 CDT)
  • Jérôme Hénin (Fri Aug 08 2014 - 09:05:20 CDT)
  • Josh Vermaas (Fri Aug 08 2014 - 08:41:56 CDT)
  • Norman Geist (Fri Aug 08 2014 - 07:11:32 CDT)
• to use tcl script in command line
  • Chris Harrison (Thu Dec 08 2011 - 08:30:37 CST)
  • Anthony Rey (Thu Dec 08 2011 - 07:38:04 CST)
  • Joshua Adelman (Thu Dec 08 2011 - 07:32:08 CST)
  • Sangita Kachhap (Thu Dec 08 2011 - 04:14:59 CST)
• too large an area/lipid in POPE bilayers using membrane plugin
  • Himanshu Khandelia (Mon Feb 05 2007 - 11:50:04 CST)
• too many bonds
  • Axel Kohlmeyer (Sun Apr 05 2009 - 08:57:59 CDT)
  • JT (Sun Apr 05 2009 - 03:06:17 CDT)
  • Crowley, Michael (Sun Apr 05 2009 - 01:27:03 CDT)
• Too many nested evaluations
  • John Stone (Mon Dec 20 2021 - 17:07:26 CST)
  • Hamish Swanson (Mon Dec 20 2021 - 03:58:35 CST)
• top2psf
  • John Stone (Mon Apr 19 2004 - 11:51:14 CDT)
  • davide\.ruffoni (Mon Apr 19 2004 - 09:29:55 CDT)
• top2psf - bridging_waters.tcl script
  • John Stone (Fri Dec 03 2010 - 12:08:59 CST)
  • leila karami (Tue Nov 30 2010 - 00:41:58 CST)
  • John Stone (Mon Nov 29 2010 - 10:32:03 CST)
  • leila karami (Sat Nov 27 2010 - 06:15:37 CST)
• top2psf script
  • John Stone (Tue Oct 03 2006 - 23:42:25 CDT)
  • olga hrydziuszko (Mon Oct 02 2006 - 09:08:29 CDT)
• top2psf.tcl
  • Axel Kohlmeyer (Tue Jun 15 2010 - 10:31:42 CDT)
  • Rabab Toubar (Tue Jun 15 2010 - 10:14:14 CDT)
  • Axel Kohlmeyer (Tue Jun 15 2010 - 08:59:42 CDT)
  • Rabab Toubar (Tue Jun 15 2010 - 08:49:31 CDT)
  • Axel Kohlmeyer (Tue Jun 15 2010 - 08:29:32 CDT)
  • Rabab Toubar (Tue Jun 15 2010 - 08:21:19 CDT)
  • Axel Kohlmeyer (Sun Jun 13 2010 - 07:19:12 CDT)
  • Rabab Toubar (Sun Jun 13 2010 - 05:59:28 CDT)
• top_all22_prot.inp & par_all22_prot.inp
  • Axel Kohlmeyer (Sun Feb 14 2010 - 13:06:20 CST)
  • geetha9999_at_aol.com (Sun Feb 14 2010 - 09:49:24 CST)
• Topo file
  • Axel Kohlmeyer (Tue Feb 07 2017 - 11:14:14 CST)
  • John Stone (Tue Feb 07 2017 - 10:57:52 CST)
  • Axel Kohlmeyer (Tue Feb 07 2017 - 10:45:30 CST)
  • John Stone (Tue Feb 07 2017 - 10:13:35 CST)
  • Statics Eng (Tue Feb 07 2017 - 06:39:33 CST)
• topo guessatom
  • Ben Hanson (Tue Feb 10 2015 - 09:25:05 CST)
  • Axel Kohlmeyer (Tue Feb 10 2015 - 09:15:46 CST)
  • Ben Hanson (Tue Feb 10 2015 - 08:22:02 CST)
  • Axel Kohlmeyer (Mon Feb 09 2015 - 13:25:36 CST)
  • Axel Kohlmeyer (Mon Feb 09 2015 - 13:07:10 CST)
  • Axel Kohlmeyer (Mon Feb 09 2015 - 12:37:07 CST)
  • Ben Hanson (Mon Feb 09 2015 - 12:03:14 CST)
• topo tool guess bond algorithm
  • omid gh (Wed Sep 16 2020 - 04:34:47 CDT)
  • Axel Kohlmeyer (Tue Sep 15 2020 - 19:07:28 CDT)
  • Josh Vermaas (Tue Sep 15 2020 - 15:12:00 CDT)
  • omid gh (Tue Sep 15 2020 - 15:22:15 CDT)
  • omid gh (Tue Sep 15 2020 - 13:39:34 CDT)
• Topo tools error in dihedral guess
  • اسحاق خداپرست سیاهمزگی (Wed Feb 20 2019 - 15:49:15 CST)
  • Vermaas, Joshua (Wed Feb 20 2019 - 13:50:35 CST)
  • اسحاق خداپرست سیاهمزگی (Wed Feb 20 2019 - 02:45:56 CST)
  • Axel Kohlmeyer (Wed Feb 20 2019 - 06:12:00 CST)
  • اسحاق خداپرست سیاهمزگی (Wed Feb 20 2019 - 02:33:51 CST)
  • اسحاق خداپرست سیاهمزگی (Tue Feb 19 2019 - 03:19:51 CST)
  • Axel Kohlmeyer (Tue Feb 19 2019 - 01:59:57 CST)
  • Axel Kohlmeyer (Mon Feb 18 2019 - 13:14:00 CST)
  • Axel Kohlmeyer (Mon Feb 18 2019 - 08:46:13 CST)
  • اسحاق خداپرست سیاهمزگی (Mon Feb 18 2019 - 07:06:42 CST)
• Topo Tools for triclinic system
  • Axel Kohlmeyer (Wed Jul 23 2014 - 07:04:10 CDT)
  • karthik kumar (Wed Jul 23 2014 - 03:16:25 CDT)
• Topo tools: can't use non-numeric string as operand of "+"
  • Axel Kohlmeyer (Fri Mar 22 2013 - 09:35:19 CDT)
  • Ivan Moncayo (Fri Mar 22 2013 - 08:36:15 CDT)
• topo writelammpsdata: size limitation?
  • Laurent Joly (Sun Mar 23 2014 - 18:11:29 CDT)
• topology and parameter files ?
  • Harit Jani (Thu Dec 11 2003 - 18:09:52 CST)
• topology and parameter files for H2 and O2
  • flavio seixas (Wed Dec 07 2011 - 13:49:51 CST)
  • Axel Kohlmeyer (Tue Dec 06 2011 - 07:46:33 CST)
  • Yungok Ihm (Tue Dec 06 2011 - 03:52:31 CST)
• Topology file
  • Axel Kohlmeyer (Fri Apr 04 2008 - 11:52:27 CDT)
  • Alejandro Ortega (Fri Apr 04 2008 - 11:24:14 CDT)
• topology file for metal in the protein
  • Ana Celia Vila Verde (Fri Aug 10 2012 - 02:30:51 CDT)
  • aramice Malkhasian (Thu Aug 09 2012 - 10:12:43 CDT)
• topology file for polystyrene
  • Mihaela Drenscko (Thu Nov 06 2014 - 19:10:52 CST)
• topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp
  • Peter Freddolino (Tue Sep 25 2007 - 21:05:12 CDT)
  • Dhiraj Srivastava (Tue Sep 25 2007 - 19:00:30 CDT)
  • L. Michel Espinoza-Fonseca (Tue Sep 25 2007 - 19:33:46 CDT)
  • Dhiraj Srivastava (Tue Sep 25 2007 - 19:33:14 CDT)
• topology files L/D form
  • Peter Freddolino (Mon Apr 14 2008 - 13:13:10 CDT)
  • Jorgen Simonsen (Mon Apr 14 2008 - 12:55:11 CDT)
  • Peter Freddolino (Mon Apr 14 2008 - 10:26:40 CDT)
  • Jorgen Simonsen (Mon Apr 14 2008 - 04:50:08 CDT)
• Topology for carbon nanotube compatible to Amber
  • Nathan Kern (Wed Feb 10 2021 - 09:11:50 CST)
  • Raman Preet Singh (Wed Feb 10 2021 - 06:34:27 CST)
  • Shilpa Gupta (Wed Feb 10 2021 - 02:56:34 CST)
• Topology for drugs to do MD after docking
  • Nikhil Maroli (Thu Oct 22 2015 - 12:59:02 CDT)
  • Axel Kohlmeyer (Thu Oct 22 2015 - 12:39:04 CDT)
  • Nikhil Maroli (Thu Oct 22 2015 - 12:15:49 CDT)
  • Richard Wood (Thu Oct 22 2015 - 11:08:44 CDT)
  • Mayne, Christopher G (Thu Oct 22 2015 - 09:39:02 CDT)
  • Mayne, Christopher G (Wed Oct 21 2015 - 14:44:18 CDT)
  • Nikhil Maroli (Wed Oct 21 2015 - 11:40:04 CDT)
• topotool lammps data_file viewing
  • Amir Suhail (Sun Sep 06 2020 - 06:50:38 CDT)
  • omid gh (Sun Sep 06 2020 - 06:20:02 CDT)
• topotools
  • kirtana S (Sat Nov 12 2011 - 02:01:26 CST)
  • Axel Kohlmeyer (Fri Nov 11 2011 - 10:14:23 CST)
  • kirtana S (Fri Nov 11 2011 - 09:51:48 CST)
  • Axel Kohlmeyer (Fri Nov 11 2011 - 07:27:27 CST)
  • kirtana S (Thu Nov 10 2011 - 23:49:47 CST)
  • Axel Kohlmeyer (Wed Oct 12 2011 - 16:46:59 CDT)
  • kirtana S (Wed Oct 12 2011 - 15:45:13 CDT)
  • Axel Kohlmeyer (Tue Jun 15 2010 - 12:00:00 CDT)
  • Rabab Toubar (Tue Jun 15 2010 - 11:57:12 CDT)
  • Rabab Toubar (Tue Jun 15 2010 - 11:22:55 CDT)
  • Axel Kohlmeyer (Tue Jun 15 2010 - 11:31:40 CDT)
  • Chenchen Wang (Wed Apr 28 2010 - 15:15:38 CDT)
  • Axel Kohlmeyer (Wed Apr 28 2010 - 15:30:47 CDT)
  • Axel Kohlmeyer (Wed Apr 28 2010 - 10:37:36 CDT)
  • Axel Kohlmeyer (Wed Apr 28 2010 - 04:46:11 CDT)
  • Chenchen Wang (Wed Apr 28 2010 - 00:19:21 CDT)
• Topotools "guessangles" not assigning angles
  • utku.ozkan_at_bilkent.edu.tr (Wed Nov 09 2022 - 04:29:16 CST)
  • Axel Kohlmeyer (Wed Nov 09 2022 - 03:07:42 CST)
  • utku.ozkan_at_bilkent.edu.tr (Wed Nov 09 2022 - 00:05:50 CST)
• Topotools - limit to size of system it can be used for?
  • Michael Doig (Wed Feb 15 2012 - 04:21:28 CST)
  • Yamada, Masako (GE Global Research) (Wed Feb 08 2012 - 10:37:29 CST)
  • John Stone (Wed Feb 08 2012 - 10:06:45 CST)
  • Michael Doig (Tue Jan 24 2012 - 10:13:24 CST)
  • Michael Doig (Tue Jan 24 2012 - 09:55:23 CST)
  • John Stone (Tue Jan 24 2012 - 10:09:45 CST)
  • John Stone (Tue Jan 24 2012 - 10:15:38 CST)
  • Axel Kohlmeyer (Tue Jan 24 2012 - 08:46:25 CST)
  • Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
  • Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
  • Michael Doig (Tue Jan 24 2012 - 05:48:04 CST)
• Topotools - silicon (110) creation
  • Axel Kohlmeyer (Sat Mar 30 2019 - 06:05:07 CDT)
  • Sina Zarepakzad (Sat Mar 30 2019 - 05:10:34 CDT)
  • Axel Kohlmeyer (Thu Mar 28 2019 - 11:56:12 CDT)
  • Sina Zarepakzad (Thu Mar 28 2019 - 11:18:43 CDT)
• topotools addbond and retypeimpropers commands
  • Hugo Santos Silva (Sat Feb 21 2015 - 15:25:49 CST)
  • Axel Kohlmeyer (Thu Feb 19 2015 - 22:20:36 CST)
  • Axel Kohlmeyer (Thu Feb 19 2015 - 21:47:12 CST)
  • Hugo Santos Silva (Thu Feb 19 2015 - 19:22:44 CST)
• TopoTools and box information in LAMMPS data
  • Axel Kohlmeyer (Mon Mar 09 2015 - 03:22:53 CDT)
  • Ondrej Marsalek (Mon Mar 09 2015 - 02:43:29 CDT)
  • Axel Kohlmeyer (Mon Mar 09 2015 - 01:12:52 CDT)
  • Ondrej Marsalek (Sun Mar 08 2015 - 23:28:28 CDT)
• topotools and Partial charges
  • Axel Kohlmeyer (Wed Jun 09 2010 - 11:49:55 CDT)
  • Michael Doig (Wed Jun 09 2010 - 05:25:25 CDT)
• Topotools guessing angle and bond topology from CONNECT info in PDB files
  • Vaidyanathan Sethuraman (Thu Nov 23 2017 - 02:15:32 CST)
  • Axel Kohlmeyer (Wed Nov 22 2017 - 13:25:20 CST)
  • Yesica Pena (Wed Nov 22 2017 - 11:50:03 CST)
  • Axel Kohlmeyer (Wed Nov 22 2017 - 00:41:16 CST)
  • Vaidyanathan Sethuraman (Tue Nov 21 2017 - 23:40:33 CST)
• topotools in place of patching
  • Francesco Pietra (Fri Oct 05 2018 - 12:00:09 CDT)
  • Brian Radak (Thu Oct 04 2018 - 15:32:20 CDT)
  • Vermaas, Joshua (Thu Oct 04 2018 - 14:21:40 CDT)
  • Francesco Pietra (Thu Oct 04 2018 - 09:07:48 CDT)
• topotools lammps style sphere - write molecules
  • MD Simulation (Mon Jun 14 2021 - 10:57:10 CDT)
  • Axel Kohlmeyer (Mon Jun 14 2021 - 10:55:13 CDT)
  • Axel Kohlmeyer (Mon Jun 14 2021 - 10:59:40 CDT)
  • Axel Kohlmeyer (Mon Jun 14 2021 - 10:52:29 CDT)
  • MD Simulation (Mon Jun 14 2021 - 10:54:16 CDT)
  • MD Simulation (Mon Jun 14 2021 - 10:05:35 CDT)
• Topotools not changing psf
  • Axel Kohlmeyer (Thu Dec 04 2014 - 14:53:13 CST)
  • Morgan, Brittany (Thu Dec 04 2014 - 14:08:26 CST)
  • Josh Vermaas (Thu Dec 04 2014 - 13:12:20 CST)
  • Axel Kohlmeyer (Thu Dec 04 2014 - 12:45:12 CST)
  • Morgan, Brittany (Thu Dec 04 2014 - 12:00:21 CST)
• Topotools plugin: guessimpropers?
  • MyLinkka (Fri Jan 15 2010 - 23:25:21 CST)
  • Axel Kohlmeyer (Fri Jan 15 2010 - 22:36:14 CST)
  • MyLinkka (Fri Jan 15 2010 - 21:54:19 CST)
  • Axel Kohlmeyer (Fri Jan 15 2010 - 18:12:12 CST)
  • MyLinkka (Fri Jan 15 2010 - 17:53:39 CST)
  • Axel Kohlmeyer (Fri Jan 15 2010 - 09:10:27 CST)
  • MyLinkka (Fri Jan 15 2010 - 06:05:53 CST)
  • Axel Kohlmeyer (Wed Jan 13 2010 - 11:08:36 CST)
  • MyLinkka (Wed Jan 13 2010 - 10:41:18 CST)
  • Axel Kohlmeyer (Wed Jan 13 2010 - 09:19:16 CST)
  • MyLinkka (Wed Jan 13 2010 - 08:28:28 CST)
• topotools question
  • Vikas Varshney (Fri Oct 18 2013 - 08:53:23 CDT)
  • Axel Kohlmeyer (Thu Oct 17 2013 - 16:57:57 CDT)
  • Vikas Varshney (Thu Oct 17 2013 - 15:34:42 CDT)
• topotools question regarding ordering of bonds, angles, etc in output.
  • Axel Kohlmeyer (Fri Oct 03 2014 - 14:32:48 CDT)
  • Dave Schall (Fri Oct 03 2014 - 13:25:27 CDT)
  • Axel Kohlmeyer (Fri Oct 03 2014 - 13:16:37 CDT)
  • Dave Schall (Fri Oct 03 2014 - 12:51:22 CDT)
  • Axel Kohlmeyer (Fri Oct 03 2014 - 12:44:53 CDT)
  • Josh Vermaas (Fri Oct 03 2014 - 12:21:34 CDT)
  • Dave Schall (Fri Oct 03 2014 - 11:08:27 CDT)
• topotools readlammpsdata redefining xyz coordinates?
  • matt wessel (Wed Jan 04 2017 - 18:05:20 CST)
  • Axel Kohlmeyer (Wed Jan 04 2017 - 17:49:44 CST)
  • matt wessel (Wed Jan 04 2017 - 16:32:11 CST)
• topotools readvarxyz
  • Axel Kohlmeyer (Mon Sep 19 2011 - 07:03:25 CDT)
  • puroorava annapaneni (Sun Sep 18 2011 - 12:22:58 CDT)
• topotools writelammps data
  • Axel Kohlmeyer (Tue Apr 10 2012 - 18:15:16 CDT)
  • winardi, erik (Tue Apr 10 2012 - 17:24:48 CDT)
• topotools {.top} for Gromacs {.tpr} generation
  • Axel Kohlmeyer (Tue Jun 07 2011 - 15:24:30 CDT)
  • Lalit (Tue Jun 07 2011 - 15:12:29 CDT)
  • Axel Kohlmeyer (Mon Jun 06 2011 - 19:14:57 CDT)
  • Lalit (Mon Jun 06 2011 - 18:19:21 CDT)
  • Axel Kohlmeyer (Mon Jun 06 2011 - 18:26:46 CDT)
• topotools/topogromacs
  • Francesco Pietra (Wed Jun 13 2018 - 09:30:15 CDT)
  • Vermaas, Joshua (Wed Jun 13 2018 - 09:10:27 CDT)
  • Francesco Pietra (Wed Jun 13 2018 - 08:42:25 CDT)
  • Vermaas, Joshua (Wed Jun 13 2018 - 04:53:57 CDT)
  • John Stone (Mon Jun 11 2018 - 15:53:42 CDT)
  • Francesco Pietra (Mon Jun 11 2018 - 15:30:51 CDT)
• Topotools1.0
  • Axel Kohlmeyer (Sat Mar 13 2010 - 14:03:22 CST)
  • muniyamuthu.raviprasad_at_ndsu.edu (Sat Mar 13 2010 - 13:04:38 CST)
• Topotools: Lammps data file for protein
  • Axel Kohlmeyer (Thu Dec 18 2014 - 12:05:48 CST)
  • Hemant Gangwar (Thu Dec 18 2014 - 11:35:03 CST)
• topotools: write a particular selection into a lammps data file
  • M K (Sun Jul 24 2016 - 23:08:25 CDT)
• torsion angle
  • Axel Kohlmeyer (Mon Sep 06 2004 - 09:28:52 CDT)
  • bora erdemli (Mon Sep 06 2004 - 06:18:22 CDT)
• Torsional Angles
  • Ahmet Bakan (Mon May 31 2004 - 15:54:52 CDT)
  • John Stone (Mon May 31 2004 - 12:44:40 CDT)
  • John Stone (Mon May 31 2004 - 12:40:22 CDT)
  • Ahmet Bakan (Sun May 30 2004 - 19:41:49 CDT)
  • Ahmet Bakan (Wed May 26 2004 - 13:52:53 CDT)
• torsions = NaN ?
  • John Stone (Tue Dec 21 2004 - 10:14:12 CST)
  • nordgren_at_sas.upenn.edu (Mon Dec 20 2004 - 18:23:07 CST)
• Total charge from *.psf alone
  • Francesco Pietra (Thu Dec 21 2023 - 15:07:35 CST)
• Total charge query?
  • Blake Charlebois (Fri May 13 2005 - 17:28:41 CDT)
  • Chang, Christopher (Fri May 13 2005 - 13:32:20 CDT)
• Total Dipole Moment
  • Axel Kohlmeyer (Tue Jun 28 2011 - 20:02:59 CDT)
  • Chathurika Abeyrathne (Tue Jun 28 2011 - 20:17:04 CDT)
  • Chathurika Abeyrathne (Tue Jun 28 2011 - 20:08:17 CDT)
  • Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
  • Axel Kohlmeyer (Tue Jun 28 2011 - 20:11:47 CDT)
  • Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
  • Chathurika Abeyrathne (Tue Jun 28 2011 - 04:48:54 CDT)
• Total H-bond occupancy analysis
  • Neena Susan Eappen (Thu Sep 28 2023 - 14:34:14 CDT)
  • Vermaas, Josh (Tue Sep 26 2023 - 08:06:02 CDT)
  • PaweÅ‚ KÄ™dzierski (Tue Sep 26 2023 - 05:32:52 CDT)
  • Neena Susan Eappen (Mon Sep 25 2023 - 14:14:33 CDT)
• Total list of Tcl features
  • Axel Kohlmeyer (Sat Jun 07 2008 - 09:41:05 CDT)
  • Axel Kohlmeyer (Sat Jun 07 2008 - 10:21:27 CDT)
  • Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 10:31:31 CDT)
  • John Stone (Sat Jun 07 2008 - 00:35:26 CDT)
  • Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 01:14:37 CDT)
  • Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 00:15:05 CDT)
• total number of donors and acceptors
  • Roman Petrenko (Wed Nov 26 2008 - 18:27:16 CST)
• Total volume of ligand calculation in vmd
  • mish (Tue Mar 17 2015 - 11:10:28 CDT)
• TP2 Phosphotyrosine Patch Issue
  • David E. Heppner (Wed May 04 2016 - 05:02:00 CDT)
  • Josh Vermaas (Tue May 03 2016 - 16:29:00 CDT)
  • David E. Heppner (Tue May 03 2016 - 15:29:22 CDT)
• TR : MolID error using fftk with VMD 1.94a49 on windows 10
  • ABEL Stephane (Tue Jul 13 2021 - 08:51:45 CDT)
• TR:
  • DUCHER Roland (Thu Aug 06 2020 - 03:03:12 CDT)
• TR: VMD atomselect with cartesian reference
  • Wang Yi (Wed May 30 2012 - 08:56:42 CDT)
  • peter.schmidtke_at_fr.netgrs.com (Wed May 30 2012 - 02:00:24 CDT)
  • PaweÅ‚ KÄ™dzierski (Thu May 24 2012 - 12:45:08 CDT)
  • Axel Kohlmeyer (Thu May 24 2012 - 09:13:04 CDT)
  • peter.schmidtke_at_fr.netgrs.com (Thu May 24 2012 - 08:16:55 CDT)
• trace cartoon etc displaying incompletely after alignment
  • Yi Shang (Fri Oct 02 2009 - 10:39:21 CDT)
  • mirandaisbest (Fri Oct 02 2009 - 10:18:56 CDT)
  • Rahul Mahajan (Tue Sep 29 2009 - 21:23:53 CDT)
• Trace Frame in "Draw Multiple Frames"-Representations
  • John Stone (Thu Nov 14 2013 - 08:40:26 CST)
  • Norman Geist (Thu Nov 14 2013 - 04:17:53 CST)
• trace P atoms in RNA
  • Yongmei Wang (Wed Apr 16 2003 - 17:08:15 CDT)
• trace the distance between center of mass of one certain residue and the other
  • John Stone (Wed Jun 24 2009 - 15:34:05 CDT)
  • Naiyin Yu (Wed Jun 24 2009 - 14:59:14 CDT)
• trace to newcartoon inconsistent display problem
  • John Stone (Fri Oct 06 2006 - 18:06:51 CDT)
  • Ravinder Abrol (Fri Oct 06 2006 - 17:57:57 CDT)
  • John Stone (Fri Oct 06 2006 - 14:37:55 CDT)
  • Ravinder Abrol (Thu Oct 05 2006 - 15:20:28 CDT)
• Tracing distances among atoms in a MD simulation
  • Jérôme Hénin (Thu Jun 09 2011 - 02:25:23 CDT)
  • DCM CA (Wed Jun 08 2011 - 20:57:17 CDT)
• Tracing on color by properties
  • Tristan Croll (Wed Nov 04 2015 - 03:51:42 CST)
  • Tristan Croll (Wed Nov 04 2015 - 02:54:49 CST)
• Tracing VMD variables
  • Olaf Lenz (Wed Feb 28 2007 - 00:30:35 CST)
  • John Stone (Tue Feb 27 2007 - 13:31:21 CST)
  • Olaf Lenz (Mon Feb 26 2007 - 08:10:03 CST)
• Track H-bonds at a site in a trajectory
  • Vermaas, Joshua (Wed Apr 24 2019 - 15:39:47 CDT)
  • Neena Susan Eappen (Wed Apr 24 2019 - 12:44:39 CDT)
• tracker coordinate calibration
  • John Stone (Sat Jul 20 2002 - 00:58:51 CDT)
  • Will Sheffler (Fri Jul 19 2002 - 23:43:53 CDT)
• Tracking atoms automatically
  • Nanako Takahashi (Tue Oct 06 2009 - 13:03:16 CDT)
  • Axel Kohlmeyer (Mon Oct 05 2009 - 13:24:17 CDT)
  • Nanako Takahashi (Mon Oct 05 2009 - 11:52:37 CDT)
• Tracking bond length changes in a simulation
  • John Stone (Tue Jun 19 2007 - 10:53:00 CDT)
  • Adilah Hussien (Tue Jun 19 2007 - 04:33:22 CDT)
• Tracking devices and VMD
  • John Stone (Mon Jun 17 2002 - 11:38:55 CDT)
  • Brendan O'Malley (Mon Jun 17 2002 - 04:15:07 CDT)
• Tracking system configuration
  • Luis Rosales (Fri Feb 18 2005 - 20:21:43 CST)
• Tracking system configuration???
  • John Stone (Thu Feb 17 2005 - 16:13:26 CST)
  • Luis Rosales (Mon Feb 14 2005 - 21:36:03 CST)
• traj not visualized but pdb is visualized
  • Lambert van Eijck (Thu Jun 07 2007 - 09:55:57 CDT)
  • Axel Kohlmeyer (Thu Jun 07 2007 - 08:29:33 CDT)
  • Lambert van Eijck (Thu Jun 07 2007 - 04:44:49 CDT)
• trajector@VMD
  • John Stone (Fri Feb 17 2012 - 10:17:12 CST)
  • Axel Kohlmeyer (Fri Feb 17 2012 - 09:38:26 CST)
  • Turgay Cakmak (Fri Feb 17 2012 - 08:54:15 CST)
• trajectory
  • John Stone (Mon Feb 06 2006 - 12:44:13 CST)
  • bizoniusz_at_o2.pl (Mon Feb 06 2006 - 12:02:27 CST)
• trajectory analysis
  • Barry Bickmore (Wed Sep 23 2009 - 11:39:08 CDT)
  • John Stone (Tue Jul 04 2006 - 22:56:28 CDT)
  • Javad Azadi (Tue Jul 04 2006 - 11:14:36 CDT)
• Trajectory analysis without loading all frames
  • Pratik Narain Srivastava (Sun Nov 22 2020 - 02:07:30 CST)
  • Peter Freddolino (Thu Nov 19 2020 - 15:14:08 CST)
  • Ashar Malik (Thu Nov 19 2020 - 09:29:43 CST)
  • Smith, Harper E. (Thu Nov 19 2020 - 09:02:54 CST)
  • Raman Preet Singh (Thu Nov 19 2020 - 08:35:23 CST)
• trajectory animation usign PBC
  • Justin Gullingsrud (Wed Aug 06 2003 - 18:04:39 CDT)
  • Ioana Cozmuta (Wed Aug 06 2003 - 17:33:45 CDT)
• trajectory conversion: dcd to trr to xtc
  • John Stone (Tue Feb 26 2013 - 08:30:15 CST)
  • manali_at_bioinfo.net.in (Tue Feb 26 2013 - 03:59:34 CST)
• trajectory file format
  • John Stone (Tue Jul 25 2006 - 12:39:40 CDT)
  • Jonathan Ashar (Tue Jul 25 2006 - 12:31:00 CDT)
• trajectory file with xyz
  • John Stone (Fri Oct 22 2004 - 10:47:36 CDT)
  • mbb (Wed Oct 20 2004 - 15:56:26 CDT)
• Trajectory Files
  • John Stone (Mon Aug 09 2004 - 10:08:36 CDT)
  • Axel Kohlmeyer (Sun Aug 08 2004 - 13:36:35 CDT)
  • Travis DePuy (Fri Aug 06 2004 - 18:03:32 CDT)
• Trajectory from multiple .gro files
  • Tristan Croll (Mon May 12 2014 - 23:56:08 CDT)
  • Josh Vermaas (Mon May 12 2014 - 09:40:55 CDT)
  • John Brown (Sat May 10 2014 - 06:49:42 CDT)
• trajectory from separate frames
  • John Stone (Mon Nov 20 2006 - 20:57:38 CST)
  • Narender Singh Maan (Mon Nov 20 2006 - 17:14:22 CST)
• trajectory generation using gaussian cube files
  • Axel Kohlmeyer (Mon Apr 11 2011 - 16:47:48 CDT)
  • Vamsee Voora (Mon Apr 11 2011 - 15:53:33 CDT)
• trajectory loading
  • ioana_at_pegasus.arc.nasa.gov (Tue Nov 02 2004 - 17:42:20 CST)
  • John Stone (Tue Nov 02 2004 - 09:31:44 CST)
  • ioana_at_pegasus.arc.nasa.gov (Mon Nov 01 2004 - 22:07:43 CST)
• trajectory movie
  • Ioana Cozmuta (Mon Mar 03 2003 - 17:11:02 CST)
• trajectory of water within 5 A of protein
  • maria goranovic (Thu May 12 2011 - 02:31:16 CDT)
  • Emmanuel Baribefe Naziga (Tue May 10 2011 - 10:26:52 CDT)
  • Eduard Schreiner (Tue May 10 2011 - 09:51:13 CDT)
  • Neelanjana Sengupta (Tue May 10 2011 - 07:03:55 CDT)
  • Aaron Oakley (Tue May 10 2011 - 05:47:47 CDT)
  • Jernej Zidar (Tue May 10 2011 - 03:09:38 CDT)
  • maria goranovic (Tue May 10 2011 - 02:27:58 CDT)
• trajectory path script
  • Katherine Parra (Thu Feb 05 2009 - 11:00:12 CST)
  • Axel Kohlmeyer (Thu Feb 05 2009 - 11:39:06 CST)
• Trajectory smoothing
  • Axel Kohlmeyer (Mon Jul 13 2020 - 22:41:55 CDT)
  • Maximilian Ebert (Mon Jul 13 2020 - 22:08:50 CDT)
  • Axel Kohlmeyer (Mon Jul 13 2020 - 22:06:24 CDT)
  • Maximilian Ebert (Mon Jul 13 2020 - 20:53:09 CDT)
• Trajectory Smoothing and length of hydrogen bonds
  • Bennion, Brian (Thu May 11 2023 - 16:52:32 CDT)
  • Gabby Leonard (Thu May 11 2023 - 16:27:33 CDT)
  • Vermaas, Josh (Thu May 11 2023 - 16:13:12 CDT)
  • Gabby Leonard (Thu May 11 2023 - 14:54:23 CDT)
• Trajectory Smoothing Window Zize with implicit solvent
  • Fabian Gonzalez (Tue Oct 31 2017 - 09:50:54 CDT)
• trajectory smoothing with periodic images in VMD
  • Chris Neale (Wed Dec 21 2016 - 12:52:39 CST)
• trajectory sort by RMSD or other
  • Axel Kohlmeyer (Tue Jul 20 2010 - 17:17:33 CDT)
  • Thomas C. Bishop (Tue Jul 20 2010 - 16:51:17 CDT)
  • Axel Kohlmeyer (Tue Jul 20 2010 - 13:04:57 CDT)
  • John Stone (Tue Jul 20 2010 - 12:44:38 CDT)
  • Thomas C. Bishop (Tue Jul 20 2010 - 12:17:14 CDT)
• Trajectory title
  • Axel Kohlmeyer (Wed Apr 16 2008 - 11:06:05 CDT)
  • Alessandro Cembran (Wed Apr 16 2008 - 07:53:47 CDT)
• trajectory to xyz file.
  • Axel Kohlmeyer (Mon Jul 07 2008 - 15:11:30 CDT)
  • Christopher Gillespie (Mon Jul 07 2008 - 14:44:12 CDT)
  • Katherine Parra (Mon Jul 07 2008 - 13:16:30 CDT)
• trajectory/movie
  • Ioana Cozmuta (Mon Mar 03 2003 - 17:13:55 CST)
• trajectory2
  • John Stone (Mon Feb 06 2006 - 18:08:01 CST)
  • bizoniusz_at_o2.pl (Mon Feb 06 2006 - 14:55:20 CST)
• trajectory_path
  • John Stone (Fri May 30 2003 - 10:19:55 CDT)
  • Tatyana Kuznetsova (Fri May 30 2003 - 09:25:51 CDT)
• trajectory_path.tcl queries
  • Axel Kohlmeyer (Sun Mar 07 2010 - 10:53:39 CST)
  • Francesco Pietra (Sun Mar 07 2010 - 02:55:03 CST)
• trans routine
  • John Stone (Tue Jan 27 2009 - 22:29:29 CST)
  • Edward Lyman (Fri Jan 16 2009 - 12:49:24 CST)
• Transform pdb files in psf files using VMD
  • Peter Freddolino (Thu Mar 01 2007 - 15:05:51 CST)
  • Peter Freddolino (Thu Mar 01 2007 - 09:27:28 CST)
  • Inês Sousa (Thu Mar 01 2007 - 04:35:44 CST)
• Transform structure to
  • Vermaas, Joshua (Tue Oct 08 2019 - 11:29:15 CDT)
  • Bakary N'tji Diallo (Tue Oct 08 2019 - 01:20:35 CDT)
• transformation matrix
  • Thomas Evangelidis (Thu Jun 18 2009 - 15:34:51 CDT)
  • John Stone (Thu Jun 18 2009 - 15:39:12 CDT)
  • Thomas Evangelidis (Thu Jun 18 2009 - 15:36:13 CDT)
  • JC Gumbart (Thu Jun 18 2009 - 15:15:34 CDT)
  • Thomas Evangelidis (Thu Jun 18 2009 - 02:55:52 CDT)
• Translate
  • Peter Freddolino (Wed May 13 2009 - 22:41:34 CDT)
  • Andres Morales N (Wed May 13 2009 - 22:25:22 CDT)
• translating a molecule
  • John Stone (Mon Aug 09 2004 - 10:11:45 CDT)
  • Marcela Madrid (Sat Aug 07 2004 - 15:00:31 CDT)
• Translating an atom along a specific direction and saving the pdb files
  • Axel Kohlmeyer (Tue Oct 20 2009 - 10:38:17 CDT)
  • John Stone (Tue Oct 20 2009 - 09:39:48 CDT)
  • priyodorshi satpati (Tue Oct 20 2009 - 04:08:12 CDT)
• Translating protein along one coordinate
  • John Stone (Thu Dec 09 2010 - 16:25:47 CST)
  • Sweta Iyer (Tue Dec 07 2010 - 23:18:41 CST)
• Translation Script
  • Roshan Shrestha (Thu Nov 12 2020 - 01:10:58 CST)
  • Peter Freddolino (Thu Nov 12 2020 - 00:38:10 CST)
  • Demy Hernandez (Wed Nov 11 2020 - 19:24:47 CST)
  • Peter Freddolino (Wed Nov 11 2020 - 19:09:58 CST)
  • Peter Freddolino (Wed Nov 11 2020 - 11:17:19 CST)
  • Demy Hernandez (Tue Nov 10 2020 - 10:55:28 CST)
• translation/transformation
  • Roman Petrenko (Sun Jul 27 2008 - 04:09:35 CDT)
  • Schreiner Eduard (Sun Jul 27 2008 - 02:16:58 CDT)
  • Schreiner Eduard (Sun Jul 27 2008 - 01:52:20 CDT)
  • Roman Petrenko (Sat Jul 26 2008 - 23:31:36 CDT)
• translations with fixed and unfixed molecules
  • Andrew Dalke (Thu Apr 15 1999 - 23:18:33 CDT)
  • Justin Gullingsrud (Tue Apr 13 1999 - 13:37:00 CDT)
  • Charles Schwieters (Mon Apr 12 1999 - 16:27:28 CDT)
• Translocate molecule within a box
  • harish vashisth (Wed Nov 23 2011 - 21:43:13 CST)
  • rainy908 (Wed Nov 23 2011 - 19:51:03 CST)
• transoffset command
  • Nuno R. L. Ferreira (Thu Jan 12 2006 - 12:05:55 CST)
  • Nuno R. L. Ferreira (Thu Jan 12 2006 - 10:49:05 CST)
• transparency
  • John Stone (Mon May 13 2002 - 13:25:59 CDT)
  • Laurence F. Wood (Mon May 13 2002 - 13:09:19 CDT)
  • John Stone (Mon May 13 2002 - 11:42:13 CDT)
  • Todd J. Furlong (Mon May 13 2002 - 11:20:57 CDT)
  • John Stone (Fri May 10 2002 - 12:57:52 CDT)
  • tripp_at_fis.unam.mx (Fri May 10 2002 - 11:46:01 CDT)
• Transparency rendering
  • John Stone (Fri Jun 25 2004 - 18:03:15 CDT)
  • Simon Latapie (Fri Jun 25 2004 - 03:28:22 CDT)
• Transparency rendering by Tachyon
  • John Stone (Wed Oct 15 2014 - 09:17:07 CDT)
  • Kevin C Chan (Wed Oct 15 2014 - 08:39:39 CDT)
  • Kevin C Chan (Mon Oct 13 2014 - 08:48:21 CDT)
  • John Stone (Mon Oct 13 2014 - 08:59:44 CDT)
  • Kevin C Chan (Sun Oct 12 2014 - 23:39:05 CDT)
• Transparency settings
  • John Stone (Fri Jun 12 2009 - 10:32:15 CDT)
  • Bjoern Olausson (Thu Jun 11 2009 - 06:09:15 CDT)
  • John Stone (Wed Jun 10 2009 - 10:57:58 CDT)
  • Bjoern Olausson (Wed Jun 10 2009 - 10:29:08 CDT)
  • Eric H. Lee (Wed Jun 10 2009 - 09:23:55 CDT)
  • Axel Kohlmeyer (Wed Jun 10 2009 - 09:38:57 CDT)
  • Bjoern Olausson (Wed Jun 10 2009 - 09:13:13 CDT)
• transparent background
  • John Stone (Mon Feb 23 2009 - 15:01:32 CST)
  • FX (Fri Feb 20 2009 - 18:52:47 CST)
  • John Stone (Fri Feb 20 2009 - 18:14:32 CST)
  • Axel Kohlmeyer (Fri Feb 20 2009 - 14:39:17 CST)
  • James Rustad (Fri Feb 20 2009 - 13:55:55 CST)
• transparent background in vmd
  • Axel Kohlmeyer (Fri Feb 23 2007 - 10:49:56 CST)
  • Omololu (Fri Feb 23 2007 - 10:11:24 CST)
• Transparent graphics
  • John Stone (Fri Sep 18 1998 - 11:17:16 CDT)
  • Andrew Dalke (Fri Sep 18 1998 - 12:32:30 CDT)
  • Siegmar Kardinal (Sun Sep 13 1998 - 11:00:44 CDT)
• Transparent image render problem after vmd 1.9 version
  • Bongkeun Kim (Wed Apr 06 2011 - 11:51:43 CDT)
  • John Stone (Wed Apr 06 2011 - 09:55:32 CDT)
  • Bongkeun Kim (Wed Apr 06 2011 - 01:22:21 CDT)
• transparent material: set different opacity
  • Josh Vermaas (Fri Mar 08 2013 - 09:18:28 CST)
  • andrea spitaleri (Fri Mar 08 2013 - 09:19:38 CST)
  • Axel Kohlmeyer (Fri Mar 08 2013 - 09:06:06 CST)
  • andrea spitaleri (Fri Mar 08 2013 - 08:19:14 CST)
• transparent option
  • sollebac (Fri Mar 29 2013 - 12:23:14 CDT)
  • John Stone (Fri Mar 29 2013 - 09:48:35 CDT)
  • sollebac (Fri Mar 29 2013 - 02:55:20 CDT)
• transparent or translucent backgrond for images
  • Axel Kohlmeyer (Sun Nov 30 2008 - 05:37:01 CST)
  • Neelanjana Sengupta (Sat Nov 29 2008 - 06:18:46 CST)
• Transparent QuickSurf
  • ali.kamrani91_at_REMOVE_yahoo.com (Tue May 26 2020 - 12:29:29 CDT)
• Trasperent images
  • John Stone (Wed Mar 12 2003 - 13:53:32 CST)
  • Sanjeev B.S. (Mon Mar 10 2003 - 22:18:43 CST)
• travelling...
  • John Stone (Fri May 25 2007 - 11:00:52 CDT)
• Triclinic boxes in VMD using the LAMMPS file format
  • Taco de Wolff (Thu Mar 10 2011 - 10:46:09 CST)
  • Axel Kohlmeyer (Thu Mar 10 2011 - 09:44:13 CST)
  • Axel Kohlmeyer (Thu Mar 10 2011 - 08:18:03 CST)
  • Olaf Lenz (Thu Mar 10 2011 - 07:44:14 CST)
  • Taco de Wolff (Thu Mar 10 2011 - 06:36:22 CST)
• trig functions in vmd
  • Samuel Flores (Sat Jul 30 2005 - 20:08:16 CDT)
• trio and osX
  • John Stone (Thu Feb 03 2005 - 18:22:19 CST)
  • vuissoz jean-marc (Thu Jan 20 2005 - 14:23:43 CST)
• trio program
  • Brian Bennion (Tue Sep 16 2003 - 10:17:13 CDT)
  • Nguyen Hoang Phuong (Tue Sep 16 2003 - 02:22:36 CDT)
  • Brian Bennion (Fri Sep 12 2003 - 11:00:17 CDT)
  • John Stone (Fri Sep 12 2003 - 10:12:57 CDT)
  • Nguyen Hoang Phuong (Fri Sep 12 2003 - 08:19:38 CDT)
• triple bond parametrization
  • Mayne, Christopher G (Tue Feb 11 2014 - 14:06:30 CST)
  • Tim Lo (Fri Feb 07 2014 - 19:30:54 CST)
  • Mayne, Christopher G (Fri Feb 07 2014 - 17:33:11 CST)
  • Mayne, Christopher G (Sat Feb 01 2014 - 22:44:14 CST)
  • Mayne, Christopher G (Sat Feb 01 2014 - 20:00:03 CST)
  • Mayne, Christopher G (Sat Feb 01 2014 - 19:02:18 CST)
  • Tim Lo (Fri Jan 31 2014 - 20:11:55 CST)
• Tripos mol2 file in VMD
  • Peter Freddolino (Mon Nov 05 2007 - 15:02:36 CST)
  • FyD (Mon Nov 05 2007 - 14:57:03 CST)
  • FyD (Mon Nov 05 2007 - 15:14:20 CST)
  • Peter Freddolino (Mon Nov 05 2007 - 14:59:39 CST)
• Trouble building VMD 1.8.7 on Mac OS X
  • Joshua Anderson (Thu Feb 04 2010 - 10:04:53 CST)
  • John Stone (Thu Feb 04 2010 - 10:06:33 CST)
  • John Stone (Thu Feb 04 2010 - 10:14:13 CST)
  • Joshua Anderson (Thu Feb 04 2010 - 07:26:10 CST)
  • John Stone (Wed Feb 03 2010 - 15:55:51 CST)
  • Joshua Anderson (Wed Feb 03 2010 - 15:39:52 CST)
• Trouble compiling from source - Mac OS X
  • Reid Van Lehn (Sun Jun 06 2010 - 14:53:58 CDT)
  • Reid Van Lehn (Fri Jun 04 2010 - 23:36:13 CDT)
  • Reid Van Lehn (Fri Jun 04 2010 - 23:11:38 CDT)
  • John Stone (Fri Jun 04 2010 - 17:08:33 CDT)
  • Axel Kohlmeyer (Fri Jun 04 2010 - 13:11:08 CDT)
  • Reid Van Lehn (Fri Jun 04 2010 - 11:36:54 CDT)
• trouble compiling/setting up VMD
  • Cook, Rich (Mon Aug 26 2013 - 20:06:20 CDT)
  • Axel Kohlmeyer (Mon Aug 26 2013 - 19:57:36 CDT)
  • Cook, Rich (Mon Aug 26 2013 - 18:44:26 CDT)
• Trouble in installing VMD
  • John Stone (Fri Apr 17 2020 - 23:06:51 CDT)
  • Gardezi,Shahbaz (Fri Apr 17 2020 - 22:11:55 CDT)
• Trouble installing VMD
  • Axel Kohlmeyer (Tue Jan 10 2006 - 23:37:14 CST)
  • Jon Savian (Tue Jan 10 2006 - 17:54:34 CST)
• Trouble installing VMD on LINUX machine
  • John Stone (Thu Sep 18 2008 - 11:06:45 CDT)
  • Gregor Kladnik (Thu Sep 18 2008 - 06:43:14 CDT)
• Trouble installing VMD on LINUX machine SOLVED
  • Gregor Kladnik (Thu Sep 18 2008 - 11:18:40 CDT)
• Trouble launching VMD 1.9.2 from the dock in Mac OS X el capitan
  • John Stone (Fri Apr 01 2016 - 00:46:01 CDT)
  • Peter Monson (Thu Mar 03 2016 - 15:10:33 CST)
• Trouble launching VMD in Apple M1
  • Neelanjana Sengupta (Fri Mar 19 2021 - 21:51:52 CDT)
  • John Stone (Wed Mar 17 2021 - 00:35:42 CDT)
  • Neelanjana Sengupta (Fri Mar 12 2021 - 21:54:49 CST)
• trouble loading dcd files
  • AMIT PALIWAL (Sun May 09 2004 - 09:48:37 CDT)
  • AMIT PALIWAL (Sun May 09 2004 - 09:53:07 CDT)
  • John Stone (Sun May 09 2004 - 08:24:25 CDT)
  • Olga Kravchenko (Sun May 09 2004 - 03:30:27 CDT)
  • AMIT PALIWAL (Sat May 08 2004 - 23:43:13 CDT)
• Trouble Recognizing Peptide Sequence
  • Shyam Saladi (Fri May 16 2014 - 15:47:59 CDT)
  • John Stone (Fri May 16 2014 - 14:36:08 CDT)
  • Shyam Saladi (Wed May 07 2014 - 00:45:46 CDT)
• Trouble rendering tranparent atoms with Tachyon
  • Ajasja LjubetiÄ� (Sat Jan 29 2011 - 06:42:06 CST)
  • John Stone (Fri Jan 28 2011 - 10:14:26 CST)
  • Axel Kohlmeyer (Fri Jan 28 2011 - 09:56:06 CST)
  • Ajasja Ljubetiè (Fri Jan 28 2011 - 09:06:11 CST)
• trouble saving the state of two proteins
  • Peter Freddolino (Fri Jun 29 2007 - 15:31:51 CDT)
  • Peter Freddolino (Fri Jun 29 2007 - 12:48:33 CDT)
  • Charlotte J Siska (Fri Jun 29 2007 - 12:45:27 CDT)
• Trouble updating frames in script
  • Axel Kohlmeyer (Tue Aug 19 2008 - 15:14:42 CDT)
  • Emily Moore (Tue Aug 19 2008 - 14:23:29 CDT)
  • Axel Kohlmeyer (Tue Aug 19 2008 - 13:06:44 CDT)
  • Emily Moore (Tue Aug 19 2008 - 12:21:11 CDT)
• trouble with autopsf
  • Peter Freddolino (Tue Jan 17 2006 - 09:57:46 CST)
  • Lin (Tue Jan 17 2006 - 09:54:05 CST)
  • Charles McCallum (Tue Oct 25 2005 - 08:19:38 CDT)
  • John Stone (Mon Oct 24 2005 - 17:19:33 CDT)
  • Armen Nalian (Mon Oct 24 2005 - 16:56:41 CDT)
  • John Stone (Mon Oct 24 2005 - 13:11:39 CDT)
  • Armen Nalian (Sun Oct 23 2005 - 23:36:09 CDT)
  • Peter Freddolino (Sat Oct 22 2005 - 17:35:21 CDT)
  • rob zehr (Sat Oct 22 2005 - 08:27:12 CDT)
• trouble with measure hbonds
  • Eduard Schreiner (Tue Oct 05 2010 - 11:33:03 CDT)
  • charbott_at_gmail.com (Tue Oct 05 2010 - 10:35:14 CDT)
  • Pat Yee (Mon Oct 04 2010 - 17:09:42 CDT)
  • Axel Kohlmeyer (Mon Oct 04 2010 - 16:02:13 CDT)
  • Eduard Schreiner (Mon Oct 04 2010 - 15:53:17 CDT)
  • Charlotte Siska (Mon Oct 04 2010 - 15:01:36 CDT)
• trouble with multiseq
  • John Stone (Wed Mar 17 2021 - 00:54:12 CDT)
  • Hedlund, Erik (Tue Mar 02 2021 - 10:34:01 CST)
• trouble with running vmd after installation , machine gets hung
  • shiladitya_at_jncasr.ac.in (Mon Sep 22 2008 - 18:45:30 CDT)
  • Axel Kohlmeyer (Sun Sep 21 2008 - 03:13:41 CDT)
  • John Stone (Sun Sep 21 2008 - 02:36:43 CDT)
  • shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
  • Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
  • shiladitya_at_jncasr.ac.in (Fri Sep 19 2008 - 04:30:01 CDT)
• Trouble with tcl script (puts command)
  • John Stone (Thu Sep 05 2002 - 14:00:11 CDT)
  • J. Rui Rodrigues (Thu Sep 05 2002 - 13:42:20 CDT)
• Trouble with the mergepdbs.tcl script
  • Axel Kohlmeyer (Wed Jul 03 2013 - 10:46:47 CDT)
  • Hunter Brown (Wed Jul 03 2013 - 09:56:51 CDT)
• Trouble with visual representations while loading a dcd.
  • Maxim Belkin (Thu Jun 05 2014 - 11:55:56 CDT)
  • Diego Granados (Thu Jun 05 2014 - 11:34:52 CDT)
• troubles in setting pbc on m1 mac version
  • Fujie Tang (Thu Jul 15 2021 - 16:27:57 CDT)
  • Axel Kohlmeyer (Thu Jul 15 2021 - 09:50:28 CDT)
  • Fujie Tang (Thu Jul 15 2021 - 08:53:54 CDT)
  • Fujie Tang (Wed Jul 14 2021 - 12:01:27 CDT)
• troubles with openGL
  • Stefano Guglielmo (Thu Jun 23 2016 - 07:08:09 CDT)
• Troubles with VMD 1.9.2 recognizing TclTk 8.6
  • John Stone (Mon Jan 12 2015 - 10:30:50 CST)
  • St. John, Alexander V. (MU-Student) (Wed Jan 07 2015 - 16:34:53 CST)
  • John Stone (Wed Jan 07 2015 - 16:46:53 CST)
• trr generated by catdcd
  • Stefano Guglielmo (Tue Feb 21 2017 - 15:36:03 CST)
  • Vermaas, Joshua (Tue Feb 21 2017 - 11:23:33 CST)
  • Stefano Guglielmo (Mon Feb 20 2017 - 19:25:11 CST)
  • Axel Kohlmeyer (Sun Jun 05 2016 - 07:06:53 CDT)
  • Stefano Guglielmo (Sun Jun 05 2016 - 04:17:51 CDT)
• truncated atom types after merge
  • Josh Vermaas (Mon Nov 24 2014 - 16:47:27 CST)
  • Mihaela Drenscko (Sun Nov 23 2014 - 17:06:34 CST)
• truncated atom types with fftk v.1.93
  • JC Gumbart (Mon Aug 27 2018 - 15:55:20 CDT)
  • ABEL Stephane (Mon Aug 27 2018 - 08:48:47 CDT)
• truncated atom types with fftk v.1.93 - Resolved
  • JC Gumbart (Mon Aug 27 2018 - 15:59:23 CDT)
  • ABEL Stephane (Mon Aug 27 2018 - 10:45:37 CDT)
• Truncated octahedron Box
  • Jérôme Hénin (Wed Jan 12 2011 - 10:59:34 CST)
  • francesco oteri (Wed Jan 12 2011 - 04:43:17 CST)
• truncated octahedron box in namd
  • carles ferrer (Tue Aug 26 2003 - 17:58:28 CDT)
• truncated octahedron box in namd (fwd)
  • John Stone (Mon Aug 25 2003 - 10:24:18 CDT)
• Truncated Octahedron for VMD and NAMD simulation
  • Yinglong Miao (Thu May 15 2008 - 14:31:48 CDT)
• truncated octahedron from AMBER
  • John Stone (Tue Apr 25 2006 - 13:51:41 CDT)
  • Kenley Barrett (Tue Apr 25 2006 - 13:05:06 CDT)
• Trying to Build a Membrane w/conical pore out of PET (polyethylene terephthalate)
  • Peter Freddolino (Mon Dec 25 2006 - 11:38:07 CST)
  • wolfinbm_at_uci.edu (Sun Dec 24 2006 - 14:35:08 CST)
  • wolfinbm_at_uci.edu (Sun Dec 24 2006 - 13:07:28 CST)
  • Peter Freddolino (Sat Dec 23 2006 - 01:02:19 CST)
  • wolfinbm_at_uci.edu (Fri Dec 22 2006 - 14:29:56 CST)
  • wolfinbm_at_uci.edu (Fri Dec 22 2006 - 14:05:36 CST)
  • Peter Freddolino (Fri Dec 22 2006 - 13:19:24 CST)
  • wolfinbm_at_uci.edu (Fri Dec 22 2006 - 12:48:36 CST)
• trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0
  • maria goranovic (Mon Jun 06 2011 - 07:36:35 CDT)
  • John Stone (Wed May 25 2011 - 10:18:12 CDT)
  • Ajasja LjubetiÄ� (Wed May 25 2011 - 05:57:10 CDT)
  • maria goranovic (Wed May 25 2011 - 06:05:44 CDT)
  • Axel Kohlmeyer (Wed May 25 2011 - 05:35:42 CDT)
  • maria goranovic (Wed May 25 2011 - 04:51:02 CDT)
  • Axel Kohlmeyer (Tue May 24 2011 - 14:08:26 CDT)
  • Ajasja LjubetiÄ� (Tue May 24 2011 - 12:22:00 CDT)
  • Axel Kohlmeyer (Tue May 24 2011 - 12:14:39 CDT)
  • John Stone (Tue May 24 2011 - 12:13:07 CDT)
  • maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
  • Ajasja LjubetiÄ� (Tue May 24 2011 - 09:48:15 CDT)
  • maria goranovic (Tue May 24 2011 - 08:39:08 CDT)
• Trying to get Crystal Eyes to work on VMD with Twin View confirguation
  • Kim Taylor (Wed Sep 07 2005 - 19:35:24 CDT)
• Trying to get Crystal Eyes to work on VMD with Twin View confirguation...Fixed myself
  • Kim Taylor (Wed Sep 07 2005 - 19:57:15 CDT)
• Trying to get VMD to run locally while logged into a remote machine
  • Daniel Beaman (Mon Nov 26 2007 - 20:09:30 CST)
  • Daniel Beaman (Mon Nov 26 2007 - 19:30:32 CST)
  • John Stone (Mon Nov 26 2007 - 19:00:24 CST)
  • Daniel Beaman (Mon Nov 26 2007 - 17:27:48 CST)
  • Axel Kohlmeyer (Wed Nov 21 2007 - 16:35:50 CST)
  • John Stone (Tue Nov 20 2007 - 17:24:36 CST)
  • Daniel Beaman (Tue Nov 20 2007 - 16:04:57 CST)
• Trying to Use AutoPSF on Hundreds of pdb Files
  • Eric A Brenner (Mon Dec 12 2016 - 11:01:25 CST)
  • Peter Freddolino (Sun Dec 11 2016 - 14:32:00 CST)
  • Eric A Brenner (Fri Dec 09 2016 - 18:40:15 CST)
  • Vermaas, Joshua (Fri Dec 09 2016 - 13:30:38 CST)
  • Peter Freddolino (Thu Dec 08 2016 - 21:00:34 CST)
  • Eric A Brenner (Thu Dec 08 2016 - 20:14:13 CST)
  • Peter Freddolino (Thu Dec 08 2016 - 19:58:04 CST)
  • Eric A Brenner (Thu Dec 08 2016 - 17:27:58 CST)
• TR : Plot a time line in the movie made with VMD
  • ABEL Stephane 175950 (Thu Dec 02 2010 - 06:48:01 CST)
• Tube representation of alpha carbons
  • Matthew Geballe (Wed Dec 08 2004 - 13:57:09 CST)
  • Justin Gullingsrud (Wed Dec 08 2004 - 12:22:50 CST)
  • Marc Q. Ma (Wed Dec 08 2004 - 07:44:55 CST)
  • Andrew Dalke (Wed Dec 08 2004 - 01:53:05 CST)
  • Matthew Thomas Geballe (Tue Dec 07 2004 - 20:43:11 CST)
  • Andrew Dalke (Tue Dec 07 2004 - 19:46:58 CST)
  • Matthew Geballe (Tue Dec 07 2004 - 14:29:43 CST)
• tubes
  • John Stone (Tue Jun 03 2003 - 13:41:23 CDT)
• Turn off initial VMD animation and "menu tkcon on" problem
  • Ajasja LjubetiÄ� (Fri Apr 09 2010 - 09:12:05 CDT)
  • Axel Kohlmeyer (Fri Apr 09 2010 - 08:37:36 CDT)
  • Ajasja LjubetiÄ� (Fri Apr 09 2010 - 07:18:57 CDT)
• turn off the 'are you sure you want to quit' sound
  • Taufik Al-Sarraj (Fri Jan 30 2009 - 15:49:32 CST)
  • John Stone (Fri Jan 30 2009 - 16:01:04 CST)
• Turn off the autobond feature in VMD
  • Axel Kohlmeyer (Wed Aug 12 2009 - 09:40:08 CDT)
  • John Stone (Wed Aug 12 2009 - 09:58:01 CDT)
  • Liang, Linus H. (Wed Aug 12 2009 - 08:27:55 CDT)
• turning Info output off in vmd console?
  • John Stone (Fri Dec 17 2004 - 10:32:39 CST)
  • pl (Fri Dec 17 2004 - 06:44:03 CST)
• Turning Label Info output off in vmd console
  • Axel Kohlmeyer (Fri Aug 19 2011 - 18:14:30 CDT)
  • Sebastián Gutiérrez (Fri Aug 19 2011 - 15:21:02 CDT)
  • Axel Kohlmeyer (Thu Aug 18 2011 - 19:28:04 CDT)
  • Sebastián Gutiérrez (Thu Aug 18 2011 - 18:14:06 CDT)
• turning on the tcl/tk console in .vmdrc
  • Eduard Schreiner (Tue Sep 14 2010 - 07:35:55 CDT)
  • Tim Travers (Tue Sep 14 2010 - 07:45:14 CDT)
  • Ajasja LjubetiÄ� (Tue Sep 14 2010 - 07:47:49 CDT)
  • Rosanne Zeiler (Tue Sep 14 2010 - 06:18:13 CDT)
• turns, using Stride
  • John Stone (Wed Mar 21 2012 - 13:12:45 CDT)
  • Neelanjana Sengupta (Sat Mar 17 2012 - 02:03:52 CDT)
• tutorial
  • Ajasja LjubetiÄ� (Tue Sep 11 2012 - 04:54:37 CDT)
  • Chris Harrison (Tue Sep 11 2012 - 04:41:16 CDT)
  • BIO MED (Tue Sep 11 2012 - 03:53:07 CDT)
• tutorial 2
  • Axel Kohlmeyer (Thu Sep 13 2012 - 04:18:16 CDT)
  • BIO MED (Thu Sep 13 2012 - 03:12:30 CDT)
• tutorial on inorganic builder
  • John Stone (Tue Mar 13 2012 - 14:52:28 CDT)
  • setyanto md (Tue Mar 13 2012 - 03:56:35 CDT)
• Two (small) VMD 1.2b1 bugs
  • Andrew Dalke (Wed Mar 26 1997 - 13:55:16 CST)
• two coloring method
  • John Stone (Fri Sep 03 2010 - 18:01:00 CDT)
  • Tawhid Ezaz (Fri Sep 03 2010 - 17:18:38 CDT)
• two molecules
  • John Stone (Thu Mar 06 2003 - 14:38:49 CST)
  • Sichun Yang (Thu Mar 06 2003 - 14:33:17 CST)
  • John Stone (Thu Mar 06 2003 - 12:30:12 CST)
  • Matt Whorton (Thu Mar 06 2003 - 12:20:32 CST)
• two Molecules in one pdb and psf
  • Axel Kohlmeyer (Fri Jul 05 2013 - 07:14:28 CDT)
  • Christian Wohlschlager (Fri Jul 05 2013 - 04:37:21 CDT)
• Two open positions related to molecular visualization developments
  • Marc Baaden (Tue Oct 25 2016 - 11:19:23 CDT)
• Two postdoctoral positions available at the computational core of the Pittsburgh Center for HIV Protein Interactions External
  • Juan R. Perilla (Thu Jun 08 2023 - 08:37:45 CDT)
• Two Proteins Question
  • Jérôme Hénin (Thu Oct 20 2022 - 04:12:11 CDT)
  • Mcguire, Kelly (Wed Oct 19 2022 - 16:23:37 CDT)
• Two questions regarding VMD 1.9.3 Windows NetCDF plugin
  • John Stone (Tue Jan 07 2020 - 14:53:13 CST)
  • Li, Zhen (Fri Dec 13 2019 - 16:17:30 CST)
• Two questions: MacOS X and Raster3D output
  • John Stone (Thu Dec 08 2005 - 16:45:16 CST)
  • Mamoru Yamanishi (Wed Dec 07 2005 - 12:28:32 CST)
• Two questions: reordering molecule IDs and deleting frames with TCL commands
  • Axel Kohlmeyer (Sat Mar 11 2023 - 23:49:00 CST)
  • Axel Kohlmeyer (Sat Mar 11 2023 - 23:23:27 CST)
  • Strahs, Dr. Daniel Bernard (Sat Mar 11 2023 - 17:03:09 CST)
• two references
  • Ioana Cozmuta (Wed Apr 26 2006 - 15:18:28 CDT)
• two references- I got them, thank you!
  • Ioana Cozmuta (Wed Apr 26 2006 - 16:15:11 CDT)
• TXT program editor
  • Alejandro Ortega (Fri Aug 29 2008 - 13:11:13 CDT)
  • L. Michel Espinoza-Fonseca (Fri Aug 29 2008 - 10:58:59 CDT)
  • Peter Freddolino (Fri Aug 29 2008 - 09:34:29 CDT)
  • Suman Chakrabarty (Fri Aug 29 2008 - 08:38:29 CDT)
  • bo liu (Fri Aug 29 2008 - 03:17:57 CDT)
  • Emily Moore (Thu Aug 28 2008 - 18:13:01 CDT)
  • Axel Kohlmeyer (Thu Aug 28 2008 - 17:51:39 CDT)
  • Sabuj Pattanayek (Thu Aug 28 2008 - 17:03:11 CDT)
  • Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
  • Axel Kohlmeyer (Thu Aug 28 2008 - 15:50:21 CDT)
  • Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
  • Alejandro Ortega (Thu Aug 28 2008 - 14:43:14 CDT)
• Typing Au(111) surface
  • John Stone (Fri Apr 09 2004 - 10:00:14 CDT)
  • John Stone (Thu Apr 08 2004 - 16:50:46 CDT)
  • Kooser, Ara S (Wed Apr 07 2004 - 15:41:25 CDT)
• Typo in my previous e-mail subject. It's: "VMD" very slow on a 8400M GS laptop....
  • Pietro Amodeo (Sat Nov 17 2012 - 02:18:12 CST)
• Ubiquitin - patch?
  • JC Gumbart (Thu Oct 07 2010 - 23:14:10 CDT)
  • Al-Ali, Hassan (Thu Oct 07 2010 - 22:33:23 CDT)
• Ubuntu launcher and WM_CLASS
  • John Stone (Mon Dec 14 2015 - 09:51:37 CST)
  • Peter Husen (Mon Dec 14 2015 - 07:25:27 CST)
  • John Stone (Fri Dec 11 2015 - 09:02:23 CST)
  • Peter Husen (Fri Dec 11 2015 - 06:55:03 CST)
  • Peter Husen (Fri Dec 11 2015 - 02:47:50 CST)
  • Peter Husen (Fri Dec 11 2015 - 06:31:44 CST)
  • Josh Vermaas (Thu Dec 10 2015 - 16:57:51 CST)
  • John Stone (Thu Dec 10 2015 - 08:54:22 CST)
  • Peter Husen (Thu Dec 10 2015 - 06:07:44 CST)
• ugly font in linux/xubuntu-13.10
  • Axel Kohlmeyer (Sat Nov 23 2013 - 04:10:08 CST)
  • Spitaleri Andrea (Sat Nov 23 2013 - 02:56:18 CST)
• UHBD-grids
  • Luis Rosales (Fri Apr 15 2005 - 17:40:27 CDT)
  • Alexander Spaar (Fri Apr 15 2005 - 04:12:57 CDT)
• Ultra-violet environment simulation in NAMD
  • Jason Smith (Mon Apr 05 2021 - 13:31:05 CDT)
  • Faisal, H M Nasrullah (Mon Apr 05 2021 - 10:55:08 CDT)
• Umbrella Sampling in PLUMED + NAMD
  • Mikhail Suyetin (Mon Apr 22 2019 - 01:33:04 CDT)
• Umbrella sampling windows
  • Giacomo Fiorin (Sun Sep 05 2021 - 00:32:12 CDT)
  • Ropon-Palacios G. (Sat Sep 04 2021 - 22:05:10 CDT)
  • Giacomo Fiorin (Sat Sep 04 2021 - 19:50:44 CDT)
  • Ropon-Palacios G. (Sat Sep 04 2021 - 16:24:03 CDT)
  • Vermaas, Josh (Sat Sep 04 2021 - 16:10:37 CDT)
  • Ropon-Palacios G. (Sat Sep 04 2021 - 13:19:49 CDT)
• Umbrella sampling windows run
  • Ropon-Palacios G. (Wed Sep 15 2021 - 17:39:31 CDT)
• Unable to access config file
  • Richard Wood (Fri Dec 11 2015 - 11:32:04 CST)
  • Maxim Belkin (Fri Dec 11 2015 - 11:36:14 CST)
  • Ajasja LjubetiÄ� (Fri Dec 11 2015 - 11:24:18 CST)
  • Richard Wood (Fri Dec 11 2015 - 08:51:37 CST)
  • Pawel Kedzierski (Fri Dec 11 2015 - 03:52:26 CST)
  • Ajasja LjubetiÄ� (Fri Dec 11 2015 - 02:31:41 CST)
  • Ashar Malik (Thu Dec 10 2015 - 22:57:56 CST)
  • Julio Cantu (Thu Dec 10 2015 - 17:36:05 CST)
• unable to access vmd through ssh x11 forward using mobaxterm
  • John Stone (Thu Jul 30 2020 - 00:18:24 CDT)
  • SHRAVANI NETHI . (Sat Jul 11 2020 - 02:25:29 CDT)
• unable to animate alanine.dcd
  • Andrew Dalke (Mon Dec 08 1997 - 13:34:06 CST)
  • root (Mon Dec 08 1997 - 03:41:44 CST)
  • Andrew Dalke (Sun Dec 07 1997 - 23:16:55 CST)
  • root (Sat Dec 06 1997 - 08:08:16 CST)
  • Barry Isralewitz (Sat Dec 06 1997 - 07:30:28 CST)
  • root (Sat Dec 06 1997 - 07:26:43 CST)
• Unable to build a symmetric (m=0) zigzag BN nanotube in VMD
  • Axel Kohlmeyer (Wed Feb 28 2018 - 02:15:29 CST)
  • Aman Jindal (Wed Feb 28 2018 - 01:29:20 CST)
• Unable to compile plugins on MACOSXX86
  • Olaf Lenz (Fri Dec 08 2006 - 07:27:11 CST)
• Unable to compile plugins on MACOSXX86)
  • Olaf Lenz (Fri Dec 08 2006 - 10:56:44 CST)
• Unable to create OpenGL window for vmd starting
  • John Stone (Tue Jun 21 2005 - 10:54:24 CDT)
  • Justin (Mon Jun 20 2005 - 18:36:36 CDT)
  • John Stone (Mon Jun 20 2005 - 18:07:45 CDT)
  • Justin (Mon Jun 20 2005 - 11:52:52 CDT)
  • John Stone (Mon Jun 20 2005 - 11:04:56 CDT)
  • Justin (Mon Jun 20 2005 - 10:57:55 CDT)
• unable to create OpenGL window.
  • John Stone (Mon Nov 10 2014 - 00:58:23 CST)
  • Seera Suryanarayana (Mon Nov 10 2014 - 00:41:14 CST)
• Unable to create psf
  • Sourav Ray (Sat May 07 2016 - 10:40:24 CDT)
  • Roshan Shrestha (Sat May 07 2016 - 09:43:03 CDT)
• Unable to create PSF file
  • Peter Freddolino (Fri Jul 03 2020 - 13:01:33 CDT)
  • Alilovic,Kata (Fri Jul 03 2020 - 12:55:10 CDT)
  • Peter Freddolino (Thu Jul 02 2020 - 19:05:20 CDT)
  • Alilovic,Kata (Thu Jul 02 2020 - 16:04:29 CDT)
• Unable to Delete Macro QwikMD Error
  • Efthymiou, Christos (Mon Aug 01 2022 - 03:55:53 CDT)
• Unable to find bond parameters for NOH P4 (ATOMS 292 294)
  • Aaron Oakley (Thu May 02 2013 - 18:50:39 CDT)
  • Ф¸»¹ó (Thu May 02 2013 - 04:14:35 CDT)
• Unable to find Stride output file: /usr/tmp/...
  • Roman Petrenko (Tue Oct 27 2009 - 15:13:10 CDT)
  • Axel Kohlmeyer (Tue Oct 27 2009 - 13:18:17 CDT)
  • John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
  • John Stone (Tue Oct 27 2009 - 12:56:51 CDT)
  • Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
  • Bob Johnson (Tue Oct 27 2009 - 12:22:03 CDT)
  • John Stone (Tue Oct 27 2009 - 12:45:16 CDT)
  • Bob Johnson (Tue Oct 27 2009 - 12:47:55 CDT)
• Unable to fit dihedral to QM target data in FFTK
  • Akash Banerjee (Tue Feb 02 2021 - 08:20:56 CST)
  • Daniel Fellner (Mon Feb 01 2021 - 18:45:03 CST)
  • Akash Banerjee (Mon Feb 01 2021 - 11:10:34 CST)
  • Gumbart, JC (Mon Feb 01 2021 - 09:49:35 CST)
  • Akash Banerjee (Thu Jan 28 2021 - 16:28:57 CST)
  • Akash Banerjee (Mon Jan 18 2021 - 16:31:20 CST)
• Unable to generate surface
  • John Stone (Mon Jun 24 2002 - 11:33:52 CDT)
  • Sanjeev B.S. (Sun Jun 23 2002 - 21:40:32 CDT)
• unable to install VMD on OSX
  • Ray, William (Wed Apr 04 2018 - 14:19:30 CDT)
  • Raag Saluja (Wed Apr 04 2018 - 12:40:18 CDT)
• Unable to install vmdICE plugin in VMD
  • gagandeep singh (Wed May 27 2020 - 15:00:35 CDT)
  • gagandeep singh (Wed May 27 2020 - 18:33:12 CDT)
  • gagandeep singh (Wed May 27 2020 - 09:39:36 CDT)
  • Giacomo Fiorin (Wed May 27 2020 - 09:28:30 CDT)
  • gagandeep singh (Wed May 27 2020 - 15:37:11 CDT)
• Unable to ionize a solvated structure using autoionization
  • John Stone (Mon Jul 24 2006 - 11:59:11 CDT)
  • Jose Dinto (Mon Jul 24 2006 - 09:56:41 CDT)
• Unable to load
  • O'Reilly Science Art (Thu Oct 05 2017 - 17:20:24 CDT)
  • John Stone (Thu Oct 05 2017 - 13:49:28 CDT)
  • O'Reilly Science Art (Thu Oct 05 2017 - 13:25:01 CDT)
  • O'Reilly Science Art (Thu Oct 05 2017 - 13:43:16 CDT)
  • O'Reilly Science Art (Thu Oct 05 2017 - 13:07:21 CDT)
• unable to load .xtc files on VMD 1.8.7
  • Collins Nganou (Thu Aug 22 2013 - 08:05:12 CDT)
  • Axel Kohlmeyer (Wed Aug 21 2013 - 19:46:26 CDT)
  • Holden Ranz (Wed Aug 21 2013 - 16:18:50 CDT)
• unable to load Amber trajectories to visualize-Coordinate I/O rate 0 frames/sec, 0 MB/sec, 32.4 sec -Please help
  • hongphuc nguyen (Wed Oct 05 2011 - 03:30:58 CDT)
• unable to load cartoon represention of my peptide
  • John Stone (Sat Dec 01 2012 - 22:32:47 CST)
  • Shubhadip Das (Sat Dec 01 2012 - 01:49:23 CST)
• Unable to load molecule
  • Ajasja LjubetiÄ� (Fri May 04 2018 - 03:05:11 CDT)
  • Ajasja LjubetiÄ� (Thu May 03 2018 - 08:38:53 CDT)
  • João Ribeiro (Thu May 03 2018 - 08:28:48 CDT)
  • Ajasja LjubetiÄ� (Thu May 03 2018 - 06:31:23 CDT)
  • 김민재 (Thu May 03 2018 - 05:16:28 CDT)
• Unable to open TkConsole, Possible bug!
  • Adupa Vasista (Wed Oct 14 2020 - 09:27:24 CDT)
  • John Stone (Wed Oct 14 2020 - 08:56:53 CDT)
  • Adupa Vasista (Wed Oct 14 2020 - 01:51:21 CDT)
• unable to open VMD as normal
  • He, Xibing (Fri Feb 09 2024 - 14:52:08 CST)
  • Gumbart, JC (Thu Feb 08 2024 - 10:30:48 CST)
  • He, Xibing (Wed Feb 07 2024 - 11:17:51 CST)
  • Diego Gomes (Wed Feb 07 2024 - 02:13:14 CST)
  • Bennion, Brian (Tue Feb 06 2024 - 17:42:31 CST)
  • He, Xibing (Tue Feb 06 2024 - 15:28:26 CST)
  • Diego Gomes (Tue Feb 06 2024 - 15:07:22 CST)
  • He, Xibing (Tue Feb 06 2024 - 14:42:07 CST)
  • He, Xibing (Tue Feb 06 2024 - 12:37:10 CST)
  • Diego Gomes (Tue Feb 06 2024 - 12:25:08 CST)
  • Bennion, Brian (Tue Feb 06 2024 - 11:57:41 CST)
  • Axel Kohlmeyer (Tue Feb 06 2024 - 10:46:16 CST)
  • He, Xibing (Tue Feb 06 2024 - 09:36:19 CST)
  • Axel Kohlmeyer (Mon Feb 05 2024 - 19:26:07 CST)
  • He, Xibing (Mon Feb 05 2024 - 17:35:11 CST)
  • Axel Kohlmeyer (Mon Feb 05 2024 - 16:58:07 CST)
  • He, Xibing (Mon Feb 05 2024 - 11:41:38 CST)
• Unable to open VMD on Mac
  • Anirudh Nandakumar (Wed Jun 16 2021 - 08:34:31 CDT)
• uNABLE TO OPEN VMD ON WINDOWS 2K
  • John Stone (Wed Jan 31 2007 - 21:32:47 CST)
  • Caio Julio Martins Veloso (Wed Jan 31 2007 - 21:38:03 CST)
• Unable to patch RNA to obtain DNA
  • #YEO JINGJIE# (Wed Mar 23 2016 - 14:48:35 CDT)
• Unable to re-install vmd
  • Axel Kohlmeyer (Mon Feb 04 2013 - 11:43:50 CST)
  • Soumya Lipsa Rath (Mon Feb 04 2013 - 00:01:33 CST)
• Unable to read corrupted binary DCD trajectory file
  • John Stone (Mon Sep 08 2014 - 16:13:11 CDT)
  • Josh Vermaas (Mon Sep 08 2014 - 14:23:00 CDT)
  • Viswanath Pasumarthi (Mon Sep 08 2014 - 14:05:10 CDT)
  • Josh Vermaas (Mon Sep 08 2014 - 10:15:23 CDT)
  • Viswanath Pasumarthi (Mon Sep 08 2014 - 10:01:07 CDT)
  • John Stone (Mon Sep 08 2014 - 10:00:13 CDT)
  • Viswanath Pasumarthi (Mon Sep 08 2014 - 09:03:50 CDT)
• Unable to reload a saved state in VMD 1.9.3
  • Debostuti Ghoshdastidar (Fri May 06 2022 - 01:18:10 CDT)
  • John Stone (Thu May 05 2022 - 23:21:28 CDT)
  • Debostuti Ghoshdastidar (Mon May 02 2022 - 13:26:46 CDT)
  • John Stone (Mon May 02 2022 - 12:51:30 CDT)
  • Debostuti Ghoshdastidar (Mon May 02 2022 - 07:17:12 CDT)
• Unable to remove sudden RMSD jumps between two segments
  • Jérôme Hénin (Fri May 26 2017 - 10:55:22 CDT)
  • Giacomo Fiorin (Thu May 25 2017 - 22:27:42 CDT)
  • Peter Mawanga (Thu May 25 2017 - 21:02:18 CDT)
  • Giacomo Fiorin (Thu May 25 2017 - 09:19:09 CDT)
  • Peter Mawanga (Thu May 25 2017 - 02:13:12 CDT)
• Unable to rename material
  • Vasista (Mon Apr 04 2022 - 05:40:43 CDT)
• Unable to render electrostatic potential cube files with most non-HF densities
  • Axel Kohlmeyer (Thu Jun 11 2009 - 09:19:21 CDT)
  • John Stone (Thu Jun 11 2009 - 08:54:59 CDT)
  • Whiteside, Alexander (Thu Jun 11 2009 - 08:39:21 CDT)
• Unable to Render modified positions of labels with Tachyon
  • John Stone (Tue Apr 11 2017 - 02:57:14 CDT)
  • Peter Mawanga (Mon Apr 10 2017 - 20:33:11 CDT)
  • Peter Mawanga (Mon Apr 10 2017 - 20:22:17 CDT)
• Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem
  • Katya Lyakhova (Wed Jan 28 2009 - 09:19:35 CST)
  • John Stone (Wed Jan 28 2009 - 09:25:52 CST)
• Unable to see VDW , CPK representations
  • John Stone (Thu Feb 21 2008 - 11:34:53 CST)
  • Arnab Chakrabarty (Sat Feb 16 2008 - 17:51:04 CST)
  • Axel Kohlmeyer (Fri Feb 15 2008 - 16:51:34 CST)
  • John Stone (Fri Feb 15 2008 - 16:42:15 CST)
  • Arnab Chakrabarty (Fri Feb 15 2008 - 16:25:23 CST)
• Unable to set coordinates in pdb - AutoPSF
  • Peter Freddolino (Sun Dec 11 2016 - 14:46:51 CST)
  • Harish Srinivasan (Thu Dec 08 2016 - 21:10:50 CST)
• Unable to use plots with QwikMD
  • Diego Gomes (Sun Aug 13 2023 - 15:18:25 CDT)
  • Javier Badilla (Fri Aug 11 2023 - 08:09:42 CDT)
• Unable to use short loabels
  • John Stone (Wed Oct 30 2002 - 10:14:14 CST)
  • Stéphane Teletchéa (Wed Oct 30 2002 - 03:50:01 CST)
• Unable to use VMD1.9.1 binary (no CUDA) on Mac OSX 10.9.3
  • Leah Isseroff Bendavid (Fri May 16 2014 - 11:55:33 CDT)
  • John Stone (Fri May 16 2014 - 11:27:50 CDT)
  • Maxim Belkin (Fri May 16 2014 - 10:56:34 CDT)
  • John Stone (Fri May 16 2014 - 10:04:00 CDT)
  • Joshua Skootsky (Thu May 15 2014 - 21:51:17 CDT)
  • Leah Isseroff Bendavid (Thu May 15 2014 - 20:58:40 CDT)
• Unable to useTachyon-Optix renderer when VMD is installed in Windows Subsystem for Linux (WSL)
  • Vaidehi Doke (Wed Jun 15 2022 - 01:47:03 CDT)
  • John Stone (Wed Jun 15 2022 - 00:01:03 CDT)
  • Vermaas, Josh (Wed Jun 08 2022 - 08:23:15 CDT)
  • Vaidehi Doke (Wed Jun 08 2022 - 06:56:04 CDT)
• unable to view .pdb file
  • Akshay Bhatnagar (Tue Sep 08 2015 - 11:17:14 CDT)
  • John Stone (Tue Sep 08 2015 - 09:51:27 CDT)
  • Raag Saluja (Tue Sep 08 2015 - 10:02:17 CDT)
  • John Stone (Tue Sep 08 2015 - 10:17:49 CDT)
  • Raag Saluja (Tue Sep 08 2015 - 08:16:51 CDT)
• Unable to view protein as cartoon or trace or tube
  • jiali wang (Mon Jan 13 2020 - 17:31:33 CST)
  • Igor Leontyev (Mon Jan 13 2020 - 03:18:45 CST)
  • Maxim Belkin (Mon May 02 2016 - 12:25:44 CDT)
  • John Stone (Mon May 02 2016 - 10:57:03 CDT)
  • John Stone (Fri Apr 29 2016 - 21:53:46 CDT)
  • surendra jain (Fri Apr 29 2016 - 21:34:47 CDT)
• Unable to visualize my polymer chains generated using RIS theory using VMD properly
  • Chitrak Gupta (Tue Mar 29 2016 - 08:11:27 CDT)
  • Chitrak Gupta (Sun Mar 20 2016 - 17:27:42 CDT)
  • ABHISHEK GUPTA (Sat Mar 19 2016 - 00:06:59 CDT)
  • John Stone (Wed Mar 16 2016 - 11:25:51 CDT)
  • ABHISHEK GUPTA (Fri Mar 11 2016 - 21:09:52 CST)
• Unable to visualize the solid isosurfaces
  • Shivanand Malaganvi (Tue Sep 12 2017 - 10:46:00 CDT)
  • Shivanand Malaganvi (Wed Aug 30 2017 - 07:12:33 CDT)
• Unaligned access to ...
  • John Stone (Tue Jan 09 2007 - 14:18:54 CST)
  • Axel Kohlmeyer (Mon Jan 08 2007 - 19:10:39 CST)
  • John Stone (Mon Jan 08 2007 - 11:09:42 CST)
  • Christian Wohlschlager (Mon Jan 08 2007 - 02:57:56 CST)
• Uncertainty estimate of g(r) using measure gofr function
  • Jim Parker (Mon Jan 21 2019 - 21:48:42 CST)
• Uncharged terminal ends?
  • Michel Espinoza-Fonseca (Tue Nov 29 2005 - 04:46:38 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 29 2005 - 03:22:05 CST)
  • Jim Phillips (Mon Nov 28 2005 - 19:14:35 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 22 2005 - 06:16:44 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 06:44:36 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 05:41:24 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 22 2005 - 05:13:43 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 04:57:18 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 22 2005 - 04:40:25 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 04:32:02 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 22 2005 - 04:16:55 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 04:18:27 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 22 2005 - 04:00:00 CST)
  • Michel Espinoza-Fonseca (Tue Nov 22 2005 - 03:57:06 CST)
  • hodak_at_chips.ncsu.edu (Tue Nov 22 2005 - 03:18:06 CST)
  • Justin Gullingsrud (Mon Nov 21 2005 - 11:49:19 CST)
  • hodak_at_chips.ncsu.edu (Mon Nov 21 2005 - 02:19:10 CST)
  • Justin Gullingsrud (Sun Nov 20 2005 - 15:12:11 CST)
  • hodak_at_chips.ncsu.edu (Fri Nov 18 2005 - 17:41:13 CST)
• uncompress files in tcl script
  • John Stone (Thu Feb 09 2006 - 15:18:24 CST)
  • Joseph Fernandez (Thu Feb 09 2006 - 14:56:51 CST)
  • Axel Kohlmeyer (Thu Feb 09 2006 - 12:20:44 CST)
  • Nuno R. L. Ferreira (Thu Feb 09 2006 - 10:28:22 CST)
  • Joseph Fernandez (Thu Feb 09 2006 - 09:55:05 CST)
• Understand a script
  • Bjoern Olausson (Thu Jul 28 2011 - 03:28:41 CDT)
  • Erik Nordgren (Wed Jul 27 2011 - 14:39:02 CDT)
  • Sara baretller (Tue Jul 26 2011 - 12:49:41 CDT)
  • Ajasja LjubetiÄ� (Tue Jul 26 2011 - 03:54:58 CDT)
  • Axel Kohlmeyer (Mon Jul 25 2011 - 10:50:47 CDT)
  • Paul VanAllsburg (Mon Jul 25 2011 - 10:58:51 CDT)
  • Axel Kohlmeyer (Mon Jul 25 2011 - 10:23:31 CDT)
  • Bjoern Olausson (Mon Jul 25 2011 - 10:05:59 CDT)
  • Sara baretller (Mon Jul 25 2011 - 08:35:51 CDT)
• understanding NOE restraints
  • Charles_at_Schwieters.org (Tue May 03 2005 - 05:52:56 CDT)
  • Amarda Shehu (Mon May 02 2005 - 18:56:34 CDT)
• Understanding the positional difference of all atoms between two frames
  • SYEDA SABIHA SULTANA LUBNA . (Tue Aug 17 2021 - 03:02:23 CDT)
• Understanding topology files?
  • Javier Goicochea (Fri Jan 16 2009 - 02:10:19 CST)
  • Axel Kohlmeyer (Thu Jan 15 2009 - 14:06:16 CST)
  • Christopher Gillespie (Thu Jan 15 2009 - 10:27:52 CST)
  • Javier Goicochea (Thu Jan 15 2009 - 10:32:55 CST)
  • Javier Goicochea (Thu Jan 15 2009 - 10:11:05 CST)
  • Christopher Gillespie (Thu Jan 15 2009 - 09:25:23 CST)
  • Javier Goicochea (Thu Jan 15 2009 - 08:03:50 CST)
• undrawing lines in multiplot?
  • Nadja Lederer (Wed Dec 03 2008 - 02:29:57 CST)
• Unequal atoms size
  • John Stone (Wed Jul 26 2017 - 09:49:44 CDT)
  • Ashar Malik (Wed Jul 26 2017 - 03:37:36 CDT)
  • Afnan Sultan (Wed Jul 26 2017 - 03:08:01 CDT)
• Unexpected End-of-file?
  • Dallas B. Warren (Thu Aug 24 2006 - 17:38:28 CDT)
  • John Stone (Thu Aug 24 2006 - 00:44:22 CDT)
  • Axel Kohlmeyer (Wed Aug 23 2006 - 23:59:52 CDT)
  • Marc Charendoff (Wed Aug 23 2006 - 20:23:52 CDT)
• Unexpected results after loop added to the script
  • fan li (Tue Aug 14 2018 - 11:32:26 CDT)
• Uniform Distribution of drug molecules in water
  • meisam valizadeh kiamahalleh (Wed Oct 12 2011 - 09:35:03 CDT)
• uninitialized coordinates
  • Jim Phillips (Tue Nov 11 2003 - 17:26:02 CST)
  • himanshu chandola (Tue Nov 11 2003 - 17:58:45 CST)
• uninstall of previous version
  • mohammad agha (Thu Dec 06 2012 - 05:19:08 CST)
  • Axel Kohlmeyer (Thu Dec 06 2012 - 03:44:21 CST)
  • mohammad agha (Thu Dec 06 2012 - 02:40:20 CST)
• Uninstalling VMD
  • Giacomo Fiorin (Mon Feb 06 2023 - 07:46:44 CST)
  • Sarthak Mohanty (Mon Feb 06 2023 - 01:40:43 CST)
• unique opportunity - 20% discount for the EuroQSAR 2006
  • andras.borosy_at_givaudan.com (Tue Aug 15 2006 - 10:54:04 CDT)
• unique residue names
  • Jim Kress (Thu Aug 09 2012 - 13:26:28 CDT)
  • Axel Kohlmeyer (Thu Aug 09 2012 - 11:12:39 CDT)
  • Jim Kress (Thu Aug 09 2012 - 10:47:33 CDT)
  • Jim Kress (Thu Aug 09 2012 - 09:55:42 CDT)
• UNIT CELL
  • Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
  • Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
  • Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
  • Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
  • Narasimhan LOGANATHAN (Wed Jan 06 2010 - 05:21:19 CST)
  • Olaf Lenz (Wed Jan 06 2010 - 04:58:21 CST)
  • Narasimhan LOGANATHAN (Wed Jan 06 2010 - 02:37:11 CST)
  • Olaf Lenz (Wed Dec 30 2009 - 04:13:59 CST)
  • Axel Kohlmeyer (Tue Dec 29 2009 - 10:37:59 CST)
  • Narasimhan LOGANATHAN (Tue Dec 29 2009 - 09:49:29 CST)
  • John Stone (Wed Nov 12 2003 - 17:21:32 CST)
  • Y U Sasidhar (Mon Nov 10 2003 - 21:25:08 CST)
  • John Stone (Mon Nov 10 2003 - 16:44:22 CST)
  • Juan Alfredo Freites (Mon Nov 10 2003 - 14:43:42 CST)
• Unit cell coordinates and radial distribution functions
  • Ben Roberts (Thu Jul 22 2004 - 20:27:18 CDT)
  • Axel Kohlmeyer (Tue Jul 20 2004 - 01:29:03 CDT)
  • Ben Roberts (Mon Jul 19 2004 - 21:12:38 CDT)
• Unit cell for clay material
  • Axel Kohlmeyer (Sat Jul 25 2015 - 17:12:56 CDT)
  • Evgeniya Volkova (Sat Jul 25 2015 - 15:55:00 CDT)
• unit cell information
  • Justin Gullingsrud (Mon Apr 28 2003 - 12:07:46 CDT)
  • John Stone (Fri Apr 25 2003 - 17:28:48 CDT)
  • Ioana Cozmuta (Fri Apr 25 2003 - 15:46:35 CDT)
  • Ioana Cozmuta (Fri Apr 25 2003 - 15:34:41 CDT)
• Unit cell information in python and IMD interface code
  • Justin Gullingsrud (Mon Mar 31 2003 - 12:12:22 CST)
  • Justin Gullingsrud (Fri Mar 28 2003 - 12:03:31 CST)
  • Lars Bruno Hansen (Thu Mar 27 2003 - 09:26:57 CST)
• Unit Cell PDB of Copper
  • M K (Mon Feb 02 2015 - 20:29:56 CST)
  • Axel Kohlmeyer (Mon Feb 02 2015 - 17:53:34 CST)
  • JAVAD NOROOZI (Mon Feb 02 2015 - 17:04:35 CST)
• unit cell volume is zero
  • jeela keel (Wed Jan 25 2012 - 16:59:19 CST)
  • John Stone (Wed Jan 25 2012 - 16:03:35 CST)
  • Axel Kohlmeyer (Wed Jan 25 2012 - 16:03:04 CST)
  • jeela keel (Wed Jan 25 2012 - 15:56:40 CST)
• Unit for RMSD cut-off in clustering tool
  • Vermaas, Joshua (Fri Oct 18 2019 - 14:05:12 CDT)
  • Neena Susan Eappen (Fri Oct 18 2019 - 10:53:58 CDT)
• unit of force using Haptic during IMD
  • John Stone (Fri May 14 2004 - 10:33:10 CDT)
  • Harit Jani (Fri May 14 2004 - 01:34:02 CDT)
• Unit of RMSF calculated by measure
  • Josh Vermaas (Mon Dec 16 2013 - 09:29:33 CST)
  • HIRA BATOOL (Sat Dec 14 2013 - 05:30:17 CST)
• Units for Measure Dipole
  • Ignacio Fernández Galván (Tue Feb 06 2007 - 03:50:06 CST)
  • Leonor Cruzeiro (Mon Feb 05 2007 - 14:04:09 CST)
  • Axel Kohlmeyer (Mon Feb 05 2007 - 12:04:12 CST)
  • John Stone (Mon Feb 05 2007 - 10:32:40 CST)
  • Axel Kohlmeyer (Fri Feb 02 2007 - 18:28:15 CST)
  • Kim Gunnerson (Fri Feb 02 2007 - 16:51:16 CST)
• units of "measure dipole"
  • Axel Kohlmeyer (Tue May 11 2010 - 16:23:51 CDT)
  • Axel Kohlmeyer (Tue May 11 2010 - 15:53:29 CDT)
  • Axel Kohlmeyer (Tue May 11 2010 - 15:29:59 CDT)
  • Edward Lyman (Tue May 11 2010 - 15:35:56 CDT)
  • Edward Lyman (Tue May 11 2010 - 14:47:45 CDT)
• Units of bond distance in vmd
  • Axel Kohlmeyer (Thu Nov 08 2012 - 12:20:34 CST)
  • siladitya mukherjee (Thu Nov 08 2012 - 12:22:16 CST)
  • siladitya mukherjee (Thu Nov 08 2012 - 11:04:06 CST)
• Units of Isovalue Slider in Isovalue Drawing Method
  • Axel Kohlmeyer (Wed Apr 18 2012 - 21:10:24 CDT)
  • Andrew DeYoung (Wed Apr 18 2012 - 20:52:13 CDT)
  • John Stone (Wed Apr 18 2012 - 20:49:08 CDT)
  • Andrew DeYoung (Wed Apr 18 2012 - 20:08:53 CDT)
• Units of moments of inertia
  • Sadegh Faramarzi Ganjabad (Fri Mar 18 2016 - 14:00:43 CDT)
  • Josh Vermaas (Tue Mar 15 2016 - 10:00:00 CDT)
  • Sadegh Faramarzi Ganjabad (Mon Mar 14 2016 - 17:43:06 CDT)
• units on the volmap tool
  • Raul Araya (Sat Sep 17 2011 - 00:26:04 CDT)
• Units reported by VMD SASA ???
  • Germán Andrés Miño (Mon Oct 22 2012 - 19:06:35 CDT)
• Units used by Volmap Tool
  • Maxim Belkin (Fri Aug 15 2014 - 16:27:11 CDT)
  • Alexandre Suman de Araujo (Fri Aug 15 2014 - 12:54:58 CDT)
• unix -vmd
  • John Stone (Tue Nov 26 2002 - 17:39:34 CST)
  • Ioana Cozmuta (Tue Nov 26 2002 - 17:29:25 CST)
• Unknown atom type CG205 with CGenFF by psfgen
  • Vermaas, Joshua (Fri Oct 26 2018 - 12:21:06 CDT)
  • Francesco Pietra (Fri Oct 26 2018 - 10:09:08 CDT)
• Unknown atom type while running psfgen
  • Arusha Acharyya (Mon Oct 26 2020 - 20:37:20 CDT)
• unknown residue type
  • Francesco Pietra (Mon Nov 05 2018 - 00:36:38 CST)
  • Peter Freddolino (Sun Nov 04 2018 - 07:48:48 CST)
  • Francesco Pietra (Sun Nov 04 2018 - 03:08:49 CST)
• Unknown residue type ZN
  • Peter Freddolino (Tue Apr 18 2006 - 09:33:19 CDT)
  • Per Jr. Greisen (Tue Apr 18 2006 - 08:22:33 CDT)
• Unknown variable modifier. while running vmd
  • John Stone (Thu Dec 29 2022 - 11:20:31 CST)
  • Diship Srivastava (Tue Nov 29 2022 - 23:33:40 CST)
• unloading volumetric data
  • Ondrej Marsalek (Mon Nov 24 2008 - 11:09:35 CST)
  • John Stone (Mon Nov 24 2008 - 10:32:14 CST)
  • Ondrej Marsalek (Mon Nov 24 2008 - 10:18:39 CST)
• unparameterized residue
  • sarah k (Sun Oct 25 2009 - 02:24:21 CDT)
• Unprotonating GLU, ASP
  • Gaurav Sharma (Tue Feb 15 2005 - 17:13:16 CST)
  • Luis Rosales (Tue Feb 15 2005 - 20:29:32 CST)
  • Luis Rosales (Tue Feb 15 2005 - 18:16:00 CST)
  • Gaurav Sharma (Tue Feb 15 2005 - 10:42:06 CST)
• unreadable prmtop's and reference memory error?
  • John Stone (Thu May 17 2007 - 12:21:26 CDT)
  • Stern, Julie (Thu May 17 2007 - 11:47:04 CDT)
• Unrecognized Chains in VMD for tetrameric protein
  • John Stone (Thu Feb 19 2009 - 18:57:54 CST)
  • ben rodriguez (Thu Feb 19 2009 - 18:14:55 CST)
• unusual bond between the cysteine and arginine residue during the simulation
  • John Stone (Fri Feb 29 2008 - 15:06:49 CST)
  • OZGE ENGIN (Fri Feb 29 2008 - 15:01:10 CST)
  • Axel Kohlmeyer (Fri Feb 29 2008 - 13:47:55 CST)
  • John Stone (Fri Feb 29 2008 - 13:58:08 CST)
  • OZGE ENGIN (Fri Feb 29 2008 - 13:30:01 CST)
• unusual bond warning during psf building
  • melis.yildirim_at_boun.edu.tr (Mon Jul 22 2013 - 09:19:51 CDT)
• unusual bonds
  • John Stone (Mon Mar 08 2004 - 17:28:46 CST)
  • Satyavani Vemparala (Sat Mar 06 2004 - 04:31:27 CST)
• Unusual coordinates in PDB files exracted from dcd file
  • Peter Freddolino (Sat Sep 26 2020 - 21:29:29 CDT)
  • Mark Zottola (Fri Sep 25 2020 - 18:51:17 CDT)
  • Axel Kohlmeyer (Sun Sep 20 2020 - 21:12:41 CDT)
  • Mark Zottola (Sun Sep 20 2020 - 20:17:39 CDT)
  • Bassam Haddad (Sun Sep 20 2020 - 17:21:56 CDT)
  • Mark Zottola (Sun Sep 20 2020 - 02:01:08 CDT)
• unusual residue type problem..
  • John Stone (Wed Mar 07 2007 - 13:34:35 CST)
  • hl332_at_drexel.edu (Tue Mar 06 2007 - 14:24:17 CST)
  • John Stone (Tue Mar 06 2007 - 12:52:25 CST)
  • hl332_at_drexel.edu (Tue Mar 06 2007 - 11:38:08 CST)
• Unusual visualisations
  • John Stone (Wed Feb 01 2012 - 16:11:07 CST)
  • John Stone (Wed Feb 01 2012 - 10:50:30 CST)
  • Ben Hall (Wed Feb 01 2012 - 09:54:01 CST)
• unwap/wrap failure in recomposing splitted system from periodic cells
  • Francesco Pietra (Fri Jun 12 2015 - 10:53:34 CDT)
  • Josh Vermaas (Fri Jun 12 2015 - 09:47:24 CDT)
  • Francesco Pietra (Fri Jun 12 2015 - 02:33:33 CDT)
  • Josh Vermaas (Thu Jun 11 2015 - 14:31:39 CDT)
  • Francesco Pietra (Thu Jun 11 2015 - 12:24:23 CDT)
• Unwrap for diffusion phenomena?
  • Georcki Ropon (Fri Jul 16 2021 - 00:51:47 CDT)
  • Ropon-Palacios G. (Tue Jul 13 2021 - 15:53:39 CDT)
  • Vermaas, Josh (Tue Jul 13 2021 - 15:49:35 CDT)
  • Ropon-Palacios G. (Tue Jul 13 2021 - 15:36:43 CDT)
  • Ropon-Palacios G. (Tue Jul 13 2021 - 14:01:04 CDT)
• Unwrap issue, Completely Different Chart Than Expected, Trajectory Compromised
  • Aryan Vahedi-Faridi (Thu Jul 30 2015 - 15:04:12 CDT)
• Unwrap visualization
  • Ivan Moncayo (Fri May 30 2014 - 16:17:32 CDT)
• unwrapping 'wrapping' DCd files
  • John Stone (Mon Jan 24 2005 - 14:22:45 CST)
  • Vani Krishna (Fri Jan 21 2005 - 23:44:07 CST)
• Unwrapping a trajectory with H2O
  • Axel Kohlmeyer (Fri Mar 21 2014 - 15:23:29 CDT)
  • Axel Kohlmeyer (Tue Mar 18 2014 - 01:10:34 CDT)
  • Kipp Johnson (Mon Mar 17 2014 - 18:08:45 CDT)
• unwrapping long trajectories
  • Edward Lyman (Fri Jun 15 2012 - 23:35:58 CDT)
  • Axel Kohlmeyer (Thu Jun 14 2012 - 13:51:02 CDT)
  • Joshua D. Moore (Thu Jun 14 2012 - 12:34:40 CDT)
  • Edward Lyman (Mon Jun 11 2012 - 18:05:32 CDT)
  • Jérôme Hénin (Mon Jun 11 2012 - 09:54:00 CDT)
  • Edward Lyman (Fri Jun 08 2012 - 10:09:48 CDT)
• up arrow for previous commands
  • John Stone (Fri Jan 18 2002 - 11:03:39 CST)
• up arrow for previous commands (with the command attached)
  • Justin Gullingsrud (Sat Jan 19 2002 - 01:46:17 CST)
  • Paul Grayson (Fri Jan 18 2002 - 13:42:54 CST)
• Upcoming NAMD Workshop
  • Jim Phillips (Tue Feb 26 2002 - 15:24:32 CST)
• Update atom labels each frame
  • Sandeep Kumar Reddy (Wed Dec 19 2012 - 00:42:18 CST)
• UPDATE OCCUPANCY
  • John Stone (Fri Nov 11 2011 - 09:22:49 CST)
  • Axel Kohlmeyer (Fri Nov 11 2011 - 07:34:53 CST)
  • Jordi Faraudo (Fri Nov 11 2011 - 06:04:50 CST)
• update of atom selection at each step for trajectories
  • Axel Kohlmeyer (Wed Oct 18 2006 - 12:09:04 CDT)
  • Tim Meyer (Wed Oct 18 2006 - 11:21:36 CDT)
• Update on email sent last week
  • SHIVAM TIWARI (Mon Jan 11 2021 - 12:48:22 CST)
  • John Stone (Mon Jan 11 2021 - 12:11:34 CST)
  • Tiglath Moradkhan (Mon Jan 11 2021 - 12:00:46 CST)
• Update Plugin
  • DanLiu (Tue Feb 25 2014 - 07:33:29 CST)
  • Axel Kohlmeyer (Tue Feb 25 2014 - 07:49:58 CST)
  • Axel Kohlmeyer (Tue Feb 25 2014 - 07:51:59 CST)
  • Axel Kohlmeyer (Tue Feb 25 2014 - 06:54:45 CST)
  • Axel Kohlmeyer (Tue Feb 25 2014 - 06:57:20 CST)
  • DanLiu (Tue Feb 25 2014 - 06:35:34 CST)
  • DanLiu (Tue Feb 25 2014 - 06:42:05 CST)
  • Olaf Lenz (Tue Feb 25 2014 - 06:28:57 CST)
  • Axel Kohlmeyer (Tue Feb 25 2014 - 05:56:22 CST)
  • DanLiu (Tue Feb 25 2014 - 05:18:07 CST)
• update sec. structure in animation, sscache
  • Raik Gruenberg (Mon Dec 11 2000 - 10:40:13 CST)
• Update selection every frame command
  • Axel Kohlmeyer (Thu Aug 11 2011 - 07:23:04 CDT)
  • Guenegou, Guillaume [ORDFR] (Thu Aug 11 2011 - 04:56:11 CDT)
• update selection every frame not working
  • Pawel Siuda (Wed Nov 28 2012 - 08:42:11 CST)
  • John Stone (Mon Nov 26 2012 - 15:51:14 CST)
  • Pawel Siuda (Mon Nov 26 2012 - 15:41:15 CST)
• update selection used in "animate write"
  • John Stone (Mon Sep 08 2014 - 09:55:55 CDT)
  • Axel Kohlmeyer (Mon Sep 08 2014 - 00:34:10 CDT)
  • Eric Smoll (Sun Sep 07 2014 - 23:43:05 CDT)
• Update structure on-the-fly
  • Josh (Mon Oct 16 2023 - 08:54:23 CDT)
  • Raman Preet Singh (Mon Oct 16 2023 - 02:18:14 CDT)
• Updated "Hull" source code for delaunay script...
  • John Stone (Mon Apr 24 2006 - 20:11:50 CDT)
• Updated APBS plugin for VMD available for testing...
  • John Stone (Thu Apr 28 2005 - 14:15:00 CDT)
• Updated Bonding Connectivity each frame
  • Axel Kohlmeyer (Tue Jul 13 2004 - 15:28:17 CDT)
  • John Stone (Tue Jul 13 2004 - 10:15:33 CDT)
  • Kenneth Smith (Tue Jul 13 2004 - 08:27:07 CDT)
• Updated plugins for VMD 1.8.1...
  • John Stone (Thu Oct 30 2003 - 14:46:09 CST)
• Updated plugins for VMD 1.8.2
  • John Stone (Mon Apr 19 2004 - 10:34:55 CDT)
• Updated plugins for VMD 1.8.x
  • John Stone (Fri Mar 05 2004 - 13:23:45 CST)
• Updated RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted...
  • John Stone (Fri Mar 15 2019 - 16:31:14 CDT)
• Updated VMD 1.9.2. Gromacs plugins posted for download
  • andrea spitaleri (Tue Apr 14 2015 - 01:46:02 CDT)
  • John Stone (Mon Apr 13 2015 - 16:36:25 CDT)
• Updated VMD Script Library
  • Jeff Ulrich (Wed Mar 05 1997 - 10:57:03 CST)
• Updated VMD-L archive page...
  • John Stone (Tue Nov 18 2003 - 13:10:07 CST)
• Updates
  • McGuire, Kelly (Sun Aug 05 2018 - 14:06:26 CDT)
• Updates in rmsdtt (Excel) and cluster (Xcluster) plugins
  • Luis Gracia (Fri Jan 21 2005 - 00:22:42 CST)
• Updating atom names/types in xyz-files
  • John Stone (Fri Sep 24 2004 - 10:57:41 CDT)
  • Pär Olsson (Fri Sep 24 2004 - 02:24:29 CDT)
• Updating atomselection from frame to frame
  • Cesar Luis Avila (Fri Mar 02 2007 - 08:59:48 CST)
  • Axel Kohlmeyer (Fri Mar 02 2007 - 08:27:07 CST)
  • Axel Kohlmeyer (Fri Mar 02 2007 - 07:32:00 CST)
  • Cesar Luis Avila (Fri Mar 02 2007 - 07:32:01 CST)
  • Jawahar Neelankatan (Fri Mar 02 2007 - 06:19:38 CST)
• Updating atomselections in every frame and write to a pdb
  • Monika Madhavi (Mon Feb 01 2016 - 22:15:55 CST)
  • Peter Freddolino (Mon Feb 01 2016 - 22:25:26 CST)
  • Peter Freddolino (Mon Feb 01 2016 - 21:21:28 CST)
  • Monika Madhavi (Mon Feb 01 2016 - 21:12:45 CST)
  • Peter Freddolino (Mon Feb 01 2016 - 20:51:30 CST)
  • Monika Madhavi (Mon Feb 01 2016 - 18:01:41 CST)
• updating cartoon representation in trajectory
  • John Stone (Sun Sep 14 2003 - 11:00:11 CDT)
  • Matthew C. Lee (Sun Sep 14 2003 - 00:27:52 CDT)
• Updating color_scale_bar_new.tcl
  • JOSE MANUEL ROMO HERRERA (Tue Nov 08 2005 - 13:19:08 CST)
• Updating colors
  • John Stone (Wed Apr 23 2003 - 15:30:28 CDT)
  • John Stone (Wed Apr 23 2003 - 15:24:57 CDT)
  • John Stone (Wed Apr 23 2003 - 15:01:05 CDT)
  • Paul Tangney (Tue Apr 22 2003 - 20:44:35 CDT)
• Updating colors at each trajectory step
  • John Stone (Mon Feb 24 2003 - 10:49:00 CST)
  • Paul Tangney (Sun Feb 23 2003 - 20:34:51 CST)
• Updating COLOURS for atoms
  • John Stone (Tue Jun 28 2005 - 19:26:28 CDT)
  • master mendez (Sat Jun 25 2005 - 02:24:08 CDT)
• updating DCD frames in python
  • Michael Kreim (Thu Jan 15 2009 - 03:30:55 CST)
  • Axel Kohlmeyer (Wed Jan 14 2009 - 11:11:45 CST)
  • Michael Kreim (Wed Jan 14 2009 - 09:55:06 CST)
• updating display of atoms in contact
  • Sergio Urahata (Mon Jul 10 2006 - 17:06:30 CDT)
  • Leonardo Trabuco (Mon Jul 10 2006 - 16:55:02 CDT)
  • Ting Wang (Mon Jul 10 2006 - 16:39:59 CDT)
• Updating selections....
  • John Stone (Thu Nov 18 2004 - 18:47:11 CST)
  • Luis Rosales (Thu Nov 18 2004 - 18:41:21 CST)
• Upgrade CUDA5.5 driver and vmd doesn't work anymore
  • Damiano Buratto (Mon Jan 27 2014 - 04:26:04 CST)
  • John Stone (Fri Jan 24 2014 - 13:55:35 CST)
  • Damiano Buratto (Fri Jan 24 2014 - 10:09:36 CST)
• upgrading vmd's nvidia component
  • Robert Wohlhueter (Thu Aug 05 2010 - 17:01:20 CDT)
  • Bob Wohlhueter (Thu Aug 05 2010 - 16:04:53 CDT)
  • John Stone (Thu Aug 05 2010 - 16:11:09 CDT)
• ureybradley and impropers in ffTK
  • JC Gumbart (Sat Jun 29 2013 - 07:55:40 CDT)
  • Darre Castell, Leonardo (Sat Jun 29 2013 - 08:01:38 CDT)
  • Darre Castell, Leonardo (Fri Jun 28 2013 - 11:52:21 CDT)
• Urgent---documents uploaded for you
  • John Stone (Tue Aug 13 2013 - 11:35:55 CDT)
• usage for the pacth 5DP (there is no information in the tutorial)
  • OZGE ENGIN (Sat Nov 08 2008 - 03:10:17 CST)
• usage for the patch 5DP (there is no information in the tutorial)
  • OZGE ENGIN (Sat Nov 08 2008 - 03:17:41 CST)
  • OZGE ENGIN (Fri Nov 07 2008 - 19:04:35 CST)
• Usage of the Orient package
  • Yogesh Sharma (Mon Dec 06 2021 - 14:08:28 CST)
  • sunyeping (Tue Mar 07 2017 - 19:49:31 CST)
  • Bennion, Brian (Tue Mar 07 2017 - 12:07:27 CST)
  • sunyeping (Mon Mar 06 2017 - 21:32:25 CST)
• Use "Metal complexes/FeS-clusters" in VMD paratool
  • John Stone (Wed Feb 01 2012 - 23:21:49 CST)
  • Jiajian Li (Wed Jan 18 2012 - 16:01:10 CST)
• Use AMBER files in CG-builder
  • John Stone (Tue Jul 09 2013 - 16:32:44 CDT)
  • Nathaniel Eagan (Mon Jul 01 2013 - 16:21:14 CDT)
• use animatepdbs.tcl to include APBS potential maps
  • Axel Kohlmeyer (Mon Jun 11 2007 - 11:22:01 CDT)
  • Cesar Millan (Sun Jun 10 2007 - 22:09:27 CDT)
  • Axel Kohlmeyer (Sun Jun 10 2007 - 15:00:58 CDT)
  • Cesar Millan (Sat Jun 09 2007 - 22:48:02 CDT)
• use configure.options
  • Anirban Ghosh (Mon Nov 17 2008 - 22:34:14 CST)
  • Chen Chen (Mon Nov 17 2008 - 21:37:24 CST)
  • jani sahil (Mon Nov 17 2008 - 21:27:58 CST)
  • Chen Chen (Mon Nov 17 2008 - 20:53:14 CST)
  • John Stone (Mon Nov 17 2008 - 21:06:12 CST)
  • John Stone (Mon Nov 17 2008 - 20:28:36 CST)
  • Chen Chen (Mon Nov 17 2008 - 19:34:24 CST)
• use gelato render with VMD 1.8.7 for movie
  • John Stone (Fri Dec 03 2010 - 11:55:24 CST)
  • ABEL Stephane 175950 (Thu Dec 02 2010 - 06:22:36 CST)
• Use Movie Maker Plugin in Script
  • John Stone (Mon Dec 10 2012 - 11:45:42 CST)
  • John Stone (Thu Dec 06 2012 - 10:00:15 CST)
  • Axel Kohlmeyer (Thu Dec 06 2012 - 07:02:33 CST)
  • Aaron Taudt (Wed Dec 05 2012 - 08:40:46 CST)
• Use of coarse grain plugin
  • Kirby Vandivort (Tue Feb 28 2012 - 16:53:50 CST)
  • Dudo (Wed Feb 08 2012 - 18:47:01 CST)
  • kirtana S (Wed Feb 08 2012 - 17:35:26 CST)
• Use of CUDA with AMD GPU
  • Harish Srinivasan (Tue Dec 06 2016 - 23:52:56 CST)
  • John Stone (Tue Dec 06 2016 - 23:24:23 CST)
  • Harish Srinivasan (Tue Dec 06 2016 - 22:59:44 CST)
• Use of parmtool plugin
  • Christian Wohlschlager (Mon Sep 13 2010 - 01:38:01 CDT)
• Use of RBCG to convert multiple frames from atomistic trajectory to Coarse grained
  • Axel Kohlmeyer (Tue Nov 01 2011 - 17:09:50 CDT)
  • rohan uttarwar (Tue Nov 01 2011 - 16:17:08 CDT)
• use of spring tcl script
  • Falgun Shah (Thu Mar 05 2009 - 20:49:30 CST)
• Use of topotools
  • Axel Kohlmeyer (Thu Sep 20 2012 - 07:50:35 CDT)
  • kirtana S (Thu Sep 20 2012 - 00:13:47 CDT)
• use phantom with VMD
  • John Stone (Thu Sep 15 2005 - 11:45:30 CDT)
  • Hai-Jun Su (Tue Sep 13 2005 - 14:39:37 CDT)
  • Hai-Jun Su (Sun Sep 11 2005 - 11:22:44 CDT)
• use variable in atomselect
  • Ajasja LjubetiÄ� (Sat May 28 2011 - 02:24:03 CDT)
  • Axel Kohlmeyer (Fri May 27 2011 - 17:05:16 CDT)
  • Ajasja LjubetiÄ� (Fri May 27 2011 - 16:28:34 CDT)
  • dhacademic (Fri May 27 2011 - 14:55:26 CDT)
• Use variable in atomselect command
  • Brian Kim (Tue Feb 07 2012 - 19:11:27 CST)
  • Brian Kim (Tue Feb 07 2012 - 16:40:24 CST)
  • Axel Kohlmeyer (Tue Feb 07 2012 - 16:15:55 CST)
  • Brian Kim (Tue Feb 07 2012 - 15:16:17 CST)
• Use VMD Graphics Primitives to Construct Stilized Cyclodextrins
  • John Stone (Fri Nov 18 2005 - 11:06:36 CST)
  • rossi_at_york.cuny.edu (Thu Nov 17 2005 - 16:31:01 CST)
• Use VMD Primitives to Construct Stilized Cyclodextrins
  • rossi_at_york.cuny.edu (Thu Nov 17 2005 - 07:14:02 CST)
• Use VMD to produce images and videos to sell
  • Henrique Fernandes (Wed Oct 19 2022 - 12:22:19 CDT)
  • John Stone (Tue Oct 18 2022 - 15:12:00 CDT)
  • Diego Gomes (Tue Oct 18 2022 - 08:29:18 CDT)
  • Henrique Fernandes (Sun Oct 16 2022 - 10:02:52 CDT)
• Use VMDOSPRAYMPI env variable and OSPray render method
  • Chris Taylor (Mon Apr 18 2022 - 21:17:08 CDT)
  • Chris Taylor (Sun Apr 17 2022 - 02:09:04 CDT)
• use volmap tool for probability density map
  • Grzegorz Wieczorek (Mon Dec 03 2012 - 03:43:40 CST)
  • Liyu Jin (Leo) (Sun Dec 02 2012 - 16:36:12 CST)
  • Liyu Jin (Leo) (Sun Dec 02 2012 - 06:31:40 CST)
  • Liyu Jin (Leo) (Sun Dec 02 2012 - 06:26:48 CST)
  • Grzegorz Wieczorek (Sun Dec 02 2012 - 04:24:29 CST)
  • John Stone (Sat Dec 01 2012 - 22:36:22 CST)
  • Liyu Jin (Leo) (Sat Dec 01 2012 - 07:56:30 CST)
• User colors and povray
  • Alexander Peyser (Wed Feb 23 2005 - 16:01:19 CST)
  • John Stone (Wed Feb 23 2005 - 15:54:48 CST)
  • apeyser_at_newssun.med.miami.edu (Wed Feb 23 2005 - 15:45:26 CST)
  • John Stone (Wed Feb 23 2005 - 15:15:17 CST)
  • apeyser_at_newssun.med.miami.edu (Tue Feb 22 2005 - 13:34:47 CST)
• User defined charges with PMEpot
  • Axel Kohlmeyer (Fri Jun 13 2008 - 07:34:42 CDT)
  • Axel Kohlmeyer (Thu Jun 12 2008 - 22:24:15 CDT)
  • Nicolas (Thu Jun 12 2008 - 23:08:24 CDT)
  • Nicolas Sapay (Thu Jun 12 2008 - 18:24:57 CDT)
• User defined command order
  • Stephanie Teich-McGoldrick (Mon Sep 30 2013 - 22:08:53 CDT)
  • Axel Kohlmeyer (Sat Sep 28 2013 - 04:27:12 CDT)
  • Stephanie Teich-McGoldrick (Fri Sep 27 2013 - 19:42:43 CDT)
• user field
  • Axel Kohlmeyer (Mon Sep 28 2009 - 09:28:03 CDT)
  • Sun Yicheng (Mon Sep 28 2009 - 08:36:34 CDT)
  • Axel Kohlmeyer (Fri Aug 28 2009 - 16:14:00 CDT)
  • Urahata (Fri Aug 28 2009 - 10:40:43 CDT)
• user field memory demand
  • Jérôme Hénin (Mon Mar 13 2006 - 11:02:36 CST)
  • Leandro Martínez (Mon Mar 13 2006 - 10:29:42 CST)
  • John Stone (Mon Mar 13 2006 - 10:24:21 CST)
  • Leandro Martínez (Mon Mar 13 2006 - 08:10:16 CST)
• User-defined coloring
  • Bassam Haddad (Thu Jun 06 2019 - 15:41:21 CDT)
  • Mustafa Tekpinar (Wed Jun 05 2019 - 10:55:24 CDT)
• user-defined movie
  • John Stone (Wed Jun 14 2006 - 16:58:09 CDT)
  • Ting Wang (Wed Jun 14 2006 - 16:44:22 CDT)
• Userani.tcl script jumps frame after no play
  • sperez14_at_us.es (Wed Aug 15 2018 - 09:26:52 CDT)
• Using "membrane package" with different lipid molecules
  • Peter Freddolino (Fri Feb 02 2007 - 09:37:01 CST)
  • Lechuga, Javier (Fri Feb 02 2007 - 09:18:06 CST)
• Using "orient" - Vectors reversing direction?
  • Meander Myself (Thu Nov 20 2014 - 09:26:27 CST)
• using atomselect to write a set of atoms and not some residue whose residue numbers are in a list
  • John Stone (Mon Jun 15 2009 - 10:38:18 CDT)
  • maria goranovic (Mon Jun 15 2009 - 10:31:26 CDT)
• Using Automatic PSF Builder for Novel Residues
  • Brianna McIntosh (Thu Jul 30 2015 - 17:32:56 CDT)
• Using bigdcd
  • Joshua Skootsky (Thu May 15 2014 - 19:55:26 CDT)
  • Ozgun Kirker (Student) (Thu May 15 2014 - 18:40:57 CDT)
• Using bigdcd and .tcl scripts
  • Vermaas, Joshua (Wed Nov 27 2019 - 17:19:17 CST)
  • crockett c.h. (chc2g16) (Wed Nov 27 2019 - 09:23:39 CST)
• Using bigdcd for an already written script
  • Morgan, Brittany (Mon Jul 06 2015 - 07:43:15 CDT)
  • Monika Madhavi (Fri Jul 03 2015 - 05:39:57 CDT)
• Using BigDCD on Simulation Files Located on Mapped Network Drive
  • Georcki Ropon (Thu Oct 13 2022 - 14:31:37 CDT)
  • Norbert Straeter (Wed Oct 12 2022 - 03:02:29 CDT)
  • Efthymiou, Christos (Tue Oct 11 2022 - 19:45:48 CDT)
  • Norbert Straeter (Tue Oct 11 2022 - 14:33:49 CDT)
  • Efthymiou, Christos (Tue Oct 11 2022 - 14:15:52 CDT)
  • Norbert Straeter (Tue Oct 11 2022 - 14:05:57 CDT)
  • Efthymiou, Christos (Tue Oct 11 2022 - 13:33:08 CDT)
• Using BigDCD to wrap, unwrap and animate a long MD trajectory
  • KK R (Wed Jul 15 2015 - 11:30:02 CDT)
  • John Stone (Tue Jul 14 2015 - 10:26:04 CDT)
  • KK R (Wed Jul 08 2015 - 12:52:47 CDT)
• Using Bigdcd with RMSD Trajectory tool in VMD
  • Ajasja LjubetiÄ� (Tue Aug 31 2010 - 05:42:16 CDT)
  • Dan J Martingano (Mon Aug 30 2010 - 14:33:29 CDT)
• using cionize
  • Shyno Mathew (Tue Mar 12 2013 - 17:44:55 CDT)
• Using class UIVR
  • John Stone (Tue Nov 24 2009 - 11:06:52 CST)
  • Dipesh Bhattarai (Tue Nov 24 2009 - 10:27:22 CST)
  • John Stone (Mon Nov 23 2009 - 17:15:49 CST)
  • Dipesh Bhattarai (Mon Nov 23 2009 - 10:59:57 CST)
• Using clustering tool
  • John Stone (Sun Apr 26 2009 - 23:10:24 CDT)
  • Andres Morales N (Fri Apr 24 2009 - 22:56:48 CDT)
• using cvs under Windows XP
  • Ben Chern (Mon Mar 31 2008 - 10:21:11 CDT)
  • Axel Kohlmeyer (Mon Mar 31 2008 - 09:37:54 CDT)
  • Ben Chern (Mon Mar 31 2008 - 08:31:31 CDT)
• Using Dipole Moment Watcher with Gromacs configurations and trajectories
  • Axel Kohlmeyer (Sat May 26 2012 - 16:19:26 CDT)
  • Andrew DeYoung (Sat May 26 2012 - 12:20:09 CDT)
• using fit_angle.py over a trajectory
  • maria goranovic (Fri Jan 13 2012 - 03:36:26 CST)
• using gimp for converting jpg, tga ... images to high quality eps files
  • Xiaogang Wang (Sat Feb 19 2005 - 15:49:05 CST)
  • Axel Kohlmeyer (Mon Feb 07 2005 - 06:31:44 CST)
  • Philip Fowler (Mon Feb 07 2005 - 03:46:07 CST)
  • Axel Kohlmeyer (Sat Feb 05 2005 - 04:58:35 CST)
  • Marc Q. Ma (Fri Feb 04 2005 - 14:58:58 CST)
• using Grace instead of Multiplot
  • John Stone (Wed Apr 04 2007 - 12:13:45 CDT)
  • Vlad Cojocaru (Wed Apr 04 2007 - 05:04:36 CDT)
• USING IED for essential dynamics in VMD
  • Axel Kohlmeyer (Tue Feb 01 2011 - 19:34:30 CST)
  • bharat gupta (Tue Feb 01 2011 - 18:38:39 CST)
• using IED interface in VMD 1.8.7 windows
  • bharat gupta (Tue Feb 01 2011 - 02:51:45 CST)
• using inorganic builder for amorphous silica
  • Diez Fernandez, Amanda (Thu May 11 2017 - 07:35:11 CDT)
• Using LES with solvated, ionized protein
  • Jim Phillips (Tue Dec 28 2010 - 16:52:12 CST)
  • Jacqueline Cawthray (Sun Dec 12 2010 - 18:38:18 CST)
• Using Magellan Spacemouse with VMD
  • John Stone (Tue Nov 26 2002 - 14:49:38 CST)
  • srtlscao (Mon Nov 25 2002 - 08:38:46 CST)
• using martini forcefields for DNA in NAMD
  • Parth Chaturvedi (Mon Jul 01 2019 - 18:34:51 CDT)
• Using MDFF 0.6 in VMD 1.9.4a
  • Conrad F Li (Fri Aug 21 2020 - 11:19:41 CDT)
• Using Measure SASA in NAMD Simulation
  • John Stone (Mon Apr 16 2012 - 23:39:24 CDT)
  • Ajith Rathnaweera Rajapaksha Mudalige (Mon Apr 16 2012 - 18:54:32 CDT)
• using min. image. conven. for transport properties
  • Papan S (Wed Apr 04 2012 - 23:06:18 CDT)
  • Axel Kohlmeyer (Wed Apr 04 2012 - 09:13:37 CDT)
  • Papan S (Wed Apr 04 2012 - 08:16:00 CDT)
• Using Molefacture plugin in batch mode
  • Enrico Martinez (Wed Sep 07 2022 - 08:53:25 CDT)
  • Peter Freddolino (Wed Sep 07 2022 - 07:52:54 CDT)
  • Enrico Martinez (Wed Sep 07 2022 - 02:44:47 CDT)
  • Peter Freddolino (Tue Sep 06 2022 - 16:42:35 CDT)
  • Enrico Martinez (Tue Sep 06 2022 - 03:22:44 CDT)
• Using more than 9 atom types for coloring method and visualizing half of a structure
  • Josh Vermaas (Fri Aug 08 2014 - 15:23:20 CDT)
  • Fikret Aydin (Fri Aug 08 2014 - 12:58:12 CDT)
• Using multiple CPUS
  • John Stone (Tue Jul 10 2007 - 20:26:32 CDT)
  • Axel Kohlmeyer (Mon Jul 09 2007 - 14:12:00 CDT)
  • SeongJun Heo (Mon Jul 09 2007 - 14:20:14 CDT)
• Using Multiseq for aligning a structure and a sequence
  • Arijit Ghosh (Wed Mar 04 2015 - 00:56:40 CST)
• Using NAMD Energy Plugin
  • Axel Kohlmeyer (Tue May 20 2008 - 07:42:39 CDT)
  • Peter Freddolino (Tue May 20 2008 - 08:12:50 CDT)
  • S.K. Ghosh (Tue May 20 2008 - 07:18:35 CDT)
• using NAMD with SPC water
  • Axel Kohlmeyer (Sat Oct 31 2009 - 14:23:13 CDT)
  • politr_at_huji.ac.il (Tue Oct 27 2009 - 11:12:21 CDT)
  • L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:54:56 CDT)
  • Axel Kohlmeyer (Mon Oct 26 2009 - 10:42:13 CDT)
  • Axel Kohlmeyer (Mon Oct 26 2009 - 10:08:08 CDT)
  • L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:24:19 CDT)
  • L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
  • Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
  • politr_at_huji.ac.il (Mon Oct 26 2009 - 07:48:26 CDT)
• Using namdEnergy from an external python script
  • Brian Radak (Thu Jan 16 2020 - 12:25:37 CST)
  • Ackad, Edward (Thu Jan 16 2020 - 10:05:10 CST)
  • PaweÅ‚ KÄ™dzierski (Thu Jan 16 2020 - 03:36:20 CST)
  • Adupa Vasista (Wed Jan 15 2020 - 23:08:49 CST)
  • Ackad, Edward (Wed Jan 15 2020 - 13:23:09 CST)
• Using namdenergy in batch mode to compute dihedral energies
  • Peter Freddolino (Mon Apr 14 2008 - 10:24:53 CDT)
  • Ben Chern (Sun Apr 13 2008 - 20:49:26 CDT)
  • Irene Newhouse (Sun Apr 13 2008 - 11:47:03 CDT)
  • Irene Newhouse (Thu Apr 10 2008 - 21:17:08 CDT)
  • Peter Freddolino (Thu Apr 10 2008 - 17:05:18 CDT)
  • Irene Newhouse (Thu Apr 10 2008 - 15:15:36 CDT)
• using namdenergy with amber prmtop file
  • Peter Freddolino (Thu Jan 04 2007 - 13:05:19 CST)
  • Nitin Bhardwaj (Thu Jan 04 2007 - 13:02:06 CST)
  • Peter Freddolino (Wed Jan 03 2007 - 20:09:29 CST)
  • Nitin Bhardwaj (Wed Jan 03 2007 - 18:06:20 CST)
• Using namdenergy without cutoffs?
  • poker_at_physics.usyd.edu.au (Tue Mar 11 2008 - 20:05:46 CDT)
  • Peter Freddolino (Tue Mar 11 2008 - 07:45:44 CDT)
  • poker_at_physics.usyd.edu.au (Tue Mar 11 2008 - 01:09:20 CDT)
• Using namdplot from the command line
  • John Stone (Thu Sep 28 2006 - 14:18:48 CDT)
  • JC Gumbart (Thu Sep 28 2006 - 14:05:03 CDT)
  • Nicolas SAPAY (Thu Sep 28 2006 - 12:41:03 CDT)
• using namdstats.tcl
  • John Stone (Sat Apr 11 2015 - 13:13:26 CDT)
  • oguz gurbulak (Sat Apr 11 2015 - 04:51:38 CDT)
  • John Stone (Fri Apr 10 2015 - 16:31:23 CDT)
  • oguz gurbulak (Wed Apr 08 2015 - 01:50:47 CDT)
  • John Stone (Mon Apr 06 2015 - 10:17:46 CDT)
  • oguz gurbulak (Sun Apr 05 2015 - 16:54:50 CDT)
• using paratool
  • Jan Saam (Fri Feb 10 2006 - 18:06:31 CST)
  • L. Michel Espinoza-Fonseca (Fri Feb 10 2006 - 17:45:32 CST)
• Using pbc wrap with bigdcd
  • Thomas Griffiths (Fri Sep 16 2016 - 23:28:34 CDT)
  • Thomas Griffiths (Thu Sep 15 2016 - 20:56:49 CDT)
• Using psfgen with long atom names (How to prepare PDB file?)
  • Vincent Leroux (Wed Jun 13 2012 - 10:08:18 CDT)
  • Ajasja LjubetiÄ� (Wed Jun 13 2012 - 05:41:27 CDT)
  • Ajasja LjubetiÄ� (Wed Jun 13 2012 - 05:33:27 CDT)
• Using Python
  • John Stone (Fri Feb 22 2002 - 12:59:19 CST)
  • Sam Ansari (Fri Feb 22 2002 - 07:59:02 CST)
• Using python interpreter with VMD
  • Giacomo Fiorin (Tue Dec 19 2017 - 07:33:26 CST)
  • sumit nagar (Mon Dec 18 2017 - 23:58:00 CST)
  • John Stone (Tue Dec 19 2017 - 00:02:04 CST)
  • sumit nagar (Mon Dec 18 2017 - 23:46:43 CST)
• Using QwikMD with latest CHARMM36 force fields
  • Andreas Kukol (Sat Apr 17 2021 - 03:58:22 CDT)
• Using radial coloring method from user-defined center
  • Miguel Caro (Tue Mar 27 2018 - 02:32:59 CDT)
  • Vermaas, Joshua (Mon Mar 26 2018 - 13:59:16 CDT)
  • Miguel Caro (Mon Mar 26 2018 - 10:09:27 CDT)
• Using regular expressions on tcl atomselection
  • Axel Kohlmeyer (Thu May 31 2007 - 17:17:25 CDT)
  • Leonardo Trabuco (Thu May 31 2007 - 18:01:55 CDT)
  • Cesar Luis Avila (Thu May 31 2007 - 17:45:32 CDT)
• Using RMSD for individual residues script (as seen in the NAMD tutorial) and bigdcd
  • Ashar Malik (Mon Dec 09 2019 - 21:43:23 CST)
  • crockett c.h. (chc2g16) (Mon Dec 09 2019 - 17:28:46 CST)
• Using RMSD in colvar
  • John Stone (Mon May 03 2010 - 14:47:55 CDT)
  • Stefan Franzen (Mon May 03 2010 - 08:48:10 CDT)
• Using RMSD without loading all structures?
  • Gustavo Seabra (Wed May 03 2006 - 13:12:40 CDT)
  • John Stone (Wed May 03 2006 - 12:38:43 CDT)
  • Gustavo Seabra (Wed May 03 2006 - 11:55:25 CDT)
• Using RMSDTT in a script and aligning volume data
  • Axel Kohlmeyer (Fri Mar 07 2008 - 10:23:46 CST)
  • Ignacio Fernández Galván (Fri Mar 07 2008 - 03:35:55 CST)
• using scrpt making movies in Windows
  • John Stone (Mon Oct 10 2005 - 10:10:58 CDT)
  • Xinyu(cindy) Li (Mon Oct 10 2005 - 10:02:11 CDT)
• Using Solvate Script
  • John Stone (Mon Aug 25 2003 - 13:27:45 CDT)
  • Raymond C. Fort Jr. (Mon Aug 25 2003 - 13:30:31 CDT)
• Using Tcl functions in a C-plugin
  • Olaf Lenz (Mon Nov 02 2009 - 14:57:49 CST)
  • John Stone (Mon Nov 02 2009 - 14:08:27 CST)
  • Olaf Lenz (Mon Nov 02 2009 - 07:29:24 CST)
• using tcl variables in representation gui
  • John Stone (Wed Jul 14 2010 - 09:32:33 CDT)
  • Robert Wohlhueter (Wed Jul 14 2010 - 09:22:09 CDT)
• Using the -updatesel parameter in namdenergy
  • Atreya Dey (Fri Nov 20 2015 - 01:49:58 CST)
• using the beta and occupancy columns as state variables
  • Axel Kohlmeyer (Tue Oct 28 2008 - 09:17:03 CDT)
  • Brian Kidd (Tue Oct 28 2008 - 00:42:41 CDT)
• Using the chirality and cispeptide plugins with "vmd -dispdev text"
  • nealec (Fri Dec 12 2014 - 23:55:20 CST)
  • John Stone (Fri Dec 12 2014 - 20:33:04 CST)
  • nealec (Fri Dec 12 2014 - 20:17:09 CST)
• using the colvar module in VMD within a tcl loop through trajectory frames
  • Josh Vermaas (Mon Apr 27 2015 - 10:58:33 CDT)
  • Vlad Cojocaru (Mon Apr 27 2015 - 11:24:46 CDT)
  • Vlad Cojocaru (Mon Apr 27 2015 - 09:27:02 CDT)
• Using the MovieMaker
  • John Stone (Thu Feb 24 2011 - 20:42:33 CST)
  • Axel Kohlmeyer (Thu Feb 24 2011 - 16:57:19 CST)
  • Phelan Jr., Frederick R. Dr. (Thu Feb 24 2011 - 15:52:28 CST)
• Using threads in VMD's tcl
  • Víctor (Tue Jan 17 2012 - 17:19:48 CST)
  • Axel Kohlmeyer (Tue Jan 17 2012 - 17:17:25 CST)
  • Víctor (Tue Jan 17 2012 - 16:03:38 CST)
  • Ajasja LjubetiÄ� (Tue Jan 17 2012 - 12:40:13 CST)
  • Axel Kohlmeyer (Tue Jan 17 2012 - 11:05:20 CST)
  • Víctor (Tue Jan 17 2012 - 10:04:57 CST)
• Using Tools (grab, tug, etc)
  • Marcos Ackel (Sun Oct 14 2012 - 12:42:38 CDT)
  • John Stone (Tue Oct 02 2012 - 16:56:55 CDT)
  • Marcos Ackel (Wed Sep 26 2012 - 15:43:19 CDT)
  • John Stone (Tue Sep 25 2012 - 16:40:49 CDT)
  • Marcos Ackel (Mon Sep 24 2012 - 18:40:35 CDT)
  • Marcos Ackel (Thu Sep 20 2012 - 22:23:02 CDT)
  • John Stone (Thu Sep 20 2012 - 16:55:13 CDT)
  • Marcos Ackel (Wed Sep 19 2012 - 20:14:01 CDT)
  • Marcos Ackel (Tue Sep 18 2012 - 15:17:01 CDT)
  • John Stone (Tue Sep 18 2012 - 14:40:12 CDT)
  • Marcos Ackel (Mon Sep 17 2012 - 13:53:51 CDT)
• Using topotools with no VMD display
  • Michael Doig (Tue May 12 2015 - 07:35:33 CDT)
  • Axel Kohlmeyer (Tue May 12 2015 - 08:07:24 CDT)
• using topotools: error in identifying atoms and dihedrals
  • Axel Kohlmeyer (Thu Jan 15 2015 - 05:10:10 CST)
  • Nathan K Houtz (Wed Jan 14 2015 - 16:18:42 CST)
• using trackers
  • John Stone (Wed May 24 2000 - 09:54:10 CDT)
  • Kimberly Ann Foster (Tue May 23 2000 - 16:09:40 CDT)
• Using two color scales in one scene
  • John Stone (Thu Oct 13 2011 - 14:33:52 CDT)
  • Robert Johnson (Thu Oct 13 2011 - 14:23:02 CDT)
• Using variables inside Atomselect
  • Ajasja LjubetiÄ� (Tue Feb 07 2017 - 08:35:38 CST)
  • Udaya Dahal (Tue Feb 07 2017 - 08:41:46 CST)
  • Ashar Malik (Tue Feb 07 2017 - 08:15:44 CST)
  • Jérôme Hénin (Tue Feb 07 2017 - 08:03:21 CST)
  • Udaya Dahal (Tue Feb 07 2017 - 07:20:08 CST)
• using VMD 1.8.7 on a Mac
  • daniel aguayo (Tue Aug 25 2009 - 12:53:02 CDT)
  • Robert Brunner (Tue Aug 25 2009 - 12:00:11 CDT)
  • John Stone (Tue Aug 25 2009 - 10:34:02 CDT)
  • Joshua D. Moore (Mon Aug 24 2009 - 21:49:10 CDT)
  • Carolyn Phillips (Mon Aug 24 2009 - 18:24:36 CDT)
  • John Stone (Mon Aug 24 2009 - 15:42:49 CDT)
  • Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
  • John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
  • Carolyn Phillips (Sun Aug 23 2009 - 15:13:40 CDT)
• Using VMD for non-atomic simulations?
  • John Stone (Wed Mar 03 2004 - 10:03:13 CST)
  • Nguyen Hoang Phuong (Wed Mar 03 2004 - 06:21:57 CST)
  • Olaf Lenz (Wed Mar 03 2004 - 03:51:39 CST)
• Using VMD from a Chrome Web Browser
  • Leddin, Emmett (Sat May 07 2022 - 00:52:33 CDT)
  • manuel mourato (Fri May 06 2022 - 18:00:59 CDT)
  • John Stone (Fri May 06 2022 - 11:53:09 CDT)
  • manuel mourato (Fri May 06 2022 - 11:49:41 CDT)
  • John Stone (Fri May 06 2022 - 09:06:39 CDT)
  • manuel mourato (Fri May 06 2022 - 06:23:59 CDT)
• Using VMD in Java application
  • Luis Omar Alvarez Mures (Tue Jun 07 2016 - 07:40:30 CDT)
• Using VMD just to plot some coordinates from a mathematical/geometrical model
  • John Stone (Tue Jun 26 2007 - 15:19:17 CDT)
  • Arneh Babakhani (Sat Jun 23 2007 - 10:29:11 CDT)
  • Axel Kohlmeyer (Sat Jun 23 2007 - 09:23:20 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 20:04:40 CDT)
  • John Stone (Fri Jun 22 2007 - 17:51:59 CDT)
  • Arneh Babakhani (Fri Jun 22 2007 - 17:51:35 CDT)
• Using VMD on Redhat 7.0
  • John Stone (Wed Nov 15 2000 - 11:29:07 CST)
• using vmd to apply symmetry operators part 2
  • Tristan Croll (Sat Sep 20 2014 - 03:17:42 CDT)
  • Bennion, Brian (Thu Sep 18 2014 - 17:21:43 CDT)
• using vmd to apply symmetry transformations
  • Bennion, Brian (Fri Jan 13 2012 - 11:06:27 CST)
  • John Stone (Fri Jan 13 2012 - 10:58:08 CST)
  • Bennion, Brian (Fri Jan 13 2012 - 09:21:39 CST)
• Using VMD to edit dynamics output
  • Barry Isralewitz (Mon Oct 02 2000 - 01:07:39 CDT)
  • Justin Gullingsrud (Mon Oct 02 2000 - 00:22:25 CDT)
  • David Chalmers (Sun Oct 01 2000 - 22:47:14 CDT)
• Using VMD to overlay structures
  • Mikolai Fajer (Thu Aug 25 2005 - 07:09:33 CDT)
  • Kara Di Giorgio (Mon Aug 22 2005 - 14:11:22 CDT)
  • John Stone (Mon Aug 22 2005 - 11:11:44 CDT)
  • Kara Di Giorgio (Fri Aug 19 2005 - 16:26:32 CDT)
• Using VMD to overlay structures (Mikolai Fajer)
  • Peter Schellenberg (Sun Aug 28 2005 - 05:28:29 CDT)
• Using VMD to plot coordination number of solvated ion v/s time
  • skolev_at_mnet.bg (Fri Mar 02 2012 - 12:33:57 CST)
  • Ana Celia Vila Verde (Fri Mar 02 2012 - 10:15:23 CST)
  • skolev_at_mnet.bg (Fri Mar 02 2012 - 09:33:07 CST)
• using vmd to view gromacs trajectory
  • Axel Kohlmeyer (Thu Apr 14 2011 - 11:43:36 CDT)
  • bharat gupta (Thu Apr 14 2011 - 10:20:29 CDT)
• Using VMD with Chromium
  • Stewart Dickson (Wed May 19 2004 - 11:22:54 CDT)
  • Brian Dotson (Wed Mar 03 2004 - 07:22:01 CST)
  • Cesar Delgado (Tue Mar 02 2004 - 19:26:22 CST)
  • John Stone (Tue Mar 02 2004 - 09:56:59 CST)
  • Brian Dotson (Tue Mar 02 2004 - 06:12:42 CST)
  • John Stone (Mon Mar 01 2004 - 09:51:04 CST)
  • Brian Dotson (Mon Mar 01 2004 - 06:59:34 CST)
• using VMD with LAMMPS
  • John Stone (Wed Aug 10 2005 - 14:24:22 CDT)
  • Jaime Sanchez (Wed Aug 10 2005 - 13:59:40 CDT)
• Using VMD/NAMD to construct Cyclodextrins using Chamm topologies
  • Sam Wallace (Sun Jun 12 2011 - 21:34:17 CDT)
• Using VMDPLUGIN_register_tcl
  • John Stone (Wed Oct 18 2006 - 13:14:01 CDT)
  • Axel Kohlmeyer (Wed Oct 18 2006 - 11:49:55 CDT)
  • Axel Kohlmeyer (Wed Oct 18 2006 - 11:52:36 CDT)
  • Miller, Patrick (Wed Oct 18 2006 - 09:24:21 CDT)
• Using VolMap for center of mass
  • amin sagar (Mon Aug 10 2020 - 11:16:29 CDT)
• Using VolMap tool for charge density visualization
  • Bob Johnson (Fri Jun 01 2007 - 09:59:47 CDT)
• using vslab in vmd
  • Anjela Manandhar (Mon Aug 15 2016 - 09:45:56 CDT)
  • Nuno Sousa Cerqueira (Fri Aug 12 2016 - 15:25:30 CDT)
  • John Stone (Thu Aug 11 2016 - 15:45:31 CDT)
  • Anjela Manandhar (Thu Aug 11 2016 - 10:56:54 CDT)
• Using writelammpsdata in 1.9.4
  • Axel Kohlmeyer (Tue Mar 02 2021 - 20:49:54 CST)
  • John Stone (Tue Mar 02 2021 - 20:52:20 CST)
  • Axel Kohlmeyer (Tue Mar 02 2021 - 20:05:55 CST)
  • Robert Chan-Jobe (Tue Mar 02 2021 - 19:11:58 CST)
• using xtc file to generate pdb's
  • Bogdan Costescu (Wed Dec 28 2011 - 07:01:39 CST)
  • Axel Kohlmeyer (Tue Dec 27 2011 - 17:32:59 CST)
  • J. Matthew Franklin (Tue Dec 27 2011 - 15:38:23 CST)
• util
  • Peter Freddolino (Fri Sep 28 2007 - 16:46:40 CDT)
  • Peter Freddolino (Fri Sep 28 2007 - 16:39:56 CDT)
• Valbond and NAMD
  • zoran (Thu Apr 16 2015 - 09:37:42 CDT)
  • Jérôme Hénin (Thu Apr 16 2015 - 09:21:25 CDT)
  • zoran (Thu Apr 16 2015 - 07:11:37 CDT)
• Valence bond force field in NAMD
  • Axel Kohlmeyer (Thu Apr 19 2012 - 12:53:26 CDT)
  • Ganesh Kamath (Thu Apr 19 2012 - 09:26:35 CDT)
• Van der Waal's radii of atoms
  • John Stone (Thu Jun 03 2004 - 17:00:32 CDT)
  • Andrew Dalke (Wed Jun 02 2004 - 23:21:30 CDT)
  • Vani Krishna (Wed Jun 02 2004 - 20:24:47 CDT)
• van der Waals volume
  • John Stone (Tue Feb 05 2002 - 19:29:42 CST)
  • Markus Laub (Mon Feb 04 2002 - 12:49:02 CST)
• variable atom count in XYZ multiframe trajectory
  • Axel Kohlmeyer (Tue Feb 01 2005 - 13:59:08 CST)
  • John Stone (Tue Feb 01 2005 - 11:12:55 CST)
  • Pascal Boulet (Tue Feb 01 2005 - 10:55:36 CST)
• variable atom number and dynamic bonds
  • Cosmin ROMAN (Wed May 05 2004 - 16:53:56 CDT)
  • Cosmin ROMAN (Wed May 05 2004 - 17:34:23 CDT)
  • John Stone (Wed May 05 2004 - 16:58:03 CDT)
  • John Stone (Wed May 05 2004 - 15:49:55 CDT)
  • Axel Kohlmeyer (Wed May 05 2004 - 13:22:24 CDT)
  • Cosmin ROMAN (Wed May 05 2004 - 10:55:19 CDT)
• variable atoms visualization
  • Axel Kohlmeyer (Thu Jun 27 2013 - 01:15:49 CDT)
  • amit kunte (Wed Jun 26 2013 - 23:28:17 CDT)
• Variable number of atoms in xyz file
  • Axel Kohlmeyer (Tue Apr 24 2007 - 09:21:45 CDT)
  • Peter Freddolino (Tue Apr 24 2007 - 10:04:40 CDT)
  • Ignacio Fernández Galván (Tue Apr 24 2007 - 02:58:20 CDT)
• Variable number of atoms in XYZ file format
  • John Stone (Tue Aug 03 2004 - 14:57:35 CDT)
  • Travis DePuy (Tue Aug 03 2004 - 14:43:51 CDT)
• Variable number of steps in run command?
  • David Cohen-Tanugi (Tue Jan 15 2013 - 10:30:55 CST)
• variable particle size
  • Axel Kohlmeyer (Sat Jun 29 2013 - 09:59:54 CDT)
  • Solen (Sat Jun 29 2013 - 09:57:20 CDT)
  • Olaf Lenz (Tue Jun 18 2013 - 01:55:17 CDT)
  • Axel Kohlmeyer (Fri Jun 14 2013 - 00:21:33 CDT)
  • Solen (Thu Jun 13 2013 - 23:01:19 CDT)
• variables from VMD to psfgen
  • L. Michel Espinoza-Fonseca (Mon Feb 11 2008 - 18:22:49 CST)
  • Thomas C. Bishop (Mon Feb 11 2008 - 17:28:12 CST)
• VASP CHGCAR
  • John Stone (Thu Feb 21 2008 - 17:22:36 CST)
  • Axel Kohlmeyer (Thu Feb 21 2008 - 17:18:50 CST)
  • Wesley Smith (Thu Feb 21 2008 - 17:10:28 CST)
  • Wesley Smith (Thu Feb 21 2008 - 17:25:42 CST)
  • Axel Kohlmeyer (Thu Feb 21 2008 - 15:35:07 CST)
  • Wesley Smith (Thu Feb 21 2008 - 14:12:05 CST)
• VASP crystal structure visualisation
  • Axel Kohlmeyer (Fri Nov 26 2010 - 16:11:41 CST)
  • Axel Kohlmeyer (Thu Nov 25 2010 - 17:10:04 CST)
  • Ajasja LjubetiÄ� (Thu Nov 25 2010 - 14:57:13 CST)
  • Ajasja LjubetiÄ� (Thu Nov 25 2010 - 14:14:58 CST)
  • Germain Salvato Vallverdu (Thu Nov 25 2010 - 08:32:11 CST)
  • Germain Salvato Vallverdu (Thu Nov 25 2010 - 06:41:35 CST)
• VASP plugins
  • Axel Kohlmeyer (Thu Aug 03 2006 - 09:42:01 CDT)
  • Jennifer Lardge (Thu Aug 03 2006 - 07:21:42 CDT)
• vasp POSCAR plugin
  • John Stone (Sun Sep 19 2010 - 19:26:47 CDT)
  • Tawhid Ezaz (Tue Sep 14 2010 - 17:36:00 CDT)
• VDM and two SpaceNavigators
  • John Stone (Thu Mar 31 2016 - 10:27:56 CDT)
  • Jesper Lykkegaard Karlsen (Thu Mar 31 2016 - 04:33:46 CDT)
• vdna 2.0 for VMD
  • John Stone (Tue May 12 2009 - 16:04:44 CDT)
  • Thomas C. Bishop (Tue May 12 2009 - 15:08:26 CDT)
• VDW radii
  • John Stone (Thu Oct 03 2002 - 09:39:22 CDT)
  • ran friedman (Thu Oct 03 2002 - 09:33:30 CDT)
  • Sanjeev B.S. (Thu Jun 13 2002 - 04:51:42 CDT)
• VDW radii in input files
  • John Stone (Fri Oct 24 2003 - 19:27:32 CDT)
  • Ran Friedman (Wed Oct 08 2003 - 03:13:43 CDT)
  • John Stone (Tue Oct 07 2003 - 15:42:28 CDT)
  • John Stone (Tue Oct 07 2003 - 15:35:08 CDT)
  • Ran Friedman (Tue Oct 07 2003 - 10:47:50 CDT)
• VDW-radius-and-Interstitial-Space
  • Josh Vermaas (Tue Nov 10 2015 - 20:21:34 CST)
  • Chowdhury, Sanjib Chandra (Tue Nov 10 2015 - 19:10:18 CST)
• veclength
  • Justin Gullingsrud (Thu Feb 19 2004 - 12:45:52 CST)
  • John Stone (Mon Feb 16 2004 - 23:56:13 CST)
  • Juan Alfredo Freites (Mon Feb 16 2004 - 21:54:55 CST)
• vecsub command
  • Axel Kohlmeyer (Tue Jul 22 2008 - 11:48:31 CDT)
  • Schreiner Eduard (Tue Jul 22 2008 - 11:40:13 CDT)
  • Katherine Parra (Tue Jul 22 2008 - 11:03:42 CDT)
• VECSUB function
  • Justin Gullingsrud (Tue Mar 30 2004 - 17:53:44 CST)
  • Satyavani Vemparala (Tue Mar 30 2004 - 16:44:03 CST)
• vecsub: two vectors don't have the same size
  • Francesco Pietra (Fri Apr 16 2021 - 10:30:35 CDT)
  • Ashar Malik (Fri Apr 16 2021 - 05:31:31 CDT)
  • Francesco Pietra (Fri Apr 16 2021 - 04:36:38 CDT)
• vector
  • John Stone (Wed Jan 24 2007 - 12:19:36 CST)
  • Axel Kohlmeyer (Wed Jan 24 2007 - 10:26:55 CST)
  • Vivek Sharma (Wed Jan 24 2007 - 04:14:28 CST)
• Vector corresponding to the long axis
  • Peter Freddolino (Fri Jun 05 2009 - 19:53:16 CDT)
  • Navendu bhatnagar (Fri Jun 05 2009 - 17:26:16 CDT)
• vector flips
  • John Stone (Tue Jan 26 2021 - 00:18:09 CST)
  • Raul Araya (Mon Jan 11 2021 - 15:56:27 CST)
• vector passing through a point and parallel to z axis, TCL code
  • t.shivam_at_iitg.ernet.in (Thu Jan 04 2018 - 23:28:16 CST)
  • Rabeta Yeasmin (Thu Jan 04 2018 - 18:57:39 CST)
  • Rabeta Yeasmin (Wed Dec 20 2017 - 17:12:38 CST)
• vector summation
  • Axel Kohlmeyer (Wed Nov 22 2006 - 09:13:45 CST)
  • Myunggi Yi (Tue Nov 21 2006 - 16:38:54 CST)
• vectors box in .trr file
  • leila karami (Wed Apr 06 2011 - 02:49:24 CDT)
• Vega ZZ DCD trajectory crashes VMD
  • Ajasja LjubetiÄ� (Tue Nov 09 2010 - 06:56:26 CST)
  • Ajasja LjubetiÄ� (Tue Oct 19 2010 - 11:56:26 CDT)
  • John Stone (Tue Oct 19 2010 - 11:28:45 CDT)
  • John Stone (Tue Oct 19 2010 - 11:07:27 CDT)
  • Axel Kohlmeyer (Tue Oct 19 2010 - 11:02:34 CDT)
  • John Stone (Tue Oct 19 2010 - 10:39:50 CDT)
  • Ajasja LjubetiÄ� (Tue Oct 19 2010 - 09:21:44 CDT)
• veldcd file
  • John Stone (Sun Jan 15 2017 - 02:47:25 CST)
  • fatehi_at_eng.uk.ac.ir (Sat Jan 07 2017 - 06:30:21 CST)
  • fatehi_at_eng.uk.ac.ir (Thu Jan 05 2017 - 02:52:29 CST)
• velocities in trr
  • Axel Kohlmeyer (Wed Sep 10 2014 - 15:43:58 CDT)
  • John Stone (Wed Sep 10 2014 - 15:25:12 CDT)
  • Eric Smoll (Wed Sep 10 2014 - 15:03:39 CDT)
  • John Stone (Wed Sep 10 2014 - 14:45:09 CDT)
  • Eric Smoll (Wed Sep 10 2014 - 14:28:56 CDT)
• velocity array accessible for any loaded molecule?
  • JC Gumbart (Fri Nov 06 2015 - 08:13:56 CST)
  • John Stone (Fri Nov 06 2015 - 00:09:36 CST)
  • JC Gumbart (Thu Nov 05 2015 - 23:43:12 CST)
  • John Stone (Thu Nov 05 2015 - 20:13:06 CST)
  • JC Gumbart (Thu Nov 05 2015 - 19:56:46 CST)
• velocity arrow and calculation
  • Hojjat Behmadi (Tue Apr 14 2015 - 13:02:01 CDT)
• Velocity Auto Correlation
  • Goutham (Fri Sep 25 2009 - 02:10:04 CDT)
  • Axel Kohlmeyer (Thu Sep 24 2009 - 21:49:01 CDT)
  • Goutham (Thu Sep 24 2009 - 20:23:39 CDT)
  • Axel Kohlmeyer (Thu Sep 24 2009 - 09:30:33 CDT)
  • Goutham (Sun Sep 20 2009 - 15:23:09 CDT)
  • Axel Kohlmeyer (Sat Sep 19 2009 - 10:14:22 CDT)
  • Goutham (Fri Sep 18 2009 - 22:25:02 CDT)
  • Axel Kohlmeyer (Fri Sep 18 2009 - 16:18:44 CDT)
  • Goutham (Fri Sep 18 2009 - 15:52:44 CDT)
  • Axel Kohlmeyer (Fri Sep 18 2009 - 15:36:45 CDT)
  • Goutham (Fri Sep 18 2009 - 14:53:42 CDT)
• velocity calculations
  • John Stone (Wed Oct 15 2008 - 15:58:49 CDT)
  • Suman Chakrabarty (Wed Oct 15 2008 - 15:40:04 CDT)
  • John Stone (Wed Oct 15 2008 - 12:39:12 CDT)
  • Axel Kohlmeyer (Wed Oct 15 2008 - 11:20:33 CDT)
  • John Stone (Wed Oct 15 2008 - 11:11:02 CDT)
  • Ryan Pavlovicz (Wed Oct 15 2008 - 10:18:50 CDT)
• velocity IO with psfgen?
  • John Stone (Thu Feb 26 2015 - 10:24:36 CST)
  • Brian Radak (Thu Feb 26 2015 - 09:41:04 CST)
• velocity or force of water molecules
  • Ashar Malik (Wed Nov 26 2014 - 17:31:30 CST)
  • John Stone (Wed Nov 26 2014 - 16:51:32 CST)
  • sunyeping (Sun Nov 23 2014 - 19:29:50 CST)
• velocity profile
  • Mao Mao (Mon May 16 2011 - 10:45:55 CDT)
• Velocity storing in VMD
  • Maxim Belkin (Sun Mar 09 2014 - 12:52:16 CDT)
  • Maria Pikoula (Sun Mar 09 2014 - 11:59:20 CDT)
  • Maxim Belkin (Sun Mar 09 2014 - 11:47:45 CDT)
  • Maria Pikoula (Sun Mar 09 2014 - 11:36:48 CDT)
  • Maxim Belkin (Sun Mar 09 2014 - 11:05:43 CDT)
  • Maria Pikoula (Sun Mar 09 2014 - 08:28:42 CDT)
  • Maxim Belkin (Sun Mar 09 2014 - 03:21:22 CDT)
  • Maria Pikoula (Sat Mar 08 2014 - 18:52:56 CST)
  • Maria Pikoula (Sat Mar 08 2014 - 18:52:56 CST)
  • Maxim Belkin (Sat Mar 08 2014 - 10:50:07 CST)
  • Maria Pikoula (Sat Mar 08 2014 - 05:51:44 CST)
• version 1.8.7 for amd64 and cg tools
  • Francesco Pietra (Fri Nov 13 2009 - 00:02:43 CST)
  • John Stone (Thu Nov 12 2009 - 23:20:18 CST)
  • Francesco Pietra (Thu Nov 12 2009 - 23:15:31 CST)
• version 1.9.3
  • elham sattarinezhad (Fri May 12 2023 - 09:31:35 CDT)
• very high vdw and electrostatic energy for bulk urea molecules
  • Subrata Paul (Tue May 19 2015 - 01:04:43 CDT)
• very large pdb file
  • Jack Gundrum (Thu Feb 23 2006 - 12:13:24 CST)
  • Nuno R. L. Ferreira (Thu Feb 23 2006 - 11:51:45 CST)
  • John Stone (Thu Feb 23 2006 - 11:26:34 CST)
  • Jack Gundrum (Thu Feb 23 2006 - 11:09:39 CST)
• Very peculiar problem with bigdcd if not running interactively (post moved over from namd forum)
  • Gordon Wells (Mon Aug 20 2007 - 04:49:51 CDT)
  • Axel Kohlmeyer (Wed Aug 15 2007 - 10:47:46 CDT)
  • maria goranovic (Wed Aug 15 2007 - 04:09:32 CDT)
• Vibration
  • John Stone (Tue Feb 01 2005 - 12:57:20 CST)
  • Noriaki Okimoto (Tue Feb 01 2005 - 12:29:21 CST)
  • kr_at_isise.rl.ac.uk (Sat Jun 08 2002 - 02:56:39 CDT)
  • John Stone (Fri Jun 07 2002 - 14:27:39 CDT)
  • Nguyen Hoang Phuong (Fri Jun 07 2002 - 12:55:30 CDT)
  • John Stone (Fri Jun 07 2002 - 11:32:21 CDT)
  • Nguyen Hoang Phuong (Fri Jun 07 2002 - 10:13:54 CDT)
• Vibrational spectra script
  • Aashish Bhatt (Sat Aug 04 2018 - 03:59:48 CDT)
• vicinity analysis
  • Ramon Guixà (Fri Mar 31 2017 - 09:06:56 CDT)
  • Udit Aswal (Fri Mar 31 2017 - 06:49:36 CDT)
  • Ramon Guixà (Fri Mar 31 2017 - 05:05:50 CDT)
  • Udit Aswal (Fri Mar 31 2017 - 04:32:20 CDT)
  • Ramon Guixà (Fri Mar 31 2017 - 03:14:11 CDT)
  • Udit Aswal (Fri Mar 31 2017 - 02:03:59 CDT)
• video 360 vmd
  • John Stone (Fri Feb 23 2018 - 14:50:35 CST)
  • Laine Tereza (Fri Feb 23 2018 - 14:37:09 CST)
• Video Card
  • Michel Espinoza-Fonseca (Wed Nov 30 2005 - 03:12:48 CST)
  • Karsten Suhre (Wed Nov 30 2005 - 02:02:33 CST)
  • Mgr. Lubos Vrbka (Wed Nov 30 2005 - 01:12:51 CST)
  • Jerome Henin (Tue Nov 29 2005 - 14:00:55 CST)
  • Jindal Shah (Tue Nov 29 2005 - 10:24:35 CST)
• Video card compatibility
  • Stéphane Teletchéa (Wed Dec 21 2005 - 07:56:24 CST)
  • John Stone (Tue Dec 20 2005 - 14:54:02 CST)
  • Michael T. Davis (Tue Dec 20 2005 - 14:34:29 CST)
• Video card driver
  • Brian Bennion (Thu Aug 04 2005 - 17:05:05 CDT)
  • John Stone (Thu Aug 04 2005 - 14:12:49 CDT)
  • Bob Johnson (Thu Aug 04 2005 - 13:56:44 CDT)
• Video Card for VMD, 2D or 3D
  • John Stone (Sat Jan 12 2008 - 00:11:53 CST)
  • Stanley, Yemin Shi (Fri Jan 11 2008 - 18:30:59 CST)
• Video card query
  • Peter Freddolino (Thu Jul 05 2007 - 12:41:59 CDT)
  • Axel Kohlmeyer (Thu Jul 05 2007 - 09:42:37 CDT)
  • Ignacio Fernández Galván (Thu Jul 05 2007 - 02:34:12 CDT)
• video memory and volumetric data
  • John Stone (Fri Sep 28 2007 - 16:19:41 CDT)
  • Jim Fonseca (Fri Sep 28 2007 - 15:15:02 CDT)
• video streaming
  • Ramon Guixà (Thu Mar 30 2017 - 17:41:52 CDT)
  • Ramon Guixà (Thu Mar 30 2017 - 17:36:14 CDT)
  • John Stone (Thu Mar 30 2017 - 15:11:41 CDT)
  • Ramon Guixà (Thu Mar 30 2017 - 06:25:44 CDT)
  • Axel Kohlmeyer (Thu Mar 30 2017 - 06:01:19 CDT)
  • Ramon Guixà (Thu Mar 30 2017 - 05:23:31 CDT)
  • Vermaas, Joshua (Wed Mar 29 2017 - 11:47:52 CDT)
  • Ramon Guixà (Wed Mar 29 2017 - 05:02:37 CDT)
• VideoMach/personable Label/label by ResName
  • John Stone (Mon Aug 09 2004 - 23:27:28 CDT)
  • Shirley Li (Mon Aug 09 2004 - 21:03:33 CDT)
  • John Stone (Mon Aug 09 2004 - 16:10:23 CDT)
  • Shirley Li (Mon Aug 09 2004 - 14:53:32 CDT)
• videostream command?
  • John Stone (Sat Oct 10 2020 - 18:19:23 CDT)
  • Josh Vermaas (Sat Oct 10 2020 - 17:58:41 CDT)
• view only parts of the loaded volumetric data
  • Axel Kohlmeyer (Fri Nov 21 2008 - 05:01:21 CST)
  • Vlad Cojocaru (Fri Nov 21 2008 - 04:18:11 CST)
• View sidechains in VMD
  • Pawel Kedzierski (Tue Jan 16 2018 - 02:49:38 CST)
  • Ashar Malik (Tue Jan 16 2018 - 01:52:23 CST)
  • Roshan Shrestha (Mon Jan 15 2018 - 22:51:22 CST)
• view temperature, forces and velocities
  • Axel Kohlmeyer (Sat Mar 05 2011 - 12:27:23 CST)
  • alberto baldelli (Fri Mar 04 2011 - 09:35:18 CST)
• ViewChangerRender (VCR) plug-in
  • Nuno Sousa Cerqueira (Thu Jul 21 2011 - 11:53:32 CDT)
• Viewing "other" data as a trajectory plays
  • J. Nathan Scott (Thu Jan 26 2012 - 13:07:28 CST)
  • John Stone (Thu Jan 26 2012 - 12:19:32 CST)
  • J. Nathan Scott (Thu Jan 26 2012 - 11:40:08 CST)
• viewing .brix maps
  • John Stone (Mon Mar 14 2005 - 13:08:22 CST)
  • Assa Sittner (Sun Mar 13 2005 - 04:58:03 CST)
• Viewing Amber6 trajectory with VMD 1.8.1
  • John Stone (Fri Oct 24 2003 - 19:05:32 CDT)
  • Amrit Kalra (Mon Oct 20 2003 - 01:21:03 CDT)
• viewing an embryo
  • Anton Arkhipov (Tue Sep 23 2008 - 15:03:01 CDT)
  • Axel Kohlmeyer (Tue Sep 23 2008 - 15:10:02 CDT)
  • markt_at_mskcc.org (Tue Sep 23 2008 - 14:54:19 CDT)
  • Leandro Martínez (Tue Sep 23 2008 - 14:48:30 CDT)
  • Anton Arkhipov (Tue Sep 23 2008 - 14:37:15 CDT)
  • markt_at_mskcc.org (Tue Sep 23 2008 - 14:04:41 CDT)
• Viewing an SDF file in VMD
  • John Stone (Thu Jun 30 2005 - 13:38:44 CDT)
  • Brian Dotson (Thu Jun 30 2005 - 07:54:31 CDT)
• viewing bond between two hydrogens on a water molecule
  • Axel Kohlmeyer (Mon Oct 07 2013 - 10:25:03 CDT)
  • John Stone (Mon Oct 07 2013 - 09:37:35 CDT)
  • Ramin Ekhteiari (Mon Oct 07 2013 - 06:23:19 CDT)
• Viewing changing beta along a trajectory
  • John Stone (Tue Mar 09 2010 - 10:54:06 CST)
  • Thomas Steinbrecher (Tue Mar 09 2010 - 10:26:16 CST)
  • John Stone (Tue Mar 09 2010 - 10:39:57 CST)
• viewing CHARMM trajectory
  • John Stone (Wed Sep 13 2000 - 22:33:09 CDT)
  • John Stone (Wed Sep 13 2000 - 22:30:44 CDT)
  • Ernesto Moreno (Tue Sep 12 2000 - 09:37:47 CDT)
  • Surjit Dixit (Mon Sep 11 2000 - 13:54:16 CDT)
• viewing dcd files
  • Axel Kohlmeyer (Thu Aug 04 2011 - 13:44:33 CDT)
  • Ismail, Mohd F. (Tue Aug 02 2011 - 23:49:04 CDT)
  • Vivek Ranjan (Tue Aug 02 2011 - 19:51:37 CDT)
• Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format'
  • Vidyalakshmi CM (Thu Jun 25 2015 - 10:39:21 CDT)
  • Axel Kohlmeyer (Thu Jun 25 2015 - 10:45:51 CDT)
  • Axel Kohlmeyer (Thu Jun 25 2015 - 10:29:11 CDT)
  • Vidyalakshmi CM (Thu Jun 25 2015 - 09:37:36 CDT)
  • Axel Kohlmeyer (Thu Jun 25 2015 - 08:56:29 CDT)
  • Vidyalakshmi CM (Thu Jun 25 2015 - 08:29:13 CDT)
• viewing heteroatoms?
  • John Stone (Thu May 04 2006 - 20:15:36 CDT)
  • Samuel Flores (Thu May 04 2006 - 20:05:26 CDT)
• viewing insight trajectories with vmd
  • John Stone (Tue Jun 25 2002 - 15:15:22 CDT)
  • Bjoern Windshuegel (Tue Jun 25 2002 - 01:29:15 CDT)
• Viewing Isosurface from g_spatial on VMD
  • Badmos, Sakiru (Mon Jan 23 2017 - 13:04:44 CST)
• Viewing MD trajectories
  • Jayendra Balasubramanian (Tue Apr 13 2004 - 16:21:16 CDT)
  • John Stone (Tue Apr 13 2004 - 16:44:44 CDT)
  • John Stone (Tue Apr 13 2004 - 15:59:32 CDT)
  • Kooser, Ara S (Tue Apr 13 2004 - 15:46:35 CDT)
  • John Stone (Tue Apr 13 2004 - 15:12:08 CDT)
  • Jayendra Balasubramanian (Tue Apr 13 2004 - 15:02:27 CDT)
  • John Stone (Fri Apr 09 2004 - 20:12:46 CDT)
  • Jayendra Balasubramanian (Fri Apr 09 2004 - 16:46:48 CDT)
• Viewing molden grid files
  • John Stone (Fri Jan 04 2008 - 13:06:22 CST)
  • Ignacio Fernández Galván (Fri Dec 21 2007 - 03:14:46 CST)
• viewing MOs
  • saam (Fri Aug 28 2009 - 15:37:59 CDT)
  • Axel Kohlmeyer (Fri Aug 28 2009 - 10:29:57 CDT)
  • John Stone (Fri Aug 28 2009 - 09:55:37 CDT)
  • Dan thomas Major (Fri Aug 28 2009 - 09:47:34 CDT)
• viewing pca output
  • John Stone (Fri May 02 2008 - 16:36:51 CDT)
  • Bala subramanian (Fri May 02 2008 - 06:16:00 CDT)
  • John Stone (Thu May 01 2008 - 22:38:31 CDT)
  • Bala subramanian (Thu Apr 24 2008 - 08:09:43 CDT)
• Viewing post script images
  • John Stone (Mon Feb 13 2023 - 09:15:20 CST)
  • GAGANJYOT KAUR BAKSHI (Mon Feb 13 2023 - 05:43:29 CST)
• Viewing SASA points through draw command-problem
  • Vasumathi Velachi (Fri Jun 13 2014 - 04:28:16 CDT)
  • Joaquim Rui de Castro Rodrigues (Thu Jun 12 2014 - 12:36:46 CDT)
  • Axel Kohlmeyer (Thu Jun 12 2014 - 12:16:20 CDT)
  • Vasumathi Velachi (Thu Jun 12 2014 - 11:33:04 CDT)
• Viewing single lipid layer in vmd
  • Roshan Shrestha (Mon Jul 31 2017 - 03:42:05 CDT)
• Viewing System of Molecules where coordinates are in text file.
  • Axel Kohlmeyer (Thu Dec 01 2011 - 22:28:12 CST)
  • Joey Vella (Thu Dec 01 2011 - 20:43:45 CST)
• viewing trajectory
  • Axel Kohlmeyer (Tue Mar 29 2011 - 19:32:41 CDT)
  • Moeed (Tue Mar 29 2011 - 18:44:43 CDT)
• Viewing Van der Waals bonds of a protein ligand in complex inquiry
  • Joel Subach (Mon Sep 11 2023 - 10:06:31 CDT)
  • Vermaas, Josh (Mon Sep 11 2023 - 09:00:34 CDT)
  • Joel Subach (Sun Sep 10 2023 - 07:38:30 CDT)
• Viewing with VMD bonds set by the "bond" command
  • FyD (Fri Mar 09 2012 - 12:10:27 CST)
• ViewMaster and rendering
  • Justin Gullingsrud (Thu Aug 02 2007 - 19:13:55 CDT)
  • Paula Marcela Petrone (Wed Aug 01 2007 - 10:00:34 CDT)
• viewMaster plugin
  • Nuno Sousa Cerqueira (Sun Oct 18 2015 - 12:11:41 CDT)
• viewpoint
  • John Stone (Thu Feb 08 2007 - 12:54:27 CST)
  • Levin, Andrew Michael (Thu Feb 08 2007 - 09:17:48 CST)
  • Levin, Andrew Michael (Thu Feb 08 2007 - 09:19:16 CST)
  • Levin, Andrew Michael (Thu Feb 08 2007 - 09:18:01 CST)
• Virtual Reality and VMD
  • John Stone (Tue Dec 14 2004 - 10:45:45 CST)
  • Eugen Leitl (Tue Dec 14 2004 - 10:41:33 CST)
  • Enrico Santori (Tue Dec 14 2004 - 09:32:30 CST)
  • John Stone (Tue Dec 14 2004 - 09:10:30 CST)
  • Enrico Santori (Tue Dec 14 2004 - 02:31:00 CST)
• Viscosity calculation
  • Yan Shen (Thu Jan 09 2014 - 13:19:25 CST)
• Visual Help
  • Jason Smith (Mon Apr 12 2021 - 00:47:52 CDT)
  • Robin Betz (Sun Apr 11 2021 - 23:18:38 CDT)
  • Mcguire, Kelly (Sun Apr 11 2021 - 20:38:48 CDT)
• Visual of a box and/or scale of distance in VMD graphics
  • Fernando Vallejos-Burgos (Fri Oct 07 2016 - 06:03:34 CDT)
  • Harish Srinivasan (Fri Oct 07 2016 - 01:03:17 CDT)
• Visualisation of CG bonds
  • Peter Freddolino (Mon Jun 27 2022 - 09:41:15 CDT)
  • Diego Gomes (Mon Jun 27 2022 - 11:21:34 CDT)
  • Roshan Shrestha (Mon Jun 27 2022 - 08:47:31 CDT)
  • Vermaas, Josh (Mon Jun 27 2022 - 07:52:11 CDT)
  • Smith, Harper E. (Sun Jun 26 2022 - 17:49:38 CDT)
  • Raman Preet Singh (Sun Jun 26 2022 - 13:07:45 CDT)
• visualisation of molecular orbitals in VMD
  • Marcelo C. R. Melo (Fri Nov 04 2022 - 10:28:52 CDT)
  • jing liang (Fri Nov 04 2022 - 06:37:41 CDT)
• Visualisation of VTF trajectories using VMD under Windows ?
  • Ajasja Ljubetiè (Mon Mar 29 2010 - 08:09:36 CDT)
  • Marek Maly (Wed Mar 24 2010 - 19:35:39 CDT)
  • Marek Maly (Wed Mar 24 2010 - 17:24:56 CDT)
  • Axel Kohlmeyer (Wed Mar 24 2010 - 12:04:45 CDT)
  • Ajasja LjubetiÄ� (Wed Mar 24 2010 - 11:29:10 CDT)
  • John Stone (Wed Mar 24 2010 - 11:01:16 CDT)
  • Olaf Lenz (Wed Mar 24 2010 - 10:19:33 CDT)
  • Marek Maly (Wed Mar 24 2010 - 05:31:36 CDT)
• visualisation problem with bonds and PBC
  • Axel Kohlmeyer (Fri Sep 26 2008 - 11:46:39 CDT)
  • Jennifer Williams (Fri Sep 26 2008 - 09:32:42 CDT)
• Visualise variable atoms
  • Axel Kohlmeyer (Thu Jun 27 2013 - 02:52:57 CDT)
  • amit kunte (Thu Jun 27 2013 - 01:34:09 CDT)
• visualising bonds in vmd
  • John Stone (Wed Sep 07 2005 - 16:11:13 CDT)
  • Claire Zerafa (Wed Sep 07 2005 - 16:02:25 CDT)
  • Claire Zerafa (Wed Sep 07 2005 - 08:00:31 CDT)
• Visualising Helix Dipole Moment
  • Anthony Ivetac (Mon Jul 19 2004 - 05:25:54 CDT)
• Visualising Molecular Vibrations
  • Giacomo Fiorin (Tue Oct 03 2017 - 15:18:34 CDT)
  • Mo Rahman (Tue Oct 03 2017 - 08:29:13 CDT)
• visualising protein dynamics
  • Adrian Roitberg (Wed Jun 22 2005 - 16:57:47 CDT)
  • John Stone (Wed Jun 22 2005 - 14:03:03 CDT)
  • Claire Zerafa (Wed Jun 22 2005 - 12:39:55 CDT)
• visualising the bonds which indicated by "connect" order in pdb files
  • John Stone (Wed Nov 13 2019 - 00:38:47 CST)
  • Hoda Shirzad (Sat Nov 02 2019 - 00:43:18 CDT)
• visualising unit cell "plus a little more"
  • Norman Geist (Thu Sep 24 2015 - 02:31:36 CDT)
  • Francesca Lønstad Bleken (Thu Sep 24 2015 - 01:37:00 CDT)
  • Morgan, Brittany (Wed Sep 23 2015 - 08:36:21 CDT)
  • Francesca Lønstad Bleken (Wed Sep 23 2015 - 04:34:52 CDT)
• Visualization and reading problems
  • Axel Kohlmeyer (Sun Apr 29 2007 - 13:41:54 CDT)
  • Marcelo Puiatti (Fri Apr 27 2007 - 18:12:44 CDT)
• visualization code
  • Axel Kohlmeyer (Thu Aug 10 2006 - 00:00:11 CDT)
  • John Stone (Wed Aug 09 2006 - 22:45:06 CDT)
  • Hai-Jun Su (Wed Aug 09 2006 - 22:31:00 CDT)
• Visualization in 3-D using NVIDIA quaddro
  • John Stone (Wed Apr 09 2008 - 10:28:10 CDT)
  • Himanshu Khandelia (Wed Apr 09 2008 - 05:27:18 CDT)
• visualization of a normal mode analysis
  • Albert (Wed Feb 28 2018 - 14:44:25 CST)
• Visualization of coarse grained molecule with coarse_grain.tcl
  • Paolo Conflitti (Tue May 03 2011 - 10:10:41 CDT)
• visualization of DX map
  • John Stone (Thu Oct 27 2005 - 11:27:13 CDT)
  • l.spitzer_at_fr.fournierpharma.com (Thu Oct 27 2005 - 03:22:04 CDT)
  • John Stone (Wed Oct 26 2005 - 17:37:51 CDT)
  • l.spitzer_at_fr.fournierpharma.com (Tue Oct 25 2005 - 02:28:43 CDT)
  • John Stone (Mon Oct 24 2005 - 13:15:07 CDT)
  • l.spitzer_at_fr.fournierpharma.com (Mon Oct 24 2005 - 10:38:40 CDT)
• visualization of el. potential
  • Petr Jerabek (Mon Oct 14 2013 - 14:06:22 CDT)
  • John Stone (Mon Oct 14 2013 - 10:13:28 CDT)
  • Petr Jerabek (Mon Oct 14 2013 - 07:44:32 CDT)
• visualization of electroly solvation shells
  • Axel Kohlmeyer (Mon Jul 19 2004 - 04:09:34 CDT)
• Visualization of FEP simulation
  • Bruno Luís Pinto de Oliveira (Fri Oct 21 2011 - 12:37:34 CDT)
  • Pawel Kedzierski (Fri Oct 21 2011 - 04:26:51 CDT)
  • Bruno Luís Pinto de Oliveira (Thu Oct 20 2011 - 06:15:37 CDT)
  • PaweÅ‚ KÄ™dzierski (Thu Oct 20 2011 - 03:06:30 CDT)
  • Bruno Luís Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
  • Bruno Luís Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
  • Bruno Luís Pinto de Oliveira (Thu Sep 08 2011 - 12:38:41 CDT)
• visualization of ghemical figure
  • John Stone (Fri Sep 16 2005 - 10:30:01 CDT)
  • haider abbas (Fri Sep 16 2005 - 04:29:37 CDT)
• visualization of HOMO&LUMO in vmd
  • Axel Kohlmeyer (Tue May 01 2012 - 07:31:29 CDT)
  • leila karami (Tue May 01 2012 - 04:26:06 CDT)
• Visualization of new bonds created in LAMMPS simulation
  • Axel Kohlmeyer (Wed Jan 03 2024 - 13:04:34 CST)
  • Roni Saiba (Thu Dec 21 2023 - 01:05:23 CST)
• visualization problem
  • John Stone (Fri Jul 31 2009 - 10:41:30 CDT)
  • Axel Kohlmeyer (Fri Jul 31 2009 - 07:44:29 CDT)
  • Srikanth Dhondi (Thu Jul 30 2009 - 21:58:27 CDT)
• Visualization problem of random Polyethylene chains in VMD.
  • ABHISHEK GUPTA (Tue Mar 15 2016 - 01:17:07 CDT)
• Visualization problem with aromatic bromo atom?
  • Axel Kohlmeyer (Sun Sep 12 2010 - 14:59:54 CDT)
  • Meyer-Almes, Franz-Josef, Prof. Dr. (Sun Sep 12 2010 - 13:18:46 CDT)
• Visualization Question
  • John Stone (Thu Mar 28 2019 - 22:44:13 CDT)
  • McGuire, Kelly (Tue Mar 26 2019 - 10:15:25 CDT)
  • Joao Ribeiro (Tue Mar 26 2019 - 08:16:02 CDT)
  • McGuire, Kelly (Mon Mar 25 2019 - 19:05:45 CDT)
• Visualization State Issue With Secondary Structure
  • Elizabeth Wait (Tue Jun 11 2019 - 11:16:04 CDT)
  • John Stone (Thu Jun 06 2019 - 22:45:26 CDT)
  • Vermaas, Joshua (Thu Jun 06 2019 - 17:33:14 CDT)
  • Elizabeth Wait (Thu Jun 06 2019 - 15:46:40 CDT)
• Visualize a lammpstrij file
  • Axel Kohlmeyer (Thu Jan 20 2022 - 06:45:18 CST)
  • Otakandza Glenn (Thu Jan 20 2022 - 05:52:50 CST)
• Visualize a SMILES string
  • Mayne, Christopher G (Wed Apr 30 2014 - 13:32:39 CDT)
  • Jean-Patrick Francoia (Wed Apr 30 2014 - 13:18:42 CDT)
  • Mayne, Christopher G (Wed Apr 30 2014 - 08:05:19 CDT)
  • Jean-Patrick Francoia (Wed Apr 30 2014 - 01:37:00 CDT)
  • Jean-Patrick Francoia (Tue Apr 29 2014 - 15:51:45 CDT)
  • Jean-Patrick Francoia (Tue Apr 29 2014 - 15:47:08 CDT)
  • Davide Provasi (Tue Apr 29 2014 - 11:56:16 CDT)
  • Lorenzo Gontrani (Tue Apr 29 2014 - 11:15:35 CDT)
  • Axel Kohlmeyer (Tue Apr 29 2014 - 10:50:28 CDT)
  • Mayne, Christopher G (Tue Apr 29 2014 - 09:57:05 CDT)
  • Axel Kohlmeyer (Tue Apr 29 2014 - 09:32:36 CDT)
  • Jean-Patrick Francoia (Tue Apr 29 2014 - 09:01:39 CDT)
  • Axel Kohlmeyer (Tue Apr 29 2014 - 09:16:43 CDT)
  • Axel Kohlmeyer (Tue Apr 29 2014 - 08:54:50 CDT)
  • Jean-Patrick Francoia (Tue Apr 29 2014 - 07:49:11 CDT)
• visualize gromacs trajectory in vmd
  • sunyeping (Tue Apr 01 2014 - 10:43:41 CDT)
• VISUALIZE HYDROGEN BOND BETWEEN PROTEIN AND LIGAND
  • Neha Gupta (Wed Feb 21 2018 - 05:08:07 CST)
• Visualize intersection of overlapping spheres?
  • Bjoern Olausson (Thu Jun 03 2010 - 02:24:02 CDT)
  • Axel Kohlmeyer (Wed Jun 02 2010 - 13:46:02 CDT)
  • John Stone (Wed Jun 02 2010 - 13:48:36 CDT)
  • John Stone (Wed Jun 02 2010 - 12:57:04 CDT)
  • Bjoern Olausson (Wed Jun 02 2010 - 06:51:56 CDT)
• Visualize temperature
  • Vermaas, Joshua (Fri Aug 18 2017 - 14:35:14 CDT)
  • Chris Neale (Fri Aug 18 2017 - 14:53:11 CDT)
  • Manish Gupta (Fri Aug 18 2017 - 15:02:36 CDT)
  • Manish Gupta (Fri Aug 18 2017 - 14:57:29 CDT)
  • Manish Gupta (Fri Aug 18 2017 - 12:04:54 CDT)
• visualize trajectories from lammps parallel results
  • shiziyuan (Thu Jun 17 2010 - 15:44:41 CDT)
  • Axel Kohlmeyer (Thu Jun 17 2010 - 15:34:31 CDT)
  • John Stone (Thu Jun 17 2010 - 14:41:03 CDT)
  • shiziyuan (Tue Jun 15 2010 - 15:44:58 CDT)
• visualizing a simple polymer chain via VMD
  • Sergey Mkrtchyan (Thu Jan 17 2008 - 16:31:07 CST)
  • Sergey Mkrtchyan (Thu Jan 17 2008 - 13:25:29 CST)
  • Olaf Lenz (Thu Jan 17 2008 - 01:24:34 CST)
  • Sergey Mkrtchyan (Wed Jan 16 2008 - 13:53:09 CST)
  • Axel Kohlmeyer (Wed Jan 16 2008 - 12:58:17 CST)
  • Sergey Mkrtchyan (Wed Jan 16 2008 - 12:39:31 CST)
  • Axel Kohlmeyer (Wed Jan 16 2008 - 12:26:08 CST)
  • Sergey Mkrtchyan (Wed Jan 16 2008 - 11:48:16 CST)
• visualizing an atomselect
  • Sergio Anis (Wed Sep 28 2005 - 20:54:35 CDT)
  • Chang, Christopher (Wed Sep 28 2005 - 18:38:29 CDT)
  • Turman, Cheri M (Wed Sep 28 2005 - 17:25:32 CDT)
• Visualizing an infinite carbon nanotube
  • John Stone (Mon Aug 15 2005 - 14:07:42 CDT)
  • Bob Johnson (Mon Aug 15 2005 - 13:23:44 CDT)
• Visualizing and counting broken bonds in VMD
  • Mercer, Brian S. (Mon Jun 22 2015 - 10:14:28 CDT)
  • Axel Kohlmeyer (Fri Jun 19 2015 - 16:11:54 CDT)
  • Mercer, Brian S. (Fri Jun 19 2015 - 15:53:28 CDT)
  • Axel Kohlmeyer (Fri Jun 19 2015 - 16:03:03 CDT)
  • Josh Vermaas (Fri Jun 19 2015 - 14:55:13 CDT)
  • Mercer, Brian S. (Fri Jun 19 2015 - 13:43:41 CDT)
• visualizing APBS output
  • Irene Newhouse (Wed Jan 20 2010 - 12:26:48 CST)
  • John Stone (Tue Jan 19 2010 - 22:07:43 CST)
  • Irene Newhouse (Tue Jan 19 2010 - 14:21:33 CST)
  • John Stone (Tue Jan 19 2010 - 13:50:55 CST)
  • Irene Newhouse (Tue Jan 19 2010 - 13:31:08 CST)
• visualizing biological molecule?
  • Samuel Flores (Thu May 04 2006 - 20:00:28 CDT)
  • John Stone (Thu May 04 2006 - 19:56:50 CDT)
  • Samuel Flores (Thu May 04 2006 - 19:47:43 CDT)
  • John Stone (Thu May 04 2006 - 10:57:22 CDT)
  • Samuel Flores (Wed May 03 2006 - 21:54:45 CDT)
• visualizing bonds in lammps output reaxff
  • Udeshini Manatunga (Fri May 08 2020 - 21:09:01 CDT)
  • Giacomo Fiorin (Fri May 08 2020 - 09:42:56 CDT)
  • Udeshini Manatunga (Fri May 08 2020 - 03:46:25 CDT)
• visualizing CCP4 maps in VMD
  • John Stone (Mon Nov 07 2005 - 15:22:40 CST)
  • Eric Johnson (Mon Nov 07 2005 - 14:51:57 CST)
  • Vlad Cojocaru (Mon Nov 07 2005 - 11:44:00 CST)
• visualizing certain sanpshots on top of each other
  • Suresh (Mon Dec 10 2012 - 22:27:04 CST)
  • Fatemesadat Emami (Mon Dec 10 2012 - 13:23:23 CST)
• visualizing charge density in vmd
  • John Stone (Thu Nov 17 2005 - 15:06:18 CST)
  • Michel Espinoza-Fonseca (Thu Nov 17 2005 - 09:48:14 CST)
• visualizing charges
  • Axel Kohlmeyer (Mon Sep 25 2006 - 10:01:46 CDT)
  • FyD (Mon Sep 25 2006 - 04:47:27 CDT)
  • John Stone (Sat Sep 23 2006 - 03:00:55 CDT)
  • FyD (Sat Sep 23 2006 - 01:37:06 CDT)
  • Axel Kohlmeyer (Fri Sep 22 2006 - 14:18:16 CDT)
  • Gustavo Seabra (Fri Sep 22 2006 - 13:37:34 CDT)
• visualizing charmm trajectories?
  • John Stone (Wed Nov 30 2005 - 17:44:05 CST)
  • Samuel Flores (Wed Nov 30 2005 - 17:37:16 CST)
• Visualizing coarse grained particles in VMD
  • John Stone (Fri Mar 27 2020 - 00:16:37 CDT)
  • Josh Vermaas (Thu Mar 26 2020 - 19:00:48 CDT)
  • Borne, Vincent (Thu Mar 26 2020 - 12:07:21 CDT)
• Visualizing CURVES output
  • John Stone (Fri Jun 20 2003 - 15:11:25 CDT)
  • Teletchéa Stéphane (Fri Jun 20 2003 - 06:36:12 CDT)
  • Vlad Cojocaru (Fri Jun 20 2003 - 05:08:12 CDT)
• Visualizing Delphi output
  • John Stone (Tue Jul 26 2005 - 10:11:45 CDT)
  • Vani Krishna (Tue Jul 26 2005 - 09:50:41 CDT)
• visualizing Delphi output (electrostatic potential)
  • John Stone (Thu Jan 23 2003 - 10:23:09 CST)
  • Vlad Cojocaru (Thu Jan 23 2003 - 10:08:51 CST)
• visualizing Delphi output (electrostatic potential)]
  • John Stone (Thu Jan 23 2003 - 14:37:36 CST)
• visualizing disulphide bonds
  • Axel Kohlmeyer (Sun Feb 24 2008 - 06:21:41 CST)
  • OZGE ENGIN (Sun Feb 24 2008 - 04:31:18 CST)
• Visualizing DNA Damage
  • satya kumar (Fri Oct 05 2012 - 14:40:05 CDT)
• visualizing dynamic charge
  • John Stone (Tue May 14 2013 - 13:11:16 CDT)
  • Axel Kohlmeyer (Tue May 14 2013 - 11:59:37 CDT)
  • Dave Schall (Tue May 14 2013 - 11:47:07 CDT)
  • Axel Kohlmeyer (Tue May 14 2013 - 02:38:00 CDT)
  • Dave Schall (Mon May 13 2013 - 15:20:24 CDT)
• Visualizing forces from .forcedcd files?
  • Smith, Harper E. (Wed Nov 04 2020 - 12:52:17 CST)
• Visualizing H-bonds between two segnames or chains
  • Axel Kohlmeyer (Wed Mar 25 2015 - 12:43:28 CDT)
  • Josh Vermaas (Wed Mar 25 2015 - 11:22:30 CDT)
  • Stefan Doerr (Wed Mar 25 2015 - 10:57:36 CDT)
  • Dolan, Michael A. (NIH/NIAID) [C] (Wed Mar 25 2015 - 10:30:07 CDT)
• Visualizing History file from DL_POLY
  • John Stone (Tue Jul 15 2008 - 10:39:33 CDT)
  • mahesh naalla (Mon Jul 14 2008 - 11:43:43 CDT)
• visualizing janus particles in VMD
  • Axel Kohlmeyer (Mon Aug 11 2014 - 07:04:31 CDT)
  • Gamot, Ritchie (Mon Aug 11 2014 - 04:54:30 CDT)
  • Axel Kohlmeyer (Sat Aug 09 2014 - 19:05:25 CDT)
  • Gamot, Ritchie (Sat Aug 09 2014 - 13:24:42 CDT)
• visualizing MDFF results with explicit solvent
  • Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 10:32:54 CST)
  • Josh Vermaas (Tue Mar 01 2016 - 10:14:21 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 10:03:44 CST)
  • John Stone (Tue Mar 01 2016 - 09:50:56 CST)
  • Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 09:34:34 CST)
• Visualizing Molecule-Molecule RDFs instead of atom-atom
  • Axel Kohlmeyer (Tue Jun 16 2020 - 16:58:45 CDT)
  • Rameswar Bhattacharjee (Tue Jun 16 2020 - 16:15:39 CDT)
  • Axel Kohlmeyer (Tue Jun 16 2020 - 16:01:39 CDT)
  • Rameswar Bhattacharjee (Tue Jun 16 2020 - 15:31:58 CDT)
• visualizing multiframe trajectory simultaneously with multimolecule
  • Axel Kohlmeyer (Mon Dec 17 2012 - 10:37:43 CST)
  • Bennion, Brian (Mon Dec 17 2012 - 10:19:02 CST)
  • Axel Kohlmeyer (Sat Dec 15 2012 - 01:07:21 CST)
  • Bennion, Brian (Fri Dec 14 2012 - 17:06:03 CST)
  • Axel Kohlmeyer (Thu Dec 13 2012 - 12:53:11 CST)
  • Bennion, Brian (Thu Dec 13 2012 - 11:46:18 CST)
• Visualizing multiple molecules
  • max_at_liaad.up.pt (Fri Oct 31 2008 - 07:26:00 CDT)
• visualizing NMR constrains
  • Nuno Loureiro Ferreira (Fri Mar 23 2007 - 09:29:41 CDT)
  • John Stone (Thu Mar 22 2007 - 21:06:20 CDT)
  • Marcela Madrid (Thu Mar 22 2007 - 17:14:37 CDT)
• Visualizing phonon displacement patterns from axsf format forces?
  • Axel Kohlmeyer (Sun Oct 21 2012 - 02:49:55 CDT)
  • Ijäs Mari (Sun Oct 21 2012 - 01:46:49 CDT)
• Visualizing Salt Bridges
  • John Stone (Mon Jun 30 2014 - 22:42:45 CDT)
  • Mitul Saha (Sat Jun 14 2014 - 19:33:44 CDT)
• Visualizing segmentation/labeling without python dependency
  • John Stone (Thu Sep 02 2021 - 09:27:42 CDT)
  • Josh Vermaas (Thu Sep 02 2021 - 09:12:24 CDT)
  • Bruininks, B.M.H. (Thu Sep 02 2021 - 08:06:55 CDT)
  • Vermaas, Josh (Thu Sep 02 2021 - 07:46:55 CDT)
  • Bruininks, B.M.H. (Thu Sep 02 2021 - 04:15:40 CDT)
  • Vermaas, Josh (Wed Sep 01 2021 - 10:51:53 CDT)
  • Bruininks, B.M.H. (Wed Sep 01 2021 - 08:35:14 CDT)
• visualizing small molecule in a trajectory file .trr and .gro using VMD
  • Joshua Adelman (Sat Jun 05 2010 - 08:16:16 CDT)
  • Hassan Shallal (Fri Jun 04 2010 - 22:49:33 CDT)
• Visualizing Timeline (tml) data w/o having to load trajectories
  • Barry Isralewitz (Thu Oct 27 2011 - 13:25:08 CDT)
  • Bryan Roessler (Thu Oct 27 2011 - 11:34:40 CDT)
• Visualizing Trajectory file: .pdb or .xyz
  • winardi, erik (Wed Sep 07 2011 - 18:02:19 CDT)
  • Axel Kohlmeyer (Wed Sep 07 2011 - 18:11:44 CDT)
  • Axel Kohlmeyer (Wed Sep 07 2011 - 14:55:10 CDT)
  • winardi, erik (Wed Sep 07 2011 - 13:49:06 CDT)
• Visualizing trajectory with changing atoms
  • John Stone (Tue Mar 04 2008 - 15:26:04 CST)
  • Suman Chakrabarty (Tue Mar 04 2008 - 15:19:58 CST)
• visualizing trr file
  • Esteban Gabriel Vega Hissi (Fri Mar 26 2010 - 16:28:57 CDT)
  • gurvisha sandhu (Thu Mar 25 2010 - 03:27:23 CDT)
• visualizing trr files
  • Axel Kohlmeyer (Fri Jun 18 2004 - 13:46:13 CDT)
  • John Stone (Fri Jun 18 2004 - 10:24:54 CDT)
  • Nitin Rathore (Fri Jun 18 2004 - 10:03:37 CDT)
• Visualizing two different data sets in the isosurface mode
  • DEBOSTUTI GHOSHDASTIDAR (Sat Oct 11 2014 - 00:31:44 CDT)
  • John Stone (Fri Oct 10 2014 - 10:07:02 CDT)
  • DEBOSTUTI GHOSHDASTIDAR (Thu Oct 09 2014 - 02:24:39 CDT)
• visualizing unrealistic bonds
  • Axel Kohlmeyer (Tue Aug 23 2011 - 10:18:00 CDT)
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:30:52 CDT)
  • John Stone (Tue Aug 23 2011 - 09:06:23 CDT)
  • Moeed (Tue Aug 23 2011 - 05:49:22 CDT)
  • Magnus Andersson (Mon Aug 15 2011 - 14:26:08 CDT)
  • Axel Kohlmeyer (Mon Aug 15 2011 - 12:07:13 CDT)
  • John Stone (Mon Aug 15 2011 - 11:21:02 CDT)
  • Moeed (Mon Aug 15 2011 - 11:09:51 CDT)
• Visualizing Vibrational Modes
  • Axel Kohlmeyer (Tue Jun 09 2020 - 18:08:29 CDT)
  • Axel Kohlmeyer (Tue Jun 09 2020 - 17:23:13 CDT)
  • MD Simulation (Tue Jun 09 2020 - 17:47:15 CDT)
  • MD Simulation (Tue Jun 09 2020 - 16:43:38 CDT)
• Visualizing volume slice from PME electrostatics
  • John Stone (Thu Apr 03 2014 - 10:51:58 CDT)
  • Riccardo Innocenti Malini (Thu Apr 03 2014 - 03:40:28 CDT)
• Visualizing volumetric data only for the small portion of a system
  • reza vatan (Sat Apr 22 2017 - 18:03:21 CDT)
• Visualizing volumetric data with Situs and VMD
  • Willy Wriggers (Mon Feb 01 1999 - 16:55:29 CST)
• Visulizing subunits
  • Francesco Pietra (Tue Feb 11 2020 - 09:11:47 CST)
• vizualization of modes
  • Nguyen Hoang Phuong (Tue Sep 30 2003 - 10:12:03 CDT)
  • John Stone (Tue Sep 30 2003 - 10:17:49 CDT)
  • $B:,>k(J $B6Q(J (Tue Sep 30 2003 - 03:31:55 CDT)
• Vizualization Problem while opening DX file
  • John Stone (Wed Jan 03 2007 - 10:03:25 CST)
• Vlad has Tagged you! :)
  • Vlad Cojocaru (Mon Apr 09 2007 - 05:06:39 CDT)
• vmd
  • sajad falsafi (Sat Aug 06 2011 - 05:55:14 CDT)
  • Shesh Nath (Sat Aug 06 2011 - 02:04:59 CDT)
  • Asfa Ali (Thu Feb 25 2010 - 13:18:21 CST)
  • John Stone (Sun Mar 11 2007 - 18:49:02 CDT)
  • Rex Palmer (Thu Mar 08 2007 - 05:29:14 CST)
  • John Stone (Tue Jul 08 2003 - 10:44:23 CDT)
  • Georgios Scheiner-Bobis (Tue Jul 08 2003 - 03:39:38 CDT)
• VMD & FC 4.0
  • B.D Allen (Wed Jul 13 2005 - 16:30:12 CDT)
  • FyD (Wed Jul 13 2005 - 15:56:59 CDT)
  • Jerry Ebalunode (Wed Jul 13 2005 - 15:02:05 CDT)
  • FyD (Wed Jul 13 2005 - 14:42:37 CDT)
• VMD & NAMD
  • John Stone (Wed Jun 18 2003 - 10:09:35 CDT)
• VMD & NAMD atoms naming convention?
  • Axel Kohlmeyer (Tue Jan 27 2009 - 08:35:34 CST)
  • Javier Goicochea (Tue Jan 27 2009 - 03:05:09 CST)
• VMD & OpenGL GLX Extension
  • John Stone (Wed Oct 24 2007 - 17:36:21 CDT)
  • Meij, Henk (Mon Oct 22 2007 - 14:55:42 CDT)
• VMD & PoV files
  • Andrew Dalke (Wed Oct 08 1997 - 12:12:54 CDT)
  • Mensur (Mon Oct 06 1997 - 19:34:47 CDT)
• vmd & python
  • John Stone (Fri Oct 14 2005 - 14:50:24 CDT)
  • Vlad Cojocaru (Fri Oct 14 2005 - 13:15:40 CDT)
• VMD 'guesses' no. of frames?
  • John Stone (Thu Nov 16 2006 - 22:00:44 CST)
  • Neelanjana Sengupta (Thu Nov 16 2006 - 21:55:01 CST)
  • John Stone (Thu Nov 16 2006 - 21:49:09 CST)
  • Neelanjana Sengupta (Thu Nov 16 2006 - 21:44:14 CST)
  • John Stone (Thu Nov 16 2006 - 21:27:53 CST)
  • Neelanjana Sengupta (Thu Nov 16 2006 - 21:15:38 CST)
• VMD (and NAMD) fail to read simple AMBER prmtop file (and it's not the SCEE and SCNB flags)
  • Thomas Evangelidis (Mon Oct 22 2012 - 06:15:49 CDT)
  • Jose Borreguero (Sat Oct 20 2012 - 15:57:16 CDT)
• VMD + linux (64) + Flock of Birds
  • John Stone (Mon Jul 25 2005 - 15:11:19 CDT)
  • John Stone (Tue Jul 19 2005 - 16:32:46 CDT)
  • Elena Slobounov (Fri Jul 15 2005 - 16:06:24 CDT)
• VMD + MSMS + WinNT
  • John Stone (Thu Nov 30 2000 - 21:20:53 CST)
  • ee_at_post.harvard.edu (Thu Nov 30 2000 - 15:27:31 CST)
• VMD - ATI video card
  • Axel Kohlmeyer (Tue Oct 31 2006 - 13:47:10 CST)
  • nunolf_at_ci.uc.pt (Tue Oct 31 2006 - 13:01:24 CST)
  • John Stone (Fri Oct 27 2006 - 12:44:14 CDT)
  • nunolf_at_ci.uc.pt (Fri Oct 27 2006 - 12:32:36 CDT)
• VMD - cannot download
  • James Kress (Sun Jul 26 2015 - 20:31:16 CDT)
  • James Kress (Sun Jul 26 2015 - 17:40:50 CDT)
• VMD - Measure water flow
  • The Cromicus Productions (Wed Nov 28 2018 - 11:41:40 CST)
• vmd - rendering
  • Ramasamy, Ellankavi (Wed Aug 25 2010 - 09:32:14 CDT)
  • John Stone (Wed Aug 25 2010 - 09:49:28 CDT)
• VMD - unable to create OpenGL
  • Axel Kohlmeyer (Tue Nov 07 2006 - 08:37:37 CST)
  • bertrand russell (Tue Nov 07 2006 - 03:31:29 CST)
• Vmd -dispdev text under OS X
  • John Stone (Mon Aug 04 2003 - 20:13:47 CDT)
  • Ken Sale (Mon Aug 04 2003 - 20:04:25 CDT)
• VMD / Eye3D stereo works on Mac G4...
  • John Stone (Fri Jul 12 2002 - 13:18:21 CDT)
• vmd / python / f10
  • John Stone (Sun May 17 2009 - 12:20:39 CDT)
  • Axel Kohlmeyer (Sun May 17 2009 - 08:37:47 CDT)
  • Cameron Mura (Sat May 16 2009 - 22:00:29 CDT)
  • Cameron Mura (Sat May 16 2009 - 18:43:18 CDT)
  • John Stone (Sat May 16 2009 - 18:57:24 CDT)
• vmd / python / f10]
  • Cameron Mura (Sun May 17 2009 - 19:07:47 CDT)
  • John Stone (Mon May 18 2009 - 00:15:06 CDT)
• VMD / Tachyon Questions
  • Andrew (Tue Jul 06 2010 - 17:05:13 CDT)
  • John Stone (Thu Jul 01 2010 - 10:58:26 CDT)
  • Andrew (Sun Jun 27 2010 - 19:27:21 CDT)
• VMD /w >2GB RAM on Windows XP, and Windows XP x64 64-bit version...
  • John Stone (Wed Feb 22 2006 - 10:51:19 CST)
• VMD 1.2 port to MkLinux/LinuxPPC
  • Tom Pollard (Mon Aug 10 1998 - 01:00:23 CDT)
• VMD 1.2b2 is now available!!!
  • Sergei Izrailev (Tue May 12 1998 - 18:29:10 CDT)
• VMD 1.2b2 Linux & MSMS ...
  • Ivo Hofacker (Wed May 20 1998 - 04:56:29 CDT)
  • . (Sun May 17 1998 - 08:55:16 CDT)
• VMD 1.2b3 is available!
  • John Stone (Fri Jun 26 1998 - 12:57:17 CDT)
• VMD 1.3 Alpha 2 release...
  • John Stone (Mon Jan 25 1999 - 20:57:45 CST)
• VMD 1.3 Beta 1 release ...
  • John Stone (Wed Feb 17 1999 - 02:08:02 CST)
• VMD 1.3 Beta 2 release ... ¶¬
  • John Stone (Wed Feb 24 1999 - 13:38:37 CST)
• VMD 1.3 Release
  • John Stone (Mon Apr 05 1999 - 16:46:35 CDT)
• VMD 1.4 Alpha 1 (Windows) is available.
  • John Stone (Wed May 19 1999 - 17:21:47 CDT)
• VMD 1.4 Alpha 2 (Windows) is available.
  • John Stone (Fri Jun 18 1999 - 16:24:12 CDT)
• VMD 1.4 Alpha 3 (Windows+Unix) is available.
  • John Stone (Tue Jul 27 1999 - 15:37:46 CDT)
• VMD 1.4 Alpha 4 (Windows) is available.
  • John Stone (Mon Aug 09 1999 - 17:00:50 CDT)
• VMD 1.4 Alpha 5 (Windows+Unix) is available.
  • John Stone (Tue Aug 17 1999 - 00:55:58 CDT)
• VMD 1.4 Released (long)
  • John Stone (Fri Jan 07 2000 - 17:59:02 CST)
• VMD 1.5 is available!
  • John Stone (Wed Jun 28 2000 - 15:46:17 CDT)
• VMD 1.5a1 is available...
  • John Stone (Fri Mar 17 2000 - 10:01:47 CST)
• VMD 1.5a2 is available...
  • John Stone (Thu Apr 06 2000 - 17:50:42 CDT)
• VMD 1.5b1 is available!
  • John Stone (Thu May 25 2000 - 14:18:24 CDT)
• VMD 1.6.1 IRIX6_64 startup script fix
  • John Stone (Thu May 03 2001 - 11:16:05 CDT)
• VMD 1.6a4 core dumps.
  • Kim Branson (Thu Nov 23 2000 - 21:45:20 CST)
  • John Stone (Thu Nov 23 2000 - 19:45:08 CST)
  • Kim Branson (Thu Nov 23 2000 - 19:35:00 CST)
• VMD 1.7 AIX and MacOS X distributions updated...
  • John Stone (Wed Aug 08 2001 - 00:57:16 CDT)
• VMD 1.7.1
  • John Stone (Thu May 09 2002 - 14:28:43 CDT)
  • Ross J. Toedte (Thu May 09 2002 - 13:57:02 CDT)
• VMD 1.7.1 in CAVE?
  • John Stone (Fri Apr 12 2002 - 09:28:46 CDT)
  • Todd J. Furlong (Fri Apr 12 2002 - 07:57:05 CDT)
• VMD 1.7.1 on HPUX
  • John Stone (Thu Sep 05 2002 - 14:02:38 CDT)
  • Tobias Mandrup Johansen (Thu Sep 05 2002 - 05:41:31 CDT)
• VMD 1.7.1 on HPUX in text mode
  • Tobias Mandrup Johansen (Wed Sep 18 2002 - 02:38:57 CDT)
  • John Stone (Tue Sep 17 2002 - 09:31:01 CDT)
  • Tobias Mandrup Johansen (Tue Sep 17 2002 - 08:57:27 CDT)
• VMD 1.7.1 pre-alpha, volume visualization, new stereo modes, etc.
  • John Stone (Thu Aug 30 2001 - 23:29:56 CDT)
• VMD 1.8 alpha 10, publically available for testing....
  • John Stone (Fri May 24 2002 - 16:20:54 CDT)
• VMD 1.8 alpha 16 MacOSX depends on xterm
  • John Stone (Mon Jul 01 2002 - 21:55:40 CDT)
  • John Stone (Mon Jul 01 2002 - 14:36:44 CDT)
  • MengJuei Hsieh (Mon Jul 01 2002 - 14:34:29 CDT)
• VMD 1.8 alpha 16, publically available ...
  • Christian Simon (Mon Jun 24 2002 - 13:43:23 CDT)
• VMD 1.8 alpha 16, publically available for testing....
  • John Stone (Fri Jun 21 2002 - 16:14:14 CDT)
• VMD 1.8 alpha 21 available for testing!
  • John Stone (Thu Jul 18 2002 - 19:49:09 CDT)
• VMD 1.8 alpha 29 available for testing!
  • John Stone (Wed Nov 06 2002 - 14:40:16 CST)
  • John Stone (Mon Nov 04 2002 - 10:51:34 CST)
  • Marc Baaden (Mon Nov 04 2002 - 10:41:30 CST)
  • John Stone (Sat Nov 02 2002 - 00:25:51 CST)
  • #WONG CHEE HOW# (Fri Nov 01 2002 - 22:48:10 CST)
  • #WONG CHEE HOW# (Fri Nov 01 2002 - 22:47:01 CST)
  • John Stone (Fri Nov 01 2002 - 17:52:09 CST)
• VMD 1.8 alpha 29 available for testing!]
  • John Stone (Thu Nov 07 2002 - 15:11:38 CST)
• VMD 1.8 beta 2 available for testing!
  • John Stone (Mon Nov 18 2002 - 17:01:35 CST)
• VMD 1.8 beta 6 Unix binaries available...
  • John Stone (Tue Nov 26 2002 - 16:16:16 CST)
• vmd 1.8 Linux mesa on RedHat
  • Miguel (Fri Oct 24 2003 - 16:41:36 CDT)
  • John Stone (Fri Oct 24 2003 - 16:46:04 CDT)
  • Miguel (Wed Oct 15 2003 - 13:10:08 CDT)
  • John Stone (Wed Oct 15 2003 - 10:25:47 CDT)
  • Oliver Beckstein (Tue Oct 14 2003 - 17:44:42 CDT)
  • Miguel (Tue Oct 14 2003 - 18:05:08 CDT)
  • John Stone (Tue Oct 14 2003 - 16:59:24 CDT)
  • Miguel (Tue Oct 14 2003 - 16:26:15 CDT)
  • John Stone (Tue Oct 14 2003 - 15:45:51 CDT)
  • Jérôme Hénin (Tue Oct 14 2003 - 17:23:03 CDT)
  • Miguel (Tue Oct 14 2003 - 15:12:42 CDT)
  • james tomomi macdonald (Tue Oct 14 2003 - 13:53:53 CDT)
  • Miguel (Tue Oct 14 2003 - 13:24:56 CDT)
• VMD 1.8 on Windows2000 to crash when executing simple scripts
  • John Stone (Thu May 15 2003 - 17:52:44 CDT)
  • Jos Aerts (Thu May 15 2003 - 07:10:50 CDT)
• VMD 1.8 problems with AMBER parm and crd file
  • Lubos Vrbka (Wed Feb 05 2003 - 09:19:41 CST)
  • John Stone (Wed Feb 05 2003 - 09:33:25 CST)
  • Vlad Cojocaru (Wed Feb 05 2003 - 04:32:32 CST)
  • Lubos Vrbka (Wed Feb 05 2003 - 02:21:25 CST)
  • John Stone (Tue Feb 04 2003 - 15:29:38 CST)
  • John Stone (Tue Feb 04 2003 - 15:00:55 CST)
  • Yongmei Wang (Tue Feb 04 2003 - 14:57:18 CST)
• vmd 1.8.1
  • John Stone (Tue Oct 21 2003 - 15:54:51 CDT)
  • Ioana Cozmuta (Wed Oct 15 2003 - 18:54:58 CDT)
• VMD 1.8.1 beta 2 available for testing....
  • John Stone (Tue Apr 22 2003 - 15:25:05 CDT)
• VMD 1.8.1 beta 4 posted...
  • John Stone (Mon May 12 2003 - 18:59:46 CDT)
  • John Stone (Mon May 12 2003 - 15:25:22 CDT)
• VMD 1.8.1 beta 5 posted for testing...
  • John Stone (Thu May 15 2003 - 17:35:00 CDT)
• VMD 1.8.1 beta 6 posted...
  • John Stone (Mon May 19 2003 - 18:15:09 CDT)
  • John Stone (Mon May 19 2003 - 18:13:55 CDT)
• VMD 1.8.1 beta 7 posted..
  • John Stone (Tue May 20 2003 - 18:21:42 CDT)
• VMD 1.8.1 beta 8 posted...
  • John Stone (Fri May 23 2003 - 00:28:04 CDT)
• VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook
  • John Stone (Mon Nov 10 2003 - 11:13:26 CST)
  • Benjamin Goldsteen (Sun Nov 09 2003 - 20:49:02 CST)
  • John Stone (Thu Oct 23 2003 - 16:14:49 CDT)
  • Charles McCallum (Thu Oct 23 2003 - 13:12:39 CDT)
  • John Stone (Thu Oct 23 2003 - 09:46:37 CDT)
  • Dafydd Jones (Thu Oct 23 2003 - 07:00:38 CDT)
• Vmd 1.8.1 or 1.8.2 on Linux not starting text interpreter
  • John Stone (Fri Jun 18 2004 - 11:23:11 CDT)
  • Romaric David (Fri Jun 18 2004 - 02:13:23 CDT)
  • John Stone (Thu Jun 17 2004 - 16:01:18 CDT)
  • Romaric David (Thu Jun 17 2004 - 11:17:43 CDT)
  • Romaric David (Wed Jun 16 2004 - 11:56:18 CDT)
  • John Stone (Wed Jun 16 2004 - 09:26:33 CDT)
  • Romaric David (Wed Jun 16 2004 - 05:02:23 CDT)
• vmd 1.8.2 - slow on linux
  • John Stone (Wed May 12 2004 - 14:13:31 CDT)
  • Bogdan Costescu (Wed May 12 2004 - 07:26:11 CDT)
  • Olya Kravchenko (Tue May 11 2004 - 16:44:27 CDT)
  • Olya Kravchenko (Tue May 11 2004 - 16:38:39 CDT)
  • Brian Bennion (Tue May 11 2004 - 15:25:45 CDT)
  • Olya Kravchenko (Tue May 11 2004 - 15:30:47 CDT)
  • John Stone (Tue May 11 2004 - 14:19:15 CDT)
  • Olya Kravchenko (Tue May 11 2004 - 13:21:22 CDT)
  • John Stone (Tue May 11 2004 - 09:01:06 CDT)
  • Olya Kravchenko (Mon May 10 2004 - 16:35:36 CDT)
• VMD 1.8.2 and 1.8.3 fail on MacOS X after upgrade to 10.3.8
  • Alexander Peyser (Wed Mar 02 2005 - 12:45:30 CST)
  • Robert Brunner (Wed Mar 02 2005 - 10:36:54 CST)
  • Michael Feig (Wed Mar 02 2005 - 09:12:52 CST)
• VMD 1.8.2 on MacOS 10.3
  • John Stone (Tue Jan 06 2004 - 01:30:26 CST)
  • Ghislain Deslongchamps (Mon Jan 05 2004 - 19:32:22 CST)
• vmd 1.8.2b3 (September 16, 2003) on freebsd
  • John Stone (Wed Sep 17 2003 - 00:16:02 CDT)
  • Brian Bennion (Tue Sep 16 2003 - 23:05:07 CDT)
  • Tsu-Fan Cheng (Tue Sep 16 2003 - 22:00:19 CDT)
• VMD 1.8.3 beta 1 available for testing/feedback
  • John Stone (Mon Dec 06 2004 - 12:42:59 CST)
  • Jerry Ebalunode (Mon Dec 06 2004 - 11:56:12 CST)
  • John Stone (Sun Dec 05 2004 - 22:44:56 CST)
• vmd 1.8.3 mac OS-X dlpoly history file
  • John Stone (Tue Mar 29 2005 - 12:55:06 CST)
  • nicholas blake (Tue Mar 29 2005 - 12:49:17 CST)
• vmd 1.8.3 on my mac
  • John Stone (Sun Feb 20 2005 - 22:37:43 CST)
  • Ebrahim Mayat (Sun Feb 20 2005 - 08:42:49 CST)
  • fabri (Sat Feb 19 2005 - 03:21:14 CST)
• vmd 1.8.3 on OS X 10.2.8 (Jaguar) libmx.A.dylib
  • John Stone (Tue Jun 21 2005 - 09:40:22 CDT)
  • ILJA Khavrutskii (Mon Jun 20 2005 - 18:26:50 CDT)
  • John Stone (Mon Jun 20 2005 - 18:06:21 CDT)
  • ILJA Khavrutskii (Mon Jun 20 2005 - 17:47:47 CDT)
• VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5
  • John Stone (Fri Nov 24 2006 - 00:56:36 CST)
  • Adrian Koh (Thu Nov 23 2006 - 23:31:49 CST)
  • Adrian Koh (Thu Nov 23 2006 - 22:07:27 CST)
• vmd 1.8.3a7 no longer works after installing NVIDIA dr iver x86_64 -1.0-6106
  • John Stone (Thu Jul 08 2004 - 17:21:15 CDT)
  • Zampighi, Lorenzo (Thu Jul 08 2004 - 17:10:24 CDT)
• vmd 1.8.3a7 no longer works after installing NVIDIA driver x86_64 -1.0-6106
  • John Stone (Thu Jul 08 2004 - 16:41:06 CDT)
  • Zampighi, Lorenzo (Thu Jul 08 2004 - 16:31:27 CDT)
• VMD 1.8.4 beta 11 test version available
  • John Stone (Fri Feb 10 2006 - 19:12:57 CST)
  • Warren DeLano (Fri Feb 10 2006 - 19:12:14 CST)
  • Jan Saam (Fri Feb 10 2006 - 18:29:34 CST)
  • John Stone (Fri Feb 10 2006 - 17:50:44 CST)
  • L. Michel Espinoza-Fonseca (Fri Feb 10 2006 - 17:43:07 CST)
  • John Stone (Fri Feb 10 2006 - 17:20:47 CST)
• VMD 1.8.4 beta 6 posted on the web...
  • John Stone (Mon Dec 26 2005 - 11:59:43 CST)
  • John Stone (Thu Dec 22 2005 - 16:46:43 CST)
• VMD 1.8.4 beta 7 posted for testers...
  • John Stone (Wed Jan 04 2006 - 19:19:35 CST)
• VMD 1.8.4 hangs on AMD64
  • Peter Carlsson (Tue Dec 13 2005 - 15:38:22 CST)
  • John Stone (Tue Dec 13 2005 - 13:28:18 CST)
  • Peter Carlsson (Tue Dec 13 2005 - 11:48:48 CST)
• vmd 1.8.4 on Fedora Core 5
  • Marc Petitmermet (Tue Apr 18 2006 - 11:21:39 CDT)
  • Marc Petitmermet (Tue Apr 18 2006 - 06:13:18 CDT)
• VMD 1.8.4 support for AMBER binary trajectory files
  • John Stone (Tue Oct 31 2006 - 19:52:15 CST)
  • Kenley Barrett (Tue Oct 31 2006 - 17:47:05 CST)
• VMD 1.8.4 test builds, 32-bit and 64-bit AIX5...
  • John Stone (Fri Jun 24 2005 - 18:24:55 CDT)
  • John Stone (Fri Jun 24 2005 - 11:18:50 CDT)
  • Ioana Cozmuta (Thu Jun 23 2005 - 17:12:47 CDT)
  • Axel Kohlmeyer (Thu Jun 23 2005 - 02:34:26 CDT)
  • John Stone (Wed Jun 22 2005 - 13:45:21 CDT)
  • Oliver Otto (Wed Jun 22 2005 - 12:25:54 CDT)
  • Oliver Otto (Wed Jun 22 2005 - 11:55:05 CDT)
  • John Stone (Wed Jun 22 2005 - 11:11:44 CDT)
  • Ioana Cozmuta (Tue Jun 21 2005 - 21:36:27 CDT)
  • John Stone (Tue Jun 21 2005 - 17:50:56 CDT)
  • Ioana Cozmuta (Tue Jun 21 2005 - 17:47:24 CDT)
  • John Stone (Tue Jun 21 2005 - 14:46:32 CDT)
• VMD 1.8.4b12 test version, Wiki / BioCoRE public area
  • John Stone (Thu Mar 16 2006 - 16:44:57 CST)
• vmd 1.8.5
  • John Stone (Fri Jun 02 2006 - 12:24:19 CDT)
  • L. Michel Espinoza-Fonseca (Fri Jun 02 2006 - 12:14:46 CDT)
• VMD 1.8.5 beta 7 test version posted
  • John Stone (Sun Aug 13 2006 - 17:49:32 CDT)
• VMD 1.8.5 installed. The graphics flashed and disappeared after installation.
  • Margaret S. Cheung (Sat Dec 23 2006 - 11:00:18 CST)
  • Margaret S. Cheung (Fri Dec 22 2006 - 12:15:25 CST)
  • Peter Freddolino (Wed Dec 20 2006 - 10:08:49 CST)
  • Margaret S. Cheung (Thu Dec 21 2006 - 08:04:38 CST)
  • Axel Kohlmeyer (Tue Dec 19 2006 - 14:15:00 CST)
  • Peter Freddolino (Tue Dec 19 2006 - 13:30:20 CST)
  • Margaret S. Cheung (Wed Dec 20 2006 - 12:00:11 CST)
• VMD 1.8.5 on Mac OSX Panther
  • Neelanjana Sengupta (Mon Oct 16 2006 - 08:32:06 CDT)
• VMD 1.8.5 plugin update 1 posted...
  • John Stone (Wed Nov 15 2006 - 17:12:58 CST)
• VMD 1.8.5 startup
  • Chang, Christopher (Thu Nov 09 2006 - 14:20:16 CST)
  • dan wright (Thu Nov 09 2006 - 07:47:03 CST)
  • Jacob Poehlsgaard (Thu Nov 09 2006 - 02:04:51 CST)
  • Chang, Christopher (Wed Nov 08 2006 - 14:56:37 CST)
• vmd 1.8.6 doesn't run on Fedora Core 7 EMT64
  • Axel Kohlmeyer (Fri Nov 16 2007 - 23:56:37 CST)
  • Pascale Geysermans (Fri Nov 16 2007 - 09:37:50 CST)
• VMD 1.8.6 for UBUNTU 8.04LTS
  • Mamta Mohan (Thu Oct 09 2008 - 10:55:29 CDT)
  • Alexander A. Vakhrushev (Wed Oct 08 2008 - 23:37:06 CDT)
  • Axel Kohlmeyer (Wed Oct 08 2008 - 20:57:54 CDT)
  • Mamta Mohan (Wed Oct 08 2008 - 20:21:11 CDT)
  • Mamta Mohan (Fri Oct 03 2008 - 14:03:28 CDT)
  • John Stone (Fri Oct 03 2008 - 14:15:18 CDT)
• VMD 1.8.6 GLSL problem
  • John Stone (Tue Apr 10 2007 - 10:22:57 CDT)
  • daniel aguayo (Tue Apr 10 2007 - 10:11:36 CDT)
  • John Stone (Tue Apr 10 2007 - 08:00:26 CDT)
  • daniel aguayo (Tue Apr 10 2007 - 01:21:34 CDT)
  • John Stone (Mon Apr 09 2007 - 01:15:44 CDT)
  • daniel aguayo (Mon Apr 09 2007 - 01:08:04 CDT)
• VMD 1.8.6 Not Responding!
  • John Stone (Thu Jun 21 2007 - 22:58:37 CDT)
  • Vijaya Brahma (Thu Jun 21 2007 - 22:40:47 CDT)
  • John Stone (Thu Jun 21 2007 - 10:45:07 CDT)
  • Axel Kohlmeyer (Thu Jun 21 2007 - 10:37:44 CDT)
  • John Stone (Thu Jun 21 2007 - 00:28:07 CDT)
  • Vijaya Brahma (Wed Jun 20 2007 - 23:31:27 CDT)
  • John Stone (Mon Jun 18 2007 - 16:04:51 CDT)
  • Axel Kohlmeyer (Mon Jun 18 2007 - 09:49:47 CDT)
  • Vijaya Brahma (Sun Jun 17 2007 - 23:59:06 CDT)
• vmd 1.8.6 on MacOS X, with python support, anyone?
  • Jan Rychter (Tue May 01 2007 - 14:29:46 CDT)
  • John Stone (Tue May 01 2007 - 12:35:50 CDT)
  • Jan Rychter (Mon Apr 30 2007 - 05:39:33 CDT)
• VMD 1.8.6 test versions available, feedback requested...
  • John Stone (Mon Nov 20 2006 - 15:26:33 CST)
• VMD 1.8.6, XTC format on Mac OS X 10.5.1
  • Christoph Weber (Sat Jan 26 2008 - 16:59:17 CST)
  • Axel Kohlmeyer (Sat Jan 26 2008 - 13:29:35 CST)
  • Tony Sheh (Sat Jan 26 2008 - 11:56:01 CST)
• VMD 1.8.6b binaries for win32?
  • John Stone (Thu Mar 15 2007 - 18:48:14 CDT)
  • John Stone (Wed Mar 14 2007 - 17:08:48 CDT)
  • Jacob Poehlsgaard (Wed Mar 14 2007 - 10:14:45 CDT)
• vmd 1.8.7 - console window fullscreen
  • Axel Kohlmeyer (Fri Dec 25 2009 - 02:23:27 CST)
  • gbellesia_at_chem.ucsb.edu (Thu Dec 24 2009 - 16:20:17 CST)
• vmd 1.8.7 - problems loading vmd state file
  • lucie delemotte (Fri Jun 12 2009 - 11:17:35 CDT)
  • John Stone (Fri Jun 12 2009 - 09:44:29 CDT)
  • Marius Retegan (Fri Jun 12 2009 - 08:47:39 CDT)
  • John Stone (Thu Jun 11 2009 - 21:30:22 CDT)
  • John Stone (Thu Jun 11 2009 - 08:59:54 CDT)
  • John Stone (Wed Jun 10 2009 - 11:47:28 CDT)
  • John Stone (Tue Jun 09 2009 - 11:26:01 CDT)
  • Marius Retegan (Tue Jun 09 2009 - 11:30:43 CDT)
  • John Stone (Tue Jun 09 2009 - 09:48:41 CDT)
  • John Stone (Mon Jun 08 2009 - 16:15:15 CDT)
  • John Stone (Fri Jun 05 2009 - 11:04:08 CDT)
  • Axel Kohlmeyer (Fri Jun 05 2009 - 11:09:59 CDT)
  • John Stone (Wed Jun 03 2009 - 14:05:48 CDT)
  • Axel Kohlmeyer (Wed Jun 03 2009 - 08:16:06 CDT)
  • lucie delemotte (Wed Jun 03 2009 - 02:36:51 CDT)
  • John Stone (Tue Jun 02 2009 - 14:01:12 CDT)
  • lucie delemotte (Tue Jun 02 2009 - 11:42:38 CDT)
  • John Stone (Tue Jun 02 2009 - 11:15:39 CDT)
  • lucie delemotte (Tue Jun 02 2009 - 10:31:26 CDT)
  • lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
  • John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
• VMD 1.8.7 alpha 62 posted for all mainstream platforms...
  • John Stone (Fri Mar 20 2009 - 03:30:48 CDT)
• VMD 1.8.7 amd64 python libs?
  • John Stone (Wed Dec 02 2009 - 11:48:41 CST)
  • Ondrej Marsalek (Wed Dec 02 2009 - 11:22:21 CST)
  • John Stone (Wed Dec 02 2009 - 11:16:06 CST)
  • John Stone (Wed Dec 02 2009 - 10:29:56 CST)
  • John Stone (Mon Nov 23 2009 - 17:30:30 CST)
  • Tru Huynh (Mon Nov 23 2009 - 10:30:17 CST)
• VMD 1.8.7 and lammpsplugin.so error
  • Stephanie Teich-McGoldrick (Fri Jan 07 2011 - 11:02:33 CST)
  • Axel Kohlmeyer (Wed Jan 05 2011 - 16:48:16 CST)
  • Stephanie Teich-McGoldrick (Wed Jan 05 2011 - 15:14:59 CST)
• VMD 1.8.7 and NVIDIA 256.35 driver problems (CUDA issue?)
  • John Stone (Thu Jun 24 2010 - 14:58:59 CDT)
  • ben rodriguez (Thu Jun 24 2010 - 14:29:18 CDT)
• VMD 1.8.7 beta 1 posted for download...
  • John Stone (Wed Apr 29 2009 - 22:38:21 CDT)
  • Low Soo Mei (Wed Apr 29 2009 - 22:35:05 CDT)
  • John Stone (Wed Apr 29 2009 - 15:06:27 CDT)
• VMD 1.8.7 beta 2 posted for download
  • John Stone (Wed May 13 2009 - 14:09:40 CDT)
• VMD 1.8.7 beta 3 posted for download...
  • Axel Kohlmeyer (Mon May 25 2009 - 11:42:59 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 19:52:41 CDT)
  • Thomas Evangelidis (Wed May 20 2009 - 23:20:38 CDT)
  • Axel Kohlmeyer (Mon May 18 2009 - 20:29:44 CDT)
  • John Stone (Mon May 18 2009 - 15:24:21 CDT)
• VMD 1.8.7 Beta 5 -- Possible bug when typing in the VMD menu boxes.
  • JT (Mon Jun 01 2009 - 17:29:07 CDT)
• VMD 1.8.7 beta 5 posted for download
  • John Stone (Mon Jun 01 2009 - 16:11:31 CDT)
• VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card
  • John Stone (Mon Jun 22 2009 - 09:29:11 CDT)
  • Baumert, Uwe Dr.rer.nat. (Mon Jun 22 2009 - 04:18:54 CDT)
• VMD 1.8.7 build with VRPN 7.23
  • John Stone (Mon Dec 07 2009 - 14:42:26 CST)
  • Mark Cunningham (Mon Dec 07 2009 - 14:09:59 CST)
• VMD 1.8.7 CUDA on Mac OS X 10.6.1
  • Mengjuei Hsieh (Mon Oct 12 2009 - 19:23:08 CDT)
  • John Stone (Mon Oct 12 2009 - 15:36:23 CDT)
  • Mengjuei Hsieh (Sat Oct 10 2009 - 18:23:52 CDT)
• vmd 1.8.7 getting the terminal free
  • Axel Kohlmeyer (Fri Jan 08 2010 - 08:03:21 CST)
  • Nuno Sousa Cerqueira (Fri Jan 08 2010 - 07:38:29 CST)
  • Axel Kohlmeyer (Fri Jan 08 2010 - 06:26:43 CST)
  • Axel Kohlmeyer (Fri Jan 08 2010 - 06:25:40 CST)
  • maria goranovic (Fri Jan 08 2010 - 05:20:46 CST)
• VMD 1.8.7 hangs on launch
  • Marek Maly (Fri Mar 26 2010 - 18:07:55 CDT)
  • Leif Halvorsen (Fri Mar 26 2010 - 14:37:03 CDT)
• VMD 1.8.7 installation problem
  • Axel Kohlmeyer (Mon Jul 20 2009 - 08:49:00 CDT)
  • Ajeeta kaushiki (Mon Jul 20 2009 - 06:55:41 CDT)
• vmd 1.8.7 not spawn new console: feature,bug, or just different?
  • John Stone (Thu Jun 25 2009 - 01:06:02 CDT)
  • Olaf Lenz (Thu Jun 25 2009 - 00:52:39 CDT)
  • John Stone (Wed Jun 24 2009 - 15:24:32 CDT)
  • Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
• vmd 1.8.7 on Intel 64 bit: segmentation fault
  • Bogdan Costescu (Mon Dec 14 2009 - 06:21:14 CST)
  • Rob (Sun Dec 13 2009 - 18:33:35 CST)
  • John Stone (Fri Dec 11 2009 - 14:34:23 CST)
  • Rob (Fri Dec 11 2009 - 08:53:35 CST)
  • Axel Kohlmeyer (Tue Dec 08 2009 - 16:53:15 CST)
  • John Stone (Tue Dec 08 2009 - 12:34:57 CST)
  • Rob (Tue Dec 08 2009 - 08:05:26 CST)
  • John Stone (Mon Dec 07 2009 - 21:45:44 CST)
  • Rob (Mon Dec 07 2009 - 21:25:11 CST)
• vmd 1.8.7 on Intel 64 bit: segmentation fault (however: 1.8.6 works!)
  • John Stone (Tue Dec 08 2009 - 01:17:25 CST)
  • Rob (Tue Dec 08 2009 - 01:03:29 CST)
• vmd 1.8.7 on Intel 64 bit: segmentation fault"
  • John Stone (Thu Dec 10 2009 - 10:15:06 CST)
  • Bogdan Costescu (Thu Dec 10 2009 - 06:14:34 CST)
  • Rob (Wed Dec 09 2009 - 22:24:16 CST)
• VMD 1.8.7 terminal window
  • Gianluca Interlandi (Sat Sep 25 2010 - 20:02:55 CDT)
  • John Stone (Mon Sep 20 2010 - 00:23:29 CDT)
  • Gianluca Interlandi (Mon Sep 20 2010 - 00:10:26 CDT)
• VMD 1.8.7b3 and desktop effects on Fedora 10
  • John Stone (Wed May 20 2009 - 20:54:32 CDT)
  • Axel Kohlmeyer (Wed May 20 2009 - 08:43:16 CDT)
  • Nicolas Sapay (Wed May 20 2009 - 07:48:33 CDT)
• VMD 1.8.7beta1 doesn't close OpenGL window
  • John Stone (Tue May 05 2009 - 09:27:10 CDT)
  • Olaf Lenz (Tue May 05 2009 - 09:07:35 CDT)
  • Axel Kohlmeyer (Tue May 05 2009 - 08:26:03 CDT)
  • Olaf Lenz (Tue May 05 2009 - 07:53:57 CDT)
• vmd 1.8.7CUDA/1.8.7/1.8.6 can not start
  • John Stone (Tue Jan 12 2010 - 10:27:04 CST)
  • Guo Zhi (Tue Jan 12 2010 - 00:02:08 CST)
  • Guo Zhi (Wed Jan 06 2010 - 21:48:14 CST)
  • John Stone (Wed Jan 06 2010 - 12:56:47 CST)
  • Guo Zhi (Sun Jan 03 2010 - 22:19:29 CST)
  • John Stone (Sun Jan 03 2010 - 17:46:21 CST)
  • Guo Zhi (Sun Jan 03 2010 - 11:41:03 CST)
  • John Stone (Sun Jan 03 2010 - 01:56:14 CST)
  • Guo Zhi (Sat Jan 02 2010 - 18:16:54 CST)
• vmd 1.8.b does not start up
  • Axel Kohlmeyer (Thu Feb 16 2006 - 22:11:29 CST)
  • Prashanth Athri (Thu Feb 16 2006 - 17:59:50 CST)
• vmd 1.8a21
  • John Stone (Sun Apr 16 2006 - 17:06:07 CDT)
  • Mgr. Lubos Vrbka (Sun Apr 16 2006 - 15:31:57 CDT)
  • John Stone (Sun Apr 16 2006 - 13:05:59 CDT)
  • Dan Fishelovitch (Sun Apr 16 2006 - 10:02:34 CDT)
• VMD 1.8a28 bundle for MacOS X 10.2 available...
  • Justin Gullingsrud (Fri Sep 27 2002 - 19:35:05 CDT)
  • Mauricio Carrillo Tripp (Fri Sep 27 2002 - 19:22:30 CDT)
  • MengJuei Hsieh (Fri Sep 27 2002 - 04:18:46 CDT)
  • John Stone (Thu Sep 26 2002 - 18:19:18 CDT)
• VMD 1.9 beta 1 posted for download...
  • John Stone (Wed Feb 23 2011 - 15:05:00 CST)
  • Jérôme Hénin (Wed Feb 23 2011 - 03:47:20 CST)
  • John Stone (Wed Feb 23 2011 - 00:11:12 CST)
  • John Stone (Tue Feb 22 2011 - 12:45:55 CST)
  • Peter C. Lai (Tue Feb 22 2011 - 12:51:56 CST)
  • Peter C. Lai (Tue Feb 22 2011 - 12:39:00 CST)
  • John Stone (Fri Feb 18 2011 - 11:54:35 CST)
  • Joseph Bylund (Fri Feb 18 2011 - 11:19:38 CST)
  • Axel Kohlmeyer (Thu Feb 17 2011 - 10:15:08 CST)
  • John Stone (Thu Feb 17 2011 - 09:36:22 CST)
  • John Stone (Thu Feb 17 2011 - 09:44:59 CST)
  • Julie Grouleff (Thu Feb 17 2011 - 09:21:49 CST)
  • Bjoern Olausson (Thu Feb 17 2011 - 05:37:48 CST)
  • John Stone (Thu Feb 17 2011 - 01:08:54 CST)
  • snoze pa (Wed Feb 16 2011 - 17:54:39 CST)
  • John Stone (Wed Feb 16 2011 - 16:08:36 CST)
  • Vlad Cojocaru (Wed Feb 16 2011 - 15:11:06 CST)
  • John Stone (Wed Feb 16 2011 - 11:21:31 CST)
  • John Stone (Tue Feb 15 2011 - 19:26:31 CST)
• VMD 1.9 beta 2 posted for download...
  • John Stone (Mon Feb 28 2011 - 21:44:36 CST)
• VMD 1.9 beta 3 posted for download...
  • John Stone (Wed Mar 09 2011 - 11:06:56 CST)
  • Cesar Millan (Tue Mar 08 2011 - 19:14:30 CST)
  • John Stone (Tue Mar 08 2011 - 09:54:59 CST)
  • Cesar Millan (Mon Mar 07 2011 - 17:43:46 CST)
  • John Stone (Mon Mar 07 2011 - 15:53:04 CST)
  • Cesar Millan (Mon Mar 07 2011 - 15:47:47 CST)
  • John Stone (Mon Mar 07 2011 - 14:53:43 CST)
• VMD 1.9 builds on MACOSXX86_64
  • Joshua A. Anderson (Fri Mar 25 2011 - 12:54:56 CDT)
  • John Stone (Thu Mar 24 2011 - 21:56:32 CDT)
  • Joshua A. Anderson (Tue Mar 22 2011 - 08:55:00 CDT)
• VMD 1.9 installation on linux
  • Shyno Mathew (Thu Jun 14 2012 - 11:17:52 CDT)
  • Axel Kohlmeyer (Wed Jun 13 2012 - 20:06:28 CDT)
  • bsnmrem-obj_at_yahoo.com (Wed Jun 13 2012 - 19:18:47 CDT)
  • Axel Kohlmeyer (Wed Jun 13 2012 - 09:00:11 CDT)
  • Shyno Mathew (Wed Jun 13 2012 - 08:09:43 CDT)
• vmd 1.9 sur doesn't work
  • AB (Tue Aug 02 2011 - 13:58:43 CDT)
• VMD 1.9.1 and OS X 10.10 - display freezes
  • zhenxing wang (Wed Jul 08 2015 - 11:04:46 CDT)
  • Sampath, Janani (Tue Jul 07 2015 - 13:38:55 CDT)
• VMD 1.9.1 becomes unresponsive
  • John Stone (Tue May 29 2012 - 11:16:40 CDT)
  • Jim Kress (Sat May 26 2012 - 15:47:08 CDT)
• vmd 1.9.1 beta - quicksurf rendering artifacts
  • John Stone (Thu Jan 05 2012 - 14:08:48 CST)
  • Ajasja LjubetiÄ� (Wed Jan 04 2012 - 13:52:28 CST)
  • John Stone (Wed Jan 04 2012 - 09:28:23 CST)
  • Ajasja LjubetiÄ� (Wed Jan 04 2012 - 05:28:06 CST)
  • Ajasja LjubetiÄ� (Wed Jan 04 2012 - 05:08:18 CST)
• VMD 1.9.1 beta 1 (RMSDTT bug)
  • John Stone (Tue Jan 03 2012 - 10:11:29 CST)
• VMD 1.9.1 beta 1 posted for download...
  • FX (Thu Jan 05 2012 - 15:28:58 CST)
  • Bjoern Olausson (Tue Jan 03 2012 - 01:32:26 CST)
  • John Stone (Fri Dec 30 2011 - 01:02:15 CST)
• VMD 1.9.1 beta 2 to be posted tonight...
  • John Stone (Thu Jan 26 2012 - 09:34:20 CST)
  • Ajasja LjubetiÄ� (Thu Jan 26 2012 - 07:06:28 CST)
  • Axel Kohlmeyer (Thu Jan 26 2012 - 06:52:27 CST)
  • Felix Frolow (Thu Jan 26 2012 - 06:32:50 CST)
  • Ajasja LjubetiÄ� (Thu Jan 26 2012 - 03:04:29 CST)
  • John Stone (Wed Jan 25 2012 - 19:35:42 CST)
  • John Stone (Wed Jan 25 2012 - 16:08:28 CST)
• vmd 1.9.1 Centos
  • Tru Huynh (Mon Jul 30 2012 - 16:58:21 CDT)
  • Irene Newhouse (Thu Jul 26 2012 - 01:24:29 CDT)
  • John Stone (Wed Jul 25 2012 - 16:15:48 CDT)
  • Axel Kohlmeyer (Wed Jul 25 2012 - 03:20:26 CDT)
  • oguz gurbulak (Wed Jul 25 2012 - 02:04:08 CDT)
  • John Stone (Tue Jul 24 2012 - 10:02:13 CDT)
  • oguz gurbulak (Tue Jul 24 2012 - 04:12:29 CDT)
• VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680
  • Tru Huynh (Thu Dec 13 2012 - 11:41:46 CST)
  • John Stone (Tue Dec 11 2012 - 08:59:37 CST)
  • Bogdan Costescu (Tue Dec 11 2012 - 07:50:23 CST)
  • Tru Huynh (Tue Dec 11 2012 - 05:10:38 CST)
  • Tru Huynh (Mon Dec 10 2012 - 16:58:57 CST)
  • Tru Huynh (Mon Dec 10 2012 - 15:46:45 CST)
  • Tru Huynh (Mon Dec 10 2012 - 14:11:53 CST)
  • John Stone (Mon Dec 10 2012 - 11:40:11 CST)
  • Axel Kohlmeyer (Mon Dec 10 2012 - 10:22:49 CST)
  • Tru Huynh (Mon Dec 10 2012 - 09:14:43 CST)
  • Tru Huynh (Mon Dec 10 2012 - 09:19:55 CST)
• VMD 1.9.1 for 64-bit Windows
  • John Stone (Thu Mar 21 2013 - 11:12:02 CDT)
  • Ajasja LjubetiÄ� (Wed Mar 20 2013 - 08:12:34 CDT)
  • Jernej Zidar (Tue Mar 19 2013 - 21:18:11 CDT)
• VMD 1.9.1 installation
  • Axel Kohlmeyer (Fri Aug 22 2014 - 03:43:18 CDT)
  • Annika Wittenbecher (Fri Aug 22 2014 - 01:59:24 CDT)
• VMD 1.9.1 namdenergy plugin problem with GPU acceleration
  • Jim Phillips (Tue Jul 09 2013 - 13:57:02 CDT)
  • John Stone (Tue Jul 09 2013 - 14:02:01 CDT)
  • John Stone (Tue Jul 09 2013 - 13:45:47 CDT)
  • Alessandro Mascioni (Sun Jun 30 2013 - 15:42:38 CDT)
• VMD 1.9.1 on Macosx Snow Leopard: items greyed out
  • John Stone (Tue Aug 14 2012 - 09:30:05 CDT)
  • John Stone (Tue Aug 14 2012 - 09:10:05 CDT)
  • Passerone, Daniele (Tue Aug 14 2012 - 04:14:17 CDT)
• VMD 1.9.1 python interpreter
  • John Stone (Wed Aug 08 2012 - 16:32:20 CDT)
  • Carolyn Phillips (Sat Aug 04 2012 - 09:45:50 CDT)
  • Carolyn Phillips (Sat Aug 04 2012 - 09:24:27 CDT)
  • John Stone (Tue Jul 31 2012 - 19:45:06 CDT)
  • Carolyn Phillips (Tue Jul 31 2012 - 18:54:23 CDT)
  • Carolyn Phillips (Tue Jul 31 2012 - 19:00:26 CDT)
• VMD 1.9.1 src // GCC 4.7.0 - Error compiling plugins directory
  • John Stone (Tue Dec 18 2012 - 20:25:42 CST)
  • Adam Brenner (Tue Dec 18 2012 - 20:27:25 CST)
  • Adam Brenner (Tue Dec 18 2012 - 20:17:43 CST)
  • John Stone (Tue Dec 18 2012 - 20:13:52 CST)
  • Adam Brenner (Tue Dec 18 2012 - 19:32:00 CST)
• VMD 1.9.2 32 bit Linux
  • John Stone (Fri Oct 02 2015 - 22:03:22 CDT)
  • Gianluca Interlandi (Fri Oct 02 2015 - 18:00:35 CDT)
• VMD 1.9.2 b1 OptiX Tachyon Error
  • John Stone (Fri Sep 26 2014 - 13:40:48 CDT)
  • Stober, Spencer T (Fri Sep 26 2014 - 12:12:14 CDT)
  • John Stone (Fri Sep 26 2014 - 10:43:03 CDT)
  • Stober, Spencer T (Fri Sep 26 2014 - 10:35:07 CDT)
  • John Stone (Fri Sep 26 2014 - 09:55:36 CDT)
  • Stober, Spencer T (Fri Sep 26 2014 - 09:40:07 CDT)
• VMD 1.9.2 beta 1 posted for download...
  • John Stone (Wed Sep 17 2014 - 08:24:44 CDT)
  • Tristan Croll (Wed Sep 17 2014 - 02:02:55 CDT)
  • John Stone (Sat Sep 13 2014 - 00:03:12 CDT)
• VMD 1.9.2 beta 2 posted for download...
  • Sujata Roy (Tue Dec 23 2014 - 05:41:12 CST)
  • John Stone (Mon Dec 22 2014 - 21:03:04 CST)
• VMD 1.9.2 Crashes (CUDA,VRPN)
  • Munir Ahmad (Tue Feb 02 2016 - 04:49:27 CST)
  • John Stone (Thu Jan 28 2016 - 10:28:17 CST)
  • Munir Ahmad (Wed Jan 27 2016 - 07:35:50 CST)
• VMD 1.9.2 crashing at startup in Mac OS X El Capitan
  • John Stone (Fri Mar 31 2017 - 13:29:29 CDT)
  • Janakiraman Balachandran (Wed Mar 29 2017 - 08:57:41 CDT)
• VMD 1.9.2 released!
  • Francesco Pietra (Wed Dec 31 2014 - 09:17:55 CST)
  • John Stone (Tue Dec 30 2014 - 13:47:29 CST)
• vmd 1.9.2a11macx86_64 on OSX 10.8
  • Raul Araya (Wed Dec 19 2012 - 07:28:33 CST)
• VMD 1.9.2a39_64 segmentation fault MacOS
  • John Stone (Wed Jul 09 2014 - 15:50:21 CDT)
  • Mark Wistey (Tue Jul 08 2014 - 19:05:07 CDT)
  • Maxim Belkin (Tue Jul 08 2014 - 18:48:09 CDT)
  • Mark Wistey (Tue Jul 08 2014 - 18:28:09 CDT)
• VMD 1.9.3
  • John Stone (Wed Jun 29 2016 - 09:45:22 CDT)
  • Sebastian Schneider (Tue Jun 28 2016 - 15:33:26 CDT)
  • Bruce D'Amora (Tue Jun 28 2016 - 14:48:43 CDT)
  • Sebastian Schneider (Tue Jun 28 2016 - 12:07:28 CDT)
• vmd 1.9.3 A
  • John Stone (Tue Nov 24 2015 - 12:54:08 CST)
  • Christian Wohlschlager (Tue Nov 17 2015 - 01:31:46 CST)
• VMD 1.9.3 alpha
  • John Stone (Mon Mar 30 2015 - 17:11:36 CDT)
  • John Stone (Mon Mar 30 2015 - 16:59:10 CDT)
  • James Kress (Fri Mar 27 2015 - 09:23:23 CDT)
  • Matic Kisovec (Fri Mar 27 2015 - 07:58:47 CDT)
• VMD 1.9.3 beta 1 posted for download...
  • John Stone (Fri Jul 22 2016 - 23:21:53 CDT)
  • John Stone (Fri Jul 22 2016 - 11:30:06 CDT)
  • John Stone (Fri Jul 22 2016 - 09:50:34 CDT)
  • John Stone (Thu Jul 21 2016 - 16:35:01 CDT)
  • John Stone (Thu Jul 21 2016 - 14:11:16 CDT)
  • John Stone (Thu Jul 21 2016 - 14:08:06 CDT)
  • Bruce D'Amora (Thu Jul 21 2016 - 11:04:32 CDT)
  • James Kress (Thu Jul 21 2016 - 08:21:13 CDT)
  • John Stone (Wed Jul 20 2016 - 23:33:49 CDT)
• VMD 1.9.3 beta 4 posted for download...
  • John Stone (Sat Oct 29 2016 - 00:31:18 CDT)
• vmd 1.9.3 beta release-regd
  • Mohan maruthi sena (Tue May 31 2016 - 01:06:00 CDT)
• VMD 1.9.3 compiled from source does not work
  • John Stone (Fri Jan 24 2020 - 22:56:16 CST)
  • Oleksii Zdorevskyi (Fri Jan 24 2020 - 11:06:12 CST)
  • Oleksii Zdorevskyi (Wed Jan 22 2020 - 15:24:58 CST)
• VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux.
  • yjcoshc_at_gmail.com (Thu Jun 01 2017 - 09:58:42 CDT)
  • John Stone (Wed May 31 2017 - 16:33:16 CDT)
  • yjcoshc (Sat Apr 29 2017 - 06:43:53 CDT)
  • yjcoshc_at_gmail.com (Thu Mar 02 2017 - 19:36:47 CST)
  • John Stone (Thu Mar 02 2017 - 14:25:30 CST)
  • yjcoshc_at_gmail.com (Tue Feb 28 2017 - 22:11:21 CST)
  • John Stone (Tue Feb 28 2017 - 12:57:57 CST)
  • yjcoshc_at_gmail.com (Fri Feb 24 2017 - 20:54:27 CST)
• VMD 1.9.3 GLSL rendering not available on Linux cluster Install
  • Vermaas, Joshua (Tue Mar 21 2017 - 09:55:47 CDT)
  • Muralikrishna Raju (Mon Mar 20 2017 - 22:25:08 CDT)
• VMD 1.9.3 Linux installation
  • John Stone (Tue Jan 07 2020 - 15:21:49 CST)
  • John Stone (Tue Jan 07 2020 - 14:50:52 CST)
  • Chang, Christopher (Fri Dec 13 2019 - 18:27:05 CST)
• VMD 1.9.3 omnidirectional rendering
  • Sebastian Schneider (Thu Aug 25 2016 - 08:02:16 CDT)
  • Sebastian Schneider (Wed Aug 24 2016 - 15:48:59 CDT)
  • Vermaas, Joshua (Tue Aug 23 2016 - 15:55:57 CDT)
  • Sebastian Schneider (Tue Aug 23 2016 - 14:22:59 CDT)
  • Sebastian Schneider (Mon Aug 15 2016 - 14:59:40 CDT)
  • John Stone (Mon Aug 15 2016 - 15:02:44 CDT)
  • John Stone (Fri Aug 12 2016 - 14:23:17 CDT)
  • Sebastian Schneider (Fri Aug 12 2016 - 10:18:04 CDT)
• VMD 1.9.3 on 64-bit macOS
  • FX (Fri Dec 16 2016 - 04:21:15 CST)
  • John Stone (Thu Dec 15 2016 - 11:37:46 CST)
  • FX (Thu Dec 15 2016 - 06:42:20 CST)
  • FX (Thu Dec 15 2016 - 05:05:59 CST)
  • John Stone (Tue Dec 06 2016 - 17:49:43 CST)
  • FX (Fri Dec 02 2016 - 05:25:07 CST)
• VMD 1.9.3 Only Loads 2 Plugins
  • John Stone (Thu Oct 31 2019 - 20:48:13 CDT)
  • Mortimer Hemmit (Thu Oct 31 2019 - 19:23:04 CDT)
• VMD 1.9.3 released!
  • jrhau lung (Thu Dec 01 2016 - 02:04:04 CST)
  • John Stone (Thu Dec 01 2016 - 01:30:55 CST)
• vmd 1.9.3 won't open in mac after catalina update this morning
  • John Stone (Mon Oct 14 2019 - 22:11:49 CDT)
  • Tru Huynh (Tue Oct 08 2019 - 13:28:58 CDT)
  • Evelyn Maizels (Tue Oct 08 2019 - 11:15:22 CDT)
• vmd 1.9.4
  • omid gh (Thu Apr 23 2020 - 12:10:59 CDT)
• VMD 1.9.4 (RTRT) with python3 and numpy on Ubuntu
  • Bruininks, B.M.H. (Thu Nov 25 2021 - 03:25:12 CST)
• VMD 1.9.4 a48 fails to build from source
  • yjcoshc (Wed Nov 04 2020 - 03:22:28 CST)
  • yjcoshc (Tue Nov 03 2020 - 19:22:56 CST)
• VMD 1.9.4 alpha 43 test builds posted...
  • John Stone (Thu Jun 11 2020 - 15:24:45 CDT)
• VMD 1.9.4 alpha 8 posted for download...
  • John Stone (Wed Aug 30 2017 - 12:14:19 CDT)
• VMD 1.9.4 as a Python Module
  • Vermaas, Josh (Thu Mar 10 2022 - 08:50:16 CST)
  • Dominique Mias-Lucquin (Wed Mar 09 2022 - 05:15:39 CST)
• VMD 1.9.4 crash on MacOS
  • Adam MatÄ›j (Thu Sep 05 2019 - 02:55:20 CDT)
• VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0)
  • John Stone (Wed Apr 06 2022 - 09:48:56 CDT)
  • Dominique Mias-Lucquin (Wed Apr 06 2022 - 07:58:22 CDT)
  • Vermaas, Josh (Wed Apr 06 2022 - 08:04:56 CDT)
  • John Stone (Mon Apr 04 2022 - 11:30:35 CDT)
  • Josh Vermaas (Mon Apr 04 2022 - 11:15:30 CDT)
  • yjcoshc (Mon Apr 04 2022 - 11:18:41 CDT)
  • John Stone (Mon Apr 04 2022 - 10:20:26 CDT)
  • John Stone (Mon Apr 04 2022 - 10:11:51 CDT)
  • yjcoshc (Mon Apr 04 2022 - 10:14:48 CDT)
  • yjcoshc (Mon Apr 04 2022 - 10:06:35 CDT)
• VMD 1.9.4 for Windows?
  • Pawel Kedzierski (Fri Jun 01 2018 - 02:54:26 CDT)
• VMD 1.9.4 Linux
  • McGuire, Kelly (Fri Apr 20 2018 - 10:57:29 CDT)
• VMD 1.9.4 won't open .crd files
  • mohamed marzouk (Tue Apr 06 2021 - 02:50:07 CDT)
  • Alex Nazlidis (Mon Apr 05 2021 - 19:10:18 CDT)
  • Vermaas, Josh (Mon Apr 05 2021 - 18:18:20 CDT)
  • Alex Nazlidis (Mon Apr 05 2021 - 16:49:29 CDT)
  • Vermaas, Josh (Mon Apr 05 2021 - 16:37:56 CDT)
  • Alex Nazlidis (Mon Apr 05 2021 - 15:41:45 CDT)
  • Alex Nazlidis (Mon Apr 05 2021 - 15:31:11 CDT)
  • John Stone (Mon Apr 05 2021 - 15:33:19 CDT)
• VMD 1.9.4.a53 crashes on windows 11
  • John Stone (Fri Nov 04 2022 - 14:21:40 CDT)
  • John Stone (Fri Nov 04 2022 - 14:19:07 CDT)
  • Stefan Boresch (Fri Nov 04 2022 - 02:15:43 CDT)
  • Atanu Acharya (Thu Nov 03 2022 - 23:06:27 CDT)
  • Chris Taylor (Thu Nov 03 2022 - 22:51:17 CDT)
  • John Stone (Thu Nov 03 2022 - 13:44:56 CDT)
  • Atanu Acharya (Thu Nov 03 2022 - 11:01:49 CDT)
• VMD 1.9.4a31 segmentation fault on OpenSUSE 15.1
  • John Stone (Tue Jul 16 2019 - 15:37:23 CDT)
  • Steven Wang (Tue Jul 16 2019 - 14:43:55 CDT)
• VMD 1.9.4a38 build for macOS Catalina
  • John Stone (Mon Dec 09 2019 - 08:52:07 CST)
  • John Stone (Mon Dec 09 2019 - 08:42:46 CST)
  • John Stone (Mon Dec 09 2019 - 08:37:49 CST)
  • FX (Mon Dec 09 2019 - 02:24:35 CST)
  • Edward Ditler (Mon Dec 09 2019 - 00:58:42 CST)
  • FX (Sun Dec 08 2019 - 07:14:24 CST)
  • FX (Sun Dec 08 2019 - 05:10:39 CST)
  • FX (Sun Dec 08 2019 - 04:31:13 CST)
  • John Stone (Sat Dec 07 2019 - 19:20:24 CST)
  • Gumbart, JC (Sat Dec 07 2019 - 16:29:06 CST)
  • FX (Sat Dec 07 2019 - 11:43:51 CST)
  • FX (Sat Dec 07 2019 - 11:28:12 CST)
  • FX (Sat Dec 07 2019 - 11:12:27 CST)
  • John Stone (Sat Dec 07 2019 - 10:34:04 CST)
  • FX (Sat Dec 07 2019 - 07:32:21 CST)
  • FX (Thu Dec 05 2019 - 07:58:46 CST)
  • FX (Thu Dec 05 2019 - 04:46:46 CST)
• VMD 1.9.4a42 test builds posted...
  • John Stone (Sat May 30 2020 - 16:28:54 CDT)
  • John Stone (Sat May 30 2020 - 16:31:14 CDT)
  • FX (Sat May 30 2020 - 04:04:48 CDT)
  • John Stone (Fri May 29 2020 - 16:51:53 CDT)
• VMD 1.9.4a43 Rev 6 for MacOS X Catalina
  • miyatake (Thu Jul 02 2020 - 22:09:01 CDT)
• VMD 1.9.4a50 64-bit Windows test build posted
  • John Stone (Wed May 19 2021 - 09:13:43 CDT)
  • Stefan Boresch (Wed May 19 2021 - 03:28:31 CDT)
  • John Stone (Wed Dec 16 2020 - 14:20:44 CST)
  • Stefan Boresch (Wed Dec 16 2020 - 14:16:41 CST)
  • John Stone (Wed Dec 16 2020 - 14:07:55 CST)
  • Stefan Boresch (Wed Dec 16 2020 - 13:49:53 CST)
  • John Stone (Wed Dec 16 2020 - 10:57:22 CST)
  • Stefan Boresch (Wed Dec 16 2020 - 10:31:30 CST)
  • John Stone (Wed Dec 16 2020 - 09:12:02 CST)
  • Stefan Boresch (Wed Dec 16 2020 - 04:44:38 CST)
  • John Stone (Wed Dec 16 2020 - 01:57:17 CST)
  • Stefan Boresch (Tue Dec 15 2020 - 15:27:01 CST)
  • John Stone (Tue Dec 15 2020 - 15:03:03 CST)
  • Stefan Boresch (Tue Dec 15 2020 - 13:24:22 CST)
  • John Stone (Tue Dec 15 2020 - 12:06:50 CST)
  • Jérôme Hénin (Tue Dec 15 2020 - 11:09:20 CST)
  • John Stone (Tue Dec 15 2020 - 11:12:20 CST)
  • John Stone (Tue Dec 15 2020 - 11:16:05 CST)
  • John Stone (Tue Dec 15 2020 - 11:06:47 CST)
  • Jérôme Hénin (Tue Dec 15 2020 - 10:46:55 CST)
  • Stefan Boresch (Tue Dec 15 2020 - 10:08:42 CST)
  • Carlos Simmerling (Tue Dec 15 2020 - 09:58:37 CST)
  • John Stone (Tue Dec 15 2020 - 09:52:45 CST)
  • Stefan Boresch (Tue Dec 15 2020 - 09:33:50 CST)
  • John Stone (Tue Dec 15 2020 - 09:17:09 CST)
  • Stefan Boresch (Tue Dec 15 2020 - 04:11:28 CST)
  • John Stone (Mon Dec 14 2020 - 23:46:50 CST)
• VMD 1.9.4a50 test versions for MacOS Big Sur -- both x86 and ARM64 (M1)
  • John Stone (Thu Dec 31 2020 - 12:00:07 CST)
  • Pacci Evaristo, Felipe Fabricio (Mon Dec 14 2020 - 11:27:17 CST)
  • John Stone (Mon Dec 14 2020 - 09:56:07 CST)
  • Pacci Evaristo, Felipe Fabricio (Mon Dec 14 2020 - 09:37:03 CST)
  • John Stone (Mon Dec 14 2020 - 01:55:40 CST)
• VMD 1.9.4a53 on Windows 11 crashing frequently
  • Diego Gomes (Thu May 02 2024 - 10:01:42 CDT)
  • Lohry, David Patrick (Wed Apr 17 2024 - 07:48:45 CDT)
  • Jason Smith (Tue Apr 16 2024 - 21:21:57 CDT)
  • Lohry, David Patrick (Tue Apr 16 2024 - 17:45:45 CDT)
• VMD 1.9.4a57 on Linux ?
  • Thibault TUBIANA (Fri Jul 22 2022 - 09:08:56 CDT)
• VMD 3D movies rendering
  • John Stone (Wed Aug 18 2010 - 13:53:52 CDT)
  • John Stone (Tue Aug 17 2010 - 13:47:35 CDT)
  • Shore, Jay (Tue Aug 17 2010 - 13:34:31 CDT)
  • John Stone (Tue Aug 17 2010 - 09:39:58 CDT)
  • John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
  • Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
  • Daniel Hornburg (Mon Aug 16 2010 - 05:07:59 CDT)
• VMD 3D stereo hardware
  • John Stone (Thu Mar 06 2008 - 10:25:46 CST)
  • Alba Colet Subirachs (Thu Mar 06 2008 - 03:16:25 CST)
• VMD 64-bit Windows OSPRay Initialization Error Possible Fix
  • Mortimer Hemmit (Thu May 04 2023 - 16:05:59 CDT)
  • Chris Taylor (Tue Feb 14 2023 - 22:41:23 CST)
  • Mortimer Hemmit (Tue Feb 14 2023 - 16:12:48 CST)
• VMD : Force Field Toolkit : Help
  • JC Gumbart (Mon Dec 10 2012 - 17:50:06 CST)
  • Esra Bozkurt (Mon Dec 10 2012 - 13:21:06 CST)
• VMD aborts when setting up MD simulation
  • John Stone (Fri Dec 18 2020 - 10:40:07 CST)
  • Tiglath Moradkhan (Mon Dec 14 2020 - 12:36:01 CST)
• VMD access using XWIN32 or X-Deep
  • Mario Valle (Fri Oct 12 2007 - 22:50:54 CDT)
  • John Stone (Fri Oct 12 2007 - 15:34:12 CDT)
  • Axel Kohlmeyer (Fri Oct 12 2007 - 14:08:30 CDT)
  • Deepangi Pandit (Fri Oct 12 2007 - 13:20:01 CDT)
  • Deepangi Pandit (Fri Oct 12 2007 - 11:35:52 CDT)
• VMD acts too slow
  • John Stone (Tue Aug 07 2007 - 21:03:37 CDT)
  • Roland Schmucki (Tue Aug 07 2007 - 20:38:49 CDT)
• VMD Align command
  • Daniel STERBULEAC (Mon Oct 19 2020 - 17:42:41 CDT)
  • Bassam Haddad (Mon Oct 19 2020 - 17:07:54 CDT)
  • Daniel STERBULEAC (Mon Oct 19 2020 - 15:33:46 CDT)
• VMD align to principal axis
  • kirtana S (Wed Sep 07 2011 - 13:47:51 CDT)
  • Axel Kohlmeyer (Tue Sep 06 2011 - 23:31:11 CDT)
  • kirtana S (Tue Sep 06 2011 - 22:06:04 CDT)
• VMD alpha builds
  • John Stone (Mon Jun 03 2019 - 23:12:21 CDT)
  • Jérôme Hénin (Mon Jun 03 2019 - 09:01:03 CDT)
• VMD analysis using NAMD plot
  • Richard Swenson (Wed Aug 29 2007 - 10:40:28 CDT)
  • Richard Swenson (Wed Aug 29 2007 - 10:42:59 CDT)
  • John Stone (Wed Aug 29 2007 - 11:03:24 CDT)
  • Philipp Schön (Wed Aug 29 2007 - 05:47:01 CDT)
• VMD and 3D visualization problems with Nvidia Quadro 4000
  • Karel Berka (Wed Jan 11 2012 - 10:43:13 CST)
  • John Stone (Tue Jan 10 2012 - 14:43:54 CST)
  • Karel Berka (Sat Dec 10 2011 - 15:29:36 CST)
• VMD and 3Dfx Glide
  • John Stone (Tue Aug 31 1999 - 09:16:59 CDT)
  • Massimiliano Stengel (Tue Aug 31 1999 - 08:44:05 CDT)
  • Massimiliano Stengel (Tue Aug 31 1999 - 06:47:27 CDT)
  • Ivo Hofacker (Mon Aug 30 1999 - 11:01:15 CDT)
  • John Stone (Mon Aug 30 1999 - 09:36:38 CDT)
  • Massimiliano Stengel (Mon Aug 30 1999 - 06:31:33 CDT)
• vmd and amber
  • Axel Kohlmeyer (Thu Jun 28 2007 - 16:14:49 CDT)
  • Francesco Pietra (Thu Jun 28 2007 - 16:08:37 CDT)
• VMD and Amber coordinates
  • rebeca (Tue Feb 16 2010 - 16:44:13 CST)
  • rebeca (Tue Feb 16 2010 - 13:35:07 CST)
  • John Stone (Tue Feb 16 2010 - 13:12:14 CST)
  • rebeca (Tue Feb 16 2010 - 12:31:52 CST)
• VMD and BigSur
  • Alex Peralvarez Marin (Thu Dec 17 2020 - 00:46:10 CST)
  • Alex Peralvarez Marin (Wed Dec 16 2020 - 08:32:01 CST)
  • John Stone (Thu Dec 17 2020 - 00:38:53 CST)
• vmd and catdcd
  • John Stone (Fri Sep 06 2002 - 14:04:13 CDT)
  • Liu, Zhanwu (Fri Sep 06 2002 - 12:43:22 CDT)
• VMD and Centos 6
  • Irene Newhouse (Sun Jan 22 2012 - 16:17:15 CST)
  • Irene Newhouse (Sun Jan 22 2012 - 14:39:16 CST)
  • Axel Kohlmeyer (Sun Jan 22 2012 - 10:19:06 CST)
  • Irene Newhouse (Sat Jan 21 2012 - 22:49:47 CST)
• VMD and CHARMm format
  • John Stone (Fri Sep 06 2002 - 15:39:07 CDT)
  • Nicolas Foloppe (Fri Aug 30 2002 - 04:54:19 CDT)
• VMD and chromium
  • Dave Pugmire (Mon Nov 03 2003 - 16:39:55 CST)
  • John Stone (Mon Nov 03 2003 - 15:47:03 CST)
  • Dave Pugmire (Fri Oct 31 2003 - 17:56:43 CST)
  • John Stone (Fri Oct 31 2003 - 16:14:52 CST)
  • Dave Pugmire (Fri Oct 31 2003 - 14:00:56 CST)
  • John Stone (Thu Oct 30 2003 - 15:22:14 CST)
  • Cesar Delgado (Thu Oct 30 2003 - 15:17:22 CST)
  • Brian Bennion (Thu Oct 30 2003 - 14:46:37 CST)
  • John Stone (Thu Oct 30 2003 - 13:51:51 CST)
  • Cesar Delgado (Thu Oct 30 2003 - 13:37:15 CST)
  • John Stone (Thu Oct 30 2003 - 13:28:30 CST)
  • Cesar Delgado (Thu Oct 30 2003 - 12:03:45 CST)
  • John Stone (Thu Oct 23 2003 - 02:32:50 CDT)
  • Cesar Delgado (Wed Oct 22 2003 - 18:13:57 CDT)
• vmd and color
  • Sergei Izrailev (Fri Apr 23 1999 - 10:50:40 CDT)
  • Robert Milius (Thu Apr 22 1999 - 15:56:17 CDT)
• VMD and CPMD
  • Eduard Schreiner (Wed Jan 26 2005 - 08:56:00 CST)
  • rschurhammer_at_chimie.u-strasbg.fr (Wed Jan 26 2005 - 04:47:23 CST)
• VMD and cuda 7.5
  • John Stone (Fri Mar 17 2017 - 15:38:08 CDT)
  • Hamid (Sat Mar 11 2017 - 04:33:51 CST)
• VMD and Cyclotides...
  • Luis Rosales (Tue Apr 05 2005 - 17:01:21 CDT)
  • Luis Gracia (Tue Apr 05 2005 - 12:56:59 CDT)
  • John Stone (Tue Apr 05 2005 - 12:54:48 CDT)
  • Andrew Dalke (Tue Apr 05 2005 - 02:59:29 CDT)
  • Luis Rosales (Tue Apr 05 2005 - 02:47:11 CDT)
  • Luis Gracia (Mon Apr 04 2005 - 22:08:24 CDT)
  • Luis Rosales (Mon Apr 04 2005 - 20:05:33 CDT)
• VMD and doubleprecision trajectories
  • John Stone (Tue Jul 15 2003 - 09:48:44 CDT)
  • Luca Mollica (Tue Jul 15 2003 - 07:30:44 CDT)
• VMD and FreeVR
  • John Stone (Thu Sep 18 2014 - 16:42:17 CDT)
  • Michael Krause (Fri Sep 12 2014 - 02:40:13 CDT)
  • John Stone (Fri Aug 29 2014 - 17:18:36 CDT)
  • Michael Krause (Fri Aug 29 2014 - 08:43:46 CDT)
• VMD and GRASP Qu.II
  • Lothar Esser (Thu Jun 15 2000 - 10:33:42 CDT)
  • Scott W. Sides (Thu Jun 15 2000 - 10:14:14 CDT)
  • Paul Hubbard (Thu Jun 15 2000 - 10:08:22 CDT)
  • Lothar Esser (Thu Jun 15 2000 - 09:09:52 CDT)
  • Andrew Dalke (Thu Jun 15 2000 - 04:23:39 CDT)
  • Paul Hubbard (Wed Jun 14 2000 - 15:16:23 CDT)
• vmd and hull
  • syma khalid (Thu Jan 27 2005 - 11:27:03 CST)
  • John Stone (Thu Jan 27 2005 - 11:16:40 CST)
  • syma khalid (Thu Jan 27 2005 - 06:36:09 CST)
• VMD and IED for Tiger?
  • John Stone (Tue Aug 22 2006 - 20:17:45 CDT)
  • ybomble (Tue Aug 22 2006 - 19:54:17 CDT)
• VMD and IED on Windows XP
  • John Stone (Fri Feb 06 2009 - 12:36:04 CST)
  • Roland Schmucki (Thu Feb 05 2009 - 20:57:34 CST)
• VMD and Intel X3100 GPU
  • Mohd Farid Ismail (Sat Oct 24 2009 - 21:18:49 CDT)
  • Mohd Farid Ismail (Sat Oct 24 2009 - 16:27:38 CDT)
  • Axel Kohlmeyer (Sat Oct 24 2009 - 17:28:33 CDT)
• VMD and Interactive Essential Dynamics (IED)
  • Justin Gullingsrud (Tue Mar 22 2005 - 11:40:52 CST)
  • Shatadal Ghosh (Tue Mar 22 2005 - 00:22:05 CST)
• vmd and k3b
  • John Stone (Mon Mar 28 2005 - 11:50:07 CST)
  • Paul D. Jones (Mon Mar 28 2005 - 11:11:34 CST)
• VMD and Kinect
  • Dudo (Wed Mar 09 2011 - 12:27:40 CST)
  • John Stone (Wed Mar 09 2011 - 10:58:04 CST)
  • Olaf Lenz (Wed Mar 09 2011 - 05:30:16 CST)
• vmd and Konqueror web browser under Suse 9?
  • John Stone (Mon May 31 2004 - 12:28:35 CDT)
  • Gustavo Mercier (Mon May 31 2004 - 08:20:28 CDT)
• VMD and latest XQuartz update
  • Bennion, Brian (Tue Apr 11 2017 - 09:56:53 CDT)
  • John Stone (Tue Apr 11 2017 - 03:00:45 CDT)
  • Thomas Griffiths (Tue Apr 11 2017 - 02:07:46 CDT)
  • Thomas Griffiths (Mon Apr 10 2017 - 01:03:46 CDT)
  • Ryan P Steele (Mon Mar 20 2017 - 23:20:27 CDT)
  • John Stone (Fri Mar 17 2017 - 14:25:31 CDT)
  • Ryan P. Steele (Thu Mar 16 2017 - 15:28:19 CDT)
  • John Stone (Thu Mar 16 2017 - 14:56:10 CDT)
  • Ryan P. Steele (Thu Mar 16 2017 - 14:50:53 CDT)
• VMD and Mandrake Linux 9.1
  • Teletchéa Stéphane (Fri Nov 07 2003 - 06:08:23 CST)
  • John Stone (Thu Nov 06 2003 - 15:34:46 CST)
  • Alexandre Vakhrouchev (Thu Nov 06 2003 - 02:59:04 CST)
• VMD and MDFF: ssrestraints package error message under Windows
  • Nicolas Coudray (Mon Jul 18 2011 - 14:46:13 CDT)
  • Leonardo Trabuco (Fri Jul 08 2011 - 03:07:06 CDT)
  • Nicolas Coudray (Wed Jul 06 2011 - 13:55:21 CDT)
• VMD and Monte Carlo
  • Gianluca Interlandi (Mon Jan 31 2011 - 14:13:24 CST)
• vmd and msms for mac
  • John Stone (Mon Dec 22 2003 - 11:29:25 CST)
  • Jerry Ebalunode (Mon Dec 22 2003 - 09:15:05 CST)
• VMD and NAMD survey invitations coming to your inbox...
  • John Stone (Tue May 18 2021 - 14:21:55 CDT)
• VMD and named pipes
  • Bogdan Costescu (Sat Sep 04 2010 - 05:26:52 CDT)
  • Thomas C. Bishop (Fri Sep 03 2010 - 13:18:17 CDT)
  • Bogdan Costescu (Thu Sep 02 2010 - 23:51:23 CDT)
  • Thomas C. Bishop (Thu Sep 02 2010 - 14:28:55 CDT)
• VMD and NetCDF under Windows Vista 32bit
  • John Stone (Mon Sep 14 2009 - 14:10:54 CDT)
  • Jan F. Totz (Sun Sep 13 2009 - 01:57:02 CDT)
• vmd and proxy settings
  • John Stone (Tue Mar 01 2016 - 10:22:15 CST)
  • Greipel.Joachim_at_mh-hannover.de (Tue Mar 01 2016 - 05:59:03 CST)
• VMD and R
  • Thomas Bishop (Mon Nov 21 2011 - 14:42:44 CST)
• VMD and Remote X-Servers
  • John Stone (Tue Dec 28 2004 - 10:56:26 CST)
  • Greipel.Joachim_at_MH-Hannover.DE (Tue Dec 28 2004 - 08:39:32 CST)
• VMD and rendering packages
  • John Stone (Wed Aug 14 2002 - 11:30:51 CDT)
  • Marc Baaden (Wed Aug 14 2002 - 11:01:13 CDT)
• VMD and Situs
  • John Stone (Thu Jun 05 2003 - 09:10:21 CDT)
  • Suzanne Brewerton (Thu Jun 05 2003 - 04:53:33 CDT)
• VMD and Spacenavigator in OSX
  • Madaras Erzsébet (Tue Dec 06 2016 - 04:12:40 CST)
  • John Stone (Mon Nov 28 2016 - 01:42:14 CST)
  • Fernando Vallejos-Burgos (Sun Nov 13 2016 - 18:45:27 CST)
• VMD and Trackers
  • John Stone (Tue Jul 16 2002 - 15:04:35 CDT)
  • John Stone (Tue Jul 16 2002 - 14:39:12 CDT)
  • Brendan O'Malley (Sun Jul 14 2002 - 19:22:45 CDT)
• VMD and VRPN (7.33) connection - LINUX
  • TUBIANA Thibault CNRS (Mon Jun 29 2015 - 10:09:52 CDT)
• VMD and windows
  • John Stone (Mon Jan 10 2005 - 18:02:41 CST)
  • Florian Haberl (Mon Jan 10 2005 - 01:37:40 CST)
• VMD and X forwarding to MacOS 10.5.7
  • John Stone (Wed Jul 15 2009 - 13:48:13 CDT)
  • Benjamin Bouvier (Fri Jun 12 2009 - 11:33:47 CDT)
  • John Stone (Fri Jun 12 2009 - 11:17:22 CDT)
  • Benjamin Bouvier (Fri Jun 12 2009 - 10:45:37 CDT)
  • Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
  • John Stone (Fri Jun 12 2009 - 10:36:49 CDT)
  • John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
  • Benjamin Bouvier (Fri Jun 12 2009 - 09:48:29 CDT)
• vmd and xmgrace
  • John Stone (Mon Dec 19 2005 - 17:24:32 CST)
  • John Stone (Mon Dec 19 2005 - 17:13:10 CST)
  • Vlad Cojocaru (Fri Dec 16 2005 - 09:24:58 CST)
• VMD and XP
  • John Stone (Thu Oct 23 2003 - 09:47:29 CDT)
  • John Stone (Wed Oct 22 2003 - 17:35:10 CDT)
  • Jorge Pikunic (Wed Oct 22 2003 - 14:40:23 CDT)
• vmd and yosemite
  • John Stone (Fri Dec 12 2014 - 15:48:57 CST)
  • gergely.gyimesi_at_ibmm.unibe.ch (Wed Dec 10 2014 - 03:18:22 CST)
  • gergely.gyimesi_at_ibmm.unibe.ch (Wed Dec 10 2014 - 02:38:55 CST)
• VMD animating spindensity
  • Negar Ashari Astani (Tue Feb 07 2017 - 04:28:31 CST)
• VMD Animation example doesn't work...
  • John Stone (Tue Jan 13 2009 - 16:35:01 CST)
  • Alberto Sergio Garay (Fri Dec 19 2008 - 06:52:05 CST)
  • Alberto Sergio Garay (Tue Dec 16 2008 - 04:43:23 CST)
• VMD APBS Plugin Issues
  • Kevin Lin (Sun Oct 15 2023 - 19:15:01 CDT)
• VMD as a python module
  • Ondrej Marsalek (Mon May 18 2009 - 11:30:55 CDT)
  • Axel Kohlmeyer (Mon May 18 2009 - 09:27:16 CDT)
  • Ondrej Marsalek (Mon May 18 2009 - 04:45:39 CDT)
• VMD as background job on multiprocessor machine doesn't work?
  • John Stone (Thu Jul 06 2006 - 13:00:57 CDT)
  • Jan Saam (Wed Jul 05 2006 - 19:46:13 CDT)
• VMD as command line interface
  • Brian Bennion (Thu Mar 11 2004 - 10:24:31 CST)
  • John Stone (Thu Mar 11 2004 - 09:59:51 CST)
  • Justin Gullingsrud (Thu Mar 11 2004 - 09:25:32 CST)
  • Vlad Cojocaru (Thu Mar 11 2004 - 07:33:52 CST)
• VMD at Siggraph next week...
  • John Stone (Thu Jul 24 2003 - 14:18:17 CDT)
• vmd ATI card
  • John Stone (Fri May 25 2012 - 13:05:20 CDT)
• VMD atom NUMER problem
  • John Stone (Wed Jun 29 2011 - 17:25:42 CDT)
  • snoze pa (Wed Jun 29 2011 - 15:24:44 CDT)
  • John Stone (Wed Jun 29 2011 - 15:21:41 CDT)
  • snoze pa (Wed Jun 29 2011 - 15:07:27 CDT)
• VMD atomselect
  • J. Rui Rodrigues (Thu Apr 02 2009 - 07:19:40 CDT)
  • Steve Massard (Thu Apr 02 2009 - 05:57:37 CDT)
• VMD autopsfgen and Mg2+
  • Peter Freddolino (Tue Nov 10 2009 - 23:24:02 CST)
  • Luis Agullo (LAB) (Mon Nov 09 2009 - 02:46:52 CST)
  • Peter Freddolino (Fri Nov 06 2009 - 19:23:54 CST)
  • John Stone (Fri Nov 06 2009 - 09:55:29 CST)
  • Luis Agullo (LAB) (Fri Nov 06 2009 - 03:58:19 CST)
  • Peter Freddolino (Thu Nov 05 2009 - 20:02:41 CST)
  • Peter Freddolino (Thu Nov 05 2009 - 09:03:44 CST)
  • Luis Agullo (LAB) (Thu Nov 05 2009 - 02:18:43 CST)
  • sarah k (Wed Nov 04 2009 - 23:47:20 CST)
  • John Stone (Wed Nov 04 2009 - 09:49:17 CST)
  • Luis Agullo (LAB) (Tue Nov 03 2009 - 04:17:59 CST)
• VMD beta3 windows installer
  • John Stone (Wed Mar 09 2011 - 10:43:23 CST)
  • Ajasja LjubetiÄ� (Wed Mar 09 2011 - 08:21:46 CST)
• VMD BFEE namdbin error
  • Gumbart, JC (Wed May 24 2023 - 11:09:20 CDT)
  • Janni Christensen (Tue May 09 2023 - 02:03:44 CDT)
• VMD Bug ?
  • John Stone (Mon Apr 19 2004 - 09:38:36 CDT)
• vmd bug in ubuntu 9.10
  • Olaf Lenz (Thu Nov 12 2009 - 02:28:14 CST)
  • Olaf Lenz (Thu Nov 12 2009 - 02:06:03 CST)
  • Ale Gomez (Wed Nov 11 2009 - 17:56:44 CST)
  • John Stone (Wed Nov 11 2009 - 11:15:09 CST)
  • ChoiHeeSung (Wed Nov 11 2009 - 10:53:04 CST)
• vmd calculating wrong number of frames in xtc file using molinfo numframes ?
  • maria goranovic (Tue May 24 2011 - 04:45:55 CDT)
  • Axel Kohlmeyer (Mon May 23 2011 - 11:11:52 CDT)
  • maria goranovic (Mon May 23 2011 - 10:13:08 CDT)
• VMD called from python hangs on Windows
  • Pawel Kedzierski (Wed Jul 13 2016 - 03:46:22 CDT)
  • John Stone (Wed Jul 13 2016 - 01:35:55 CDT)
  • Pawel Kedzierski (Mon Jul 11 2016 - 15:35:40 CDT)
• VMD camera feature request: zoom and tilt
  • Charles McAnany (Wed Jul 29 2015 - 12:04:59 CDT)
  • John Stone (Tue Jul 28 2015 - 12:53:43 CDT)
  • Charles McAnany (Mon Jul 27 2015 - 11:59:29 CDT)
• VMD can't display new PDB secondary structure properly ( pyMol, jMol can). .
  • Boris Steipe (Tue Nov 20 2012 - 14:44:53 CST)
  • Boris Steipe (Tue Nov 20 2012 - 11:20:04 CST)
  • John Stone (Mon Nov 19 2012 - 21:02:20 CST)
  • Martin, Erik W (Mon Nov 19 2012 - 20:37:26 CST)
  • Martin, Erik W (Mon Nov 19 2012 - 20:03:29 CST)
• VMD can't display new PDB secondary structure properly (pyMol, jMol can)
  • Larry Guy (Mon Nov 19 2012 - 18:52:52 CST)
  • Mayne, Christopher G (Mon Nov 19 2012 - 18:46:09 CST)
  • John Stone (Mon Nov 19 2012 - 18:18:10 CST)
  • Bennion, Brian (Mon Nov 19 2012 - 17:30:19 CST)
  • Larry Guy (Mon Nov 19 2012 - 16:00:29 CST)
• vmd can't display Pt-Cl bond
  • Ajasja LjubetiÄ� (Mon Sep 20 2010 - 03:12:18 CDT)
  • 程昌利 (Mon Sep 20 2010 - 02:06:38 CDT)
• VMD can't read 1OXY
  • John Stone (Mon Feb 17 2014 - 10:40:21 CST)
  • Boris Steipe (Tue Feb 11 2014 - 16:15:13 CST)
  • Bennion, Brian (Tue Feb 11 2014 - 12:31:35 CST)
  • Bennion, Brian (Tue Feb 11 2014 - 12:17:16 CST)
  • Ivan Gregoretti (Tue Feb 11 2014 - 12:01:59 CST)
  • Bennion, Brian (Tue Feb 11 2014 - 11:03:32 CST)
  • Josh Vermaas (Tue Feb 11 2014 - 09:42:22 CST)
  • Boris Steipe (Tue Feb 11 2014 - 09:51:10 CST)
  • Maxim Belkin (Tue Feb 11 2014 - 09:31:47 CST)
  • Axel Kohlmeyer (Mon Feb 10 2014 - 22:20:25 CST)
  • Boris Steipe (Mon Feb 10 2014 - 21:16:55 CST)
• vmd can't start up after being installed in linux
  • John Stone (Wed Apr 18 2007 - 16:14:32 CDT)
  • Cesar Luis Avila (Wed Apr 18 2007 - 13:23:21 CDT)
  • John Stone (Wed Apr 18 2007 - 11:03:04 CDT)
  • Cesar Luis Avila (Wed Apr 18 2007 - 10:54:40 CDT)
  • Axel Kohlmeyer (Tue Apr 17 2007 - 22:01:27 CDT)
  • John Stone (Tue Apr 17 2007 - 22:50:39 CDT)
  • lanhua (Tue Apr 17 2007 - 23:22:13 CDT)
• vmd cannot be launched after successful installation
  • Stefano Meliga (Wed Jun 10 2009 - 10:58:15 CDT)
  • John Stone (Wed Jun 10 2009 - 11:02:58 CDT)
• vmd cannot display cartoon/ribbon representations of part of a protein in gro/trr format
  • 孙业平 (Sun Feb 05 2017 - 08:11:19 CST)
• VMD cannot display electron density map
  • Tristan Croll (Tue Aug 25 2015 - 03:53:07 CDT)
  • 孙业平 (Sun Aug 23 2015 - 13:11:01 CDT)
• vmd cannot display part of the protein in gromacs gro/trr file format
  • John Stone (Mon Feb 13 2017 - 14:25:15 CST)
  • sunyeping (Sat Feb 11 2017 - 07:23:39 CST)
  • John Stone (Wed Feb 08 2017 - 15:38:45 CST)
  • sunyeping (Sun Feb 05 2017 - 08:16:49 CST)
  • John Stone (Fri Feb 03 2017 - 10:31:45 CST)
  • sunyeping (Fri Feb 03 2017 - 02:44:20 CST)
• vmd cause linux system freezes randomly
  • John Stone (Mon Nov 19 2012 - 17:44:27 CST)
  • John Stone (Sun Nov 18 2012 - 22:21:22 CST)
  • Kasra Fattah (Fri Nov 16 2012 - 17:03:26 CST)
  • John Stone (Wed Nov 14 2012 - 22:20:11 CST)
  • Kasra Fattah (Mon Nov 12 2012 - 18:44:02 CST)
  • John Stone (Fri Nov 09 2012 - 13:32:35 CST)
  • Kasra Fattah (Fri Nov 09 2012 - 11:07:12 CST)
  • Axel Kohlmeyer (Thu Nov 08 2012 - 00:15:21 CST)
  • Kasra Fattah (Wed Nov 07 2012 - 23:03:50 CST)
  • Kasra Fattah (Wed Nov 07 2012 - 19:18:01 CST)
• VMD causing xorg crash
  • John Stone (Fri Apr 01 2005 - 16:23:11 CST)
  • Jernej Zidar (Fri Apr 01 2005 - 16:04:12 CST)
• vmd change atom type when saving lammpstrj
  • Yann Claveau (Thu Jul 15 2021 - 03:27:18 CDT)
  • Axel Kohlmeyer (Tue Jul 13 2021 - 15:31:04 CDT)
  • Yann Claveau (Tue Jul 13 2021 - 08:19:38 CDT)
• VMD charmm paramters files: par_all36m_prot.prm
  • René Hafner TUK (Wed May 27 2020 - 01:34:51 CDT)
  • Gumbart, JC (Tue May 26 2020 - 13:29:05 CDT)
  • René Hafner TUK (Tue May 26 2020 - 06:48:44 CDT)
• vmd checking socket in tcl
  • John Stone (Mon Oct 28 2002 - 19:46:12 CST)
  • jen ramus (Mon Oct 28 2002 - 19:30:04 CST)
• VMD closes upon loading a gromacs xtc file
  • John Stone (Fri Nov 22 2013 - 23:54:10 CST)
  • jayant james (Wed Nov 13 2013 - 20:55:46 CST)
• VMD clustering of conformations
  • Jeff Saxon (Sat Nov 07 2020 - 07:18:23 CST)
  • Roshan Shrestha (Sat Nov 07 2020 - 05:37:31 CST)
  • Jeff Saxon (Sat Nov 07 2020 - 04:57:59 CST)
• Vmd coefficient tool
  • Suresh Ghimire (Thu Jan 25 2018 - 03:39:56 CST)
• VMD color by user
  • Zhencheng Ren (Fri Apr 04 2014 - 14:24:53 CDT)
• VMD Command
  • dimka (Tue Mar 21 2006 - 01:20:06 CST)
  • John Stone (Tue Mar 21 2006 - 01:17:36 CST)
  • Pijush Ghosh (Tue Mar 21 2006 - 00:00:42 CST)
• vmd command delay
  • Oliver Beckstein (Wed Nov 21 2007 - 20:27:41 CST)
  • John Stone (Wed Nov 21 2007 - 13:26:48 CST)
  • jiwu liu (Tue Nov 06 2007 - 20:02:27 CST)
  • John Stone (Mon Nov 05 2007 - 17:31:24 CST)
  • jiwu liu (Mon Nov 05 2007 - 16:55:50 CST)
• VMD command line Windows98
  • John Stone (Sun Jun 18 2000 - 10:59:25 CDT)
  • Heiko Carstens (Thu Jun 15 2000 - 03:28:38 CDT)
• vmd command not found
  • Josh Vermaas (Fri Feb 13 2015 - 08:10:20 CST)
  • Seera Suryanarayana (Fri Feb 13 2015 - 03:56:16 CST)
• VMD compatibility with graphics card
  • John Stone (Thu Dec 02 2004 - 09:55:55 CST)
  • Eric Hajjar (Thu Dec 02 2004 - 03:27:08 CST)
• VMD Compatible with Windows with 64-bit OS?
  • ccbroomell_at_gmail.com (Thu Apr 09 2020 - 16:43:29 CDT)
  • Josh Vermaas (Thu Apr 09 2020 - 16:23:38 CDT)
  • John Stone (Thu Apr 09 2020 - 16:21:37 CDT)
  • Alex Hummels (Thu Apr 09 2020 - 15:44:24 CDT)
• VMD compilation 64 bits
  • Ivan Moncayo (Wed Jul 25 2012 - 16:22:47 CDT)
  • John Stone (Wed Jul 25 2012 - 15:09:03 CDT)
  • Ivan Moncayo (Wed Jul 25 2012 - 12:03:49 CDT)
• VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction"
  • Giacomo Fiorin (Fri Mar 05 2021 - 11:46:59 CST)
  • René Hafner TUK (Thu Mar 04 2021 - 14:21:27 CST)
• VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now
  • John Stone (Sat Mar 06 2021 - 16:30:09 CST)
  • René Hafner TUK (Sat Mar 06 2021 - 16:20:35 CST)
  • John Stone (Sat Mar 06 2021 - 15:26:51 CST)
  • René Hafner TUK (Sat Mar 06 2021 - 15:21:00 CST)
  • John Stone (Sat Mar 06 2021 - 12:37:13 CST)
  • René Hafner TUK (Sat Mar 06 2021 - 10:14:12 CST)
• VMD compile on windows (where is windows.h?)
  • Marcos Ackel (Wed Oct 03 2012 - 13:48:45 CDT)
  • John Stone (Tue Oct 02 2012 - 16:59:47 CDT)
  • Marcos Ackel (Tue Oct 02 2012 - 16:38:18 CDT)
  • John Stone (Tue Oct 02 2012 - 15:33:52 CDT)
  • Marcos Ackel (Tue Oct 02 2012 - 15:17:48 CDT)
• VMD Composite Extension/swrast Error on Centos 6.6
  • John Stone (Fri Aug 07 2015 - 21:02:56 CDT)
  • Joseph Baker (Mon Aug 03 2015 - 16:31:41 CDT)
• vmd console linux shell mode
  • John Stone (Wed May 13 2020 - 21:46:33 CDT)
  • Michael Morgan (Wed May 13 2020 - 20:52:04 CDT)
• vmd console problem
  • Peter Freddolino (Sat Feb 06 2016 - 19:40:22 CST)
  • Peter Freddolino (Sat Feb 06 2016 - 19:38:22 CST)
  • Reza Shakouri (Sat Feb 06 2016 - 05:29:06 CST)
  • Josh Vermaas (Fri Feb 05 2016 - 15:08:26 CST)
  • Reza Shakouri (Fri Feb 05 2016 - 14:31:04 CST)
• Vmd console window colors in Irix 6.5
  • John Stone (Thu Oct 24 2002 - 14:31:47 CDT)
  • Ken Sale (Thu Oct 24 2002 - 13:47:03 CDT)
• VMD contact map - long helical structure
  • Zyla Dawid (Mon Oct 16 2017 - 03:41:44 CDT)
• VMD Contact map through time
  • Barry Isralewitz (Wed Feb 08 2012 - 16:47:22 CST)
  • Zack Scholl (Wed Feb 08 2012 - 16:09:04 CST)
• vmd core dump on IRIX
  • Rene Salmon (Tue Mar 06 2007 - 10:18:18 CST)
  • John Stone (Mon Mar 05 2007 - 16:30:10 CST)
  • Rene Salmon (Mon Mar 05 2007 - 16:16:01 CST)
• VMD crasch
  • John Stone (Thu Jul 31 2008 - 17:00:22 CDT)
  • Lixia Jin Day (Thu Jul 31 2008 - 15:58:28 CDT)
  • Eric H. Lee (Thu Jul 31 2008 - 16:11:33 CDT)
• VMD Crash
  • Czarny,Ryan (Fri Apr 03 2020 - 12:42:08 CDT)
  • Axel Kohlmeyer (Thu May 28 2009 - 19:46:33 CDT)
  • John Stone (Thu May 28 2009 - 19:32:44 CDT)
  • Axel Kohlmeyer (Thu May 28 2009 - 19:05:48 CDT)
  • John Stone (Thu May 28 2009 - 15:13:22 CDT)
  • snoze pa (Thu May 28 2009 - 14:45:10 CDT)
• vmd crash at start
  • Bogdan Tarus (Thu Jun 17 2010 - 12:16:06 CDT)
  • John Stone (Thu Jun 17 2010 - 10:41:34 CDT)
  • Bogdan Tarus (Thu Jun 17 2010 - 10:33:35 CDT)
• VMD crash due to large volume of .dcd file
  • Aravinda Munasinghe (Sun Nov 29 2020 - 08:56:43 CST)
  • Emma Wu (Sat Nov 28 2020 - 16:53:30 CST)
  • Mi Yang (Sat Nov 28 2020 - 13:49:16 CST)
• VMD crash on athlon64 with licorice representation
  • John Stone (Fri May 13 2005 - 01:48:45 CDT)
  • Warren DeLano (Thu May 12 2005 - 19:27:17 CDT)
  • Sabuj Pattanayek (Thu May 12 2005 - 18:08:43 CDT)
  • John Stone (Thu May 12 2005 - 13:47:55 CDT)
  • Sabuj Pattanayek (Thu May 12 2005 - 13:21:48 CDT)
  • Karsten Suhre (Thu May 12 2005 - 12:07:29 CDT)
  • Sabuj Pattanayek (Wed May 11 2005 - 18:18:06 CDT)
  • Carlos Simmerling (Wed May 11 2005 - 10:34:22 CDT)
  • John Stone (Wed May 11 2005 - 10:28:18 CDT)
  • Carlos Simmerling (Wed May 11 2005 - 08:13:25 CDT)
• VMD crash on large DCD files.
  • John Stone (Thu Jan 30 2014 - 10:25:06 CST)
  • Ajasja LjubetiÄ� (Thu Jan 30 2014 - 03:34:27 CST)
  • Josh Vermaas (Wed Jan 29 2014 - 14:50:06 CST)
  • Villalain Boullon, Jose (Wed Jan 29 2014 - 12:46:18 CST)
• VMD crash on PDB read
  • John Stone (Mon May 02 2005 - 09:54:50 CDT)
  • Stefano Piana (Mon May 02 2005 - 04:38:25 CDT)
• VMD crash when opening
  • sunyeping (Tue Sep 29 2015 - 11:39:27 CDT)
  • sunyeping (Tue Sep 29 2015 - 11:22:46 CDT)
• VMD Crash with Ubuntu 12.04 LTS and NVidia 310.44 driver.
  • Aric Newton (Thu May 02 2013 - 06:17:49 CDT)
• VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed
  • Brett Pemberton (Tue Jun 27 2006 - 22:37:59 CDT)
  • Axel Kohlmeyer (Tue Jun 27 2006 - 22:17:01 CDT)
  • Brett Pemberton (Tue Jun 27 2006 - 20:59:56 CDT)
  • Axel Kohlmeyer (Tue Jun 27 2006 - 19:53:00 CDT)
  • Brett Pemberton (Tue Jun 27 2006 - 18:57:15 CDT)
  • John Stone (Tue Jun 27 2006 - 17:15:03 CDT)
  • Brett Pemberton (Tue Jun 27 2006 - 00:52:41 CDT)
  • John Stone (Mon Jun 19 2006 - 14:43:06 CDT)
  • Jinhua Zhang (Mon Jun 19 2006 - 13:28:18 CDT)
• VMD crashed during reading the trajectory file
  • Pawel Kedzierski (Sat Jun 10 2017 - 05:33:58 CDT)
  • Ashar Malik (Sat Jun 10 2017 - 02:15:30 CDT)
  • Sidra Rafi (Sat Jun 10 2017 - 00:34:34 CDT)
• vmd crashes
  • John Stone (Tue Mar 10 2009 - 21:58:40 CDT)
  • bo baker (Mon Mar 09 2009 - 19:09:59 CDT)
  • John Stone (Mon Mar 09 2009 - 09:36:56 CDT)
  • bo baker (Mon Mar 09 2009 - 04:49:42 CDT)
• vmd crashes after startup...
  • Benjamin Goldsteen (Wed Dec 03 2003 - 22:46:17 CST)
  • John Stone (Wed Dec 03 2003 - 18:44:26 CST)
  • Luis Guillermo Cota Preciado (Wed Dec 03 2003 - 15:51:57 CST)
• vmd crashes during gromacs trr loading
  • Roberto Gaspari (Thu Nov 08 2012 - 05:11:19 CST)
  • Bogdan Costescu (Wed Nov 07 2012 - 04:51:37 CST)
  • Axel Kohlmeyer (Wed Nov 07 2012 - 03:14:28 CST)
  • Roberto Gaspari (Wed Nov 07 2012 - 02:05:11 CST)
• VMD crashes during the execution of a computational intensive TCL script
  • John Stone (Mon Aug 20 2007 - 16:41:17 CDT)
  • Èùìáò Åõáããåëéäçò (Mon Aug 20 2007 - 16:25:33 CDT)
• VMD crashes in VolumeSlice representation
  • John Stone (Mon May 25 2009 - 23:20:24 CDT)
  • Axel Kohlmeyer (Sun May 24 2009 - 13:49:41 CDT)
  • Suman Chakrabarty (Sun May 24 2009 - 13:09:10 CDT)
• VMD crashes KDE at startup
  • denilson_at_dqi.ufla.br (Fri Apr 19 2013 - 14:17:48 CDT)
  • denilson_at_dqi.ufla.br (Fri Apr 19 2013 - 11:48:56 CDT)
  • John Stone (Fri Apr 19 2013 - 10:57:29 CDT)
  • denilson_at_dqi.ufla.br (Fri Apr 19 2013 - 09:27:08 CDT)
  • Felix Rausch (Fri Apr 19 2013 - 06:41:40 CDT)
• VMD crashes on displaying NewRibbons or New Cartoon
  • Thomas C. Bishop (Thu Nov 13 2008 - 08:20:50 CST)
  • John Stone (Thu Nov 13 2008 - 08:26:20 CST)
  • Jufang Shan (Wed Nov 12 2008 - 20:48:17 CST)
  • John Stone (Wed Nov 12 2008 - 09:35:13 CST)
  • Jufang Shan (Fri Oct 31 2008 - 10:13:32 CDT)
• VMD crashes on Macbook with Intel Graphics
  • John Stone (Fri Feb 23 2018 - 10:07:37 CST)
  • theblueone_at_web.de (Fri Feb 23 2018 - 07:23:58 CST)
  • John Stone (Thu Feb 22 2018 - 17:16:23 CST)
  • theblueone_at_web.de (Wed Feb 21 2018 - 02:27:47 CST)
• VMD crashes on opening large cube files
  • John Stone (Tue May 28 2013 - 09:36:26 CDT)
  • VandeVondele Joost (Sat May 25 2013 - 11:38:14 CDT)
• vmd crashes on startup
  • Arnab Mukherjee (Fri Jul 06 2007 - 15:24:42 CDT)
  • Axel Kohlmeyer (Fri Jul 06 2007 - 12:51:55 CDT)
  • Axel Kohlmeyer (Wed Jul 04 2007 - 15:55:33 CDT)
  • Arnab Mukherjee (Wed Jul 04 2007 - 16:11:36 CDT)
  • John Stone (Fri Oct 21 2005 - 09:59:05 CDT)
  • Dr Gavin Seddon (Thu Oct 20 2005 - 13:45:29 CDT)
  • John Stone (Thu Oct 20 2005 - 13:43:01 CDT)
  • John Stone (Thu Oct 20 2005 - 13:37:24 CDT)
  • Dr Gavin Seddon (Thu Oct 20 2005 - 13:29:47 CDT)
  • Dr Gavin Seddon (Thu Oct 20 2005 - 13:24:45 CDT)
  • John Stone (Thu Oct 20 2005 - 12:56:38 CDT)
  • Dr Gavin Seddon (Thu Oct 20 2005 - 04:13:46 CDT)
  • John Stone (Wed Oct 19 2005 - 09:35:08 CDT)
  • Dr Gavin Seddon (Wed Oct 19 2005 - 07:40:54 CDT)
• VMD Crashes on Windows Vista when trying to load more than 5000 steps
  • Josiah Zayner (Mon Jul 19 2010 - 09:37:51 CDT)
  • John Stone (Mon Jul 19 2010 - 09:55:03 CDT)
• vmd crashes upon load of pdb
  • Praedor Atrebates (Fri Sep 23 2005 - 16:14:28 CDT)
  • John Stone (Fri Sep 23 2005 - 16:09:11 CDT)
  • Praedor Atrebates (Fri Sep 23 2005 - 15:48:52 CDT)
  • John Stone (Fri Sep 23 2005 - 15:45:32 CDT)
  • Praedor Atrebates (Fri Sep 23 2005 - 15:24:51 CDT)
  • Praedor Atrebates (Fri Sep 23 2005 - 15:20:19 CDT)
  • John Stone (Fri Sep 23 2005 - 15:08:09 CDT)
  • Praedor Atrebates (Fri Sep 23 2005 - 15:03:03 CDT)
  • John Stone (Fri Sep 23 2005 - 14:36:55 CDT)
  • Praedor Atrebates (Fri Sep 23 2005 - 14:30:03 CDT)
  • John Stone (Fri Sep 23 2005 - 13:44:07 CDT)
  • Praedor Atrebates (Fri Sep 23 2005 - 13:30:56 CDT)
• VMD crashes when drag-and-dropping files in Windows
  • Oleg Stroganov (Tue Nov 13 2018 - 04:16:09 CST)
• VMD crashes when files are drag-and-dropped - any resolution?
  • Oleg Stroganov (Wed Jun 03 2020 - 22:14:54 CDT)
• VMD crashes with FX440 and RH Entreprise 4.0
  • John Stone (Tue Sep 06 2005 - 13:13:31 CDT)
  • Dow Hurst DPHURST (Tue Sep 06 2005 - 13:10:51 CDT)
  • John Stone (Tue Sep 06 2005 - 11:13:08 CDT)
  • John Stone (Tue Sep 06 2005 - 09:56:05 CDT)
  • Joseph Fernandez (Tue Sep 06 2005 - 09:52:07 CDT)
• VMD crashes with malloc error
  • Fahimeh Baftizadeh (Wed Feb 27 2013 - 10:19:02 CST)
  • John Stone (Tue Feb 26 2013 - 13:12:52 CST)
  • Fahimeh Baftizadeh (Tue Feb 26 2013 - 12:42:59 CST)
• VMD crashes.
  • John Stone (Fri Oct 28 2011 - 10:44:02 CDT)
  • Diego Javier Alonso de Armiño (Fri Oct 28 2011 - 10:22:19 CDT)
• VMD crashing on OS X El Capitan 64 bit
  • John Stone (Wed Dec 14 2016 - 16:44:00 CST)
  • K. Aurelia Ball (Wed Dec 14 2016 - 15:27:35 CST)
• VMD crashing when loading prmtop files
  • alex lin (Wed Dec 17 2014 - 17:31:31 CST)
  • John Stone (Wed Dec 17 2014 - 10:14:35 CST)
  • Hannes Loeffler (Wed Dec 17 2014 - 09:46:39 CST)
  • John Stone (Wed Dec 17 2014 - 08:49:19 CST)
  • Hannes Loeffler (Wed Dec 17 2014 - 04:30:27 CST)
  • alex lin (Tue Dec 16 2014 - 17:37:58 CST)
• VMD cuda
  • John Stone (Tue Jul 13 2010 - 14:50:08 CDT)
  • Axel Kohlmeyer (Mon Jul 12 2010 - 16:50:26 CDT)
  • John Stone (Mon Jul 12 2010 - 16:48:39 CDT)
  • Raul Araya (Mon Jul 12 2010 - 15:59:19 CDT)
• vmd customization
  • Axel Kohlmeyer (Thu Oct 28 2004 - 07:30:57 CDT)
  • angelo vargas (Thu Oct 28 2004 - 03:57:25 CDT)
• VMD CVS and build procedure changes...
  • John Stone (Tue Feb 19 2002 - 18:15:06 CST)
• vmd cvs compilation with CUDA fails
  • John Stone (Tue Mar 31 2009 - 14:26:31 CDT)
• VMD CVS Request for Richard Cook
  • Rich Cook (Fri Jan 22 2010 - 18:15:43 CST)
  • Rich Cook (Wed Jan 20 2010 - 17:38:13 CST)
  • John Stone (Thu Jan 14 2010 - 23:27:51 CST)
  • Rich Cook (Thu Jan 14 2010 - 19:03:21 CST)
  • John Stone (Thu Jan 14 2010 - 16:44:32 CST)
  • Rich Cook (Thu Jan 14 2010 - 15:02:33 CST)
  • Rich Cook (Mon Jan 11 2010 - 19:24:16 CST)
  • John Stone (Wed Dec 30 2009 - 13:03:05 CST)
  • Rich Cook (Thu Dec 17 2009 - 20:08:08 CST)
  • John Stone (Thu Dec 17 2009 - 19:52:56 CST)
  • Rich Cook (Thu Dec 17 2009 - 19:35:12 CST)
  • John Stone (Thu Dec 17 2009 - 19:20:35 CST)
  • Rich Cook (Thu Dec 17 2009 - 19:17:47 CST)
  • John Stone (Thu Dec 17 2009 - 19:05:29 CST)
  • Rich Cook (Thu Dec 17 2009 - 18:05:34 CST)
  • John Stone (Thu Dec 17 2009 - 17:03:07 CST)
  • Rich Cook (Thu Dec 17 2009 - 16:45:07 CST)
• VMD disables audio?
  • Jason Smith (Wed Oct 05 2022 - 15:20:09 CDT)
  • John Stone (Wed Oct 05 2022 - 12:58:43 CDT)
  • Strahs, Dr. Daniel Bernard (Wed Oct 05 2022 - 11:50:17 CDT)
• VMD Display Error - Detected X11 'Composite' extension
  • Shalabh Maroo (Fri Mar 09 2012 - 10:50:14 CST)
  • John Stone (Thu Mar 08 2012 - 22:29:26 CST)
  • Axel Kohlmeyer (Thu Mar 08 2012 - 21:06:08 CST)
  • Gianluca Interlandi (Thu Mar 08 2012 - 20:55:14 CST)
  • Shalabh Maroo (Thu Mar 08 2012 - 17:53:05 CST)
• VMD display freezing
  • Yogesh Sharma (Thu Aug 20 2020 - 09:32:46 CDT)
• vmd display problem
  • John Stone (Fri Dec 20 2013 - 17:31:17 CST)
  • Andy Lam (Sat Nov 30 2013 - 19:22:27 CST)
  • Dongsheng Zhang (Mon Jun 19 2006 - 13:17:23 CDT)
  • Dongsheng Zhang (Sun Jun 18 2006 - 22:04:53 CDT)
• VMD display problems
  • Seibold, Steve Allan (Fri Jun 16 2017 - 12:26:48 CDT)
• VMD display problems.
  • John Stone (Fri Jun 16 2017 - 14:46:55 CDT)
  • Vermaas, Joshua (Fri Jun 16 2017 - 13:11:38 CDT)
  • Seibold, Steve Allan (Fri Jun 16 2017 - 10:33:20 CDT)
• VMD display residues
  • Axel Kohlmeyer (Wed Aug 31 2011 - 06:22:04 CDT)
  • ban arn (Wed Aug 31 2011 - 04:28:35 CDT)
  • Axel Kohlmeyer (Tue Aug 30 2011 - 13:19:46 CDT)
  • ban arn (Tue Aug 30 2011 - 12:14:35 CDT)
• VMD display size and position
  • John Stone (Mon Oct 24 2005 - 17:08:36 CDT)
  • Jeffrey Tseng (Sun Oct 23 2005 - 11:55:57 CDT)
• vmd display water molecules error
  • Cun Zhang (Sun Sep 19 2010 - 21:16:00 CDT)
  • Cun Zhang (Sun Sep 19 2010 - 20:55:47 CDT)
  • John Stone (Sun Sep 19 2010 - 20:58:44 CDT)
  • John Stone (Sun Sep 19 2010 - 19:46:44 CDT)
  • Cun Zhang (Fri Sep 17 2010 - 02:37:03 CDT)
• VMD DMS plugin
  • Siyoung Kim (Mon May 15 2023 - 09:03:32 CDT)
  • Siyoung Kim (Mon May 15 2023 - 09:08:38 CDT)
• VMD does not display bonds
  • Behnam Ghalami (Fri Nov 09 2018 - 13:27:27 CST)
  • Peter Kroon (Fri Nov 09 2018 - 06:15:55 CST)
  • Vermaas, Joshua (Thu Nov 08 2018 - 11:45:59 CST)
  • Vermaas, Joshua (Wed Nov 07 2018 - 12:09:47 CST)
  • Behnam Ghalami (Wed Nov 07 2018 - 02:26:03 CST)
• VMD does not exit after running closest.tcl script in combination with bigdcd
  • John Stone (Fri Jun 10 2011 - 09:27:05 CDT)
  • maria goranovic (Fri Jun 10 2011 - 04:26:48 CDT)
  • maria goranovic (Fri Jun 10 2011 - 04:36:02 CDT)
  • John Stone (Thu Jun 09 2011 - 16:02:54 CDT)
  • maria goranovic (Wed Jun 08 2011 - 03:33:23 CDT)
  • Ajasja LjubetiÄ� (Tue Jun 07 2011 - 09:02:10 CDT)
  • Ajasja LjubetiÄ� (Tue Jun 07 2011 - 09:07:08 CDT)
  • maria goranovic (Tue Jun 07 2011 - 04:01:34 CDT)
• vmd does not read pqr file correct, vmd parse chain information incorrect.
  • Axel Kohlmeyer (Tue Apr 20 2010 - 19:18:09 CDT)
  • Knut Jørgen Bjuland (Tue Apr 20 2010 - 09:58:35 CDT)
  • Knut Jørgen Bjuland (Tue Apr 20 2010 - 09:53:57 CDT)
• VMD does not run on MacOS X 10.4 Tiger
  • Suckjoon JUN (Tue May 17 2005 - 03:03:54 CDT)
  • Fred de Lamotte (Tue May 17 2005 - 01:38:52 CDT)
  • Robert Brunner (Mon May 16 2005 - 22:11:18 CDT)
  • John Stone (Mon May 16 2005 - 19:41:03 CDT)
  • Suckjoon JUN (Mon May 16 2005 - 19:09:51 CDT)
• vmd does not run on the VNC client
  • superdirac (Thu Aug 25 2011 - 22:54:48 CDT)
  • superdirac (Thu Aug 25 2011 - 22:33:55 CDT)
  • John Stone (Thu Aug 25 2011 - 22:40:57 CDT)
  • John Stone (Thu Aug 25 2011 - 21:27:07 CDT)
  • peng liu (Thu Aug 25 2011 - 21:15:15 CDT)
• vmd does not start
  • Josh Vermaas (Mon Jan 25 2016 - 12:57:00 CST)
  • Kris Feher (Mon Jan 25 2016 - 11:41:09 CST)
• VMD does not start on Mac OS 10.3.8
  • Tomo Hayashi (Fri Mar 18 2005 - 23:41:48 CST)
  • Charles McCallum (Fri Mar 18 2005 - 17:07:22 CST)
  • John Stone (Fri Mar 18 2005 - 13:48:18 CST)
  • Tomo Hayashi (Tue Mar 15 2005 - 03:42:51 CST)
• VMD does not start on Mac OS 10.3.8 (problem was solved)
  • Tomo Hayashi (Sat Mar 19 2005 - 20:38:24 CST)
• VMD Does not start on my MacBook
  • John Stone (Thu Jul 17 2008 - 15:39:55 CDT)
  • Dr. Seth Olsen (Wed Jul 16 2008 - 21:15:57 CDT)
• VMD doesn't handle AMBER Restart files correct
  • John Stone (Sun Nov 01 2020 - 01:36:58 CDT)
  • John Stone (Tue Oct 20 2020 - 15:31:19 CDT)
  • viktor (Tue Oct 20 2020 - 14:38:06 CDT)
  • John Stone (Tue Oct 20 2020 - 14:28:12 CDT)
  • viktor (Mon Oct 19 2020 - 16:02:03 CDT)
  • viktor drobot (Tue Mar 03 2020 - 02:28:39 CST)
  • Josh Vermaas (Sun Feb 23 2020 - 16:36:58 CST)
  • viktor drobot (Sun Feb 23 2020 - 14:09:09 CST)
• VMD download page down
  • John Stone (Mon Nov 11 2019 - 09:27:19 CST)
  • davidiniming . (Mon Nov 11 2019 - 00:24:16 CST)
• vmd draw command for text
  • John Stone (Tue Feb 01 2011 - 09:47:07 CST)
  • kaushik lakkaraju (Sun Jan 30 2011 - 12:32:01 CST)
• vmd draw material affects previous drawings
  • Norouzi, Seyed (Mon Dec 16 2019 - 14:25:58 CST)
  • Axel Kohlmeyer (Mon Dec 16 2019 - 13:50:25 CST)
  • Norouzi, Seyed (Mon Dec 16 2019 - 12:59:28 CST)
• VMD drawing
  • Wesley Smith (Sun Jan 20 2008 - 21:08:27 CST)
  • John Stone (Sun Jan 20 2008 - 20:59:51 CST)
  • Wesley Smith (Sun Jan 20 2008 - 15:51:06 CST)
• VMD dumps core after OSPRay render completes
  • Chris Taylor (Tue Apr 12 2022 - 01:14:35 CDT)
  • John Stone (Sun Apr 10 2022 - 20:04:38 CDT)
  • Chris Taylor (Sun Apr 10 2022 - 15:46:02 CDT)
• VMD email support next two weeks
  • John Stone (Tue Dec 19 2006 - 01:17:02 CST)
  • Olaf Lenz (Tue Dec 19 2006 - 01:04:21 CST)
  • Christoph Weber (Mon Dec 18 2006 - 18:10:13 CST)
  • John Stone (Sun Dec 17 2006 - 21:19:42 CST)
• VMD Energy analysis
  • surya narayanan (Tue Mar 31 2020 - 16:45:40 CDT)
• VMD error
  • Ivan Gregoretti (Thu Jul 31 2014 - 07:49:34 CDT)
  • Ivan Gregoretti (Thu Jul 31 2014 - 07:31:04 CDT)
  • Kshatresh Dutta Dubey (Thu Jul 31 2014 - 05:56:41 CDT)
• VMD error - molefacture
  • Hasdemir, Hale Siir (Fri Jul 07 2023 - 10:00:29 CDT)
• VMD Error in Mac OSX
  • Janakiraman Balachandran (Fri Jul 21 2017 - 14:17:35 CDT)
  • John Stone (Fri Jul 21 2017 - 13:58:50 CDT)
  • John Stone (Fri Jul 21 2017 - 14:38:48 CDT)
  • Janakiraman Balachandran (Fri Jul 21 2017 - 14:32:10 CDT)
  • Janakiraman Balachandran (Fri Jul 21 2017 - 14:06:02 CDT)
  • John Stone (Fri Jul 21 2017 - 14:11:12 CDT)
  • John Stone (Fri Jul 21 2017 - 14:20:07 CDT)
  • Janakiraman Balachandran (Fri Jul 21 2017 - 13:14:22 CDT)
• VMD error loading dcd files
  • Daipayan Sarkar (Wed Oct 18 2017 - 21:01:39 CDT)
• vmd error message
  • John Stone (Fri Jan 04 2008 - 13:01:37 CST)
  • snoze pa (Fri Jan 04 2008 - 12:59:00 CST)
• vmd error message in Fedora 11
  • Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
  • snoze pa (Wed Jun 24 2009 - 11:04:15 CDT)
• VMD error messages on intel iMac
  • John Stone (Thu Feb 01 2007 - 16:02:46 CST)
  • Craig C. Martens (Wed Jan 31 2007 - 23:32:32 CST)
• vmd error related to opengl
  • FyD (Fri Feb 27 2009 - 18:12:02 CST)
  • John Stone (Fri Feb 27 2009 - 18:15:37 CST)
• vmd error related to tcl.h
  • John Stone (Mon Mar 05 2018 - 00:28:08 CST)
  • Axel Kohlmeyer (Sun Mar 04 2018 - 07:42:32 CST)
  • Mahmood Naderan (Sat Mar 03 2018 - 13:47:07 CST)
• vmd error saying "no atom selection"
  • Monika Madhavi (Fri Mar 06 2015 - 08:04:17 CST)
  • Monika Madhavi (Fri Mar 06 2015 - 02:56:46 CST)
• vmd error time too large/small to represent
  • Stephani Macalino (Tue Dec 04 2018 - 19:22:44 CST)
  • Vermaas, Joshua (Tue Dec 04 2018 - 11:42:01 CST)
  • Stephani Macalino (Mon Dec 03 2018 - 20:49:06 CST)
• vmd error xMDFF
  • CPMAS Chen (Thu Jun 25 2015 - 17:29:48 CDT)
  • Ryan McGreevy (Thu Jun 25 2015 - 17:14:58 CDT)
  • CPMAS Chen (Thu Jun 25 2015 - 17:01:59 CDT)
  • Ryan McGreevy (Thu Jun 25 2015 - 16:29:42 CDT)
  • CPMAS Chen (Thu Jun 25 2015 - 15:44:09 CDT)
  • CPMAS Chen (Tue Jun 16 2015 - 15:49:26 CDT)
  • John Stone (Tue Jun 16 2015 - 15:11:49 CDT)
  • CPMAS Chen (Thu Jun 11 2015 - 14:34:51 CDT)
• VMD Error!
  • Teletchéa Stéphane (Tue Jun 10 2003 - 02:06:50 CDT)
  • Ramesh K. Sistla (Tue Jun 10 2003 - 02:33:56 CDT)
  • Teletchéa Stéphane (Tue Jun 10 2003 - 01:40:55 CDT)
  • Ramesh K. Sistla (Tue Jun 10 2003 - 02:02:02 CDT)
• VMD Error! (fwd)
  • R.Sathyapriya (Thu Jun 12 2003 - 00:33:35 CDT)
  • John Stone (Wed Jun 11 2003 - 09:44:48 CDT)
  • R.Sathyapriya (Wed Jun 11 2003 - 10:10:31 CDT)
• VMD Error: vecsub: two vectors don't have the same size
  • Ropon-Palacios G. (Thu Aug 26 2021 - 19:45:47 CDT)
  • Amir Zeb (Thu Aug 26 2021 - 02:03:51 CDT)
• vmd exit tcl callback
  • John Stone (Tue Jan 11 2005 - 15:41:03 CST)
  • Luis Gracia (Mon Jan 10 2005 - 11:43:43 CST)
• VMD exits immediately after starting on Windows xp
  • John Stone (Sun Feb 22 2009 - 17:44:19 CST)
  • Robert Mullen (Sun Feb 22 2009 - 17:35:46 CST)
• VMD failed after FFTW installation
  • Axel Kohlmeyer (Fri Jul 15 2016 - 06:27:35 CDT)
  • John Stone (Thu Jul 14 2016 - 20:34:31 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2016 - 16:32:26 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2016 - 10:59:22 CDT)
  • Axel Kohlmeyer (Thu Jul 14 2016 - 10:31:15 CDT)
  • John Stone (Thu Jul 14 2016 - 09:35:36 CDT)
  • anu chandra (Thu Jul 14 2016 - 06:30:11 CDT)
  • Sourav Ray (Wed Jul 13 2016 - 03:49:00 CDT)
  • John Stone (Wed Jul 13 2016 - 01:09:53 CDT)
  • anu chandra (Tue Jul 12 2016 - 11:32:50 CDT)
  • anu chandra (Tue Jul 12 2016 - 07:19:06 CDT)
  • John Stone (Mon Jul 11 2016 - 12:00:33 CDT)
  • anu chandra (Mon Jul 11 2016 - 11:37:34 CDT)
• VMD Failing to Recognize Path
  • Nisler, Collin R. (Sat Jun 20 2020 - 16:21:28 CDT)
• VMD fails to run
  • Sabuj Pattanayek (Mon Aug 22 2005 - 11:17:58 CDT)
  • John Stone (Mon Aug 22 2005 - 01:37:12 CDT)
  • Axel Kohlmeyer (Sun Aug 21 2005 - 06:05:53 CDT)
  • Bob Johnson (Sat Aug 20 2005 - 21:43:55 CDT)
• VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800
  • Vlad Cojocaru (Fri Oct 07 2011 - 07:50:19 CDT)
  • Vlad Cojocaru (Wed Oct 05 2011 - 06:47:08 CDT)
• VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash
  • John Stone (Tue Jul 20 2010 - 11:04:44 CDT)
  • Ian Stokes-Rees (Tue Jul 20 2010 - 11:00:11 CDT)
  • John Stone (Tue Jul 20 2010 - 10:39:53 CDT)
  • Ian Stokes-Rees (Mon Jul 19 2010 - 12:10:16 CDT)
• VMD ffTK plugin: Error termination occurred at Gaussian input files generated for water interaction
  • Mayne, Christopher G (Sat Jan 20 2018 - 20:05:43 CST)
  • Ern Ong (Sat Jan 20 2018 - 07:09:26 CST)
• VMD ffTK: The determination of a correct spin multiplicity value
  • Giacomo Fiorin (Mon Jan 22 2018 - 08:31:45 CST)
  • Ern Ong (Mon Jan 22 2018 - 02:14:54 CST)
• vmd files between linux and windows
  • Sampo Karkola (Mon Oct 01 2007 - 01:51:11 CDT)
  • John Stone (Thu Sep 27 2007 - 10:19:30 CDT)
  • Sampo Karkola (Thu Sep 27 2007 - 07:52:16 CDT)
• VMD files to SDF
  • John Stone (Thu Aug 07 2008 - 12:52:48 CDT)
  • max_at_liaad.up.pt (Thu Aug 07 2008 - 05:20:59 CDT)
• vmd first installation
  • Francesco Pietra (Wed May 09 2007 - 01:24:48 CDT)
• VMD for ALTIX
  • John Stone (Thu May 05 2005 - 13:11:16 CDT)
  • Philip Fowler (Thu May 05 2005 - 11:04:18 CDT)
  • John Stone (Fri Dec 17 2004 - 10:31:05 CST)
  • ioana_at_pegasus.arc.nasa.gov (Thu Dec 16 2004 - 19:25:51 CST)
• VMD for Catalina
  • Krishna Suresh (Wed Oct 30 2019 - 17:35:22 CDT)
• VMD for Linux
  • Axel Kohlmeyer (Mon Jan 12 2009 - 09:11:00 CST)
  • bo baker (Mon Jan 12 2009 - 05:14:50 CST)
• VMD for Mac stopped working after updating to Catalina
  • fabio trovato (Fri Nov 01 2019 - 20:43:09 CDT)
• vmd for mac: range in isosurface representation
  • John Stone (Tue Mar 15 2011 - 10:35:28 CDT)
  • Passerone, Daniele (Tue Mar 15 2011 - 04:34:48 CDT)
• VMD for MacBook Pro -- NetCDF
  • John Stone (Wed May 06 2015 - 17:46:11 CDT)
  • Gabrielle Garcia (Wed May 06 2015 - 16:14:03 CDT)
  • Gabrielle Garcia (Wed May 06 2015 - 15:58:43 CDT)
  • John Stone (Wed May 06 2015 - 15:37:06 CDT)
  • Gabrielle Garcia (Wed May 06 2015 - 15:28:08 CDT)
  • Axel Kohlmeyer (Wed May 06 2015 - 15:31:18 CDT)
  • Axel Kohlmeyer (Wed May 06 2015 - 15:17:00 CDT)
  • Gabrielle Garcia (Wed May 06 2015 - 15:12:09 CDT)
  • Axel Kohlmeyer (Wed May 06 2015 - 14:53:00 CDT)
  • Gabrielle Garcia (Wed May 06 2015 - 13:44:05 CDT)
• VMD for macOS - easy install with new code-signed versions
  • Barry Isralewitz (Fri Dec 01 2023 - 17:29:19 CST)
• VMD for macOS -- easy install with new code-signed versions
  • Tru Huynh (Sat Dec 02 2023 - 11:38:23 CST)
  • Isralewitz, Barry (Fri Dec 01 2023 - 20:54:59 CST)
  • Isralewitz, Barry (Fri Dec 01 2023 - 19:29:06 CST)
• VMD for macOS Big Sur
  • John Stone (Thu Dec 10 2020 - 14:40:29 CST)
  • Pacci Evaristo, Felipe Fabricio (Mon Dec 07 2020 - 12:10:17 CST)
  • John Stone (Mon Dec 07 2020 - 12:01:06 CST)
  • Pacci Evaristo, Felipe Fabricio (Sun Dec 06 2020 - 16:35:36 CST)
• VMD for PPC64 SLES9?
  • Mike Hanby (Tue Jun 19 2007 - 11:53:44 CDT)
  • John Stone (Tue Jun 19 2007 - 10:49:49 CDT)
  • Mike Hanby (Tue Jun 19 2007 - 10:19:26 CDT)
• VMD for rectifying oxygen atoms ?
  • Marc Hömberger (Wed Jun 13 2012 - 09:53:31 CDT)
• VMD for SGI Altix/Prism, IBM AIX5, etc..
  • John Stone (Mon Jun 20 2005 - 09:58:17 CDT)
  • Oliver Otto (Mon Jun 20 2005 - 06:16:01 CDT)
  • John Stone (Wed May 25 2005 - 15:48:27 CDT)
• VMD for Win32 API based PC CAVE
  • John Stone (Mon Apr 02 2007 - 11:57:45 CDT)
  • John Stone (Mon Apr 02 2007 - 11:55:34 CDT)
  • Martijn Kragtwijk (Mon Apr 02 2007 - 10:56:26 CDT)
  • Michal Husak (Mon Apr 02 2007 - 08:00:34 CDT)
• VMD for windows 64-bit
  • John Stone (Sun Sep 19 2010 - 16:51:40 CDT)
  • Michel Espinoza-Fonseca (Wed Sep 15 2010 - 14:02:02 CDT)
• VMD for Windows 64bits
  • John Stone (Mon Apr 16 2007 - 11:01:48 CDT)
  • Lechuga, Javier (Mon Apr 16 2007 - 10:11:34 CDT)
• VMD for Windows with VRPN option
  • Stefano Ugolini (Wed Feb 20 2013 - 09:55:19 CST)
  • Stefano Ugolini (Fri Feb 15 2013 - 10:44:01 CST)
  • John Stone (Fri Feb 15 2013 - 09:46:16 CST)
  • Stefano Ugolini (Tue Feb 12 2013 - 08:04:51 CST)
• VMD forks to background; can I disable this?
  • John Stone (Wed Jan 17 2007 - 01:27:08 CST)
  • Rob (Wed Jan 17 2007 - 00:33:27 CST)
• vmd freezes for certain files on MacOs 10.10.4
  • John Stone (Mon Aug 17 2015 - 09:48:46 CDT)
  • Beat Meier (Thu Aug 13 2015 - 02:17:10 CDT)
• VMD freezes KDE under Linux Redhat 7.1
  • Stephane (Thu Oct 25 2001 - 09:16:30 CDT)
  • Laurence Wood (Wed Oct 24 2001 - 15:25:30 CDT)
  • Raik Grunberg (Wed Oct 24 2001 - 07:22:06 CDT)
• VMD freezing up when left alone
  • John Stone (Sun Sep 22 2013 - 20:34:01 CDT)
  • Tristan Croll (Sun Sep 22 2013 - 20:43:05 CDT)
  • Tristan Croll (Sun Sep 22 2013 - 18:34:46 CDT)
• VMD from remote workstation
  • Pawel Kedzierski (Tue Oct 10 2017 - 03:45:58 CDT)
• VMD from remote workstation (followup: crash with Intel drivers)
  • Pawel Kedzierski (Wed Oct 11 2017 - 03:39:23 CDT)
  • John Stone (Tue Oct 10 2017 - 10:10:58 CDT)
  • Pawel Kedzierski (Tue Oct 10 2017 - 06:21:30 CDT)
• VMD graphical representations: a few bugs
  • Tristan Croll (Thu Oct 10 2013 - 00:50:06 CDT)
• VMD GUI
  • John Stone (Wed Dec 01 2021 - 00:38:32 CST)
  • Francesco Pietra (Thu Nov 25 2021 - 02:15:38 CST)
• VMD H-bond Plugin error
  • Nancy Singh (Mon Jul 05 2021 - 05:55:37 CDT)
  • John Stone (Fri Jul 02 2021 - 11:31:29 CDT)
  • Mariano Spivak (Tue Jun 29 2021 - 11:00:12 CDT)
  • Nancy Singh (Tue Jun 29 2021 - 09:22:39 CDT)
• vmd hangs at creating CUDA pool
  • Bennion, Brian (Tue Aug 19 2014 - 11:41:12 CDT)
  • John Stone (Tue Aug 19 2014 - 11:34:16 CDT)
  • Bennion, Brian (Tue Aug 19 2014 - 11:11:17 CDT)
• VMD hangs on startup (MacOSX 10.14)
  • Nathan M. Lim (UCI) (Sun Nov 11 2018 - 00:00:45 CST)
  • Nathan M. Lim (UCI) (Wed Nov 07 2018 - 12:42:01 CST)
• VMD hangs up with a file size ~ 1.2 GB ?
  • Axel Kohlmeyer (Thu Jan 07 2010 - 06:04:14 CST)
  • Axel Kohlmeyer (Thu Jan 07 2010 - 05:55:29 CST)
  • maria goranovic (Thu Jan 07 2010 - 04:36:42 CST)
  • Wayne Dawson (Thu Jan 07 2010 - 01:58:26 CST)
  • Axel Kohlmeyer (Wed Jan 06 2010 - 22:22:56 CST)
  • Wayne Dawson (Wed Jan 06 2010 - 20:48:34 CST)
  • maria goranovic (Wed Jan 06 2010 - 15:58:02 CST)
  • Axel Kohlmeyer (Wed Jan 06 2010 - 10:48:28 CST)
  • John Stone (Wed Jan 06 2010 - 10:06:34 CST)
  • John Stone (Wed Jan 06 2010 - 10:10:51 CST)
  • maria goranovic (Wed Jan 06 2010 - 08:58:50 CST)
  • maria goranovic (Wed Jan 06 2010 - 08:26:00 CST)
  • Axel Kohlmeyer (Wed Jan 06 2010 - 07:41:05 CST)
  • Olaf Lenz (Wed Jan 06 2010 - 05:57:47 CST)
  • maria goranovic (Wed Jan 06 2010 - 04:32:30 CST)
• Vmd Hardware Requirements long MD visual/analysis
  • Vermaas, Josh (Mon Jan 16 2023 - 09:22:38 CST)
  • Hocine el khaoudi enyoury (Mon Jan 16 2023 - 07:27:18 CST)
• VMD has problem displaying glsl rendermode
  • John Stone (Mon Apr 12 2010 - 09:10:01 CDT)
  • Euclid Sun (Mon Apr 12 2010 - 09:04:29 CDT)
• vmd hbond Calculation
  • snoze pa (Thu Jan 28 2010 - 11:54:45 CST)
• VMD Hbond criterion vs. other software
  • debra ragland (Mon Feb 01 2016 - 09:32:05 CST)
  • Josh Vermaas (Mon Feb 01 2016 - 08:56:09 CST)
  • debra ragland (Mon Feb 01 2016 - 07:24:40 CST)
• VMD HBonds plugin
  • JC Gumbart (Thu Dec 08 2016 - 17:01:17 CST)
  • Ern Ong (Wed Dec 07 2016 - 00:16:32 CST)
  • JC Gumbart (Tue Dec 06 2016 - 23:54:08 CST)
  • Ern Ong (Tue Dec 06 2016 - 22:26:37 CST)
  • Karteek Kumar (Tue Dec 06 2016 - 22:23:44 CST)
  • Ern Ong (Tue Dec 06 2016 - 22:17:45 CST)
  • Karteek Kumar (Tue Dec 06 2016 - 22:07:46 CST)
  • Ern Ong (Tue Dec 06 2016 - 21:38:26 CST)
• VMD HBonds Plugin Produce Duplicate Results
  • Josh Vermaas (Tue Apr 26 2016 - 20:45:09 CDT)
  • Anthony Ma (Tue Apr 26 2016 - 17:57:06 CDT)
• VMD help - select model
  • shyama Prasad rao (Mon Aug 06 2018 - 01:03:18 CDT)
• VMD high DPI
  • John Stone (Sat Sep 18 2021 - 10:10:19 CDT)
  • yjcoshc (Sat Sep 18 2021 - 07:21:13 CDT)
  • John Stone (Fri Sep 17 2021 - 23:58:30 CDT)
  • Dow Hurst (Fri Sep 03 2021 - 12:45:22 CDT)
  • Alin-Marin Elena - STFC UKRI (Fri Jul 30 2021 - 03:06:33 CDT)
  • Michael Von Domaros (Fri Jul 30 2021 - 02:03:22 CDT)
  • Miro Astore (Fri Jul 30 2021 - 00:28:03 CDT)
  • Yujie Wu (Thu Jul 29 2021 - 23:54:33 CDT)
• VMD HOLE Result
  • daniel aguayo (Tue Jun 02 2009 - 17:03:26 CDT)
  • Hyundeok Song (Tue Jun 02 2009 - 14:05:59 CDT)
  • John Stone (Tue Jun 02 2009 - 09:53:26 CDT)
  • Hyundeok Song (Tue Jun 02 2009 - 08:49:20 CDT)
• VMD Images and Movies Tutorial: Working With Trajectories
  • Axel Kohlmeyer (Thu Sep 13 2007 - 09:04:08 CDT)
  • Roland Schmucki (Thu Sep 13 2007 - 03:32:05 CDT)
• VMD images/movies of SARS-CoV-2 work in NYT...
  • John Stone (Fri Oct 09 2020 - 11:07:32 CDT)
• VMD in "Big DCD mode"
  • Leonardo Palmieri (Fri May 21 2021 - 12:55:57 CDT)
• vmd in Debian
  • John Stone (Mon Oct 07 2013 - 09:08:35 CDT)
  • Johannes Schauer (Mon Oct 07 2013 - 02:11:37 CDT)
  • John Stone (Tue Sep 17 2013 - 11:05:14 CDT)
  • Benjamin Kaduk (Thu Sep 12 2013 - 18:19:33 CDT)
  • Johannes Schauer (Thu Sep 12 2013 - 07:18:32 CDT)
• vmd in fedora core 5
  • John Stone (Mon Jun 05 2006 - 10:32:15 CDT)
  • saravana prakash (Sun Jun 04 2006 - 07:39:16 CDT)
• VMD in hubzero
  • Thomas C Bishop (Mon Sep 14 2015 - 15:40:26 CDT)
• VMD in Linux, assigning a variable using awk
  • Peter Lai (Thu Sep 20 2012 - 16:23:13 CDT)
  • Joshua D. Moore (Thu Sep 20 2012 - 14:56:41 CDT)
  • Axel Kohlmeyer (Thu Sep 20 2012 - 14:40:52 CDT)
  • Joshua D. Moore (Thu Sep 20 2012 - 13:44:04 CDT)
• VMD in OS X Yosemite version 10.1.1.5
  • Ashar Malik (Sun May 06 2018 - 15:40:51 CDT)
  • Jacob F. Tande (Sun May 06 2018 - 10:58:19 CDT)
  • locuswendy (Sun May 06 2018 - 07:26:51 CDT)
  • Ashar Malik (Sat May 05 2018 - 23:45:48 CDT)
  • locuswendy (Sat May 05 2018 - 23:04:19 CDT)
• vmd in ubuntu on mac mini
  • John Stone (Fri Jan 04 2008 - 12:40:13 CST)
  • Syma Khalid (Sat Dec 29 2007 - 13:48:45 CST)
• vmd in windows 8 (64bite)
  • Nagarajan C (Tue Sep 09 2014 - 14:30:07 CDT)
  • Ajasja LjubetiÄ� (Tue Sep 09 2014 - 13:36:57 CDT)
  • Boshra Moradi (Tue Sep 09 2014 - 12:47:23 CDT)
• vmd information
  • Izrailev, Sergei (Thu Oct 09 2003 - 09:03:14 CDT)
  • John Stone (Wed Oct 08 2003 - 22:45:18 CDT)
  • Ioana Cozmuta (Wed Oct 08 2003 - 20:12:20 CDT)
• VMD input devices for USB-only Macs ?
  • John Stone (Tue Nov 22 2005 - 13:22:58 CST)
  • Marc Baaden (Tue Nov 22 2005 - 13:17:54 CST)
• VMD Install
  • Samuel Canner (Mon Feb 14 2022 - 16:44:00 CST)
• vmd install on ubuntu 15.04 -- no display
  • Liviu Zarbo (Thu May 26 2016 - 07:15:52 CDT)
  • John Stone (Wed May 25 2016 - 00:57:24 CDT)
  • Josh Vermaas (Mon May 23 2016 - 16:37:38 CDT)
  • Liviu Zarbo (Mon May 23 2016 - 03:03:52 CDT)
• VMD Install Question
  • McGuire, Kelly (Fri Apr 20 2018 - 14:06:13 CDT)
  • Vermaas, Joshua (Fri Apr 20 2018 - 14:00:30 CDT)
  • McGuire, Kelly (Fri Apr 20 2018 - 13:24:08 CDT)
• VMD installation
  • Saikat Pal (Fri May 24 2019 - 06:55:34 CDT)
  • John Stone (Mon Sep 18 2017 - 10:14:00 CDT)
  • João Ribeiro (Mon Sep 18 2017 - 07:39:09 CDT)
  • RAHUL SURESH (Mon Sep 18 2017 - 05:07:39 CDT)
  • Archana Sonawani-Jagtap (Fri Nov 25 2016 - 07:02:34 CST)
  • Abhishek TYAGI (Thu Nov 24 2016 - 09:34:11 CST)
  • John Stone (Thu Nov 24 2016 - 09:48:00 CST)
  • Archana Sonawani-Jagtap (Thu Nov 24 2016 - 02:56:44 CST)
  • John Stone (Thu Nov 24 2016 - 01:32:23 CST)
  • Archana Sonawani-Jagtap (Thu Nov 24 2016 - 01:12:42 CST)
  • John Stone (Wed Nov 23 2016 - 01:44:00 CST)
  • Archana Sonawani-Jagtap (Wed Nov 23 2016 - 01:34:45 CST)
  • Axel Kohlmeyer (Thu May 24 2007 - 16:13:53 CDT)
  • Francesco Pietra (Thu May 24 2007 - 16:04:29 CDT)
  • George Madalin Giambasu (Fri Apr 13 2007 - 11:39:50 CDT)
  • Axel Kohlmeyer (Fri Apr 13 2007 - 09:40:07 CDT)
  • John Stone (Fri Apr 13 2007 - 10:38:45 CDT)
  • dbg (Fri Apr 13 2007 - 01:09:54 CDT)
• VMD Installation Help
  • John Stone (Tue Sep 26 2006 - 12:55:52 CDT)
  • bertrand russell (Tue Sep 26 2006 - 12:05:26 CDT)
• vmd installation in linux
  • Ocar Campos (Fri Jan 08 2010 - 10:37:12 CST)
  • Axel Kohlmeyer (Fri Jan 08 2010 - 10:35:48 CST)
  • Ocar Campos (Fri Jan 08 2010 - 10:14:50 CST)
  • Axel Kohlmeyer (Fri Jan 08 2010 - 08:27:06 CST)
  • Ocar Campos (Fri Jan 08 2010 - 06:48:56 CST)
  • Axel Kohlmeyer (Sun Jan 03 2010 - 05:23:58 CST)
  • jani sahil (Sun Jan 03 2010 - 05:15:26 CST)
  • Prathit Chatterjee (Sun Jan 03 2010 - 04:09:13 CST)
  • Ocar Campos (Sat Jan 02 2010 - 06:20:15 CST)
  • John Stone (Sat Jan 02 2010 - 01:08:58 CST)
  • Prathit Chatterjee (Fri Jan 01 2010 - 22:08:09 CST)
• vmd installation in rehdat7.3
  • Axel Kohlmeyer (Tue Mar 22 2005 - 02:01:52 CST)
  • Priti Hansia (Mon Mar 21 2005 - 22:40:59 CST)
• VMD installation on Mac
  • John Stone (Mon Dec 05 2005 - 14:02:54 CST)
  • Stephen Walch (Mon Dec 05 2005 - 11:04:26 CST)
• VMD installation on Mac OSx 11 Bug Sur
  • John Stone (Sat Sep 18 2021 - 10:29:30 CDT)
  • Mauro Boero (Wed Sep 08 2021 - 06:44:35 CDT)
  • Mauro Boero (Mon Sep 06 2021 - 02:08:46 CDT)
• vmd installation on the server
  • John Stone (Tue Jan 31 2006 - 13:41:55 CST)
  • andrea spitaleri (Tue Jan 31 2006 - 03:25:19 CST)
  • John Stone (Mon Jan 30 2006 - 10:08:37 CST)
  • andrea spitaleri (Mon Jan 30 2006 - 09:31:46 CST)
• vmd installation problem
  • Axel Kohlmeyer (Thu Jul 12 2012 - 03:52:04 CDT)
  • oguz gurbulak (Thu Jul 12 2012 - 02:43:58 CDT)
  • Jernej Zidar (Thu Jul 12 2012 - 01:23:25 CDT)
  • Axel Kohlmeyer (Thu Jul 12 2012 - 01:53:15 CDT)
  • John Stone (Wed Jul 11 2012 - 09:59:27 CDT)
  • oguz gurbulak (Wed Jul 11 2012 - 09:54:16 CDT)
  • Axel Kohlmeyer (Fri Nov 10 2006 - 11:19:24 CST)
  • Andres Palencia (Fri Nov 10 2006 - 10:38:41 CST)
• VMD Installation problem on Ubuntu 8.10
  • maria goranovic (Tue Jan 20 2009 - 09:10:58 CST)
  • maria goranovic (Tue Jan 20 2009 - 08:27:12 CST)
  • John Stone (Tue Jan 20 2009 - 08:46:05 CST)
• vmd installation with Mesa installed in a non-standard location
  • Jing (Thu Jun 02 2005 - 23:00:34 CDT)
  • Luis Rosales (Thu Jun 02 2005 - 18:56:19 CDT)
  • John Stone (Thu Jun 02 2005 - 17:05:50 CDT)
  • Jing (Wed Jun 01 2005 - 23:53:37 CDT)
• VMD installation: Windows OpenGL
  • John Stone (Sun Jan 24 2010 - 13:33:16 CST)
• VMD intallation
  • John Stone (Mon Jan 07 2008 - 15:33:25 CST)
  • Satyan Sharma (Mon Jan 07 2008 - 12:52:39 CST)
• vmd intel compiler prebuild for 64 bit
  • John Stone (Tue Feb 24 2009 - 00:54:55 CST)
  • Roman Petrenko (Thu Feb 19 2009 - 19:29:09 CST)
• VMD interface and TkConsole font
  • Barry Isralewitz (Fri Dec 08 2017 - 15:36:09 CST)
  • João Ribeiro (Fri Dec 08 2017 - 08:47:09 CST)
  • Giacomo Fiorin (Fri Dec 08 2017 - 09:28:50 CST)
  • Giacomo Fiorin (Fri Dec 08 2017 - 07:15:24 CST)
  • Yanxiao Han (Thu Dec 07 2017 - 16:58:01 CST)
• vmd invalid connection error when launched
  • Huixi Violet Zhang (Tue Dec 04 2012 - 14:48:01 CST)
• VMD junt won't work on Windows
  • Stefan Boresch (Mon Jan 04 2021 - 04:23:11 CST)
  • John Stone (Thu Dec 31 2020 - 12:01:56 CST)
  • Gustavo Scheiffer (Fri Dec 18 2020 - 11:09:24 CST)
  • Stefan Boresch (Tue Dec 15 2020 - 14:16:56 CST)
  • Gustavo Scheiffer (Tue Dec 15 2020 - 13:03:45 CST)
  • John Stone (Tue Dec 15 2020 - 00:46:32 CST)
  • Gustavo Scheiffer (Sat Dec 12 2020 - 01:01:30 CST)
• vmd keeps crashing
  • Graham Jackson (Fri Jun 22 2018 - 04:31:28 CDT)
  • John Stone (Fri Jun 22 2018 - 04:45:37 CDT)
• vmd killed - memory problems?
  • Axel Kohlmeyer (Fri Nov 27 2015 - 12:01:38 CST)
  • Frank Zack (Fri Nov 27 2015 - 11:12:59 CST)
  • Frank Zack (Fri Nov 27 2015 - 10:35:04 CST)
  • Axel Kohlmeyer (Thu Nov 26 2015 - 07:27:01 CST)
  • Frank Zack (Thu Nov 26 2015 - 06:30:57 CST)
• VMD killed despite using $sel delete and unset sel
  • John Stone (Fri Jan 23 2015 - 23:25:25 CST)
  • John Stone (Fri Jan 23 2015 - 11:39:51 CST)
  • John Stone (Fri Jan 23 2015 - 00:20:52 CST)
  • MannyEful E (Thu Jan 22 2015 - 23:18:10 CST)
• VMD lammps plugin: a possible bug
  • Axel Kohlmeyer (Fri Jan 08 2010 - 08:19:15 CST)
  • Axel Kohlmeyer (Thu Jan 07 2010 - 12:03:23 CST)
  • MyLinkka (Thu Jan 07 2010 - 10:35:57 CST)
• VMD languaje information
  • L. Michel Espinoza-Fonseca (Tue Mar 04 2008 - 15:48:41 CST)
  • Andrew Dalke (Tue Mar 04 2008 - 14:44:16 CST)
  • L. Michel Espinoza-Fonseca (Tue Mar 04 2008 - 14:54:36 CST)
  • John Stone (Tue Mar 04 2008 - 13:53:24 CST)
  • Axel Kohlmeyer (Tue Mar 04 2008 - 11:57:08 CST)
  • Alba Colet Subirachs (Tue Mar 04 2008 - 10:24:09 CST)
• VMD license
  • Giacomo Fiorin (Thu Dec 16 2021 - 13:18:41 CST)
  • John Stone (Thu Dec 16 2021 - 12:34:12 CST)
  • John Stone (Thu Dec 16 2021 - 12:15:08 CST)
  • Nuno Cerqueira (Thu Dec 16 2021 - 11:55:55 CST)
  • Arthur Pereira da Fonseca (Thu Dec 16 2021 - 08:37:57 CST)
• vmd ligand fluctuation analysis
  • Ban Arn (Fri Dec 16 2011 - 09:28:41 CST)
• VMD limitation for loading large trajectory file
  • Axel Kohlmeyer (Fri Feb 15 2008 - 17:00:40 CST)
  • John Stone (Fri Feb 15 2008 - 17:03:15 CST)
  • Dong Xu (Fri Feb 15 2008 - 16:48:45 CST)
• vmd linking error
  • Richard Overstreet (Fri Jul 29 2016 - 11:53:57 CDT)
• vmd Linux 64
  • Axel Kohlmeyer (Fri Jul 31 2009 - 07:50:20 CDT)
  • Christian Wohlschlager (Fri Jul 31 2009 - 03:29:04 CDT)
• vmd linux binary / native build on netbsd
  • John Stone (Mon Apr 19 2004 - 17:08:18 CDT)
  • Brian Bennion (Mon Apr 19 2004 - 12:25:21 CDT)
  • Lubos Vrbka (Mon Apr 19 2004 - 10:52:07 CDT)
  • Brian Bennion (Fri Apr 16 2004 - 13:12:13 CDT)
  • Lubos Vrbka (Fri Apr 16 2004 - 11:58:44 CDT)
• vmd load molecule problem
  • John Stone (Fri Jun 17 2005 - 17:39:48 CDT)
  • Claire Zerafa (Fri Jun 17 2005 - 06:30:29 CDT)
• vmd MacOSX using dispdev
  • Giovanni Bellesia (Fri Jul 18 2008 - 16:00:00 CDT)
  • Kevin DeMarco (Fri Jul 18 2008 - 13:33:09 CDT)
  • John Stone (Thu Jul 17 2008 - 22:12:18 CDT)
  • Brian Kidd (Thu Jul 17 2008 - 18:08:03 CDT)
• vmd mailing list
  • Benjamin Bouvier (Fri Oct 16 2009 - 03:46:43 CDT)
  • Roman Petrenko (Thu Oct 15 2009 - 17:14:10 CDT)
• vmd maxAtom
  • Axel Kohlmeyer (Thu Feb 07 2008 - 05:58:14 CST)
  • C L Freeman (Thu Feb 07 2008 - 04:53:30 CST)
  • Axel Kohlmeyer (Wed Feb 06 2008 - 10:47:56 CST)
  • C L Freeman (Wed Feb 06 2008 - 10:10:30 CST)
• VMD meets Andy Warhol/Campbell's Soup on display wall
  • John Stone (Fri Sep 30 2011 - 12:22:48 CDT)
  • John Stone (Fri Sep 30 2011 - 12:19:23 CDT)
  • Thomas Bishop (Thu Sep 29 2011 - 08:15:59 CDT)
  • Axel Kohlmeyer (Thu Sep 29 2011 - 08:22:26 CDT)
  • Christian Wohlschlager (Thu Sep 29 2011 - 01:18:13 CDT)
  • Axel Kohlmeyer (Wed Sep 28 2011 - 19:46:03 CDT)
  • Thomas Bishop (Wed Sep 28 2011 - 18:43:14 CDT)
• VMD MEMBPLUGIN : MEMBRANE THICKNESS
  • Axel Kohlmeyer (Mon Jun 29 2015 - 05:21:13 CDT)
  • Life Sciences Inc (Mon Jun 29 2015 - 04:47:36 CDT)
• VMD membrane builder
  • Peter C. Lai (Thu May 31 2012 - 18:59:35 CDT)
  • JC Gumbart (Thu May 31 2012 - 16:20:22 CDT)
  • P.-L. Chau (Thu May 31 2012 - 07:03:34 CDT)
• VMD mismatch between CUDA runtime and GPU driver
  • Axel Kohlmeyer (Thu Jul 18 2013 - 03:31:33 CDT)
  • Greipel.Joachim_at_mh-hannover.de (Thu Jul 18 2013 - 02:01:31 CDT)
• VMD mods for the CAVE
  • John Stone (Fri May 16 2003 - 10:11:15 CDT)
• VMD Molden plugin crashes
  • John Stone (Fri Apr 29 2016 - 09:43:29 CDT)
  • Dimitrova, Maria (Fri Apr 29 2016 - 06:27:58 CDT)
• Vmd molecule rotation and translation
  • Anna (Tue Aug 09 2011 - 01:27:37 CDT)
  • Cun Zhang (Mon Aug 08 2011 - 21:34:01 CDT)
  • Anna (Mon Aug 08 2011 - 18:41:49 CDT)
• vmd moveby command inside loop
  • surya narayanan chandrasekaran (Fri Jul 12 2019 - 01:35:08 CDT)
  • Giacomo Fiorin (Thu Jul 11 2019 - 09:43:59 CDT)
  • Joao Ribeiro (Thu Jul 11 2019 - 09:23:32 CDT)
  • surya narayanan chandrasekaran (Thu Jul 11 2019 - 05:36:07 CDT)
• VMD movie
  • Axel Kohlmeyer (Tue Aug 30 2011 - 12:22:29 CDT)
  • ban arn (Tue Aug 30 2011 - 12:10:26 CDT)
  • John Stone (Tue Aug 30 2011 - 11:25:30 CDT)
  • Axel Kohlmeyer (Tue Aug 30 2011 - 11:28:37 CDT)
  • ban arn (Tue Aug 30 2011 - 10:31:58 CDT)
• VMD movie error
  • Norman Geist (Wed Aug 05 2015 - 00:12:33 CDT)
  • Kshatresh Dutta Dubey (Tue Aug 04 2015 - 17:00:51 CDT)
• VMD movie from XYZ coordinate if file has two type of atoms
  • Anil Kumar (Sun Dec 09 2007 - 22:12:58 CST)
  • John Stone (Fri Jan 04 2008 - 12:38:08 CST)
  • Eduard Schreiner (Tue Dec 11 2007 - 02:36:07 CST)
  • Anil Kumar (Mon Dec 10 2007 - 22:43:49 CST)
• VMD movie from XYZ coordinate if file has two type of atoms]
  • Anil Kumar (Wed Dec 12 2007 - 01:48:06 CST)
  • Axel Kohlmeyer (Tue Dec 11 2007 - 21:50:14 CST)
  • Anil Kumar (Tue Dec 11 2007 - 21:00:58 CST)
  • Eduard Schreiner (Tue Dec 11 2007 - 07:49:44 CST)
  • Anil Kumar (Tue Dec 11 2007 - 04:20:07 CST)
• VMD Movie Generator problem with "Image smoothing" set
  • Bjoern Olausson (Mon May 02 2011 - 06:26:54 CDT)
• vmd movie maker
  • huaer_at_myway.com (Wed Apr 06 2005 - 00:27:28 CDT)
  • John Stone (Tue Apr 05 2005 - 18:37:47 CDT)
  • Axel Kohlmeyer (Sun Apr 03 2005 - 03:11:22 CDT)
  • huaer_at_myway.com (Sat Apr 02 2005 - 17:35:30 CST)
• VMD Movie Plugin for MacOS
  • John Stone (Mon Oct 18 2021 - 11:41:56 CDT)
  • Mahsa (Sat Oct 16 2021 - 13:27:50 CDT)
• vmd movie ppmtompeg
  • Dan White (Thu Jan 26 2006 - 01:42:09 CST)
• VMD moviemaker
  • KK Sahu (Tue Jun 07 2011 - 05:22:34 CDT)
• vmd movies in powerpoint
  • Axel Kohlmeyer (Sun May 20 2007 - 12:23:32 CDT)
  • Syma Khalid (Sun May 20 2007 - 06:22:04 CDT)
  • Richard Casey (Sun May 20 2007 - 06:01:02 CDT)
• vmd mpg movies not working in office 2000
  • John Stone (Tue Jul 12 2005 - 19:18:32 CDT)
  • Jerry Ebalunode (Tue Jul 12 2005 - 18:33:49 CDT)
  • Jerry Ebalunode (Tue Jul 12 2005 - 18:33:19 CDT)
  • John Stone (Tue Jul 12 2005 - 17:49:35 CDT)
  • Brian Bennion (Tue Jul 12 2005 - 17:36:52 CDT)
• VMD MPI error
  • Lenz Fiedler (Thu Apr 07 2022 - 02:33:53 CDT)
  • Giacomo Fiorin (Wed Apr 06 2022 - 06:56:04 CDT)
  • Axel Kohlmeyer (Wed Apr 06 2022 - 05:48:26 CDT)
  • Lenz Fiedler (Wed Apr 06 2022 - 02:16:09 CDT)
  • Lenz Fiedler (Tue Apr 05 2022 - 01:29:09 CDT)
  • John Stone (Mon Apr 04 2022 - 11:37:34 CDT)
  • Lenz Fiedler (Mon Apr 04 2022 - 10:45:52 CDT)
  • John Stone (Mon Apr 04 2022 - 10:04:05 CDT)
  • Lenz Fiedler (Mon Apr 04 2022 - 09:39:17 CDT)
• vmd mpi parallel rendering with SLURM
  • René Hafner TUK (Sun Apr 09 2023 - 10:02:02 CDT)
  • Chris Taylor (Thu Apr 06 2023 - 21:14:08 CDT)
  • John Stone (Wed Apr 05 2023 - 23:38:27 CDT)
  • René Hafner TUK (Thu Mar 30 2023 - 02:28:18 CDT)
• vmd multiple residue
  • snoze pa (Wed Jul 25 2007 - 16:29:16 CDT)
  • snoze pa (Wed Jul 25 2007 - 16:37:24 CDT)
  • snoze pa (Wed Jul 25 2007 - 14:42:05 CDT)
• VMD Multiprocessing
  • John Stone (Mon Mar 11 2019 - 15:39:34 CDT)
  • Vermaas, Joshua (Mon Mar 11 2019 - 12:49:28 CDT)
  • McGuire, Kelly (Sun Mar 10 2019 - 17:55:43 CDT)
• VMD Mutate to nonstandard amino acid residue
  • Josh Vermaas (Tue Aug 06 2013 - 17:45:18 CDT)
  • George Omolloh (Tue Aug 06 2013 - 15:06:26 CDT)
• VMD Mutator, which side chain rotamer?
  • Peter Freddolino (Wed Jul 02 2008 - 07:52:43 CDT)
  • S. Jamal Rahi (Wed Jul 02 2008 - 07:30:32 CDT)
  • S. Jamal Rahi (Wed Jul 02 2008 - 07:20:52 CDT)
• vmd nearclip setting different from that used in povray render
  • John Stone (Tue Aug 19 2014 - 15:38:51 CDT)
  • Eric Smoll (Wed Aug 06 2014 - 16:52:02 CDT)
• VMD needs your vote.
  • Nir London (Mon Mar 16 2009 - 12:21:07 CDT)
• VMD NetCDF plugin on POWER9 CPUs (like ORNL Summit)
  • Chris Neale (Mon Jan 04 2021 - 19:47:17 CST)
  • John Stone (Thu Dec 31 2020 - 11:12:14 CST)
  • Chris Neale (Sat Dec 26 2020 - 11:49:32 CST)
• VMD never finishes reading vis. state file, stalls and hoggs CPU
  • Bjoern Olausson (Wed Nov 30 2011 - 10:11:53 CST)
  • John Stone (Wed Nov 30 2011 - 09:50:16 CST)
  • Axel Kohlmeyer (Mon Nov 28 2011 - 10:21:20 CST)
  • Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
  • Axel Kohlmeyer (Fri Nov 25 2011 - 09:38:01 CST)
  • Bjoern Olausson (Fri Nov 25 2011 - 05:36:26 CST)
  • Ajasja LjubetiÄ� (Fri Nov 25 2011 - 05:05:32 CST)
  • Bjoern Olausson (Fri Nov 25 2011 - 00:51:07 CST)
• VMD newbie question
  • John Stone (Wed Nov 17 2004 - 11:17:10 CST)
  • Luis Rosales (Fri Nov 12 2004 - 00:44:56 CST)
  • Justin Gullingsrud (Fri Nov 12 2004 - 00:28:22 CST)
  • Laura Lucan (Thu Nov 11 2004 - 22:04:01 CST)
  • Luis Gracia (Thu Nov 11 2004 - 19:24:46 CST)
  • Laura Lucan (Thu Nov 11 2004 - 16:18:34 CST)
• VMD NMWiz plugin
  • Ban Arn (Thu Jun 21 2012 - 11:16:08 CDT)
• vmd not able to generate new cartoon representation
  • t.shivam_at_iitg.ernet.in (Wed Sep 20 2017 - 02:37:31 CDT)
  • John Stone (Tue Sep 19 2017 - 14:55:58 CDT)
  • t.shivam_at_iitg.ernet.in (Fri Sep 15 2017 - 00:46:10 CDT)
• VMD not displaying Gromacs TRR format traj
  • Giacomo Fiorin (Thu Aug 26 2021 - 12:44:50 CDT)
  • Prithwish Nandi (Thu Aug 26 2021 - 11:36:12 CDT)
• VMD not displaying represenations by line
  • John Stone (Thu Jan 03 2013 - 09:59:07 CST)
  • maria goranovic (Thu Jan 03 2013 - 04:24:09 CST)
  • maria goranovic (Fri Dec 21 2012 - 03:19:26 CST)
  • John Stone (Thu Dec 20 2012 - 15:33:36 CST)
  • maria goranovic (Thu Dec 20 2012 - 09:53:05 CST)
  • John Stone (Thu Dec 20 2012 - 09:49:40 CST)
  • maria goranovic (Thu Dec 20 2012 - 04:48:03 CST)
• VMD not loading in Suse 11.1
  • Axel Kohlmeyer (Fri Jan 23 2009 - 09:04:18 CST)
  • Andrew James Bennett (Fri Jan 23 2009 - 05:43:05 CST)
• VMD not reading plain mdcrd trajectories
  • John Stone (Wed Sep 25 2019 - 10:14:31 CDT)
  • viktor drobot (Wed Sep 25 2019 - 10:16:20 CDT)
  • John Stone (Wed Sep 25 2019 - 08:45:14 CDT)
  • John Stone (Wed Sep 25 2019 - 01:32:23 CDT)
  • viktor drobot (Fri Sep 20 2019 - 10:51:17 CDT)
  • viktor drobot (Fri Sep 20 2019 - 10:53:18 CDT)
  • Axel Kohlmeyer (Fri Sep 20 2019 - 10:26:47 CDT)
  • John Stone (Fri Sep 20 2019 - 09:50:02 CDT)
  • viktor drobot (Fri Sep 20 2019 - 09:41:40 CDT)
  • viktor drobot (Sun Sep 15 2019 - 08:43:38 CDT)
• VMD not starting after nvidia update
  • Remya Ann (Thu Aug 24 2017 - 03:29:44 CDT)
  • John Stone (Wed Aug 23 2017 - 10:37:03 CDT)
  • Remya Ann (Wed Aug 23 2017 - 05:52:36 CDT)
• vmd not starting up on Fedora core 3 linux
  • John Stone (Thu Mar 03 2005 - 15:17:44 CST)
  • Haberl Florian (Wed Mar 02 2005 - 03:44:07 CST)
• vmd not starting up on Fedora core 3 linux , InsightII to blame
  • John Stone (Sun Mar 06 2005 - 21:46:07 CST)
  • James MacDonald (Fri Mar 04 2005 - 06:33:28 CST)
  • John Stone (Thu Mar 03 2005 - 15:17:02 CST)
  • James MacDonald (Tue Mar 01 2005 - 17:46:09 CST)
  • John Stone (Tue Mar 01 2005 - 17:29:13 CST)
  • James MacDonald (Tue Mar 01 2005 - 17:17:15 CST)
  • Dr. Daniel James White PhD (Wed Jan 12 2005 - 01:33:05 CST)
• vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver
  • Dr. Daniel James White PhD (Wed Jan 12 2005 - 00:53:22 CST)
  • John Stone (Tue Jan 11 2005 - 11:09:17 CST)
  • Axel Kohlmeyer (Tue Jan 11 2005 - 10:50:57 CST)
  • Bogdan Costescu (Tue Jan 11 2005 - 10:42:25 CST)
  • Dr. Daniel James White PhD (Tue Jan 11 2005 - 07:42:45 CST)
  • John Stone (Mon Jan 10 2005 - 18:44:30 CST)
  • John Stone (Mon Jan 10 2005 - 18:05:54 CST)
  • Bogdan Costescu (Mon Jan 10 2005 - 09:56:14 CST)
  • Dr. Daniel James White PhD (Mon Jan 10 2005 - 01:20:31 CST)
  • Axel Kohlmeyer (Fri Jan 07 2005 - 07:20:17 CST)
  • Dr. Daniel James White PhD (Fri Jan 07 2005 - 07:12:37 CST)
  • Axel Kohlmeyer (Fri Jan 07 2005 - 06:37:21 CST)
  • Dr. Daniel James White PhD (Fri Jan 07 2005 - 06:13:04 CST)
  • Axel Kohlmeyer (Fri Jan 07 2005 - 05:40:13 CST)
  • Dr. Daniel James White PhD (Fri Jan 07 2005 - 02:15:08 CST)
  • John Stone (Thu Jan 06 2005 - 17:28:14 CST)
  • Axel Kohlmeyer (Thu Jan 06 2005 - 09:42:26 CST)
  • Dr. Daniel James White PhD (Thu Jan 06 2005 - 05:27:34 CST)
• VMD not working anymore
  • sjcav_at_aros.net (Sat Jun 29 2002 - 01:26:26 CDT)
• VMD not working on MacOS X 10.6.7
  • John Stone (Thu Jun 23 2011 - 12:37:18 CDT)
  • Daniel Aiello (Thu Jun 23 2011 - 12:26:20 CDT)
• vmd not working on remote server
  • POTTER T.D. (Wed Oct 18 2017 - 05:31:53 CDT)
  • John Stone (Tue Oct 17 2017 - 14:10:00 CDT)
  • POTTER T.D. (Tue Oct 17 2017 - 08:20:07 CDT)
• VMD not working with a Matrox Graphic Card
  • John Stone (Thu Oct 26 2006 - 11:22:24 CDT)
  • nunolf_at_ci.uc.pt (Thu Oct 26 2006 - 11:09:03 CDT)
• VMD not working with Yosemite
  • John Stone (Fri Apr 10 2015 - 16:07:30 CDT)
  • nupur bansal (Thu Jan 15 2015 - 20:38:54 CST)
• VMD now uses Tcl 7.6
  • Andrew Dalke (Wed Mar 05 1997 - 22:47:42 CST)
• VMD object exported to Pymol
  • John Stone (Wed Feb 23 2005 - 16:19:17 CST)
  • John Stone (Wed Feb 23 2005 - 13:44:32 CST)
  • John Stone (Mon Feb 21 2005 - 11:58:32 CST)
  • Peter Holm (Mon Feb 21 2005 - 07:47:52 CST)
• VMD on a DEC?
  • Andrew Dalke (Wed Jan 14 1998 - 22:07:30 CST)
  • s.hogg_at_ic.ac.uk (Wed Jan 14 1998 - 07:15:56 CST)
• VMD on a WINDOWS 7 64-bit computer
  • Peter Freddolino (Wed Mar 27 2019 - 20:42:37 CDT)
  • Stefan Boresch (Wed Mar 27 2019 - 03:01:06 CDT)
• VMD on AIX --- successful build, failed execution
  • Rich Cook (Wed Dec 16 2009 - 14:07:52 CST)
  • John Stone (Wed Dec 16 2009 - 10:56:56 CST)
  • Rich Cook (Tue Dec 15 2009 - 16:26:00 CST)
• VMD on Blue Waters
  • Avisek Das (Fri Dec 20 2013 - 13:05:17 CST)
  • John Stone (Fri Dec 20 2013 - 12:47:52 CST)
  • Avisek Das (Fri Dec 20 2013 - 12:45:45 CST)
  • John Stone (Fri Dec 20 2013 - 12:38:47 CST)
  • Avisek Das (Fri Dec 20 2013 - 12:32:48 CST)
  • John Stone (Fri Dec 20 2013 - 12:11:35 CST)
  • Avisek Das (Fri Dec 20 2013 - 11:55:25 CST)
• VMD on Catalina
  • miyatake (Fri Jul 17 2020 - 02:20:18 CDT)
• vmd on core 2 duo
  • John Stone (Mon Mar 12 2007 - 09:21:47 CDT)
  • matteus.lindgren_at_chem.umu.se (Mon Mar 12 2007 - 03:26:30 CDT)
• VMD on Cray/CNL
  • John Stone (Fri May 01 2009 - 10:36:23 CDT)
  • Jim Pfaendtner (Fri May 01 2009 - 07:56:02 CDT)
  • John Stone (Fri May 01 2009 - 01:20:53 CDT)
  • Jim Pfaendtner (Fri May 01 2009 - 01:03:07 CDT)
• VMD on Debian Linux Urgent
  • Luis Gracia (Mon Jun 13 2005 - 16:18:00 CDT)
  • John Stone (Mon Jun 13 2005 - 13:27:04 CDT)
  • Nara Dashdorj (Sat Jun 11 2005 - 20:12:41 CDT)
• vmd on fedora
  • John Stone (Tue Dec 09 2008 - 10:34:33 CST)
  • Taufik Al-Sarraj (Tue Dec 09 2008 - 10:25:37 CST)
  • John Stone (Mon Dec 08 2008 - 20:34:48 CST)
  • Taufik Al-Sarraj (Mon Dec 08 2008 - 16:57:24 CST)
• Vmd on Fedora 9
  • Al-Ali, Hassan (Wed Jul 30 2008 - 19:16:09 CDT)
  • Al-Ali, Hassan (Wed Jul 30 2008 - 15:12:38 CDT)
  • Axel Kohlmeyer (Wed Jul 30 2008 - 15:24:29 CDT)
  • Axel Kohlmeyer (Wed Jul 30 2008 - 12:18:11 CDT)
  • Al-Ali, Hassan (Wed Jul 30 2008 - 11:43:28 CDT)
• VMD on HPC
  • Ashar Malik (Wed Jul 01 2020 - 04:52:54 CDT)
  • Axel Kohlmeyer (Wed Jul 01 2020 - 04:52:33 CDT)
  • Adupa Vasista (Wed Jul 01 2020 - 04:06:33 CDT)
  • Ashar Malik (Wed Jul 01 2020 - 03:19:24 CDT)
  • Adupa Vasista (Wed Jul 01 2020 - 00:00:28 CDT)
• VMD on Intel core i3 + Ubuntu
  • masci002_at_umn.edu (Wed Jun 08 2011 - 18:34:55 CDT)
  • John Stone (Tue Jun 07 2011 - 22:48:47 CDT)
  • John Stone (Tue Jun 07 2011 - 19:31:07 CDT)
  • masci002_at_umn.edu (Tue Jun 07 2011 - 19:03:26 CDT)
• VMD on laptop with ATI Radeon 3650
  • Mark Cunningham (Tue Jul 21 2009 - 10:00:33 CDT)
  • John Stone (Mon Jul 20 2009 - 16:09:18 CDT)
  • Ramon Rocha (Mon Jul 20 2009 - 16:00:40 CDT)
• VMD on Linux Fedora Core 2
  • Eugen Leitl (Fri Oct 15 2004 - 01:24:29 CDT)
  • John Stone (Thu Oct 14 2004 - 21:30:29 CDT)
  • Luis Rosales (Wed Oct 13 2004 - 17:10:31 CDT)
  • Brian Bennion (Wed Oct 13 2004 - 12:26:39 CDT)
  • EPF \(Esben Peter Friis\) (Wed Oct 13 2004 - 10:20:43 CDT)
  • Eugen Leitl (Wed Oct 13 2004 - 11:28:18 CDT)
  • Bogdan Costescu (Wed Oct 13 2004 - 09:11:15 CDT)
  • Y U Sasidhar (Wed Oct 13 2004 - 08:46:24 CDT)
  • Fernandez-Alonso, F (Felix) (Wed Oct 13 2004 - 06:53:05 CDT)
• VMD on Linux RH9 with ATI's fglrx-4.3.0-3.14.6 1280x1024@100Hz dumping core ... any helpful advice :>?
  • John Stone (Tue Dec 21 2004 - 10:22:46 CST)
  • chris.harwell_at_pharma.novartis.com (Fri Dec 17 2004 - 15:27:21 CST)
• VMD on Linux Suse
  • SCIPIONI Roberto (Wed Dec 19 2007 - 01:21:21 CST)
  • John Stone (Fri Jan 04 2008 - 12:35:27 CST)
  • SCIPIONI Roberto (Wed Dec 19 2007 - 01:26:44 CST)
  • John Stone (Wed Dec 19 2007 - 01:34:42 CST)
• VMD on LINUX with CAVELib
  • John Stone (Sun Apr 30 2006 - 00:32:53 CDT)
  • ELENA S SLOBOUNOV (Fri Apr 28 2006 - 16:25:13 CDT)
• vmd on mac 9.1
  • eric hu (Wed Jul 17 2002 - 11:00:35 CDT)
  • MengJuei Hsieh (Tue Jul 16 2002 - 15:56:54 CDT)
  • John Stone (Tue Jul 16 2002 - 14:05:06 CDT)
  • eric hu (Tue Jul 16 2002 - 13:39:14 CDT)
• VMD on Mac OS Catalina (10.15 beta): Bad CPU type in executable
  • Tai Bui (Thu Jun 06 2019 - 08:17:58 CDT)
• VMD on Mac OS X, converter problem
  • Joshua D. Moore (Mon Oct 08 2012 - 10:39:31 CDT)
  • DanLiu (Mon Oct 08 2012 - 02:44:56 CDT)
• VMD on MacOSX 10.6 Snow Leopard: fast
  • David Poger (Mon Sep 07 2009 - 04:01:48 CDT)
  • John Stone (Mon Sep 07 2009 - 16:31:54 CDT)
  • Christoph Weber (Tue Sep 01 2009 - 13:30:07 CDT)
  • Joshua D. Moore (Mon Aug 31 2009 - 22:20:51 CDT)
  • Christoph Weber (Mon Aug 31 2009 - 18:31:11 CDT)
• Vmd on MACOSX awkward msg at startup and error when running Ubq simulation
  • John Stone (Mon Oct 06 2008 - 15:57:08 CDT)
  • Montoya, Jesus Gerardo Galaz (Mon Oct 06 2008 - 14:58:39 CDT)
• vmd on Microsoft 2000 and Phantom
  • John Stone (Tue Jun 22 2010 - 11:26:18 CDT)
  • Axel Kohlmeyer (Tue Jun 22 2010 - 08:48:53 CDT)
  • Christian Wohlschlager (Tue Jun 22 2010 - 07:51:03 CDT)
• Vmd on Monterey
  • John Stone (Sun Dec 26 2021 - 23:36:21 CST)
  • Osman, Roman (Sat Dec 25 2021 - 07:57:55 CST)
  • John Stone (Sat Dec 25 2021 - 00:18:50 CST)
  • Nathan Kern (Fri Dec 24 2021 - 10:02:34 CST)
  • Osman, Roman (Thu Dec 23 2021 - 22:31:03 CST)
• VMD on multi-projector digital planetarium dome
  • Peter van Heusden (Mon Sep 30 2019 - 07:53:15 CDT)
• VMD on NetBSD
  • John Stone (Wed Sep 01 2004 - 10:59:00 CDT)
  • Lubos Vrbka (Wed Sep 01 2004 - 10:56:36 CDT)
  • John Stone (Wed Sep 01 2004 - 09:37:17 CDT)
  • Lubos Vrbka (Wed Sep 01 2004 - 02:18:16 CDT)
  • John Stone (Tue Aug 31 2004 - 15:32:44 CDT)
  • Lubos Vrbka (Mon Aug 30 2004 - 05:53:10 CDT)
  • John Stone (Fri Aug 27 2004 - 17:21:39 CDT)
  • John Stone (Thu Aug 26 2004 - 14:07:43 CDT)
  • Lubos Vrbka (Thu Aug 26 2004 - 04:28:53 CDT)
• vmd on opteron
  • Leandro Martínez (Fri May 26 2006 - 15:20:54 CDT)
  • John Stone (Fri May 26 2006 - 15:12:12 CDT)
  • Leandro Martínez (Fri May 26 2006 - 15:01:30 CDT)
• VMD on Playstation 3
  • Axel Kohlmeyer (Fri Sep 14 2007 - 07:39:16 CDT)
  • Jeffry D Madura (Fri Sep 14 2007 - 06:30:58 CDT)
• vmd on ppc (G4)
  • John Stone (Mon Feb 23 2004 - 16:30:39 CST)
  • apeyser_at_newssun.med.miami.edu (Mon Feb 23 2004 - 14:07:25 CST)
• vmd on raspberry pi
  • John Stone (Thu Feb 20 2020 - 13:44:01 CST)
  • Joe Konecny (Thu Feb 20 2020 - 13:32:45 CST)
  • John Stone (Thu Feb 20 2020 - 13:24:56 CST)
  • Joe Konecny (Thu Feb 20 2020 - 13:13:47 CST)
  • Joe Konecny (Wed Feb 19 2020 - 14:06:27 CST)
  • John Stone (Wed Feb 19 2020 - 13:00:49 CST)
  • Joe Konecny (Wed Feb 19 2020 - 09:39:31 CST)
• vmd on redhat6.2 and elsa gladiac
  • John Stone (Tue Aug 15 2000 - 22:11:05 CDT)
  • Kim Branson (Tue Aug 15 2000 - 21:32:06 CDT)
• VMD on redhat9
  • John Stone (Thu May 15 2003 - 16:00:04 CDT)
  • Michele Seeber (Thu May 15 2003 - 12:57:59 CDT)
  • John Stone (Wed Apr 30 2003 - 20:48:02 CDT)
  • Michele Seeber (Wed Apr 30 2003 - 03:19:25 CDT)
  • John Stone (Tue Apr 29 2003 - 13:41:30 CDT)
  • Michele Seeber (Tue Apr 29 2003 - 03:31:40 CDT)
• VMD on Solaris 2.x doesn't compile
  • John Stone (Fri May 02 2003 - 13:08:22 CDT)
  • John Stone (Fri May 02 2003 - 09:52:53 CDT)
  • Prabhakar Reddy Gudla (Fri May 02 2003 - 00:45:53 CDT)
• VMD on Suse 11.1 w/ NVIDIA dies.
  • Thomas C. Bishop (Thu Sep 10 2009 - 17:44:05 CDT)
  • John Stone (Thu Sep 10 2009 - 17:24:03 CDT)
  • Thomas C. Bishop (Thu Sep 10 2009 - 16:53:19 CDT)
  • Axel Kohlmeyer (Wed Sep 09 2009 - 09:17:55 CDT)
  • John Stone (Tue Sep 08 2009 - 10:57:12 CDT)
  • Thomas C. Bishop (Tue Sep 08 2009 - 16:55:55 CDT)
  • Axel Kohlmeyer (Sat Sep 05 2009 - 14:33:34 CDT)
  • Bishop, Thomas C (Fri Sep 04 2009 - 17:52:35 CDT)
• vmd on Ubuntu: tcl howto
  • John Stone (Thu May 24 2012 - 10:45:46 CDT)
  • Axel Kohlmeyer (Wed May 23 2012 - 07:09:28 CDT)
  • Eros Albertazzi (Wed May 23 2012 - 05:37:57 CDT)
• vmd on windows
  • John Stone (Mon Dec 19 2011 - 17:26:39 CST)
  • Sergio Decherchi (Fri Dec 16 2011 - 09:16:42 CST)
• VMD on Windows 11
  • Atanu Acharya (Wed Feb 08 2023 - 15:39:47 CST)
  • Pol Garcia-Segura (Wed Feb 08 2023 - 13:18:56 CST)
  • Axel Kohlmeyer (Wed Feb 08 2023 - 12:57:05 CST)
  • Pol Garcia-Segura (Wed Feb 08 2023 - 11:58:56 CST)
• VMD on Windows64
  • John Stone (Mon Dec 19 2011 - 16:57:52 CST)
  • Mirco Wahab (Mon Dec 19 2011 - 16:51:45 CST)
• VMD on XFree86 4.0 /w hardware acceleration...
  • John Stone (Thu May 25 2000 - 22:14:34 CDT)
  • John Stone (Fri May 19 2000 - 18:22:39 CDT)
• VMD only read 58 frames from XYZ file
  • Andrew Dalke (Thu Nov 06 1997 - 04:24:54 CST)
  • Keith Refson (Wed Nov 05 1997 - 13:56:40 CST)
  • Ivo Hofacker (Wed Nov 05 1997 - 13:38:02 CST)
  • Keith Refson (Wed Nov 05 1997 - 06:42:17 CST)
• VMD open GL Display problem
  • Axel Kohlmeyer (Tue Feb 27 2007 - 11:43:12 CST)
  • John Stone (Tue Feb 27 2007 - 11:20:36 CST)
  • christopher (Tue Feb 27 2007 - 10:52:51 CST)
  • L. Michel Espinoza-Fonseca (Tue Feb 27 2007 - 10:06:26 CST)
  • Ayþe Özlem Sezerman (Tue Feb 27 2007 - 06:52:19 CST)
• Vmd Opengl display do not show anything
  • deniszhu1991 (Thu Apr 02 2015 - 13:14:35 CDT)
  • John Stone (Thu Apr 02 2015 - 11:17:06 CDT)
  • Denis Zhu (Thu Apr 02 2015 - 09:25:13 CDT)
• VMD openGL over ssh from a server with NVIDIA
  • Gianluca Interlandi (Fri Dec 08 2023 - 16:17:17 CST)
  • PaweÅ‚ KÄ™dzierski (Fri Nov 03 2023 - 02:36:17 CDT)
  • Gianluca Interlandi (Thu Nov 02 2023 - 16:46:05 CDT)
  • Axel Kohlmeyer (Thu Nov 02 2023 - 16:54:02 CDT)
  • Axel Kohlmeyer (Thu Nov 02 2023 - 16:27:46 CDT)
  • Gianluca Interlandi (Thu Nov 02 2023 - 15:01:03 CDT)
  • Diego Gomes (Thu Nov 02 2023 - 14:41:33 CDT)
  • Gianluca Interlandi (Tue Oct 31 2023 - 21:41:13 CDT)
  • Victor Kwan (Tue Oct 31 2023 - 20:31:14 CDT)
  • Victor Kwan (Tue Oct 31 2023 - 16:44:58 CDT)
  • Gianluca Interlandi (Tue Oct 31 2023 - 17:05:44 CDT)
  • Gianluca Interlandi (Mon Oct 30 2023 - 19:13:02 CDT)
• VMD OrcaPlugin Bug
  • McGuire, Kelly (Sat Mar 30 2019 - 01:50:26 CDT)
  • John Stone (Thu Mar 28 2019 - 09:51:27 CDT)
  • McGuire, Kelly (Thu Mar 21 2019 - 17:34:38 CDT)
  • Vermaas, Joshua (Thu Mar 21 2019 - 16:41:52 CDT)
  • McGuire, Kelly (Thu Mar 21 2019 - 14:09:08 CDT)
  • McGuire, Kelly (Thu Mar 21 2019 - 13:49:29 CDT)
• vmd paratool - getting GAUSSIAN charges
  • Goutham (Tue Aug 31 2010 - 10:51:48 CDT)
• VMD patch, console w/ built-in command editing
  • John Stone (Fri May 22 2020 - 10:56:18 CDT)
  • John Stone (Wed May 20 2020 - 11:45:03 CDT)
  • Giacomo Fiorin (Wed May 20 2020 - 11:09:16 CDT)
  • John Stone (Wed May 20 2020 - 10:26:21 CDT)
  • John Stone (Wed May 20 2020 - 10:33:45 CDT)
  • Giacomo Fiorin (Wed May 20 2020 - 10:06:50 CDT)
• VMD PDB to LEAP Readable PDB
  • John Stone (Fri Oct 06 2006 - 14:59:36 CDT)
  • Akshay Patny (Wed Oct 04 2006 - 20:09:14 CDT)
• VMD performance bottlenecks
  • John Stone (Tue Jun 27 2006 - 17:00:26 CDT)
  • Sacerdoti, Federico (Tue Jun 27 2006 - 09:24:16 CDT)
• VMD performance on Mac OSX, 10.2.8
  • John Stone (Wed Oct 15 2003 - 14:36:32 CDT)
  • Miguel (Wed Oct 15 2003 - 14:34:55 CDT)
  • taeho.kim_at_utoronto.ca (Wed Oct 15 2003 - 13:58:45 CDT)
  • John Stone (Wed Oct 15 2003 - 13:24:02 CDT)
  • John Stone (Tue Oct 14 2003 - 15:43:18 CDT)
  • taeho.kim_at_utoronto.ca (Tue Oct 14 2003 - 13:11:26 CDT)
• VMD performance on Vista
  • John Stone (Thu Feb 01 2007 - 17:10:47 CST)
  • Christoph Weber (Thu Feb 01 2007 - 16:23:58 CST)
• VMD Periodic cells
  • Olaf Lenz (Wed Aug 12 2009 - 09:06:01 CDT)
  • Olaf Lenz (Wed Aug 12 2009 - 08:43:09 CDT)
  • Florentina Tofoleanu (Wed Aug 12 2009 - 07:03:53 CDT)
• VMD plugin error src/webpdbplugin.c
  • Axel Kohlmeyer (Sun Aug 12 2007 - 18:06:37 CDT)
  • AustinSmall_at_comcast.net (Sun Aug 12 2007 - 18:08:17 CDT)
• VMD plugin for abinit
  • John Stone (Thu Dec 17 2009 - 13:38:12 CST)
  • Rob (Tue Dec 15 2009 - 21:47:08 CST)
• VMD plugin for Desmond
  • John Stone (Tue Jan 20 2009 - 09:34:49 CST)
  • ÖÜÎIJý (Tue Jan 20 2009 - 08:58:31 CST)
  • Axel Kohlmeyer (Tue Jan 20 2009 - 08:58:24 CST)
  • John Stone (Tue Jan 20 2009 - 08:42:20 CST)
  • ÖÜÎIJý (Tue Jan 20 2009 - 08:23:13 CST)
• VMD Plugin update for Windows problem
  • John Stone (Sun Feb 12 2006 - 16:21:09 CST)
  • Mikolai Fajer (Sat Feb 11 2006 - 07:58:21 CST)
• VMD plugin: filenames supposed to have dot in it?!?!
  • Rob (Thu Dec 17 2009 - 18:12:46 CST)
  • John Stone (Wed Dec 16 2009 - 10:51:29 CST)
  • Rob (Wed Dec 16 2009 - 01:07:20 CST)
• VMD plugin: Membrane: POPG
  • John Stone (Thu Dec 16 2004 - 13:35:23 CST)
  • Vani Krishna (Wed Dec 15 2004 - 20:58:57 CST)
• vmd plugins / external programs
  • John Stone (Thu Jan 26 2006 - 13:54:06 CST)
  • Nuno R. L. Ferreira (Wed Jan 25 2006 - 04:11:09 CST)
• VMD plugins error
  • John Stone (Mon Aug 06 2007 - 23:59:51 CDT)
  • AustinSmall_at_comcast.net (Mon Aug 06 2007 - 22:18:52 CDT)
• VMD plugins not available without gui
  • Ashar Malik (Wed Oct 08 2014 - 04:13:33 CDT)
  • Björn Forsberg (Wed Oct 08 2014 - 03:37:23 CDT)
• VMD plus Phantom
  • Axel Kohlmeyer (Wed Aug 18 2010 - 14:13:53 CDT)
  • John Stone (Wed Aug 18 2010 - 13:11:03 CDT)
  • Christian Wohlschlager (Wed Aug 18 2010 - 11:04:42 CDT)
• vmd port on FreeBSD
  • Osmany Guirola Cruz (Mon Aug 23 2004 - 10:42:03 CDT)
  • Stephen Montgomery-Smith (Mon Aug 23 2004 - 09:49:31 CDT)
  • Osmany Guirola Cruz (Mon Aug 23 2004 - 09:36:35 CDT)
  • Stephen Montgomery-Smith (Sat Aug 21 2004 - 12:20:52 CDT)
• VMD print out
  • John Stone (Thu Aug 14 2003 - 22:15:42 CDT)
• Vmd Problem
  • John Stone (Thu Aug 11 2011 - 16:51:38 CDT)
  • John Stone (Thu Aug 11 2011 - 16:36:50 CDT)
  • Axel Kohlmeyer (Thu Aug 11 2011 - 16:35:56 CDT)
  • Sara baretller (Thu Aug 11 2011 - 16:42:32 CDT)
  • Sara baretller (Thu Aug 11 2011 - 15:49:08 CDT)
• Vmd problem in display of surface in Md movie ( Gromacs trajectory)
  • Josh Vermaas (Tue Aug 05 2014 - 10:59:23 CDT)
  • rama david (Tue Aug 05 2014 - 10:05:58 CDT)
• vmd problem: session ended
  • John Stone (Tue May 01 2007 - 12:50:19 CDT)
  • Hugh Ferrel Bowen (Thu Apr 26 2007 - 08:46:01 CDT)
• VMD problems on Linux Cinnamon Mint (Sarah)
  • John Stone (Sun Nov 27 2016 - 14:13:36 CST)
  • Madaras Erzsébet (Fri Nov 25 2016 - 02:12:59 CST)
  • John Stone (Thu Nov 24 2016 - 12:13:20 CST)
  • Madaras Erzsébet (Thu Nov 24 2016 - 10:07:13 CST)
  • John Stone (Thu Nov 24 2016 - 09:37:40 CST)
  • Madaras Erzsébet (Thu Nov 24 2016 - 06:42:09 CST)
  • John Stone (Wed Nov 23 2016 - 16:16:32 CST)
  • Madaras Erzsébet (Wed Nov 23 2016 - 16:00:00 CST)
• VMD process Windows
  • Endri Kastrati (Fri May 10 2019 - 00:01:22 CDT)
• VMD Programmer position available at TCBG / University of Illinois
  • Isralewitz, Barry (Thu Feb 15 2024 - 08:54:20 CST)
• VMD Programmer Position available at TCBG/UIUC
  • Tajkhorshid, Emad (Thu Jul 13 2023 - 09:20:35 CDT)
• VMD Prompt
  • Axel Kohlmeyer (Wed Sep 27 2006 - 13:20:46 CDT)
  • Jeffrey A Tibbitt (Wed Sep 27 2006 - 12:23:40 CDT)
• VMD Psfgen issue
  • Evgeny Bulat (Tue Jun 05 2012 - 12:55:53 CDT)
• VMD psfgen lonepair handling
  • Brian Radak (Tue Mar 26 2019 - 10:32:10 CDT)
  • Joao Ribeiro (Tue Mar 26 2019 - 08:33:21 CDT)
  • Brian Radak (Tue Mar 26 2019 - 08:28:21 CDT)
  • Aravinda Munasinghe (Mon Mar 25 2019 - 21:37:32 CDT)
• vmd psfgen problem with CHARMM
  • David F. Green (Thu Jul 15 2004 - 15:29:50 CDT)
  • Jerry Xu (Thu Jul 15 2004 - 17:00:27 CDT)
  • Bogdan Costescu (Thu Jul 15 2004 - 16:21:22 CDT)
  • Jerry Xu (Thu Jul 15 2004 - 14:50:51 CDT)
  • Bogdan Costescu (Thu Jul 15 2004 - 13:46:26 CDT)
  • Jerry Xu (Thu Jul 15 2004 - 13:03:30 CDT)
  • John Stone (Thu Jul 15 2004 - 12:50:25 CDT)
  • Bogdan Costescu (Thu Jul 15 2004 - 12:41:16 CDT)
  • John Stone (Thu Jul 15 2004 - 10:58:58 CDT)
  • Jerry Xu (Thu Jul 15 2004 - 10:28:15 CDT)
• vmd python availability on other platforms
  • John Stone (Wed Jul 17 2002 - 15:13:46 CDT)
  • jen ramus (Tue Jul 16 2002 - 22:31:07 CDT)
• VMD Python binaries available for testing
  • Justin Gullingsrud (Fri Dec 08 2000 - 14:08:55 CST)
• VMD python3 version
  • Josh Vermaas (Sat Sep 05 2020 - 14:29:29 CDT)
  • Francisco Ramos (Sat Sep 05 2020 - 12:04:17 CDT)
  • John Stone (Sat Sep 05 2020 - 08:26:20 CDT)
  • Pacho Ramos (Sat Sep 05 2020 - 07:16:15 CDT)
• VMD QMTool
  • JC Gumbart (Tue Nov 20 2012 - 00:09:17 CST)
  • Martin, Erik W (Mon Nov 19 2012 - 19:19:23 CST)
  • Bennion, Brian (Mon Nov 19 2012 - 14:51:36 CST)
  • Mayne, Christopher G (Mon Nov 19 2012 - 13:20:06 CST)
  • Martin, Erik W (Mon Nov 19 2012 - 11:42:19 CST)
  • Jan Saam (Thu Dec 20 2007 - 17:18:10 CST)
  • snoze pa (Thu Dec 20 2007 - 16:53:34 CST)
• VMD Quantum Chemistry Visualization
  • Axel Kohlmeyer (Mon Jul 21 2014 - 11:43:31 CDT)
  • Darrell Kuykendall (Mon Jul 21 2014 - 10:58:50 CDT)
  • Mayne, Christopher G (Mon Jul 21 2014 - 10:48:57 CDT)
  • Darrell Kuykendall (Mon Jul 21 2014 - 10:46:55 CDT)
  • John Stone (Mon Jul 21 2014 - 10:46:14 CDT)
  • Mayne, Christopher G (Mon Jul 21 2014 - 10:32:34 CDT)
  • Darrell Kuykendall (Sat Jul 19 2014 - 12:38:28 CDT)
• VMD QUESTION( Movie making )
  • John Stone (Mon Apr 09 2012 - 19:22:11 CDT)
  • Axel Kohlmeyer (Mon Apr 09 2012 - 17:45:21 CDT)
  • james Fernandez (Mon Apr 09 2012 - 16:49:21 CDT)
• VMD Question: How to build a polymer in VMD?
  • Gkourmpis, Thomas (Thu Apr 26 2012 - 03:51:45 CDT)
• vmd questions
  • John Stone (Wed Jan 03 2007 - 13:05:34 CST)
  • _at_huji.ac.il (Thu Dec 21 2006 - 05:09:59 CST)
• VMD questions about animating residue distance lines and contact maps
  • John Stone (Fri Aug 13 2010 - 13:03:59 CDT)
  • Axel Kohlmeyer (Fri Aug 13 2010 - 11:12:55 CDT)
  • Ian Stokes-Rees (Fri Aug 13 2010 - 10:30:15 CDT)
  • John Stone (Thu Aug 12 2010 - 16:43:46 CDT)
  • Ian Stokes-Rees (Thu Aug 12 2010 - 15:56:18 CDT)
• VMD quit unexpectedly on Mac
  • Gu, Wenze (Thu Mar 08 2018 - 15:33:45 CST)
  • John Stone (Thu Mar 08 2018 - 13:15:44 CST)
  • Gu, Wenze (Thu Mar 08 2018 - 12:42:19 CST)
• VMD quits
  • John Stone (Wed Jan 17 2007 - 12:59:16 CST)
  • Vishal Kopardé (Wed Jan 17 2007 - 12:50:07 CST)
• VMD read wrong charges if the atom type is longer than 5 characters in PSF file
  • Jiawei Xu (Thu Jan 10 2013 - 11:30:40 CST)
• VMD receives Segmentation Fault After NVIDIA Driver Update
  • Diego Gomes (Fri Jun 07 2024 - 11:15:23 CDT)
  • GIANG NGUYEN (Fri Jun 07 2024 - 04:15:10 CDT)
• VMD removing slightly misplaced atoms
  • Chang, Christopher (Tue Oct 04 2005 - 20:05:48 CDT)
  • Samuel Flores (Tue Oct 04 2005 - 19:47:06 CDT)
  • JC Gumbart (Tue Oct 04 2005 - 18:47:45 CDT)
  • Samuel Flores (Tue Oct 04 2005 - 18:32:25 CDT)
  • John Stone (Tue Oct 04 2005 - 14:27:18 CDT)
  • Samuel Flores (Tue Oct 04 2005 - 14:03:46 CDT)
• VMD rendering colors
  • Francesco Pietra (Sat Feb 15 2020 - 01:46:54 CST)
  • Robin Betz (Fri Feb 14 2020 - 13:36:23 CST)
  • Francesco Pietra (Fri Feb 14 2020 - 11:30:02 CST)
  • John Stone (Thu Feb 13 2020 - 12:13:49 CST)
  • Francesco Pietra (Thu Feb 13 2020 - 11:28:10 CST)
• VMD Representation
  • Sichun Yang (Sun Dec 29 2002 - 14:55:12 CST)
• VMD Representation (addition)
  • Justin Gullingsrud (Sun Dec 29 2002 - 19:22:03 CST)
  • Sichun Yang (Sun Dec 29 2002 - 15:16:32 CST)
• vmd residue position
  • Peter Freddolino (Thu Jul 26 2007 - 14:38:42 CDT)
  • John Stone (Thu Jul 26 2007 - 11:29:58 CDT)
  • snoze pa (Wed Jul 25 2007 - 14:29:51 CDT)
  • snoze pa (Wed Jul 25 2007 - 14:54:16 CDT)
• VMD RMSD Plot Selection
  • 김민재 (Mon Oct 21 2019 - 10:53:46 CDT)
• VMD RTX hardware accelerated ray tracing update!
  • John Stone (Thu Feb 21 2019 - 23:24:40 CST)
• VMD running on Mac OS Big Sur
  • Mortimer Hemmit (Wed Nov 18 2020 - 08:10:13 CST)
  • John Stone (Wed Nov 18 2020 - 00:27:17 CST)
  • Atreyo Pal (Tue Nov 17 2020 - 20:28:30 CST)
• VMD running slow
  • Axel Kohlmeyer (Mon Jul 25 2005 - 15:18:27 CDT)
  • Jindal Shah (Mon Jul 25 2005 - 14:02:11 CDT)
  • John Stone (Mon Jul 25 2005 - 13:06:13 CDT)
  • Jindal Shah (Mon Jul 25 2005 - 12:58:51 CDT)
  • John Stone (Mon Jul 25 2005 - 12:44:08 CDT)
  • Jindal Shah (Mon Jul 25 2005 - 12:20:58 CDT)
• VMD runs on the T3E!
  • Justin Gullingsrud (Sat Jun 24 2000 - 22:37:13 CDT)
• vmd runs slowly on vmware
  • MengJuei Hsieh (Mon Nov 04 2002 - 18:51:35 CST)
  • John Stone (Mon Nov 04 2002 - 18:31:54 CST)
  • jen ramus (Mon Nov 04 2002 - 17:05:14 CST)
• VMD runtime error
  • Peter Freddolino (Wed Aug 30 2006 - 07:06:21 CDT)
  • Lechuga, Javier (Wed Aug 30 2006 - 06:11:47 CDT)
• VMD scene information
  • John Stone (Thu Jan 11 2007 - 15:15:22 CST)
  • John Stone (Wed Jan 10 2007 - 20:01:32 CST)
  • Eric Peterson (Wed Jan 10 2007 - 17:19:39 CST)
  • John Stone (Wed Jan 10 2007 - 12:55:53 CST)
  • Eric Peterson (Wed Jan 10 2007 - 12:23:29 CST)
• VMD script
  • Marzieh Dehghan (Wed Sep 25 2013 - 07:30:05 CDT)
  • denilson_at_dqi.ufla.br (Wed Aug 28 2013 - 06:51:11 CDT)
  • denilson_at_dqi.ufla.br (Tue Aug 27 2013 - 13:43:52 CDT)
  • John Stone (Tue Aug 27 2013 - 11:29:58 CDT)
  • Axel Kohlmeyer (Sat Aug 24 2013 - 08:43:56 CDT)
  • Marzieh Dehghan (Sat Aug 24 2013 - 00:54:37 CDT)
  • Axel Kohlmeyer (Tue Mar 14 2006 - 08:20:53 CST)
  • andrea spitaleri (Tue Mar 14 2006 - 05:05:00 CST)
  • Axel Kohlmeyer (Mon Mar 13 2006 - 18:40:14 CST)
  • John Stone (Mon Mar 13 2006 - 10:17:25 CST)
  • andrea spitaleri (Mon Mar 13 2006 - 04:19:55 CST)
  • Mario Valle (Sun Mar 12 2006 - 00:43:26 CST)
  • John Stone (Fri Mar 10 2006 - 13:47:47 CST)
  • lily jin (Fri Mar 10 2006 - 13:41:03 CST)
• vmd script library
  • John Stone (Thu Sep 25 2003 - 14:31:54 CDT)
  • Karunesh Arora (Wed Sep 24 2003 - 14:08:35 CDT)
• VMD Script Library pages updated...
  • John Stone (Fri Oct 13 2000 - 14:39:38 CDT)
• vmd script running from command line
  • Giacomo Fiorin (Thu May 25 2017 - 09:16:25 CDT)
  • János Szövérfi (Thu May 25 2017 - 02:38:44 CDT)
• VMD script variable is
  • Josh Vermaas (Fri Nov 06 2015 - 10:07:48 CST)
  • dipak sanap (Fri Nov 06 2015 - 03:56:41 CST)
• VMD script: save coordinates problem
  • Axel Kohlmeyer (Mon Feb 01 2010 - 21:10:15 CST)
  • martin klvana (Mon Feb 01 2010 - 20:25:49 CST)
• VMD scripting
  • Peter Freddolino (Thu Oct 06 2005 - 14:43:15 CDT)
  • Shirley Li (Thu Oct 06 2005 - 14:37:50 CDT)
• VMD scripting (Thank you)
  • Shirley Li (Thu Oct 06 2005 - 15:55:17 CDT)
• VMD scripting questions
  • Axel Kohlmeyer (Fri Oct 29 2004 - 08:26:48 CDT)
  • Peter Bazeley (Fri Oct 29 2004 - 04:48:11 CDT)
• VMD scripting: Perform PBCwrap+fitframes on several dcd files
  • Filip Persson (Fri Jul 01 2011 - 08:03:26 CDT)
• VMD secondary structure Stride bug
  • Stefan Doerr (Fri Feb 13 2015 - 09:25:12 CST)
  • Morgan, Brittany (Fri Feb 13 2015 - 09:17:54 CST)
  • Stefan Doerr (Mon Feb 09 2015 - 10:53:10 CST)
• VMD Seg fault on startup in Fedora 26
  • John Stone (Tue Sep 05 2017 - 09:54:32 CDT)
  • sooraj achar (Sun Sep 03 2017 - 21:39:39 CDT)
  • John Stone (Sun Sep 03 2017 - 20:52:44 CDT)
  • sooraj achar (Sun Sep 03 2017 - 17:19:26 CDT)
• VMD Segfault Fedora 27
  • Bennion, Brian (Tue Mar 06 2018 - 15:01:16 CST)
  • John Stone (Tue Mar 06 2018 - 13:49:16 CST)
  • John Stone (Tue Mar 06 2018 - 14:28:46 CST)
  • Ivan Gregoretti (Tue Mar 06 2018 - 14:11:41 CST)
  • iamcool777able . (Tue Mar 06 2018 - 13:12:01 CST)
• VMD segmentation fault (core dumped)
  • John Stone (Mon Sep 16 2019 - 21:49:31 CDT)
  • Kliuchnikov, Evgenii (Mon Sep 16 2019 - 20:59:47 CDT)
  • John Stone (Mon Sep 16 2019 - 20:07:02 CDT)
  • Miro Astore (Mon Sep 16 2019 - 17:44:53 CDT)
  • Kliuchnikov, Evgenii (Mon Sep 16 2019 - 17:51:16 CDT)
  • Kliuchnikov, Evgenii (Mon Sep 16 2019 - 12:53:42 CDT)
  • John Stone (Thu Jan 29 2015 - 10:06:01 CST)
  • Matic Kisovec (Thu Jan 29 2015 - 05:51:02 CST)
  • Axel Kohlmeyer (Wed Jan 28 2015 - 10:52:58 CST)
  • Axel Kohlmeyer (Wed Jan 28 2015 - 10:44:10 CST)
  • John Stone (Wed Jan 28 2015 - 10:04:03 CST)
  • Matic Kisovec (Wed Jan 28 2015 - 09:53:11 CST)
• VMD selection options and local density maps
  • John Stone (Fri Jul 07 2006 - 13:49:27 CDT)
  • Urahata (Thu Jul 06 2006 - 14:39:22 CDT)
  • Urahata (Thu Jul 06 2006 - 13:06:53 CDT)
• VMD selection: change atom size across various frames
  • Axel Kohlmeyer (Mon Jul 02 2012 - 05:10:50 CDT)
  • Wolf Dapp (Mon Jul 02 2012 - 03:25:22 CDT)
  • Axel Kohlmeyer (Fri Jun 29 2012 - 10:26:27 CDT)
  • Wolf Dapp (Fri Jun 29 2012 - 08:57:04 CDT)
• VMD shows bad structure with 'line' type
  • John Stone (Fri Apr 02 2004 - 10:36:41 CST)
  • Arturas (Fri Apr 02 2004 - 06:27:38 CST)
• VMD shows there's a H-BOND between Carbon and Hydrogen?
  • Hovakim Grabski (Sat Jun 29 2013 - 05:47:02 CDT)
• vmd shuts itself down
  • Axel Kohlmeyer (Fri Jun 27 2008 - 09:23:12 CDT)
  • A D (Thu Jun 26 2008 - 19:20:58 CDT)
• VMD Slices
  • John Stone (Sat May 23 2020 - 02:21:15 CDT)
  • Amali Guruge (Wed May 06 2020 - 19:38:02 CDT)
• VMD slowdown on MacOS X 10.3.4
  • John Stone (Wed Jul 21 2004 - 10:31:29 CDT)
  • Lance Pickens (Tue Jul 20 2004 - 14:20:24 CDT)
  • John Stone (Tue Jul 20 2004 - 11:01:54 CDT)
  • Lance Pickens (Mon Jul 19 2004 - 20:29:31 CDT)
• VMD slows down at multiple windows
  • lam nguyen (Fri Nov 18 2011 - 13:42:12 CST)
  • lam nguyen (Fri Nov 18 2011 - 12:43:30 CST)
  • John Stone (Fri Nov 18 2011 - 11:18:44 CST)
  • Gianluca Interlandi (Thu Nov 17 2011 - 16:32:09 CST)
  • John Stone (Thu Nov 17 2011 - 14:13:49 CST)
  • lam nguyen (Thu Nov 17 2011 - 14:20:41 CST)
  • lam nguyen (Thu Nov 17 2011 - 14:01:51 CST)
  • John Stone (Thu Nov 17 2011 - 13:30:06 CST)
  • lam nguyen (Thu Nov 17 2011 - 14:05:18 CST)
  • lam nguyen (Thu Nov 17 2011 - 11:16:10 CST)
  • Tristan Croll (Thu Nov 17 2011 - 00:29:45 CST)
  • Peter C. Lai (Thu Nov 17 2011 - 00:35:13 CST)
  • lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
  • lam nguyen (Wed Nov 16 2011 - 22:30:03 CST)
  • Tristan Croll (Wed Nov 16 2011 - 19:26:21 CST)
  • John Stone (Wed Nov 16 2011 - 12:56:18 CST)
  • Ajasja LjubetiÄ� (Tue Nov 15 2011 - 03:08:28 CST)
  • lam nguyen (Mon Nov 14 2011 - 16:51:46 CST)
• vmd smooth trajectory distorted molecule
  • Chris Ing (Wed Aug 09 2017 - 15:18:25 CDT)
  • Ajasja LjubetiÄ� (Wed Aug 09 2017 - 14:43:31 CDT)
  • Albert (Wed Aug 09 2017 - 14:18:32 CDT)
  • Robin Betz (Wed Aug 09 2017 - 14:01:11 CDT)
  • Axel Kohlmeyer (Wed Aug 09 2017 - 13:00:15 CDT)
  • Albert (Wed Aug 09 2017 - 12:25:55 CDT)
  • Strahs, Dr. Daniel Bernard (Wed Aug 09 2017 - 10:27:39 CDT)
  • Axel Kohlmeyer (Wed Aug 09 2017 - 09:15:58 CDT)
  • Albert (Wed Aug 09 2017 - 09:00:59 CDT)
  • Axel Kohlmeyer (Wed Aug 09 2017 - 05:40:02 CDT)
  • Albert (Wed Aug 09 2017 - 03:59:33 CDT)
• vmd snapshots without display
  • Axel Kohlmeyer (Fri Feb 22 2008 - 11:41:19 CST)
  • John Stone (Fri Feb 22 2008 - 11:33:36 CST)
  • Thomas C. Bishop (Fri Feb 22 2008 - 10:59:50 CST)
• vmd solvate
  • Axel Kohlmeyer (Sun Nov 27 2011 - 15:00:26 CST)
  • Pavan Ghatty (Sun Nov 27 2011 - 13:56:17 CST)
• VMD Spaceball and Magellan/SpaceMouse support for Windows...
  • John Stone (Tue Nov 20 2001 - 15:02:06 CST)
• vmd startup sequence
  • Goedde, Chris (Fri Jun 08 2018 - 10:53:45 CDT)
  • Vermaas, Joshua (Fri Jun 08 2018 - 00:06:54 CDT)
  • Goedde, Chris (Thu Jun 07 2018 - 17:03:51 CDT)
• vmd stereo
  • John Stone (Mon Oct 30 2000 - 01:04:12 CST)
  • Brendan O'Malley (Sun Oct 29 2000 - 19:27:16 CST)
• VMD stereo (Win/SGI) and graphics accelerators...
  • John Stone (Wed Nov 29 2000 - 11:29:57 CST)
• VMD stereo for NVidia Quadro 5000?
  • John Stone (Mon Dec 19 2011 - 17:23:53 CST)
  • Alexander Balaeff (Mon Dec 19 2011 - 12:07:18 CST)
• VMD Stereo not work
  • Christian Wohlschlager (Thu Apr 26 2012 - 08:32:48 CDT)
• VMD stereo NVIDIA 3D vision with Composite
  • Vlad Cojocaru (Thu Jan 21 2016 - 17:20:22 CST)
  • John Stone (Thu Jan 21 2016 - 09:56:36 CST)
  • Vlad Cojocaru (Thu Jan 21 2016 - 03:02:49 CST)
  • John Stone (Wed Jan 20 2016 - 16:00:59 CST)
  • Vlad Cojocaru (Wed Jan 20 2016 - 11:45:30 CST)
• VMD stereo with Radeon 8500 and crystal eyes on Xig Xserver
  • Dr. Dan White (Fri Jul 12 2002 - 08:10:32 CDT)
• VMD stops furing loading of DCD trajectory
  • Vermaas, Joshua (Fri Mar 02 2018 - 18:15:11 CST)
  • Ashar Malik (Fri Mar 02 2018 - 17:53:43 CST)
  • Ashar Malik (Fri Mar 02 2018 - 17:25:43 CST)
  • Rose, Stuart Wallace (Fri Mar 02 2018 - 17:26:51 CST)
  • Rose, Stuart Wallace (Fri Mar 02 2018 - 16:07:07 CST)
• VMD STRIDE not functional after operating system upgrade
  • Vlad Cojocaru (Wed Nov 30 2011 - 11:15:15 CST)
  • John Stone (Wed Nov 30 2011 - 10:24:22 CST)
  • Vlad Cojocaru (Thu Nov 24 2011 - 08:50:40 CST)
• VMD support -- Out of town until Sept. 9th
  • John Stone (Wed Aug 27 2003 - 11:02:20 CDT)
• VMD Tachyon Render fails with new material
  • John Stone (Mon Aug 23 2021 - 13:52:41 CDT)
  • Jason Smith (Mon Aug 23 2021 - 12:44:15 CDT)
  • Vermaas, Josh (Mon Aug 23 2021 - 11:47:22 CDT)
  • Prateek Bansal (Mon Aug 23 2021 - 10:21:48 CDT)
• VMD Tcl Getting first index from residue number
  • Josh Vermaas (Wed Feb 11 2015 - 18:30:25 CST)
  • Bharat Sharma (Wed Feb 11 2015 - 12:14:21 CST)
• VMD TCL Script to save last frame of a trajectory using bash+tcl scripts
  • Giacomo Fiorin (Wed Feb 21 2018 - 13:07:40 CST)
  • Goedde, Chris (Wed Feb 21 2018 - 12:46:31 CST)
  • Dive, Aniruddha Mukund (Wed Feb 21 2018 - 12:18:02 CST)
  • John Stone (Tue Feb 20 2018 - 10:49:00 CST)
  • Dive, Aniruddha Mukund (Mon Feb 19 2018 - 16:37:33 CST)
• vmd tcl script writing issue
  • Sandip Mondal (Wed Apr 18 2018 - 13:18:42 CDT)
  • Chitrak Gupta (Wed Apr 18 2018 - 10:14:18 CDT)
  • Giacomo Fiorin (Wed Apr 18 2018 - 09:57:57 CDT)
  • Ashar Malik (Wed Apr 18 2018 - 09:53:53 CDT)
  • Sandip Mondal (Wed Apr 18 2018 - 09:29:43 CDT)
• Vmd tcl versions
  • John Stone (Mon Jun 18 2018 - 14:57:10 CDT)
  • Bennion, Brian (Mon Jun 18 2018 - 11:04:01 CDT)
• VMD testers for ATI+Linux automatic driver workaround...
  • John Stone (Thu Oct 20 2005 - 14:56:41 CDT)
• VMD text
  • John Stone (Fri Jul 28 2017 - 11:38:57 CDT)
  • Nuno Sousa Cerqueira (Fri Jul 28 2017 - 05:33:44 CDT)
• VMD Text Mode
  • McGuire, Kelly (Thu Mar 07 2019 - 23:38:20 CST)
  • Joshua Moore (Thu Mar 07 2019 - 23:33:35 CST)
  • Peter Freddolino (Thu Mar 07 2019 - 22:42:30 CST)
  • McGuire, Kelly (Thu Mar 07 2019 - 21:13:36 CST)
  • Peter Freddolino (Thu Mar 07 2019 - 20:58:58 CST)
  • Mike McCallum (Thu Mar 07 2019 - 19:19:59 CST)
  • McGuire, Kelly (Thu Mar 07 2019 - 19:12:34 CST)
  • Bennion, Brian (Thu Mar 07 2019 - 19:07:49 CST)
  • McGuire, Kelly (Thu Mar 07 2019 - 18:02:28 CST)
• VMD text mode commands
  • Cosseddu, Salvatore (Wed Jan 22 2014 - 16:06:13 CST)
  • Subbarao Kanchi (Wed Jan 22 2014 - 15:08:26 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 15:00:53 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 14:55:16 CST)
  • Subbarao Kanchi (Wed Jan 22 2014 - 14:21:08 CST)
  • Maxim Belkin (Wed Jan 22 2014 - 14:02:35 CST)
  • Subbarao Kanchi (Wed Jan 22 2014 - 13:29:55 CST)
• VMD text mode on MAC OS
  • Bharat Sharma (Fri Apr 10 2015 - 11:10:50 CDT)
  • Vasiliy Triandafilidi (Thu Apr 09 2015 - 16:41:13 CDT)
  • John Stone (Thu Apr 09 2015 - 09:58:10 CDT)
  • Vasiliy Triandafilidi (Thu Apr 09 2015 - 02:18:46 CDT)
  • Bharat Sharma (Wed Apr 08 2015 - 18:14:17 CDT)
• VMD text mode version
  • Axel Kohlmeyer (Fri Sep 14 2007 - 10:09:50 CDT)
  • Myunggi Yi (Fri Sep 14 2007 - 10:10:58 CDT)
• VMD text mode/unwrap
  • Axel Kohlmeyer (Tue Nov 02 2010 - 08:43:42 CDT)
  • Parisa Akhski (Mon Nov 01 2010 - 21:40:11 CDT)
  • Jérôme Hénin (Mon Nov 01 2010 - 05:12:59 CDT)
  • Parisa Akhski (Sun Oct 31 2010 - 19:53:47 CDT)
• vmd that works with ati/linux
  • John Stone (Thu Sep 29 2005 - 00:24:22 CDT)
  • Praedor Atrebates (Wed Sep 28 2005 - 16:43:14 CDT)
  • Praedor Atrebates (Wed Sep 28 2005 - 07:15:28 CDT)
  • John Stone (Tue Sep 27 2005 - 21:18:03 CDT)
• VMD Timeline Plug-in Selection in Hydrogen Bonds Calculations
  • Ebru Cetin (Fri May 28 2021 - 11:55:09 CDT)
• VMD Tk Console Columns
  • McGuire, Kelly (Thu Oct 11 2018 - 14:05:56 CDT)
  • Souvik Sinha (Thu Oct 11 2018 - 02:54:11 CDT)
  • McGuire, Kelly (Wed Oct 10 2018 - 19:14:04 CDT)
  • Giacomo Fiorin (Wed Oct 10 2018 - 15:19:05 CDT)
  • McGuire, Kelly (Wed Oct 10 2018 - 14:26:18 CDT)
• VMD TkConsole command
  • Sanjib Chowdhury (Thu Jan 08 2015 - 15:22:31 CST)
  • Sanjib Chowdhury (Thu Jan 08 2015 - 10:27:51 CST)
  • Sanjib Chowdhury (Wed Jan 07 2015 - 18:53:29 CST)
• VMD TkConsole font size
  • faride badalkhani (Tue Jun 28 2016 - 08:38:51 CDT)
  • Kotaro Tanaka (Tue Jun 28 2016 - 08:45:28 CDT)
  • Kotaro Tanaka (Tue Jun 28 2016 - 02:24:58 CDT)
• VMD too slow on my Linux system
  • preethi_at_bu.edu (Mon Aug 23 2004 - 09:34:38 CDT)
  • John Stone (Fri Aug 20 2004 - 14:06:23 CDT)
  • preethi_at_bu.edu (Thu Aug 19 2004 - 11:33:48 CDT)
• Vmd too slow on Suse10.x
  • John Stone (Mon May 05 2008 - 09:42:31 CDT)
  • Olaf Lenz (Mon May 05 2008 - 09:01:51 CDT)
  • cgji (Mon May 05 2008 - 08:20:47 CDT)
• vmd topotools 1.2
  • Axel Kohlmeyer (Thu Sep 29 2011 - 08:16:39 CDT)
  • oguz gurbulak (Thu Sep 29 2011 - 06:15:12 CDT)
• vmd topotools 1.2 error
  • Axel Kohlmeyer (Wed Sep 28 2011 - 10:01:43 CDT)
  • oguz gurbulak (Wed Sep 28 2011 - 09:05:17 CDT)
  • Axel Kohlmeyer (Wed Sep 28 2011 - 09:06:59 CDT)
  • oguz gurbulak (Wed Sep 28 2011 - 08:21:55 CDT)
  • oguz gurbulak (Wed Sep 28 2011 - 06:41:37 CDT)
• VMD Tracking VRPN
  • Christian Wohlschlager (Wed Aug 19 2009 - 02:01:49 CDT)
• VMD trajectory/structure/coordinate format
  • Olaf Lenz (Thu Oct 26 2006 - 07:28:52 CDT)
• VMD Tricky selection of protein water bridge (2 bridge waters)
  • Josh Vermaas (Mon Oct 05 2015 - 11:06:14 CDT)
  • Ashar Malik (Fri Oct 02 2015 - 18:17:31 CDT)
  • Yarrow Madrona (Fri Oct 02 2015 - 17:21:23 CDT)
• VMD tutorial for working with solid crystals
  • Axel Kohlmeyer (Tue Mar 25 2008 - 13:38:06 CDT)
  • Minhaj (Tue Mar 25 2008 - 03:33:19 CDT)
• VMD Tutorial Help
  • Joshua Adelman (Tue Feb 26 2013 - 10:48:28 CST)
  • John Stone (Tue Feb 26 2013 - 09:51:56 CST)
  • Nance, Sierra (Tue Feb 26 2013 - 09:07:41 CST)
• vmd ubuntu crash
  • John Stone (Thu Nov 01 2007 - 12:32:57 CDT)
  • jacopo.sgrignani_at_unifi.it (Thu Nov 01 2007 - 11:45:04 CDT)
• Vmd uninstallation and reinstallation
  • Basanta Acharya (Tue Oct 06 2020 - 21:43:56 CDT)
  • John Stone (Tue Oct 06 2020 - 10:39:57 CDT)
  • achchirangeebi (Sat Oct 03 2020 - 05:23:49 CDT)
• VMD Update Questions
  • John Stone (Tue Jun 12 2018 - 15:54:48 CDT)
  • McGuire, Kelly (Mon Jun 11 2018 - 15:07:12 CDT)
  • Axel Kohlmeyer (Mon Jun 11 2018 - 15:11:52 CDT)
  • John Stone (Mon Jun 11 2018 - 15:05:52 CDT)
  • McGuire, Kelly (Mon Jun 11 2018 - 14:48:55 CDT)
  • John Stone (Mon Jun 11 2018 - 14:08:48 CDT)
  • McGuire, Kelly (Mon Jun 11 2018 - 12:05:08 CDT)
  • John Stone (Mon Jun 11 2018 - 10:32:19 CDT)
  • McGuire, Kelly (Tue Jun 05 2018 - 12:11:42 CDT)
• VMD User Survey coming to your email inbox soon....
  • John Stone (Tue Aug 02 2011 - 10:19:24 CDT)
• VMD users that have Oculus DK2 headsets?
  • John Stone (Wed Jul 01 2015 - 11:06:44 CDT)
• VMD using CygWin?
  • Justin Gullingsrud (Wed Dec 20 2006 - 08:42:13 CST)
  • Jerome Henin (Tue Dec 19 2006 - 12:05:02 CST)
  • Christer Svanberg (Tue Dec 19 2006 - 07:29:15 CST)
• VMD version
  • John Stone (Wed Dec 09 2020 - 13:13:58 CST)
  • Tiglath Moradkhan (Wed Dec 09 2020 - 12:25:44 CST)
• vmd version 1.8
  • John Stone (Wed Dec 18 2002 - 14:46:11 CST)
  • Ioana Cozmuta (Wed Dec 18 2002 - 14:42:20 CST)
• VMD version 1.8.7 (LINUX OpenGL, CUDA) on UBUNTU 9.10
  • John Stone (Mon Jan 25 2010 - 16:32:25 CST)
  • Axel Kohlmeyer (Mon Jan 25 2010 - 16:08:58 CST)
  • A D (Mon Jan 25 2010 - 13:50:06 CST)
• vmd version for solaris 8
  • John Stone (Mon Jun 20 2005 - 10:00:25 CDT)
  • Justin (Mon Jun 20 2005 - 09:54:14 CDT)
  • Justin (Sat Jun 18 2005 - 11:19:32 CDT)
  • John Stone (Fri Jun 17 2005 - 16:33:05 CDT)
  • Justin (Fri Jun 17 2005 - 16:29:48 CDT)
• VMD very slow on DELL workstation with Quadro M4000
  • Vlad Cojocaru (Fri Jan 13 2017 - 03:50:09 CST)
  • John Stone (Thu Jan 12 2017 - 12:32:42 CST)
  • Vlad Cojocaru (Thu Jan 12 2017 - 09:02:31 CST)
  • Vlad Cojocaru (Thu Jan 12 2017 - 07:40:45 CST)
• VMD video-projection in 3D
  • John Stone (Mon Nov 16 2009 - 15:22:41 CST)
  • Nicolas Floquet (Mon Nov 16 2009 - 08:08:49 CST)
• vmd visualization and CMAP run problem
  • John Stone (Mon Jun 18 2007 - 16:59:19 CDT)
  • John Stone (Mon Jun 18 2007 - 16:47:26 CDT)
  • Moumita Maiti (Wed Jun 13 2007 - 04:05:25 CDT)
  • John Stone (Wed Jun 13 2007 - 03:04:49 CDT)
  • Moumita Maiti (Mon Jun 11 2007 - 00:52:23 CDT)
• vmd visualization problems with circular proteins
  • John Stone (Sun Apr 02 2006 - 18:13:06 CDT)
• VMD Visualizers and AutoPSF unusable on Mac BigSur and VMD1.9.4a55
  • John Stone (Fri May 06 2022 - 01:23:03 CDT)
  • Paula Schneider (Thu Feb 17 2022 - 14:27:31 CST)
• Vmd visualizing occupancy maps
  • John Stone (Tue Aug 13 2013 - 11:17:29 CDT)
  • Andrei Tudor (Tue Aug 13 2013 - 10:21:14 CDT)
• VMD Volmap ILS Error
  • Axel Kohlmeyer (Tue Feb 08 2011 - 16:25:00 CST)
  • larac_at_berkeley.edu (Tue Feb 08 2011 - 15:15:48 CST)
  • Axel Kohlmeyer (Mon Feb 07 2011 - 19:25:54 CST)
  • larac_at_berkeley.edu (Mon Feb 07 2011 - 18:23:21 CST)
• VMD Volmap ILS Error & Orient Function
  • Axel Kohlmeyer (Mon Feb 21 2011 - 15:17:52 CST)
  • larac_at_berkeley.edu (Mon Feb 21 2011 - 13:59:40 CST)
  • Axel Kohlmeyer (Sun Feb 20 2011 - 12:32:15 CST)
  • larac_at_berkeley.edu (Fri Feb 18 2011 - 12:10:06 CST)
  • Axel Kohlmeyer (Thu Feb 17 2011 - 13:54:49 CST)
  • larac_at_berkeley.edu (Thu Feb 17 2011 - 12:13:40 CST)
• Vmd vs QUANTA
  • Axel Kohlmeyer (Tue Jun 14 2011 - 04:55:11 CDT)
  • Sajad Ahrari (Tue Jun 14 2011 - 01:46:38 CDT)
  • Sajad Ahrari (Mon Jun 13 2011 - 23:59:04 CDT)
• VMD vs. BALLview?
  • Olaf Lenz (Tue Feb 01 2005 - 01:45:03 CST)
• VMD w/ amber parm7, segnames/chains etc...
  • John Stone (Wed Aug 22 2007 - 13:54:14 CDT)
  • Thomas C. Bishop (Wed Aug 22 2007 - 09:30:57 CDT)
• VMD warning: ignoring out of range atom #*** with id ***
  • Axel Kohlmeyer (Wed Dec 15 2021 - 09:28:58 CST)
  • Jiabin You (Wed Dec 15 2021 - 08:37:17 CST)
• VMD warnings
  • amirhossein taghavi (Fri Oct 24 2014 - 01:58:41 CDT)
• VMD water box vs. CHARMM
  • Yarrow Madrona (Wed Apr 17 2013 - 08:56:54 CDT)
  • Yarrow Madrona (Tue Apr 16 2013 - 18:21:20 CDT)
• VMD water protein anlysis
  • Roman Petrenko (Mon Feb 22 2010 - 17:28:19 CST)
  • John Stone (Mon Feb 22 2010 - 15:45:47 CST)
  • snoze pa (Mon Feb 22 2010 - 15:39:54 CST)
• VMD web/email outage most of Tuesday March 23rd
  • John Stone (Mon Mar 22 2021 - 22:45:54 CDT)
• VMD web/email outage today Tuesday 4/6
  • John Stone (Tue Apr 06 2021 - 12:57:55 CDT)
• VMD window doesn't show up
  • John Stone (Mon Apr 29 2019 - 21:17:56 CDT)
  • 대학ì›� 화학공학과 (Sun Apr 28 2019 - 19:47:40 CDT)
  • John Stone (Fri Apr 26 2019 - 12:01:25 CDT)
  • 대학ì›� 화학공학과 (Thu Apr 25 2019 - 20:00:39 CDT)
  • 대학ì›� 화학공학과 (Thu Apr 25 2019 - 19:08:55 CDT)
  • John Stone (Thu Apr 25 2019 - 07:46:04 CDT)
  • 대학ì›� 화학공학과 (Thu Apr 25 2019 - 06:44:52 CDT)
• VMD window transparent in Opensuse 11.1 ATI system
  • John Stone (Tue Jan 27 2009 - 11:56:00 CST)
  • Ramon Crehuet (Tue Jan 27 2009 - 11:35:15 CST)
  • Dan Wright (Tue Jan 20 2009 - 15:13:21 CST)
  • John Stone (Tue Jan 20 2009 - 15:15:14 CST)
  • John Stone (Tue Jan 20 2009 - 10:36:12 CST)
  • Axel Kohlmeyer (Tue Jan 20 2009 - 08:56:12 CST)
  • John Stone (Tue Jan 20 2009 - 08:44:57 CST)
  • Ramon Crehuet (Tue Jan 20 2009 - 06:09:27 CST)
• VMD window turning black with Nvidia 3d vision on ASUS monitor
  • John Stone (Thu Jul 14 2016 - 09:43:52 CDT)
  • Vlad Cojocaru (Thu Jul 14 2016 - 03:04:49 CDT)
  • Matic Kisovec (Thu Jul 14 2016 - 01:53:27 CDT)
  • Vlad Cojocaru (Wed Jul 13 2016 - 05:06:23 CDT)
• VMD with 3D TV
  • John Stone (Mon Apr 13 2015 - 16:14:14 CDT)
  • John Stone (Mon Feb 09 2015 - 11:26:12 CST)
  • John Stone (Thu Dec 18 2014 - 15:38:11 CST)
  • Kirby Vandivort (Thu Dec 18 2014 - 15:26:21 CST)
  • Smolin, Nikolai (Thu Dec 18 2014 - 15:13:43 CST)
  • John Stone (Thu Dec 18 2014 - 14:31:56 CST)
  • John Stone (Wed Dec 17 2014 - 11:27:22 CST)
  • John Stone (Wed Dec 17 2014 - 10:45:24 CST)
  • Smolin, Nikolai (Wed Dec 17 2014 - 10:34:53 CST)
  • John Stone (Wed Dec 17 2014 - 10:12:18 CST)
  • John Stone (Mon Dec 15 2014 - 08:25:00 CST)
  • Smolin, Nikolai (Fri Dec 12 2014 - 10:09:43 CST)
• vmd with 3d vision
  • John Stone (Fri Jan 07 2011 - 17:04:27 CST)
  • Axel Kohlmeyer (Fri Jan 07 2011 - 16:59:21 CST)
  • Axel Kohlmeyer (Fri Jan 07 2011 - 16:50:24 CST)
  • Yubo Fan (Fri Jan 07 2011 - 16:56:41 CST)
  • Yubo Fan (Fri Jan 07 2011 - 16:46:10 CST)
  • Axel Kohlmeyer (Fri Jan 07 2011 - 16:34:33 CST)
  • Axel Kohlmeyer (Fri Jan 07 2011 - 16:20:40 CST)
  • Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
  • Yubo Fan (Fri Jan 07 2011 - 15:35:49 CST)
• VMD with amber rst7 and parm7 files
  • Axel Kohlmeyer (Thu Jul 31 2008 - 09:02:29 CDT)
  • Alan (Thu Jul 31 2008 - 03:26:33 CDT)
• VMD with Babel and chemical2vmd
  • Kiraly Andras (Tue Apr 22 1997 - 13:58:15 CDT)
  • Stefan Grzybek (Tue Apr 22 1997 - 01:31:41 CDT)
  • Kiraly Andras (Mon Apr 21 1997 - 18:35:26 CDT)
• VMD with charmm program
  • John Stone (Sun Apr 30 2006 - 09:24:22 CDT)
  • mahmoud (Sun Apr 30 2006 - 04:59:52 CDT)
• VMD with Cuda 6.5, Mac OS X 10.10
  • John Stone (Mon Oct 27 2014 - 23:19:43 CDT)
  • McNutt, Nick (Mon Oct 27 2014 - 17:14:25 CDT)
• vmd with cuda1.0
  • John Stone (Mon Feb 16 2009 - 22:23:18 CST)
  • Roman Petrenko (Mon Feb 16 2009 - 22:07:30 CST)
  • Roman Petrenko (Mon Feb 16 2009 - 22:25:44 CST)
  • John Stone (Mon Feb 16 2009 - 21:56:04 CST)
  • Roman Petrenko (Mon Feb 16 2009 - 21:47:16 CST)
• VMD with EGL
  • Bruce D'Amora (Sun May 29 2016 - 07:34:56 CDT)
• VMD with Falcon
  • George Patargias (Thu Oct 16 2014 - 01:54:17 CDT)
  • George Patargias (Wed Oct 15 2014 - 10:34:41 CDT)
  • John Stone (Wed Oct 15 2014 - 10:38:47 CDT)
  • John Stone (Wed Oct 15 2014 - 10:22:21 CDT)
  • George Patargias (Wed Oct 15 2014 - 10:07:29 CDT)
• VMD with LAMMPS trjaectory - help?
  • jgrime_at_uchicago.edu (Thu Sep 29 2011 - 09:49:32 CDT)
  • Axel Kohlmeyer (Thu Sep 29 2011 - 10:08:37 CDT)
  • Axel Kohlmeyer (Wed Sep 28 2011 - 19:27:16 CDT)
  • jgrime_at_uchicago.edu (Wed Sep 28 2011 - 18:20:36 CDT)
• vmd with no x
  • Chang, Christopher (Thu Aug 11 2005 - 18:00:33 CDT)
  • John Stone (Thu Aug 11 2005 - 16:42:59 CDT)
  • Guanglei Cui (Thu Aug 11 2005 - 16:35:37 CDT)
• VMD with Python on MacOSX 10.7.5
  • Payne, Christina M (Fri Jul 26 2013 - 11:52:24 CDT)
• VMD with sensible phantom haptic device using VRPN
  • Xiaohu Hu (Wed Oct 04 2017 - 16:09:27 CDT)
  • John Stone (Tue Oct 03 2017 - 13:41:52 CDT)
  • Xiaohu Hu (Tue Oct 03 2017 - 13:44:51 CDT)
  • Xiaohu Hu (Mon Oct 02 2017 - 14:58:03 CDT)
  • Xiaohu Hu (Mon Oct 02 2017 - 13:30:36 CDT)
• VMD with stereo on RedHat Linux
  • John Stone (Wed Aug 07 2002 - 21:17:15 CDT)
  • John Stone (Wed Aug 07 2002 - 21:14:55 CDT)
  • Steve Chen (Wed Aug 07 2002 - 18:49:27 CDT)
• VMD with VRPN 7.33 and Phantom Omni on Windows 7
  • Sebastian Schneider (Fri Apr 08 2016 - 10:47:22 CDT)
• VMD with XTC trajectory and stride
  • John Stone (Tue Oct 13 2015 - 14:52:23 CDT)
  • Ebert Maximilian (Thu Oct 01 2015 - 11:56:13 CDT)
• VMD within emacs
  • Cosseddu, Salvatore (Thu Mar 06 2014 - 11:17:53 CST)
  • Cosseddu, Salvatore (Thu Mar 06 2014 - 11:21:28 CST)
• vmd without OpenGL window
  • Eric Smoll (Wed Aug 20 2014 - 13:41:57 CDT)
  • Maxim Belkin (Wed Aug 20 2014 - 13:46:58 CDT)
• vmd won't display in lines
  • John Stone (Fri Dec 18 2009 - 16:32:12 CST)
  • Gard Nelson (Fri Dec 18 2009 - 16:17:45 CST)
• VMD won't make mpg out of my trajectory
  • John Stone (Wed Sep 20 2006 - 15:17:46 CDT)
  • Axel Kohlmeyer (Wed Sep 20 2006 - 15:12:13 CDT)
  • Kenley Barrett (Wed Sep 20 2006 - 14:48:59 CDT)
  • Axel Kohlmeyer (Wed Sep 20 2006 - 14:00:56 CDT)
  • John Stone (Wed Sep 20 2006 - 13:47:03 CDT)
  • Kenley Barrett (Wed Sep 20 2006 - 13:38:19 CDT)
• VMD working on Linux i386 w/ Mesa & Nvidia
  • doug irvine (Wed Nov 17 1999 - 14:19:21 CST)
• VMD workshop material
  • Andrew Dalke (Tue Feb 18 1997 - 17:43:13 CST)
• VMD write pdb error
  • Josh Vermaas (Wed Sep 09 2020 - 13:40:17 CDT)
  • Arthur Pereira da Fonseca (Wed Sep 09 2020 - 12:16:46 CDT)
• VMD XRequest errors
  • John Stone (Fri Aug 27 2010 - 14:23:38 CDT)
  • Richard Cook (Thu Aug 26 2010 - 17:17:22 CDT)
  • John Stone (Wed Jul 28 2010 - 21:54:21 CDT)
  • Richard Cook (Wed Jul 28 2010 - 21:25:21 CDT)
  • John Stone (Wed Jul 28 2010 - 21:02:30 CDT)
  • Richard Cook (Wed Jul 28 2010 - 20:15:01 CDT)
  • Bennion, Brian (Wed Jul 28 2010 - 17:24:33 CDT)
  • Richard Cook (Wed Jul 28 2010 - 16:39:08 CDT)
  • John Stone (Tue Jul 27 2010 - 23:58:01 CDT)
  • Richard Cook (Fri Jul 23 2010 - 18:47:49 CDT)
• VMD XYZ plugin: add support for reading velocities
  • Christian Leitold (Thu Jun 09 2016 - 11:12:10 CDT)
  • Axel Kohlmeyer (Thu Jun 09 2016 - 10:45:58 CDT)
  • Christian Leitold (Thu Jun 09 2016 - 10:06:55 CDT)
• VMD's NAMD GUI
  • Douglas Houston (Sun Dec 29 2013 - 03:39:02 CST)
  • Axel Kohlmeyer (Sun Dec 29 2013 - 03:47:35 CST)
  • Axel Kohlmeyer (Wed Dec 25 2013 - 02:58:43 CST)
  • Douglas Houston (Tue Dec 24 2013 - 06:13:24 CST)
• VMD's Python/Tcl - importing libraries
  • John Stone (Fri Apr 21 2006 - 11:48:07 CDT)
  • ziemys_at_ecr6.ohio-state.edu (Fri Apr 21 2006 - 10:45:08 CDT)
• VMD's superposition algorithm
  • Víctor (Thu Jul 19 2012 - 07:41:45 CDT)
  • Axel Kohlmeyer (Thu Jul 19 2012 - 07:28:09 CDT)
  • Víctor (Thu Jul 19 2012 - 07:17:54 CDT)
  • Axel Kohlmeyer (Thu Jul 19 2012 - 06:55:12 CDT)
  • Víctor (Thu Jul 19 2012 - 05:06:29 CDT)
• VMD, CAVEs and pointing devices
  • John Stone (Wed Sep 17 2003 - 13:53:56 CDT)
  • Philip Fowler (Wed Sep 17 2003 - 12:05:07 CDT)
• vmd, linux & dri
  • John Stone (Tue Feb 13 2001 - 10:06:46 CST)
  • Angelo R. Rossi (Tue Feb 13 2001 - 08:20:42 CST)
  • John Stone (Fri Jan 12 2001 - 17:44:29 CST)
  • Robert Milius (Fri Jan 12 2001 - 16:41:52 CST)
• vmd, linux & dri (fwd)
  • Justin Gullingsrud (Fri Jan 12 2001 - 20:57:12 CST)
  • Bob Milius (Fri Jan 12 2001 - 19:39:34 CST)
  • Bob Milius (Fri Jan 12 2001 - 19:29:20 CST)
• VMD, MultiSeq, STAMP
  • John Stone (Mon Aug 31 2009 - 14:37:44 CDT)
  • Kirby Vandivort (Mon Aug 31 2009 - 14:25:30 CDT)
  • Damian Loska (Sun Aug 30 2009 - 11:42:14 CDT)
• VMD, NAMD and Interactive Essential Dynamics (IED)
  • Axel Kohlmeyer (Mon Mar 21 2005 - 12:22:52 CST)
  • Glenn Johnson (Mon Mar 21 2005 - 12:08:26 CST)
  • Glenn Johnson (Mon Mar 21 2005 - 10:39:00 CST)
  • Axel Kohlmeyer (Wed Feb 23 2005 - 14:29:22 CST)
  • Justin Gullingsrud (Tue Feb 22 2005 - 13:22:26 CST)
  • Philip Fowler (Tue Feb 22 2005 - 10:06:55 CST)
• VMD, NAMDenergy & AMBER parameters
  • Irene Newhouse (Tue Feb 05 2008 - 12:46:40 CST)
  • Peter Freddolino (Tue Feb 05 2008 - 06:51:37 CST)
  • Irene Newhouse (Mon Feb 04 2008 - 17:23:37 CST)
• VMD, Paratool
  • JC Gumbart (Sat Apr 13 2013 - 08:08:17 CDT)
  • ³Âº½Ñà (Fri Apr 12 2013 - 15:40:20 CDT)
• VMD, Tachyon and depth of field
  • John Stone (Sat Feb 06 2010 - 15:01:42 CST)
  • John Stone (Sat Feb 06 2010 - 11:15:34 CST)
  • Marc Baaden (Sat Feb 06 2010 - 10:07:07 CST)
• VMD, VRPN, Phantom Desktop
  • John Stone (Tue Jan 13 2009 - 16:36:20 CST)
  • Nicholas Labello (Fri Dec 12 2008 - 09:43:19 CST)
• VMD- Ra Measurement
  • Saurav Goel (Sun May 01 2011 - 19:43:28 CDT)
• vmd-1.7.1 installation problems
  • John Stone (Wed Jan 23 2002 - 09:47:04 CST)
  • Wuwei Liang (Wed Jan 23 2002 - 12:41:52 CST)
• VMD-1.8.2 OpenGL Shader Extns. and Chromium
  • John Stone (Wed May 19 2004 - 23:47:05 CDT)
  • Stewart Dickson (Wed May 19 2004 - 15:44:24 CDT)
• vmd-1.8.2, Spaceball and FC2
  • John Stone (Mon Jun 07 2004 - 14:21:20 CDT)
  • Cesar Delgado (Mon Jun 07 2004 - 13:54:36 CDT)
• VMD-1.8.3 installation erRor
  • griadi_at_utalca.cl (Wed Aug 10 2005 - 18:29:12 CDT)
  • John Stone (Wed Aug 10 2005 - 14:22:15 CDT)
  • griadi_at_utalca.cl (Wed Aug 10 2005 - 14:07:57 CDT)
• vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy
  • Marc Baaden (Tue Feb 14 2006 - 01:27:51 CST)
  • Stéphane Teletchéa (Mon Feb 13 2006 - 04:13:25 CST)
  • John Stone (Fri Feb 10 2006 - 12:45:19 CST)
  • Bogdan Costescu (Fri Feb 10 2006 - 12:05:03 CST)
  • Stéphane Teletchéa (Fri Feb 10 2006 - 08:18:21 CST)
  • Pietro Amodeo (Fri Feb 10 2006 - 05:01:22 CST)
  • Sabuj Pattanayek (Thu Feb 09 2006 - 13:58:18 CST)
  • John Stone (Thu Feb 09 2006 - 13:30:59 CST)
  • Bogdan Costescu (Thu Feb 09 2006 - 11:43:52 CST)
  • John Stone (Thu Feb 09 2006 - 11:08:19 CST)
  • Bogdan Costescu (Thu Feb 09 2006 - 10:51:55 CST)
  • John Stone (Thu Feb 09 2006 - 09:38:08 CST)
  • Axel Kohlmeyer (Thu Feb 09 2006 - 06:16:54 CST)
  • Tru Huynh (Thu Feb 09 2006 - 09:13:52 CST)
  • Dan Wright (Wed Feb 08 2006 - 22:26:53 CST)
  • John Stone (Wed Feb 08 2006 - 17:48:25 CST)
  • Tru Huynh (Tue Feb 07 2006 - 08:16:05 CST)
• VMD-1.8.5: GLSL & NVidia troubles + fixed previous Spaceball problem
  • Axel Kohlmeyer (Sun Feb 11 2007 - 12:51:06 CST)
  • Pietro Amodeo (Sun Feb 11 2007 - 06:22:46 CST)
  • John Stone (Sat Feb 10 2007 - 23:58:18 CST)
  • Pietro Amodeo (Sat Feb 10 2007 - 05:59:42 CST)
• vmd-1.8.6 fails with python-2.5
  • Jeffrey Gardner (Fri Aug 24 2007 - 17:20:51 CDT)
• vmd-1.8.7 building from source ->few plugins "package could not be loaded"
  • John Stone (Wed Dec 09 2009 - 13:57:18 CST)
  • Tru Huynh (Wed Dec 09 2009 - 13:53:18 CST)
  • Tru Huynh (Wed Dec 09 2009 - 13:37:45 CST)
  • John Stone (Tue Dec 08 2009 - 14:44:06 CST)
  • Tru Huynh (Tue Dec 08 2009 - 14:22:23 CST)
  • John Stone (Mon Dec 07 2009 - 14:43:51 CST)
  • Tru Huynh (Mon Dec 07 2009 - 09:40:30 CST)
• vmd-1.83's crash upon pdb load
  • John Stone (Thu Dec 01 2005 - 15:45:26 CST)
  • Martin Grana (Tue Nov 29 2005 - 06:25:57 CST)
• vmd-1.8a10; psfgen; AMBER-trajectories; strange bondlengths
  • John Stone (Wed Jun 12 2002 - 01:18:34 CDT)
  • Johannes von Langen (Tue Jun 11 2002 - 03:17:31 CDT)
• VMD-1.9.1 and TC/TK-8.6 break analysis g(r) and IR Spectral Density Calculator
  • John Stone (Thu Feb 28 2013 - 15:13:10 CST)
  • John Stone (Wed Feb 27 2013 - 17:54:18 CST)
  • Benj FitzPatrick (Wed Feb 27 2013 - 17:32:20 CST)
  • John Stone (Tue Feb 26 2013 - 16:04:09 CST)
  • Benj FitzPatrick (Thu Jan 17 2013 - 14:47:11 CST)
• vmd-1.9.1 broken after upgrade to Ubuntu 13.10
  • John Stone (Mon Dec 09 2013 - 09:19:01 CST)
  • Josh Vermaas (Sun Dec 08 2013 - 15:01:36 CST)
  • Robert Wohlhueter (Sun Dec 08 2013 - 12:00:24 CST)
  • denilson_at_dqi.ufla.br (Wed Nov 27 2013 - 11:52:28 CST)
  • Robert Wohlhueter (Wed Nov 27 2013 - 10:00:38 CST)
  • Robert Wohlhueter (Wed Nov 27 2013 - 09:12:57 CST)
  • aramice Malkhasian (Wed Nov 27 2013 - 00:53:30 CST)
  • John Stone (Tue Nov 26 2013 - 19:08:09 CST)
  • Josh Vermaas (Tue Nov 26 2013 - 18:42:09 CST)
  • John Stone (Tue Nov 26 2013 - 17:03:22 CST)
  • Robert Wohlhueter (Tue Nov 26 2013 - 16:15:53 CST)
• vmd-1.9.1 linux installation problem
  • Josh Vermaas (Mon Jul 21 2014 - 12:15:52 CDT)
  • Arash Azari (Mon Jul 21 2014 - 12:36:30 CDT)
  • Weiping Liu (Mon Jul 21 2014 - 11:48:16 CDT)
  • Weiping Liu (Mon Jul 21 2014 - 11:32:08 CDT)
  • Josh Vermaas (Mon Jul 21 2014 - 08:13:35 CDT)
  • Bashir Fotouhi (Mon Jul 21 2014 - 02:23:59 CDT)
  • Weiping Liu (Sun Jul 20 2014 - 20:43:54 CDT)
• vmd-1.9.3 problem with nvidia driver 375
  • Vermaas, Joshua (Mon Jun 12 2017 - 10:36:14 CDT)
  • Robert Wohlhueter (Sat Jun 10 2017 - 21:06:04 CDT)
• vmd-1: Colors in Representations Tab
  • Josh Vermaas (Tue Jan 20 2015 - 17:02:57 CST)
  • Akshata Rudrapatna (Tue Jan 20 2015 - 16:09:28 CST)
• vmd-1: Creating movies in VMD
  • Axel Kohlmeyer (Tue Jan 20 2015 - 16:19:18 CST)
  • Akshata Rudrapatna (Tue Jan 20 2015 - 16:08:31 CST)
  • Akshata Rudrapatna (Tue Jan 20 2015 - 15:53:44 CST)
  • Axel Kohlmeyer (Tue Jan 20 2015 - 15:57:08 CST)
  • Axel Kohlmeyer (Tue Jan 20 2015 - 15:26:13 CST)
  • Akshata Rudrapatna (Tue Jan 20 2015 - 14:57:14 CST)
• vmd-1:how to merge two proteins (receptor & ligand)
  • Axel Kohlmeyer (Thu May 03 2007 - 16:01:46 CDT)
  • kong.winter (Thu May 03 2007 - 16:06:20 CDT)
• VMD-Cones and Povray rendering
  • John Stone (Fri Mar 05 2010 - 08:58:23 CST)
  • Olaf Lenz (Fri Mar 05 2010 - 02:31:11 CST)
• VMD-CUDA crash on Mac OSX 10.8.2
  • James Conway (Thu Dec 06 2012 - 12:35:11 CST)
• vmd-density-profile
  • Toni Giorgino (Mon Jan 09 2012 - 05:30:22 CST)
  • Axel Kohlmeyer (Sat Jan 07 2012 - 10:23:44 CST)
  • subrata paul (Sat Jan 07 2012 - 07:11:26 CST)
• VMD-I:
  • nataliaperez_at_infomed.sld.cu (Mon Jun 27 2011 - 11:21:02 CDT)
• vmd-I: Creating PSF from PDB files
  • Shehan Parmar (Sun Oct 22 2017 - 17:57:00 CDT)
• vmd-I: Fatal Error: Unable to Open CHARMM Parameter File
  • Akshata Rudrapatna (Tue Feb 03 2015 - 08:26:31 CST)
  • Norman Geist (Tue Feb 03 2015 - 06:17:36 CST)
  • Akshata Rudrapatna (Mon Feb 02 2015 - 19:44:56 CST)
• vmd-I: remove water, protein from a dcd
  • Yarrow Madrona (Fri Mar 29 2013 - 17:19:18 CDT)
  • John Stone (Thu Mar 28 2013 - 20:50:42 CDT)
  • Mert Gür (Thu Mar 28 2013 - 20:50:23 CDT)
  • Yarrow Madrona (Thu Mar 28 2013 - 19:36:48 CDT)
  • Yarrow Madrona (Thu Mar 28 2013 - 19:34:23 CDT)
  • Mert Gür (Thu Mar 28 2013 - 18:27:13 CDT)
  • John Stone (Thu Mar 28 2013 - 18:07:01 CDT)
  • Yarrow Madrona (Thu Mar 28 2013 - 17:46:17 CDT)
  • Axel Kohlmeyer (Thu Mar 28 2013 - 17:42:06 CDT)
  • Yarrow Madrona (Thu Mar 28 2013 - 15:45:02 CDT)
• VMD-I: rsmd calculation
  • Axel Kohlmeyer (Tue Jun 28 2011 - 09:53:26 CDT)
  • nataliaperez_at_infomed.sld.cu (Mon Jun 27 2011 - 14:57:41 CDT)
• vmd-I: Using the MergeMultiFramesPDB code
  • John Stone (Fri Apr 10 2015 - 01:55:52 CDT)
  • Akshata Rudrapatna (Sat Mar 21 2015 - 17:06:42 CDT)
• vmd-I:Hbonds
  • John Stone (Thu Nov 11 2010 - 11:07:55 CST)
  • nataliaperez_at_infomed.sld.cu (Thu Nov 11 2010 - 10:53:57 CST)
  • nataliaperez_at_infomed.sld.cu (Thu Nov 11 2010 - 08:59:11 CST)
• vmd-l : VMD1.8.5 : multiseq db
  • l.spitzer_at_fr.fournierpharma.com (Tue Aug 29 2006 - 11:18:08 CDT)
  • Elijah Roberts (Tue Aug 29 2006 - 10:45:09 CDT)
  • l.spitzer_at_fr.fournierpharma.com (Tue Aug 29 2006 - 09:48:11 CDT)
  • Elijah Roberts (Tue Aug 29 2006 - 09:08:40 CDT)
  • l.spitzer_at_fr.fournierpharma.com (Tue Aug 29 2006 - 03:29:44 CDT)
• vmd-l digest V1 #1086
  • Ibrahim Moustafa (Wed Jun 11 2008 - 11:27:48 CDT)
• vmd-l digest V1 #1583
  • Nicholas Musolino (Sun Apr 18 2010 - 20:14:36 CDT)
• vmd-l digest V1 #2344
  • Amit Jaiswal (Sun Mar 24 2013 - 02:26:04 CDT)
• vmd-l digest V1 #4449
  • tatyanasysoeva_at_gmail.com (Tue Oct 12 2021 - 19:48:30 CDT)
• vmd-l digest V1 #514
  • Fred de Lamotte (Sat Apr 29 2006 - 08:43:56 CDT)
• vmd-l digest V1 #579
  • vmd-l digest (Mon Jul 17 2006 - 15:51:45 CDT)
  • Christoph Weber (Thu Jul 20 2006 - 17:19:08 CDT)
  • Mark Harder (Wed Jul 19 2006 - 21:09:08 CDT)
• VMD-L digests available
  • John Stone (Wed Mar 17 2004 - 18:01:56 CST)
• VMD-L downtime Feb 18/19...
  • John Stone (Mon Feb 16 2004 - 15:21:14 CST)
• vmd-l DynamicBond between two given type of atoms
  • John Stone (Mon Dec 19 2011 - 17:21:29 CST)
  • Salvatore Mario Cosseddu (Mon Dec 19 2011 - 15:16:03 CST)
  • PaweÅ‚ KÄ™dzierski (Mon Dec 19 2011 - 14:42:33 CST)
  • Salvatore Mario Cosseddu (Mon Dec 19 2011 - 14:27:53 CST)
  • Axel Kohlmeyer (Mon Dec 19 2011 - 12:08:37 CST)
  • Salvatore Mario Cosseddu (Mon Dec 19 2011 - 10:44:17 CST)
• VMD-L Entropy calculation in VMD
  • Giacomo Fiorin (Sat May 09 2020 - 18:12:29 CDT)
  • varun dewaker (Sat May 09 2020 - 12:31:03 CDT)
• vmd-l incoming mails become Spam
  • Ashar Malik (Fri Oct 24 2014 - 07:00:24 CDT)
  • Ashar Malik (Fri Oct 24 2014 - 07:04:41 CDT)
  • Maxim Belkin (Fri Oct 24 2014 - 06:56:54 CDT)
  • Axel Kohlmeyer (Fri Oct 24 2014 - 06:48:24 CDT)
  • Ashar Malik (Fri Oct 24 2014 - 06:20:43 CDT)
• VMD-L Mailing List: Velocity autocorrelation and spatial distribution functions
  • David Smith (Sun Mar 10 2013 - 14:33:17 CDT)
• VMD-L membership pruning, more anti-spam measures..
  • John Stone (Sat Jan 05 2008 - 00:26:40 CST)
• VMD-L moderation fully automatic from now on....
  • John Stone (Mon Jul 30 2007 - 14:46:47 CDT)
• VMD-L post spam blocking, rescued messages from the last 30 days...
  • John Stone (Fri Jan 04 2008 - 12:33:38 CST)
• VMD-L Regarding Zinc parameters
  • varun dewaker (Sat May 09 2020 - 12:38:00 CDT)
• VMD-L: how to rotate the molecule so the long axis will be aligned to Z
  • Margaret Shun Cheung (Wed Apr 12 2006 - 13:30:05 CDT)
  • Peter Freddolino (Wed Apr 12 2006 - 12:16:30 CDT)
  • Margaret Shun Cheung (Wed Apr 12 2006 - 11:48:45 CDT)
  • Peter Freddolino (Wed Apr 12 2006 - 11:37:27 CDT)
  • Margaret Shun Cheung (Tue Apr 11 2006 - 20:13:21 CDT)
• VMD-L: how to select water molecules between two residues in a trajectory.
  • Axel Kohlmeyer (Mon Apr 17 2006 - 11:33:38 CDT)
  • John Stone (Mon Apr 17 2006 - 11:33:19 CDT)
  • Margaret Shun Cheung (Mon Apr 17 2006 - 11:16:18 CDT)
  • Axel Kohlmeyer (Mon Apr 17 2006 - 10:50:38 CDT)
  • Margaret Shun Cheung (Mon Apr 17 2006 - 09:38:54 CDT)
  • Axel Kohlmeyer (Sat Apr 15 2006 - 20:31:11 CDT)
  • Margaret Shun Cheung (Sat Apr 15 2006 - 19:15:26 CDT)
  • John Stone (Sat Apr 15 2006 - 17:17:16 CDT)
  • Margaret Shun Cheung (Sat Apr 15 2006 - 16:54:25 CDT)
• vmd-l@ks.uiuc.edu
  • Raman Preet Singh (Sun Nov 27 2022 - 08:01:01 CST)
  • angad sharma (Fri Nov 25 2022 - 00:33:20 CST)
  • angad sharma (Tue Nov 22 2022 - 05:06:23 CST)
• vmd-lQ?= gamess plugin error when using symmetry operations
  • John Stone (Thu May 25 2006 - 14:17:20 CDT)
• VMD-Main window doesn't load after change in .vmdrc
  • Grant Schauer (Mon Jun 04 2007 - 22:20:30 CDT)
  • Axel Kohlmeyer (Mon Jun 04 2007 - 20:12:25 CDT)
  • John Stone (Mon Jun 04 2007 - 20:59:37 CDT)
  • Grant Schauer (Mon Jun 04 2007 - 20:22:55 CDT)
• VMD-NAMD and PDB element column
  • Francesco Pietra (Sat Dec 12 2015 - 09:09:55 CST)
• vmd-read data from lammps
  • Axel Kohlmeyer (Thu May 07 2009 - 21:22:51 CDT)
  • H Q (Thu May 07 2009 - 20:26:53 CDT)
• vmd-rmsd-color-tool
  • Axel Kohlmeyer (Fri Aug 01 2008 - 09:27:35 CDT)
  • Bernhard Knapp (Fri Aug 01 2008 - 02:27:48 CDT)
• vmd-vrpn in windowsXP
  • John Stone (Tue Jul 26 2005 - 09:57:35 CDT)
  • leepersonpp (Tue Jul 26 2005 - 05:25:24 CDT)
• VMD-VRPN-PHANTOM problem ?
  • Marc Baaden (Thu Sep 02 2004 - 09:59:58 CDT)
  • John Stone (Thu Sep 02 2004 - 09:50:23 CDT)
  • Marc Baaden (Thu Sep 02 2004 - 05:00:44 CDT)
  • John Stone (Thu Sep 02 2004 - 01:32:22 CDT)
  • Gaurav Sharma (Thu Sep 02 2004 - 02:47:24 CDT)
• vmd-xplor
  • John Stone (Wed Oct 12 2005 - 17:08:14 CDT)
  • griadi_at_utalca.cl (Tue Oct 11 2005 - 18:45:46 CDT)
• vmd-xplor and noe call
  • John Stone (Thu Dec 15 2005 - 09:51:52 CST)
  • andrea spitaleri (Thu Dec 15 2005 - 05:16:58 CST)
• vmd-xplor and noe call ]
  • andrea spitaleri (Thu Dec 15 2005 - 10:13:30 CST)
• vmd-xplor installation
  • Charles_at_Schwieters.org (Thu Dec 14 2006 - 18:56:28 CST)
  • Lei Shi (Thu Dec 14 2006 - 18:16:38 CST)
• VMD-Xplor interface problem
  • Vitaly Vostrikov (Mon Jan 04 2010 - 12:04:14 CST)
  • John Stone (Sun Jan 03 2010 - 21:38:24 CST)
  • Vitaly Vostrikov (Sun Jan 03 2010 - 20:18:01 CST)
• VMD-Xplor problem
  • Vitaly Vostrikov (Tue Jan 05 2010 - 22:22:12 CST)
• VMD. PSF and lone pairs
  • David Hardy (Thu Feb 11 2021 - 08:49:53 CST)
  • José Villalaín (Thu Feb 11 2021 - 08:23:50 CST)
• vmd.ps
  • ³Ì²ýÀû (Sun Sep 12 2010 - 11:14:49 CDT)
• VMD.RC Question
  • John Stone (Wed Mar 02 2011 - 12:45:53 CST)
  • Axel Kohlmeyer (Tue Mar 01 2011 - 16:51:49 CST)
  • Phelan Jr., Frederick R. Dr. (Tue Mar 01 2011 - 14:33:45 CST)
• VMD/Eye3d/Linux/Nvidia question
  • John Stone (Fri Feb 01 2002 - 16:23:25 CST)
  • Troy Wymore (Fri Feb 01 2002 - 15:58:56 CST)
• vmd/gaussian cubes
  • Axel Kohlmeyer (Fri Mar 02 2007 - 11:48:20 CST)
  • Adrian Roitberg (Fri Mar 02 2007 - 10:11:08 CST)
• VMD/IMD problems on MacOS Yosemite
  • John Stone (Fri Dec 12 2014 - 16:03:07 CST)
  • John Stone (Fri Dec 12 2014 - 10:27:32 CST)
  • Dimitrov, Alex (Fri Dec 12 2014 - 00:38:53 CST)
• VMD/NAMD at SC2007
  • John Stone (Wed Nov 07 2007 - 21:41:57 CST)
• vmd/namd connection in linux
  • Justin Gullingsrud (Thu Jun 15 2000 - 17:05:51 CDT)
  • Kim Foster (Thu Jun 15 2000 - 15:58:08 CDT)
• VMD/NAMD downloads, web site status
  • John Stone (Fri Jun 25 2004 - 17:16:37 CDT)
• VMD/QMTool generating multiple outputs
  • PaweÅ‚ KÄ™dzierski (Wed Sep 22 2021 - 04:56:10 CDT)
  • Daniel Fellner (Wed Sep 22 2021 - 03:02:06 CDT)
• vmd/vista32b/zalman M220 stereo?
  • Michael Galloway (Mon Jun 23 2008 - 10:17:32 CDT)
  • Sabuj Pattanayek (Fri Jun 20 2008 - 19:18:59 CDT)
  • Michael Galloway (Fri Jun 20 2008 - 16:03:46 CDT)
• vmd1.8.2 on laptop
  • John Stone (Thu May 27 2004 - 10:31:55 CDT)
  • Ramesh K. Sistla (Thu May 27 2004 - 07:34:39 CDT)
• VMD1.8.5 : multiseq db
  • Martin Grana (Thu Aug 31 2006 - 03:21:36 CDT)
  • l.spitzer_at_fr.fournierpharma.com (Wed Aug 30 2006 - 03:06:55 CDT)
  • John Stone (Tue Aug 29 2006 - 12:55:03 CDT)
  • Elijah Roberts (Tue Aug 29 2006 - 12:20:04 CDT)
• VMD1.82 version with MacOS10.3.3 DO NOT WORK
  • Mike McCallum (Mon Mar 22 2004 - 10:40:53 CST)
  • John Stone (Mon Mar 22 2004 - 10:03:24 CST)
  • John Stone (Mon Mar 22 2004 - 09:50:25 CST)
  • Paul Fons (Mon Mar 22 2004 - 06:07:16 CST)
  • Peter Engelhardt (Mon Mar 22 2004 - 02:22:03 CST)
• VMD1.82 version with MacOS10.3.3 Problem solved
  • John Stone (Tue Mar 23 2004 - 09:48:35 CST)
  • Peter Engelhardt (Tue Mar 23 2004 - 02:18:27 CST)
• vmd1.8a16 - no stereo on linux any more
  • John Stone (Mon Jun 24 2002 - 11:35:41 CDT)
  • John Stone (Mon Jun 24 2002 - 10:28:07 CDT)
  • Johannes von Langen (Mon Jun 24 2002 - 06:47:02 CDT)
• VMD1.9.1 is crashing my system
  • Gianluca Interlandi (Fri May 11 2012 - 16:58:47 CDT)
  • Mirco Wahab (Fri May 11 2012 - 11:19:38 CDT)
  • Axel Kohlmeyer (Thu May 10 2012 - 17:19:50 CDT)
  • John Stone (Thu May 10 2012 - 16:38:09 CDT)
  • mpincu (Thu May 10 2012 - 16:24:27 CDT)
• vmd1.9.2 alpha on windows/Mac
  • Mayne, Christopher G (Mon Mar 18 2013 - 09:21:58 CDT)
  • valeria.losasso_at_stfc.ac.uk (Mon Mar 18 2013 - 03:32:27 CDT)
  • Mayne, Christopher G (Fri Mar 15 2013 - 07:46:49 CDT)
  • valeria.losasso_at_stfc.ac.uk (Fri Mar 15 2013 - 05:11:23 CDT)
  • John Stone (Mon Feb 25 2013 - 15:15:13 CST)
  • John Stone (Thu Feb 14 2013 - 10:32:58 CST)
  • valeria.losasso_at_stfc.ac.uk (Tue Feb 12 2013 - 10:42:01 CST)
  • valeria.losasso_at_stfc.ac.uk (Tue Feb 12 2013 - 10:45:28 CST)
• vmd1.9.23 rlwrap: No match
  • Axel Kohlmeyer (Mon Dec 19 2016 - 16:07:55 CST)
  • Strahs, Dr. Daniel Bernard (Sat Dec 17 2016 - 19:06:14 CST)
  • Francesco Pietra (Fri Dec 16 2016 - 01:43:12 CST)
• VMD1.9.4a57 crashes when main console moved to second display
  • Chan, Matthew (Thu Sep 29 2022 - 16:37:35 CDT)
• vmd1.9beta1
  • Peter Freddolino (Wed Feb 23 2011 - 19:30:06 CST)
  • Bennion, Brian (Wed Feb 23 2011 - 14:21:51 CST)
• vmd1.9beta1 namdEnergyPlugin
  • Peter Freddolino (Mon Feb 28 2011 - 19:07:10 CST)
  • Bennion, Brian (Mon Feb 28 2011 - 16:06:28 CST)
  • Peter Freddolino (Fri Feb 25 2011 - 20:09:45 CST)
  • Bennion, Brian (Fri Feb 25 2011 - 10:45:04 CST)
  • Peter Freddolino (Thu Feb 24 2011 - 21:03:43 CST)
  • Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
• VMD: 1.8.7 win32 opengl runtime error
  • John Stone (Fri Aug 21 2009 - 21:58:25 CDT)
  • Guanglei Cui (Fri Aug 21 2009 - 21:48:43 CDT)
  • John Stone (Fri Aug 21 2009 - 09:56:33 CDT)
  • Guanglei Cui (Fri Aug 21 2009 - 09:14:56 CDT)
• VMD: Ability to add terminal carbonyl oxygen
  • Amor San Juan (Sun Nov 07 2010 - 23:32:20 CST)
• VMD: EDM and Gaussian "Cube" reader scripts available
  • John Stone (Fri Feb 22 2002 - 15:25:18 CST)
• VMD: error in ffTK torsion angle optimization
  • Valentin Gogonea (Tue Aug 04 2020 - 21:17:02 CDT)
  • JC Gumbart (Tue Aug 04 2020 - 20:26:58 CDT)
  • JC Gumbart (Sat Jul 11 2020 - 18:18:47 CDT)
  • JC Gumbart (Mon Jul 06 2020 - 18:51:42 CDT)
  • Valentin Gogonea (Sun Jul 05 2020 - 10:23:42 CDT)
• VMD: Mutator --> ASP to ASN problems
  • Peter Murphy (Wed Apr 24 2013 - 07:19:23 CDT)
  • Peter Murphy (Wed Apr 24 2013 - 05:52:41 CDT)
  • Josh Vermaas (Tue Apr 23 2013 - 17:49:23 CDT)
  • Ajasja LjubetiÄ� (Tue Apr 23 2013 - 16:22:47 CDT)
  • Peter Murphy (Tue Apr 23 2013 - 13:30:46 CDT)
  • Ajasja LjubetiÄ� (Tue Apr 23 2013 - 14:29:06 CDT)
  • Peter Murphy (Tue Apr 23 2013 - 13:40:57 CDT)
• VMD: Potential Energy Calculation
  • Justin Gullingsrud (Fri May 07 2004 - 12:49:37 CDT)
  • Shirley Hui (Fri May 07 2004 - 09:44:04 CDT)
  • Dominique Vlieghe (Fri May 07 2004 - 09:25:39 CDT)
  • John Stone (Fri May 07 2004 - 09:30:26 CDT)
  • John Stone (Thu May 06 2004 - 10:15:39 CDT)
  • Shirley Hui (Wed May 05 2004 - 23:28:49 CDT)
• VMD: Problems loading PDB Files from behind a proxy server
  • Greipel.Joachim_at_mh-hannover.de (Fri Oct 23 2015 - 01:15:53 CDT)
• vmd: Saving output
  • Ajasja LjubetiÄ� (Mon Nov 01 2010 - 06:00:58 CDT)
  • Christian Jorgensen (Mon Nov 01 2010 - 04:30:03 CDT)
• VMD: set light coordinates
  • John Stone (Thu Apr 29 2010 - 12:10:07 CDT)
  • Nicolas Floquet (Thu Apr 29 2010 - 02:48:16 CDT)
• vmd: Tcl script help
  • Jérôme Hénin (Sat Oct 30 2010 - 12:47:22 CDT)
  • Ajasja LjubetiÄ� (Fri Oct 29 2010 - 15:10:54 CDT)
  • Christian Jorgensen (Fri Oct 29 2010 - 14:06:59 CDT)
• vmd@ks.uiuc.edu,johns@ks.uiuc.edu
  • John Stone (Fri Oct 21 2005 - 14:26:27 CDT)
  • pinisetty dinesh (Fri Oct 21 2005 - 14:20:45 CDT)
• vmd_init
  • John Stone (Fri Jun 20 2008 - 00:11:41 CDT)
  • Paul Schlesinger (Wed May 28 2008 - 18:25:38 CDT)
• VMD_orient
  • John Stone (Fri Mar 23 2007 - 14:30:22 CDT)
  • pkmukher (Thu Mar 08 2007 - 21:36:49 CST)
• vmd_pdb file format
  • Axel Kohlmeyer (Fri Sep 17 2010 - 12:35:27 CDT)
  • Ramasamy, Ellankavi (Fri Sep 17 2010 - 11:43:18 CDT)
• vmd_plot
  • Axel Kohlmeyer (Wed Mar 25 2009 - 07:47:14 CDT)
  • Francesco Pietra (Wed Mar 25 2009 - 06:16:36 CDT)
• vmd_start_problem_in_mac OSX
  • Raman Parkesh (Thu Sep 30 2010 - 14:38:38 CDT)
  • John Stone (Tue Sep 14 2010 - 13:03:43 CDT)
  • Raman Parkesh (Tue Sep 14 2010 - 12:27:26 CDT)
  • John Stone (Tue Sep 14 2010 - 12:35:46 CDT)
• VMD_waterbox
  • Shomesankar Bhunia (Sun Sep 16 2012 - 23:23:59 CDT)
• vmdbasename: Undefined variable
  • John Stone (Sat Sep 08 2007 - 22:24:02 CDT)
  • Axel Kohlmeyer (Sat Sep 08 2007 - 20:39:56 CDT)
  • Austin Small (Sat Sep 08 2007 - 12:13:41 CDT)
• vmdcavemem....
  • John Stone (Tue Apr 12 2005 - 09:16:34 CDT)
  • Luis Rosales (Mon Apr 11 2005 - 21:19:03 CDT)
• vmdcollab in VMD
  • John Stone (Wed Jan 13 2010 - 15:55:01 CST)
  • xaneorat_at_mail.uni-paderborn.de (Mon Jan 11 2010 - 05:19:33 CST)
• VMDFORCECPUCOUNT
  • csu1505110121_at_163.com (Wed Oct 26 2016 - 22:47:42 CDT)
• VMDMODULATERIBBON or sausage representation
  • Axel Kohlmeyer (Tue Jul 01 2008 - 14:07:42 CDT)
  • Tim Meyer (Tue Jul 01 2008 - 13:38:28 CDT)
• vmdmovie
  • John Stone (Thu Jan 24 2002 - 12:41:36 CST)
  • Stéphane Teletchéa (Thu Jan 24 2002 - 11:47:23 CST)
• vmdmovie (ppmtompeg) doesn't work
  • John Stone (Tue Jan 24 2006 - 12:50:56 CST)
  • Jackson Gois (Tue Jan 24 2006 - 12:40:43 CST)
• vmdmovie command line
  • John Stone (Mon Jan 31 2005 - 13:35:36 CST)
  • Stuart Murdock (Wed Jan 26 2005 - 16:42:11 CST)
• vmdmovie in OS X.3
  • John Stone (Tue Nov 25 2003 - 15:51:28 CST)
  • John Stone (Mon Nov 24 2003 - 21:07:12 CST)
  • Robert Brunner (Mon Nov 24 2003 - 19:26:44 CST)
  • Robert Brunner (Mon Nov 24 2003 - 19:15:34 CST)
  • John Stone (Mon Nov 24 2003 - 18:51:01 CST)
  • Dmitry A Kondrashov (Mon Nov 24 2003 - 16:42:10 CST)
• vmdmovie on OS X current
  • John Stone (Fri May 09 2003 - 09:48:56 CDT)
  • Charles McCallum (Fri May 09 2003 - 02:22:23 CDT)
• vmdmovie plugin
  • Chang, Christopher (Fri Feb 18 2005 - 15:21:59 CST)
  • John Stone (Fri Feb 18 2005 - 10:41:06 CST)
  • Marc Q. Ma (Fri Feb 18 2005 - 10:31:09 CST)
• vmdmovie problem
  • John Stone (Fri Aug 09 2002 - 17:00:08 CDT)
  • John Stone (Thu Aug 01 2002 - 23:53:24 CDT)
  • Michael Murray (Thu Aug 01 2002 - 23:52:26 CDT)
  • John Stone (Thu Aug 01 2002 - 20:00:51 CDT)
  • mimurra3 (Thu Aug 01 2002 - 14:07:25 CDT)
• vmdnumpy ?
  • nettles (Thu Jun 03 2004 - 18:02:19 CDT)
• vmdnumpy ? (IED 2.0 on MacOS X /w VMD 1.8.2)
  • John Stone (Tue Jun 15 2004 - 13:45:47 CDT)
  • John Stone (Fri Jun 11 2004 - 16:28:44 CDT)
  • nettles (Fri Jun 11 2004 - 15:29:15 CDT)
  • John Stone (Fri Jun 11 2004 - 14:33:34 CDT)
• VMDNUMPY and OS X (Panther)
  • John Stone (Thu Dec 16 2004 - 16:22:12 CST)
  • Joseph E. Curtis (Thu Dec 16 2004 - 15:40:16 CST)
• vmdnumpy for IED...
  • Axel Kohlmeyer (Sun Jun 14 2009 - 18:23:41 CDT)
  • Cihan Aydin (Sun Jun 14 2009 - 17:42:36 CDT)
• vmdrc file not loaded when the filename is a command line argument
  • Stefan Kuczera (Mon Apr 03 2017 - 09:15:22 CDT)
  • Dimitrova, Maria (Sun Apr 02 2017 - 07:12:30 CDT)
  • Vermaas, Joshua (Sat Apr 01 2017 - 21:30:33 CDT)
  • Dimitrova, Maria (Sat Apr 01 2017 - 10:49:55 CDT)
• VMDTECH: CONECTing atoms
  • Andrew Dalke (Mon Aug 24 1998 - 15:01:05 CDT)
  • Keith Refson (Mon Aug 24 1998 - 09:28:47 CDT)
  • Andrew Dalke (Fri Aug 14 1998 - 17:16:26 CDT)
• vmdtext & Window
  • JC Gumbart (Sun Sep 04 2005 - 02:08:01 CDT)
  • bybaker_at_itsa.ucsf.edu (Sat Sep 03 2005 - 22:06:14 CDT)
• vmdtext and .cshrc.
  • Jacinto S. (Sat Sep 03 2005 - 14:37:29 CDT)
  • bybaker_at_itsa.ucsf.edu (Fri Sep 02 2005 - 21:09:25 CDT)
• vmdtext on Mac OS X
  • John Stone (Fri Feb 03 2006 - 17:19:37 CST)
  • dimka (Thu Feb 02 2006 - 18:25:08 CST)
  • John Stone (Thu Feb 02 2006 - 17:34:43 CST)
  • dimka (Thu Feb 02 2006 - 13:54:32 CST)
• Voicemail from Pavan Ghatty (5 seconds)
  • pavan.vmd_at_gmail.com (Thu Dec 21 2006 - 18:17:51 CST)
• Volarea
  • Himanshu Joshi (Mon Oct 21 2013 - 07:17:05 CDT)
  • Himanshu Joshi (Fri Oct 18 2013 - 12:09:06 CDT)
  • Axel Kohlmeyer (Fri Oct 18 2013 - 08:35:35 CDT)
  • João Ribeiro (Fri Oct 18 2013 - 08:44:54 CDT)
  • Himanshu Joshi (Fri Oct 18 2013 - 07:44:40 CDT)
• Volarea command line options
  • João Ribeiro KS (Wed Mar 22 2017 - 14:46:08 CDT)
  • Ban Arn (Wed Mar 22 2017 - 14:33:37 CDT)
• Volmap
  • Axel Kohlmeyer (Mon Nov 04 2013 - 08:51:50 CST)
  • Axel Kohlmeyer (Mon Nov 04 2013 - 07:31:29 CST)
  • bharat gupta (Mon Nov 04 2013 - 07:47:29 CST)
  • bharat gupta (Mon Nov 04 2013 - 06:41:42 CST)
  • Axel Kohlmeyer (Mon Nov 04 2013 - 06:24:14 CST)
  • bharat gupta (Mon Nov 04 2013 - 05:42:17 CST)
  • bharat gupta (Mon Nov 04 2013 - 04:49:34 CST)
  • Áõ½ð·å (Sun Jul 01 2012 - 09:01:33 CDT)
  • Peter Freddolino (Tue Oct 21 2008 - 10:57:44 CDT)
  • Anton Arkhipov (Tue Oct 21 2008 - 10:43:40 CDT)
  • Panagiota Georgoulia (Tue Oct 21 2008 - 09:07:35 CDT)
  • Peter Freddolino (Tue Oct 21 2008 - 07:26:23 CDT)
  • Panagiota Georgoulia (Tue Oct 21 2008 - 06:17:51 CDT)
• volmap command and masks
  • John Stone (Sun May 20 2007 - 13:16:38 CDT)
  • Marc Baaden (Fri May 18 2007 - 17:01:20 CDT)
• volmap commands
  • Lutz Maibaum (Wed Jun 20 2007 - 23:19:01 CDT)
  • Jordi Cohen (Wed Jun 20 2007 - 21:56:08 CDT)
  • Lutz Maibaum (Wed Jun 20 2007 - 20:35:15 CDT)
• volmap computation_ILS method
  • Ashar Malik (Sat Jun 06 2020 - 17:42:31 CDT)
  • Muhammad tariq (Sat Jun 06 2020 - 12:08:27 CDT)
• VolMap data format
  • Vermaas, Joshua (Fri Feb 10 2017 - 16:36:10 CST)
  • John Stone (Fri Feb 10 2017 - 16:06:32 CST)
  • Vermaas, Joshua (Fri Feb 10 2017 - 15:52:31 CST)
  • John Stone (Fri Feb 10 2017 - 14:34:31 CST)
  • Karl Decker (Fri Feb 10 2017 - 14:32:22 CST)
• Volmap ILS: Orient function & Invalid VDW parameters Error
  • larac_at_berkeley.edu (Tue Feb 15 2011 - 18:23:57 CST)
• volmap masks
  • John Stone (Tue Mar 03 2009 - 22:19:47 CST)
  • Dan Willenbring (Wed Feb 25 2009 - 14:17:32 CST)
• VolMap Occupancy
  • John Stone (Sat Nov 23 2013 - 00:39:53 CST)
  • Anne Laustsen (Tue Nov 05 2013 - 03:04:48 CST)
• volmap parameters
  • JhonY. I. (Sat Nov 21 2015 - 20:52:10 CST)
• volmap question
  • John Stone (Fri May 08 2009 - 09:49:33 CDT)
  • Jian Dai (Fri May 08 2009 - 01:22:22 CDT)
• volmap to find free volume
  • John Stone (Wed Nov 13 2019 - 00:22:54 CST)
  • MD Simulation (Fri Nov 08 2019 - 14:57:35 CST)
• VolMap Tool coulombmsm - with periodic boundary conditions
  • John Stone (Wed Aug 22 2012 - 09:31:49 CDT)
  • Bjørnar Jensen (Wed Aug 22 2012 - 07:40:24 CDT)
  • Bjørnar Jensen (Wed Aug 22 2012 - 06:19:08 CDT)
• VolMap Tool Question
  • Axel Kohlmeyer (Mon Jun 13 2011 - 14:31:47 CDT)
  • Joe Janicki (Mon Jun 13 2011 - 13:36:18 CDT)
• Volmap Tool: Angular or spatial correlation function around a center molecule
  • Axel Kohlmeyer (Thu Dec 30 2010 - 14:53:56 CST)
  • Xijun Wang (Wed Dec 29 2010 - 17:57:56 CST)
• VolMap use !!
  • Xavier Periole (Thu May 25 2006 - 13:07:42 CDT)
• VolMap. mass weighted densities
  • John Stone (Tue Jul 24 2012 - 10:26:00 CDT)
  • raunest (Tue Jul 24 2012 - 04:05:43 CDT)
• Voltool Averaging Maps
  • Josh Vermaas (Mon Aug 16 2021 - 10:00:14 CDT)
  • Mcguire, Kelly (Fri Aug 13 2021 - 19:23:36 CDT)
• voltool mask usage
  • Matthieu (Sun Feb 09 2020 - 18:43:15 CST)
  • Bassam Haddad (Sat Feb 08 2020 - 03:10:55 CST)
  • Matthieu (Fri Feb 07 2020 - 19:11:03 CST)
• Volume accessed by a molecule during the MD simulation
  • John Stone (Tue Jul 14 2015 - 10:56:12 CDT)
  • mish (Tue Jul 07 2015 - 12:12:29 CDT)
• volume analysis in vmd
  • Dudo (Mon Nov 04 2013 - 11:02:04 CST)
  • Dudo (Thu Oct 31 2013 - 12:48:46 CDT)
  • Axel Kohlmeyer (Thu Oct 31 2013 - 11:00:24 CDT)
  • John Stone (Thu Oct 31 2013 - 10:05:24 CDT)
  • Revthi Sanker (Wed Oct 30 2013 - 03:44:54 CDT)
• Volume coloring problems
  • John Stone (Tue May 24 2005 - 09:06:33 CDT)
  • Hernán Alonso (Tue May 24 2005 - 03:44:48 CDT)
• Volume data formats
  • Axel Kohlmeyer (Thu Feb 14 2008 - 12:23:56 CST)
  • Wesley Smith (Thu Feb 14 2008 - 12:37:16 CST)
  • John Stone (Thu Feb 14 2008 - 12:10:26 CST)
  • Ignacio Fernández Galván (Thu Feb 14 2008 - 11:58:40 CST)
• volume from VMD and NAMD different?
  • Brian Bennion (Fri Aug 05 2005 - 16:12:34 CDT)
• volume of hydration shells
  • Boris Steipe (Thu Jun 23 2011 - 09:00:10 CDT)
  • divya nayar (Thu Jun 23 2011 - 06:12:35 CDT)
• volume problems
  • John Stone (Thu Mar 06 2003 - 13:42:53 CST)
  • Klaus Kramer (Thu Mar 06 2003 - 12:56:57 CST)
• volume shading in 1.8.3b1 ?
  • Oliver Beckstein (Tue Feb 08 2005 - 15:28:30 CST)
  • Axel Kohlmeyer (Mon Feb 07 2005 - 14:27:53 CST)
  • John Stone (Mon Feb 07 2005 - 11:56:58 CST)
  • Oliver Beckstein (Mon Feb 07 2005 - 10:58:50 CST)
  • John Stone (Mon Feb 07 2005 - 10:07:46 CST)
  • Oliver Beckstein (Mon Feb 07 2005 - 10:03:34 CST)
• Volume Slice
  • John Stone (Wed Jan 31 2007 - 15:59:36 CST)
  • Adrian Roitberg (Wed Jan 31 2007 - 15:07:45 CST)
• Volume Slice + Coloring by volume problem in MacOsx
  • John Stone (Fri Nov 11 2011 - 10:12:57 CST)
  • Passerone, Daniele (Fri Nov 04 2011 - 00:31:15 CDT)
• Volume Slice + Coloring by volume problem in MacOsx (REPOST)
  • Passerone, Daniele (Fri Nov 11 2011 - 15:06:27 CST)
  • John Stone (Fri Nov 11 2011 - 15:14:37 CST)
• Volume slice color scale
  • Ignacio Fernández Galván (Fri Jun 20 2008 - 04:15:39 CDT)
• volume slice problem
  • John Stone (Fri Jul 25 2003 - 10:12:03 CDT)
  • Giovanni Settanni (Fri Jul 25 2003 - 06:04:38 CDT)
• Volume slice rendering TachyonOptiX
  • John Stone (Wed Apr 06 2016 - 19:14:37 CDT)
  • Kyle Mills (Wed Apr 06 2016 - 06:36:21 CDT)
• Volume slice-I: slice color
  • John Stone (Thu Sep 11 2008 - 11:06:03 CDT)
  • pontes_at_if.usp.br (Thu Sep 11 2008 - 07:22:07 CDT)
• Volume slice: slice color
  • John Stone (Wed Sep 10 2008 - 14:07:04 CDT)
  • pontes_at_if.usp.br (Wed Sep 10 2008 - 10:31:55 CDT)
• volume slices
  • John Stone (Sun Feb 04 2007 - 15:09:52 CST)
  • Jim Fonseca (Sun Feb 04 2007 - 14:32:11 CST)
• Volume slices of Gaussian Cube Files: Color scale
  • Axel Kohlmeyer (Thu Jun 29 2006 - 17:50:24 CDT)
  • Berit Hinnemann (Thu Jun 29 2006 - 13:42:05 CDT)
• VolumeSlice
  • John Stone (Tue Aug 10 2004 - 16:41:24 CDT)
  • matteo (Tue Aug 10 2004 - 16:29:47 CDT)
• Volumeslice doesn't work in 1.8.3
  • John Stone (Mon Feb 28 2005 - 15:35:00 CST)
  • John Stone (Mon Feb 28 2005 - 14:08:52 CST)
  • Paul Tangney (Mon Feb 28 2005 - 13:55:17 CST)
• Volumeslice in arbitrary plane
  • John Stone (Wed Feb 23 2005 - 11:07:42 CST)
  • Jérôme Hénin (Tue Feb 22 2005 - 10:13:28 CST)
• VolumeSlices
  • John Stone (Tue Mar 13 2007 - 10:21:19 CDT)
  • Pawel Wielgus (Tue Mar 13 2007 - 08:07:38 CDT)
  • John Stone (Mon Mar 12 2007 - 17:29:11 CDT)
  • Pawel Wielgus (Mon Mar 12 2007 - 03:00:45 CDT)
  • John Stone (Fri Mar 09 2007 - 10:10:11 CST)
  • Pawel Wielgus (Fri Mar 09 2007 - 09:54:26 CST)
  • John Stone (Fri Mar 09 2007 - 09:42:39 CST)
  • Pawel Wielgus (Fri Mar 09 2007 - 09:27:17 CST)
• Volumetric Data Formats for VMD
  • John Stone (Thu Jan 24 2002 - 09:51:44 CST)
  • Reinhard Klement (Thu Jan 24 2002 - 09:02:33 CST)
• Volumetric data: Periodic expansion does not work; why?
  • Rob (Tue Oct 17 2006 - 21:02:42 CDT)
  • Axel Kohlmeyer (Tue Oct 17 2006 - 11:08:49 CDT)
  • Rob (Tue Oct 17 2006 - 02:17:26 CDT)
  • John Stone (Fri Oct 13 2006 - 13:55:15 CDT)
  • Axel Kohlmeyer (Fri Oct 13 2006 - 11:15:36 CDT)
  • Rob (Thu Oct 12 2006 - 23:24:26 CDT)
• volumetric maps
  • John Stone (Thu Oct 02 2008 - 12:05:19 CDT)
  • Axel Kohlmeyer (Thu Oct 02 2008 - 10:57:45 CDT)
  • markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:08:11 CDT)
  • markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:18:38 CDT)
• volumetric trajectory
  • Fahimeh Baftizadeh (Fri Jan 14 2011 - 12:26:40 CST)
  • Axel Kohlmeyer (Fri Jan 14 2011 - 12:49:50 CST)
  • Axel Kohlmeyer (Mon Jan 10 2011 - 17:29:39 CST)
  • Fahimeh Baftizadeh (Mon Jan 10 2011 - 15:29:46 CST)
  • John Stone (Mon Jan 10 2011 - 14:28:55 CST)
  • Fahimeh Baftizadeh (Mon Jan 10 2011 - 04:50:46 CST)
• volutil option
  • Ryan McGreevy (Mon May 20 2019 - 08:36:26 CDT)
  • xiaoyu qing (Sun May 19 2019 - 03:46:15 CDT)
• volutil: -combinepmf - Bug?
  • Simon Dürr (Mon Sep 21 2015 - 13:39:30 CDT)
• VR
  • Alin Marin Elena - UKRI STFC (Wed Aug 22 2018 - 15:49:22 CDT)
  • Philip Loche (Wed Aug 01 2018 - 02:32:42 CDT)
  • John Stone (Tue Jul 31 2018 - 21:37:13 CDT)
  • McGuire, Kelly (Tue Jul 31 2018 - 21:00:49 CDT)
  • John Stone (Tue Jul 31 2018 - 16:39:23 CDT)
  • McGuire, Kelly (Tue Jul 31 2018 - 15:40:27 CDT)
  • Philip Loche (Tue Jul 31 2018 - 15:24:46 CDT)
  • McGuire, Kelly (Tue Jul 31 2018 - 14:06:36 CDT)
  • John Stone (Tue Jul 31 2018 - 14:24:17 CDT)
  • John Stone (Tue Jul 31 2018 - 14:03:29 CDT)
  • McGuire, Kelly (Mon Jul 30 2018 - 19:38:07 CDT)
• VR movie
  • John Stone (Wed Aug 25 2021 - 21:45:51 CDT)
  • Amnah Alalmaie (Wed Aug 25 2021 - 21:18:01 CDT)
• VR Movie Rendering
  • Collette Riviere (Tue Mar 05 2024 - 22:05:16 CST)
• VR Movies
  • Diego Gomes (Fri Apr 05 2024 - 05:20:50 CDT)
  • Collette Riviere (Wed Apr 03 2024 - 23:04:15 CDT)
• VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames
  • John Stone (Tue Jun 16 2020 - 12:05:48 CDT)
  • Bart Bruininks (Tue Jun 16 2020 - 07:29:14 CDT)
  • John Stone (Thu Jun 11 2020 - 15:59:34 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 11:07:58 CDT)
  • John Stone (Wed Jun 10 2020 - 11:16:17 CDT)
  • John Stone (Wed Jun 10 2020 - 11:11:36 CDT)
  • John Stone (Wed Jun 10 2020 - 10:05:54 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 08:37:09 CDT)
  • Bart Bruininks (Wed Jun 10 2020 - 08:05:10 CDT)
• vrml
  • John Stone (Wed Sep 24 2003 - 13:12:14 CDT)
  • Darui Xu (Wed Sep 24 2003 - 11:19:37 CDT)
• VRML files from VMD are malformed
  • John Stone (Wed Sep 06 2017 - 21:48:06 CDT)
• vrml output
  • John Stone (Mon Sep 16 2002 - 16:02:31 CDT)
  • Yifei Kong (Wed Sep 11 2002 - 21:04:15 CDT)
• VRML2 export and viewpoints
  • Marc Baaden (Tue Aug 31 2004 - 16:36:05 CDT)
  • John Stone (Tue Aug 31 2004 - 15:06:35 CDT)
  • Marc Baaden (Sun Aug 29 2004 - 05:37:28 CDT)
• vrml2 export without PROTO?
  • Raymond de Vries (Tue Feb 08 2005 - 10:59:26 CST)
  • John Stone (Tue Feb 08 2005 - 10:15:41 CST)
  • Raymond de Vries (Tue Feb 08 2005 - 04:43:40 CST)
  • John Stone (Mon Feb 07 2005 - 10:03:35 CST)
  • Raymond de Vries (Mon Feb 07 2005 - 04:45:09 CST)
• vrml2 output crashes VTK/Paraview
  • John Stone (Thu Feb 03 2011 - 09:25:00 CST)
  • Peter C. Lai (Thu Feb 03 2011 - 02:42:17 CST)
  • John Stone (Thu Jan 27 2011 - 20:09:15 CST)
  • Axel Kohlmeyer (Thu Jan 27 2011 - 20:05:25 CST)
  • Peter C. Lai (Thu Jan 27 2011 - 19:14:25 CST)
• VRML2.0
  • John Stone (Tue Oct 01 2002 - 10:05:37 CDT)
• VRPN & PHANToM Omni
  • John Stone (Wed Apr 15 2009 - 13:59:42 CDT)
  • Mark Cunningham (Wed Apr 15 2009 - 13:40:03 CDT)
• vrpn and vmd 1.9.3 - which version to use ?
  • Paulo E. Abreu (Wed Dec 19 2018 - 03:41:42 CST)
• VRPN driver for Novint Falcon haptic device available - Looking for Testers
  • John Stone (Mon Aug 19 2013 - 11:52:52 CDT)
  • Axel Kohlmeyer (Sat Aug 17 2013 - 09:05:43 CDT)
  • Tristan Croll (Fri Aug 16 2013 - 06:41:17 CDT)
  • Axel Kohlmeyer (Wed Jul 03 2013 - 23:44:18 CDT)
  • Tristan Croll (Wed Jul 03 2013 - 23:32:06 CDT)
  • Tristan Croll (Wed Jul 03 2013 - 23:46:50 CDT)
  • Marcos Ackel (Wed Oct 17 2012 - 20:58:31 CDT)
  • Axel Kohlmeyer (Sun Oct 14 2012 - 13:31:12 CDT)
  • Marcos Ackel (Sun Oct 14 2012 - 12:31:59 CDT)
  • Axel Kohlmeyer (Fri Apr 23 2010 - 15:59:34 CDT)
• VRPN support for the Windows VMD 1.9.1
  • John Stone (Tue Jan 13 2015 - 18:39:02 CST)
  • Tristan Croll (Tue Jan 13 2015 - 18:32:18 CST)
  • George Patargias (Tue Oct 21 2014 - 01:59:12 CDT)
  • John Stone (Mon Oct 20 2014 - 13:21:06 CDT)
  • George Patargias (Mon Oct 20 2014 - 09:15:34 CDT)
  • George Patargias (Fri Oct 17 2014 - 02:45:52 CDT)
  • John Stone (Thu Oct 16 2014 - 15:40:32 CDT)
  • George Patargias (Thu Oct 16 2014 - 09:27:53 CDT)
• VRPN, phantom and VMD...
  • John Stone (Mon Jul 16 2007 - 16:11:10 CDT)
  • Dr. Luis Rosales Leon (Wed Jul 04 2007 - 17:12:38 CDT)
• VRPN-ICMS conflict with NVidia driver
  • John Stone (Wed Nov 30 2011 - 09:22:56 CST)
  • John Stone (Fri Nov 18 2011 - 01:49:18 CST)
  • Tristan Croll (Wed Nov 16 2011 - 19:04:38 CST)
  • Tristan Croll (Tue Nov 01 2011 - 19:28:51 CDT)
  • Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
  • Axel Kohlmeyer (Tue Nov 01 2011 - 19:08:07 CDT)
  • Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
  • Tristan Croll (Tue Nov 01 2011 - 02:16:14 CDT)
• VS: average area per lipid
  • Bo Højen Justensen (Mon Mar 03 2008 - 15:10:09 CST)
• VS: Outline rendering style with Tachyon
  • Heikki Kasnanen (Mon May 18 2009 - 14:50:52 CDT)
• VTF
  • John Stone (Tue Feb 04 2014 - 11:01:47 CST)
  • Axel Kohlmeyer (Tue Feb 04 2014 - 10:29:13 CST)
  • Olaf Lenz (Tue Feb 04 2014 - 10:22:15 CST)
  • John Stone (Tue Feb 04 2014 - 10:21:58 CST)
  • Olaf Lenz (Tue Feb 04 2014 - 10:27:57 CST)
  • Ming-Tsung Lee (Tue Feb 04 2014 - 10:08:26 CST)
  • John Stone (Tue Feb 04 2014 - 10:33:04 CST)
  • Olaf Lenz (Tue Feb 04 2014 - 08:32:49 CST)
  • John Stone (Mon Feb 03 2014 - 16:36:47 CST)
  • Axel Kohlmeyer (Mon Feb 03 2014 - 13:21:47 CST)
  • Ming-Tsung Lee (Mon Feb 03 2014 - 13:01:52 CST)
  • Olaf Lenz (Mon Feb 03 2014 - 12:09:13 CST)
  • Olaf Lenz (Thu Jul 18 2013 - 10:10:48 CDT)
  • Bailey, Steven (Thu Jul 18 2013 - 08:35:28 CDT)
• VTF file
  • Olaf Lenz (Mon Jul 02 2007 - 02:53:38 CDT)
  • Jakob Petersen (Sun Jul 01 2007 - 13:56:58 CDT)
• VTF trajectory from coarse grained ESPReSo simulations. Visualization in Windows.
  • Dudo (Wed Jan 12 2011 - 12:16:39 CST)
  • Axel Kohlmeyer (Wed Jan 12 2011 - 11:40:12 CST)
  • Dudo (Wed Jan 12 2011 - 06:41:27 CST)
• VTK with VMD
  • John Stone (Fri Feb 10 2006 - 13:52:53 CST)
  • Rahul Sampath (Thu Feb 09 2006 - 21:15:27 CST)
• W4tches from simple to luxurious at Prest1ge Repl1cas
  • Douglas Dahl (Wed Aug 22 2007 - 13:49:57 CDT)
  • Dominique Compton (Mon Apr 23 2007 - 17:51:51 CDT)
• Wait command in Win2000
  • John Stone (Fri Apr 11 2003 - 17:24:22 CDT)
  • John Stone (Fri Apr 11 2003 - 16:47:41 CDT)
  • Michael Redmond (Fri Apr 11 2003 - 16:28:43 CDT)
  • John Stone (Fri Apr 11 2003 - 15:52:33 CDT)
  • Michael Redmond (Fri Apr 11 2003 - 15:43:13 CDT)
• Waiting for files to load in VMD
  • Justin Gullingsrud (Fri Nov 09 2001 - 11:14:28 CST)
• Warining when generating psf file
  • Jim Phillips (Wed Oct 19 2005 - 18:15:26 CDT)
  • phoenix (Sun Oct 16 2005 - 03:12:12 CDT)
• warning during psfgen file
  • Mamta Mohan (Thu Sep 18 2008 - 13:08:29 CDT)
  • Mamta Mohan (Thu Sep 18 2008 - 10:11:33 CDT)
• warning from psfgen: poorly guessed coordinates...
  • Leonardo G. Trabuco (Wed Apr 05 2006 - 22:08:02 CDT)
  • Margaret Shun Cheung (Wed Apr 05 2006 - 20:49:30 CDT)
  • John Stone (Wed Apr 05 2006 - 20:47:40 CDT)
  • Margaret Shun Cheung (Tue Apr 04 2006 - 17:17:17 CDT)
• Warning in the log file
  • candy deck (Thu Jan 27 2011 - 09:28:12 CST)
• Warning) Unusual bond between residues 25 and 26
  • John Stone (Thu Apr 13 2006 - 01:34:09 CDT)
  • John Stone (Mon Feb 27 2006 - 16:25:38 CST)
  • Nuno R. L. Ferreira (Mon Feb 27 2006 - 09:25:57 CST)
  • Nuno R. L. Ferreira (Sat Feb 25 2006 - 11:42:49 CST)
• Warning: add bond failed in patch ACE
  • Chang, Christopher (Thu Oct 20 2005 - 11:41:43 CDT)
  • Per Jr. Greisen (Thu Oct 20 2005 - 09:35:44 CDT)
• WARNING: Coordinates will be rotated to comply ...
  • Axel Kohlmeyer (Tue Apr 04 2006 - 14:26:01 CDT)
  • Peter Hamm (Mon Apr 03 2006 - 08:01:57 CDT)
• Warning: no convergence in alignment
  • Jianhui Tian (Wed Oct 29 2008 - 15:16:08 CDT)
  • John Stone (Mon Oct 27 2008 - 16:35:37 CDT)
  • Jianhui Tian (Mon Oct 27 2008 - 14:01:21 CDT)
  • Jianhui Tian (Fri Oct 24 2008 - 17:02:08 CDT)
• Warning: poorly guessed coordinates using PsfGen
  • Axel Kohlmeyer (Tue Sep 05 2006 - 10:53:35 CDT)
  • Lechuga, Javier (Tue Sep 05 2006 - 10:23:35 CDT)
• warnings during plugin build
  • Axel Kohlmeyer (Tue Apr 22 2008 - 05:39:59 CDT)
  • Vlad Cojocaru (Tue Apr 22 2008 - 03:39:43 CDT)
  • John Stone (Mon Apr 21 2008 - 19:50:11 CDT)
  • Axel Kohlmeyer (Mon Apr 21 2008 - 18:45:50 CDT)
  • Cojocaru,Vlad (Mon Apr 21 2008 - 18:35:21 CDT)
  • Axel Kohlmeyer (Sun Apr 20 2008 - 13:33:29 CDT)
  • Cojocaru,Vlad (Sun Apr 20 2008 - 12:37:39 CDT)
  • Cojocaru,Vlad (Sun Apr 20 2008 - 03:51:17 CDT)
  • Axel Kohlmeyer (Sat Apr 19 2008 - 18:40:41 CDT)
  • Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
  • John Stone (Sat Apr 19 2008 - 14:29:46 CDT)
  • Cojocaru,Vlad (Sat Apr 19 2008 - 13:34:22 CDT)
  • John Stone (Sat Apr 19 2008 - 14:46:06 CDT)
  • Axel Kohlmeyer (Sat Apr 19 2008 - 09:21:04 CDT)
  • Cojocaru,Vlad (Sat Apr 19 2008 - 09:09:32 CDT)
• was: Selecting Cl- Na; now: redefining key words in VMD
  • Axel Kohlmeyer (Wed Mar 17 2010 - 17:20:02 CDT)
  • Thomas C. Bishop (Wed Mar 17 2010 - 16:38:25 CDT)
• Watches for him, her and you
  • Penny Boyle (Fri Jun 06 2008 - 19:47:03 CDT)
• Watches made to impress
  • Clinton Sylvester (Thu May 01 2008 - 10:40:03 CDT)
• Water and protein
  • John Stone (Wed May 03 2006 - 14:16:50 CDT)
  • Al-Rawi, Ahlam (Wed May 03 2006 - 13:40:44 CDT)
• Water atoms' explosion out of solvate box in my RBCG simulation on NAMD
  • ThatMind TV (Mon Oct 23 2017 - 05:53:23 CDT)
• water box
  • Alexander A. Vakhrushev (Tue Sep 30 2008 - 09:24:43 CDT)
  • Rudra Banerjee (Tue Sep 30 2008 - 03:48:37 CDT)
  • Alexander A. Vakhrushev (Tue Sep 30 2008 - 04:55:46 CDT)
  • John Stone (Sun Feb 12 2006 - 16:33:58 CST)
  • lily jin (Fri Feb 10 2006 - 17:07:13 CST)
  • John Stone (Fri Apr 11 2003 - 14:56:41 CDT)
  • John Stone (Fri Apr 11 2003 - 14:55:44 CDT)
  • Ioana Cozmuta (Thu Apr 10 2003 - 20:05:39 CDT)
  • Ioana Cozmuta (Thu Apr 10 2003 - 19:52:25 CDT)
  • John Stone (Thu Apr 10 2003 - 19:30:22 CDT)
  • Ioana Cozmuta (Thu Apr 10 2003 - 19:00:42 CDT)
• water box...
  • sstappa_at_uwm.edu (Thu Jul 06 2006 - 19:59:31 CDT)
  • John Stone (Mon Jun 26 2006 - 17:32:45 CDT)
  • Charles McCallum (Sat Jun 24 2006 - 18:24:16 CDT)
  • ivana adamovic (Sat Jun 24 2006 - 08:37:57 CDT)
• water box...density!!!
  • Rudra Banerjee (Mon Jul 28 2008 - 05:02:55 CDT)
  • Christopher Gillespie (Mon Jul 28 2008 - 09:43:47 CDT)
• water bridged H-bond calculation
  • Hitesh Patel (Thu Oct 06 2011 - 07:17:26 CDT)
• water bridges
  • Alexei Rossokhin (Wed Jun 15 2022 - 09:14:46 CDT)
• water cluster analysis?
  • Axel Kohlmeyer (Sun Sep 22 2013 - 13:55:35 CDT)
  • Axel Kohlmeyer (Sun Sep 22 2013 - 10:27:02 CDT)
  • Subrata Paul (Sun Sep 22 2013 - 08:50:33 CDT)
• water cluster size analysis
  • Axel Kohlmeyer (Fri Sep 06 2013 - 08:16:06 CDT)
  • Subrata Paul (Fri Sep 06 2013 - 07:14:47 CDT)
• water in a certein box
  • John Stone (Thu Jan 21 2010 - 23:43:32 CST)
  • Naiyin Yu (Thu Jan 21 2010 - 17:09:10 CST)
• Water in binding site
  • ban arn (Mon Aug 29 2011 - 04:47:53 CDT)
• water in crystal
  • yp sun (Sat Apr 27 2013 - 19:43:24 CDT)
• water inside the protein
  • John Stone (Tue Apr 05 2005 - 18:46:30 CDT)
  • Swarna Patra (Wed Mar 30 2005 - 18:16:47 CST)
• water interaction - force field kit vmd -
  • Mayne, Christopher G (Mon Sep 23 2013 - 07:35:25 CDT)
  • Mohan maruthi sena (Sat Sep 21 2013 - 14:23:58 CDT)
• Water interaction generation step in ffTK
  • Josh Vermaas (Tue Jul 09 2013 - 16:02:24 CDT)
  • Peterson J (Tue Jul 09 2013 - 14:59:47 CDT)
• water is forming bonds between hydrogens
  • Axel Kohlmeyer (Wed Jun 15 2011 - 10:38:26 CDT)
  • Magnus Andersson (Wed Jun 15 2011 - 10:01:55 CDT)
  • PAUL NEWMAN (Wed Jun 15 2011 - 00:25:46 CDT)
• water is forming bonds between oxigens
  • PAUL NEWMAN (Wed Jun 15 2011 - 00:01:37 CDT)
• water layers
  • John Stone (Mon Apr 10 2006 - 11:35:44 CDT)
  • xiaoqin huang (Fri Apr 07 2006 - 14:08:38 CDT)
• water mean residence time
  • Axel Kohlmeyer (Fri Apr 27 2012 - 18:30:21 CDT)
  • jampani srinivas (Fri Apr 27 2012 - 17:23:53 CDT)
• Water mediated hydrogen bond - VMD script
  • ban arn (Tue Oct 26 2010 - 13:31:42 CDT)
• water model
  • Justin Gullingsrud (Wed Dec 18 2002 - 21:59:12 CST)
  • Ioana Cozmuta (Wed Dec 18 2002 - 19:56:03 CST)
• water model used for the waterbox in VMD
  • Axel Kohlmeyer (Tue Aug 08 2006 - 09:22:13 CDT)
  • Vlad Cojocaru (Tue Aug 08 2006 - 08:32:07 CDT)
• Water Models
  • Axel Kohlmeyer (Sat Apr 02 2011 - 05:34:38 CDT)
  • Chathurika Abeyrathne (Sat Apr 02 2011 - 02:43:29 CDT)
• Water molar mass in autoionize.tcl
  • Peter Jensen Husen (Mon Dec 18 2017 - 03:26:09 CST)
  • JC Gumbart (Sat Dec 09 2017 - 07:52:15 CST)
  • Peter Jensen Husen (Fri Dec 08 2017 - 07:16:07 CST)
• water molecule count
  • Axel Kohlmeyer (Tue Feb 01 2011 - 11:33:34 CST)
  • Jérôme Hénin (Tue Feb 01 2011 - 11:19:15 CST)
  • ban arn (Tue Feb 01 2011 - 10:25:52 CST)
  • Jérôme Hénin (Tue Feb 01 2011 - 10:12:47 CST)
  • ban arn (Tue Feb 01 2011 - 08:56:55 CST)
• Water molecule ID in Hydrogen bond plugin
  • CHARLES MCCALLUM (Tue Mar 01 2022 - 14:58:06 CST)
  • CHARLES MCCALLUM (Tue Mar 01 2022 - 15:01:32 CST)
  • Gumbart, JC (Tue Mar 01 2022 - 13:30:26 CST)
  • SYEDA SABIHA SULTANA LUBNA . (Mon Feb 28 2022 - 03:38:01 CST)
• Water molecules
  • Jinasena Hewage (Sat Jun 13 2015 - 16:11:14 CDT)
  • Axel Kohlmeyer (Fri Jun 12 2015 - 17:16:42 CDT)
  • Jinasena Hewage (Fri Jun 12 2015 - 15:51:20 CDT)
  • oguz gurbulak (Mon Jan 02 2012 - 07:49:12 CST)
• water molecules amber force field
  • Stefano Guglielmo (Thu Apr 12 2018 - 18:44:28 CDT)
  • Carlos Simmerling (Thu Apr 12 2018 - 15:50:47 CDT)
  • Vermaas, Joshua (Thu Apr 12 2018 - 14:57:32 CDT)
  • Brian Radak (Thu Apr 12 2018 - 12:23:35 CDT)
  • Stefano Guglielmo (Thu Apr 12 2018 - 09:03:51 CDT)
• water molecules around proteins
  • Axel Kohlmeyer (Fri Mar 12 2010 - 09:20:07 CST)
  • Florentina Tofoleanu (Thu Mar 11 2010 - 14:54:57 CST)
  • Axel Kohlmeyer (Thu Mar 11 2010 - 11:51:01 CST)
  • Axel Kohlmeyer (Wed Mar 10 2010 - 17:41:03 CST)
  • Florentina Tofoleanu (Wed Mar 10 2010 - 16:27:37 CST)
  • Axel Kohlmeyer (Sat Sep 19 2009 - 09:55:57 CDT)
  • Thomas Evangelidis (Sat Sep 19 2009 - 09:04:36 CDT)
  • Katherine Parra (Fri Sep 18 2009 - 12:04:04 CDT)
• Water molecules cling to protein in last frame
  • Yuan Xue (Sat Mar 02 2024 - 10:42:54 CST)
• water molecules in residue interaction
  • John Stone (Fri May 19 2006 - 11:50:07 CDT)
  • genie lfs (Thu May 18 2006 - 06:12:53 CDT)
• water molecules shooting during SMD + PDB WRITE ERROR
  • Nicholas Musolino (Tue Aug 03 2010 - 08:59:00 CDT)
  • koushik.k (Tue Aug 03 2010 - 06:45:25 CDT)
• Water molecules within a definite radius
  • Axel Kohlmeyer (Mon Nov 15 2010 - 18:34:23 CST)
  • Pat Yee (Mon Nov 15 2010 - 17:47:29 CST)
  • quantrum75 (Mon Nov 15 2010 - 17:14:39 CST)
  • Joshua Adelman (Mon Nov 15 2010 - 17:06:05 CST)
  • Axel Kohlmeyer (Mon Nov 15 2010 - 16:22:49 CST)
  • quantrum75 (Mon Nov 15 2010 - 15:26:18 CST)
• water numbering
  • Axel Kohlmeyer (Mon Aug 28 2006 - 11:41:53 CDT)
  • John Stone (Mon Aug 28 2006 - 11:33:18 CDT)
  • John Stone (Mon Aug 28 2006 - 11:28:06 CDT)
  • Mario Valle (Mon Aug 28 2006 - 11:24:30 CDT)
  • alexandra.marques_at_fc.up.pt (Mon Aug 28 2006 - 10:52:03 CDT)
  • alexandra.marques_at_fc.up.pt (Mon Aug 28 2006 - 06:50:33 CDT)
• water permeation across the channel
  • Nikhil Maroli (Sun Jan 08 2017 - 06:56:48 CST)
• water residence time
  • L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 15:56:53 CDT)
• Water segid split
  • Vermaas, Joshua (Thu Aug 04 2016 - 18:11:15 CDT)
  • Chitrak Gupta (Thu Aug 04 2016 - 18:15:02 CDT)
  • Chitrak Gupta (Thu Aug 04 2016 - 18:20:19 CDT)
  • José Gómez (Thu Aug 04 2016 - 16:50:03 CDT)
• water selection
  • John Stone (Thu Jul 13 2006 - 10:47:11 CDT)
  • John Stone (Thu Jul 13 2006 - 10:46:37 CDT)
  • Mgr. Lubos Vrbka (Thu Jul 13 2006 - 07:37:58 CDT)
  • Vlad Cojocaru (Thu Jul 13 2006 - 04:44:31 CDT)
  • Vlad Cojocaru (Thu Jul 13 2006 - 04:09:17 CDT)
• water sphere
  • John Stone (Wed Oct 08 2003 - 15:21:02 CDT)
  • John Stone (Tue Oct 07 2003 - 14:40:53 CDT)
  • John Stone (Tue Oct 07 2003 - 13:32:33 CDT)
  • John Stone (Tue Oct 07 2003 - 13:37:23 CDT)
  • srinivasa murthy (Tue Oct 07 2003 - 10:14:38 CDT)
  • srinivasa murthy (Fri Sep 26 2003 - 00:18:41 CDT)
  • John Stone (Wed Sep 24 2003 - 13:16:05 CDT)
  • srinivasa murthy (Wed Sep 24 2003 - 08:54:13 CDT)
  • John Stone (Tue Sep 23 2003 - 10:04:39 CDT)
  • srinivasa murthy (Tue Sep 23 2003 - 01:40:10 CDT)
• Water Sphere Solvation
  • Axel Kohlmeyer (Sun Oct 18 2009 - 09:25:30 CDT)
  • Peter Murphy (Tue Oct 13 2009 - 16:54:45 CDT)
• water sphere?
  • Daniel Kennedy (Tue Jul 17 2007 - 16:40:57 CDT)
• Water visualization
  • John Stone (Wed Apr 30 2014 - 22:07:48 CDT)
  • de Waal, Parker (Wed Apr 30 2014 - 20:46:31 CDT)
• Water within the minmax of protein
  • Thomas Evangelidis (Fri Nov 30 2007 - 09:14:11 CST)
  • Pavan Ghatty (Thu Nov 29 2007 - 21:08:06 CST)
  • Thomas Evangelidis (Thu Nov 29 2007 - 18:50:42 CST)
  • John Stone (Thu Nov 29 2007 - 10:30:54 CST)
  • Pavan Ghatty (Thu Nov 29 2007 - 09:17:51 CST)
• Water-mediated hydrogen bonds
  • ban arn (Tue Sep 28 2010 - 04:19:30 CDT)
• Waters enclosed in internal cavities
  • Vlad Cojocaru (Fri May 18 2012 - 06:26:55 CDT)
  • Vivek Sharma (Fri May 18 2012 - 06:23:52 CDT)
  • Wendy González (Fri May 18 2012 - 04:46:53 CDT)
• Waters per residue in ion channel
  • McGuire, Kelly (Sat Apr 28 2018 - 18:26:48 CDT)
• waters selection
  • Axel Kohlmeyer (Mon Apr 18 2011 - 16:20:51 CDT)
  • John Stone (Mon Apr 18 2011 - 15:58:07 CDT)
  • agustina_at_cabm.rutgers.edu (Mon Apr 18 2011 - 15:49:09 CDT)
• waters within hydrophobic pore of protein
  • Justin Gullingsrud (Mon Mar 01 2004 - 03:35:20 CST)
  • Axel Kohlmeyer (Mon Mar 01 2004 - 02:20:19 CST)
  • Satyavani Vemparala (Sun Feb 29 2004 - 10:45:49 CST)
• wavefront and VMD
  • Sandro Canavezzi de Abreu (Mon Nov 17 2008 - 11:44:29 CST)
  • Axel Kohlmeyer (Mon Nov 17 2008 - 09:12:55 CST)
  • Sandro Canavezzi de Abreu (Mon Nov 17 2008 - 07:58:08 CST)
  • John Stone (Fri Nov 14 2008 - 15:46:51 CST)
  • Sandro Canavezzi de Abreu (Wed Nov 12 2008 - 14:07:36 CST)
• Wavefront obj output
  • Andrew Dalke (Wed Mar 12 1997 - 15:19:48 CST)
  • David E. Jones (Wed Mar 12 1997 - 13:40:03 CST)
• Wavefront output of VMD
  • John Stone (Wed May 07 2003 - 11:09:12 CDT)
• Way to change ColorScale Method to single color gradient?
  • Bjoern Olausson (Thu Apr 08 2010 - 02:18:05 CDT)
  • Axel Kohlmeyer (Wed Apr 07 2010 - 08:43:19 CDT)
  • Bjoern Olausson (Wed Apr 07 2010 - 08:05:07 CDT)
  • Axel Kohlmeyer (Wed Apr 07 2010 - 06:08:23 CDT)
  • Bjoern Olausson (Wed Apr 07 2010 - 03:33:18 CDT)
• Web Portal NAMD Job Visualisation...possibilities?
  • John Stone (Wed Nov 03 2010 - 22:54:44 CDT)
  • Heidi Perrett (Wed Nov 03 2010 - 22:15:38 CDT)
• web script
  • John Stone (Fri Jan 27 2006 - 12:59:44 CST)
  • Jerry Ebalunode (Fri Jan 27 2006 - 12:50:20 CST)
  • John Stone (Mon Nov 01 2004 - 14:55:37 CST)
  • Osmany Guirola Cruz (Mon Nov 01 2004 - 10:48:42 CST)
  • John Stone (Mon Nov 01 2004 - 13:51:05 CST)
  • Osmany Guirola Cruz (Mon Nov 01 2004 - 06:49:53 CST)
  • John Stone (Fri Oct 29 2004 - 19:08:40 CDT)
  • Osmany Guirola Cruz (Fri Oct 29 2004 - 16:20:05 CDT)
• Web-based Flash/Quicktime 3-D VMD/Tachyon renderings of PDB structures
  • John Stone (Wed Sep 23 2009 - 15:45:30 CDT)
• Webinar on VMD's use of GPUs to accelerate MD visualization and analysis
  • Ali Alizadeh (Mon Feb 24 2014 - 10:07:36 CST)
  • John Stone (Mon Feb 24 2014 - 08:57:40 CST)
  • Ali Alizadeh (Mon Feb 24 2014 - 02:00:02 CST)
  • John Stone (Mon Feb 17 2014 - 16:15:03 CST)
• Webpdb crashing
  • John Stone (Sun Apr 18 2004 - 19:48:23 CDT)
  • John Stone (Fri Apr 16 2004 - 13:27:44 CDT)
  • Josh Ward (Fri Apr 16 2004 - 11:43:18 CDT)
  • Brian Bennion (Fri Apr 16 2004 - 13:13:06 CDT)
  • Josh Ward (Fri Apr 16 2004 - 11:57:58 CDT)
  • Josh Ward (Fri Apr 16 2004 - 11:59:18 CDT)
  • Brian Bennion (Fri Apr 16 2004 - 11:22:50 CDT)
  • Brian Bennion (Fri Apr 16 2004 - 11:48:55 CDT)
  • Josh Ward (Fri Apr 16 2004 - 09:24:41 CDT)
• webpdb load problem
  • John Stone (Tue Apr 12 2011 - 14:09:33 CDT)
  • tiago sobreira (Tue Apr 12 2011 - 13:48:29 CDT)
• Weighted RMS fit bug
  • John Stone (Thu Feb 26 2009 - 14:25:06 CST)
  • Jumper, John (Thu Feb 26 2009 - 12:21:15 CST)
• weird atomselect problem
  • Dan Wright (Mon Aug 01 2005 - 15:19:03 CDT)
  • John Stone (Mon Aug 01 2005 - 14:31:20 CDT)
  • Samuel Flores (Mon Aug 01 2005 - 11:48:07 CDT)
  • Dan Wright (Mon Aug 01 2005 - 08:56:56 CDT)
  • Samuel Flores (Sun Jul 31 2005 - 19:37:36 CDT)
• weird behavior with RMSD
  • Irene Newhouse (Tue Sep 23 2008 - 16:21:02 CDT)
• Weird bonds in water box/sphere
  • Sujata Sovani (Fri Sep 24 2010 - 18:51:27 CDT)
• Weird lighting in CAVE
  • John Stone (Thu Aug 26 2004 - 14:16:51 CDT)
  • by way of Jeroen Akershoek (Wed Aug 25 2004 - 03:24:00 CDT)
• Welcome to vmd-l
  • Josh Vermaas (Fri Jul 10 2015 - 14:09:21 CDT)
  • Kyle Mills (Fri Jul 10 2015 - 13:08:48 CDT)
• Welcome to VMD-L!
  • T. Chyau Liang, Ph.D. (Wed Jan 08 1997 - 15:05:28 CST)
  • Andrew Dalke (Thu Dec 19 1996 - 11:40:38 CST)
• WG: vmd and proxy settings
  • John Stone (Wed Mar 02 2016 - 09:33:13 CST)
  • Greipel.Joachim_at_mh-hannover.de (Wed Mar 02 2016 - 03:58:28 CST)
• WG: VMD mismatch between CUDA runtime and GPU driver
  • John Stone (Thu Jul 18 2013 - 10:28:47 CDT)
  • Greipel.Joachim_at_mh-hannover.de (Thu Jul 18 2013 - 02:24:18 CDT)
• WG: zoom and focus on on a selection
  • Daniel Möller (Tue Mar 14 2017 - 15:14:50 CDT)
• What applications are the cest?
  • Nick I (Tue Oct 25 2005 - 11:43:17 CDT)
  • Nick I (Mon Aug 15 2005 - 15:01:29 CDT)
• What does pbc get -now do
  • Chitrak Gupta (Sun Oct 07 2018 - 12:40:21 CDT)
  • Stefan Doerr (Sun Oct 07 2018 - 12:06:37 CDT)
  • Mayank (Sun Oct 07 2018 - 09:36:41 CDT)
• What does Stride need to draw SS?
  • John Stone (Thu Aug 09 2007 - 17:36:23 CDT)
  • Jim Pfaendtner (Thu Aug 09 2007 - 16:49:58 CDT)
• what is difference between "TOTAL", Q=80=9cTOTAL2=22_and_=22POTENTIAL=22_in_the_VMD_plugin_NAMD_Plo?= t?
  • Pawel Kedzierski (Mon Nov 09 2015 - 04:09:48 CST)
• what is difference between "TOTAL", “TOTAL2" and "POTENTIAL" in the VMD plugin NAMD Plot?
  • sunyeping (Mon Nov 09 2015 - 02:22:23 CST)
• What is missing when using VMDSIMPLEGRAPHICS 1?
  • Dallas B. Warren (Fri May 13 2005 - 21:31:43 CDT)
  • John Stone (Fri May 13 2005 - 02:30:27 CDT)
  • Dallas B. Warren (Fri May 13 2005 - 02:07:05 CDT)
  • John Stone (Fri May 13 2005 - 01:18:00 CDT)
  • Dallas B. Warren (Thu May 12 2005 - 23:13:20 CDT)
• What is revbonds in cgtools.tcl?
  • Kirby Vandivort (Thu Jun 13 2013 - 09:24:54 CDT)
  • WuChaofu (Thu May 30 2013 - 08:16:44 CDT)
• what is the center of rotation for the transformation matrix obtained by "measure fit" command?
  • Josh Vermaas (Fri Jun 27 2014 - 10:15:58 CDT)
  • James Chen (Thu Jun 26 2014 - 16:27:43 CDT)
• What is the correct way of using "pbcwrap" with "atomselect [within]"?
  • Axel Kohlmeyer (Tue Feb 02 2016 - 02:07:21 CST)
  • Monika Madhavi (Tue Feb 02 2016 - 01:34:46 CST)
• What is the influence of PBC on measure bond?
  • John Stone (Tue Jun 05 2007 - 10:12:00 CDT)
  • Philipp Schoen1 (Tue Jun 05 2007 - 09:30:03 CDT)
• What is the reasonable GPU usage when running simulation in VMD?
  • João Ribeiro KS (Thu Nov 17 2016 - 08:41:03 CST)
  • jrhau lung (Thu Nov 17 2016 - 06:47:43 CST)
  • jrhau lung (Wed Nov 16 2016 - 23:58:37 CST)
• what is wrong with this script?
  • Jérôme Hénin (Wed Mar 22 2006 - 01:31:13 CST)
  • Sergio Anis (Tue Mar 21 2006 - 18:52:51 CST)
  • lily jin (Tue Mar 21 2006 - 16:25:12 CST)
• What occupancy at the Hbond plugin mean?
  • Dong Luo (Tue Feb 09 2010 - 10:21:29 CST)
  • Itamar Kass (Tue Feb 09 2010 - 05:15:27 CST)
• What unit system does VMD use?
  • Axel Kohlmeyer (Mon Sep 25 2006 - 12:00:07 CDT)
  • John Stone (Sat Sep 23 2006 - 21:27:44 CDT)
  • Axel Kohlmeyer (Sat Sep 23 2006 - 21:03:01 CDT)
  • Axel Kohlmeyer (Fri Sep 22 2006 - 18:29:23 CDT)
  • Dr. Seth Olsen (Thu Sep 21 2006 - 21:50:58 CDT)
  • Dr. Seth Olsen (Thu Sep 21 2006 - 21:38:01 CDT)
  • Peter Freddolino (Thu Sep 21 2006 - 21:37:27 CDT)
  • Dr. Seth Olsen (Thu Sep 21 2006 - 21:30:53 CDT)
  • Dr. Seth Olsen (Thu Sep 21 2006 - 21:25:09 CDT)
  • Axel Kohlmeyer (Thu Sep 21 2006 - 19:41:58 CDT)
  • Dr. Seth Olsen (Thu Sep 21 2006 - 19:21:09 CDT)
• what's the Letter in figure caption meaning of TIME-LINE 2nd structure present?
  • Barry Isralewitz (Mon May 07 2012 - 12:32:42 CDT)
  • santhu kumar (Mon May 07 2012 - 11:10:40 CDT)
  • Albert (Mon May 07 2012 - 10:07:43 CDT)
• What's the main reason of the structure or function of a protein?
  • Andrew Dalke (Thu Mar 06 2008 - 00:25:03 CST)
  • Fei Chen (Wed Mar 05 2008 - 19:48:49 CST)
  • Andrew Dalke (Wed Mar 05 2008 - 16:32:42 CST)
  • Fei Chen (Wed Mar 05 2008 - 07:53:18 CST)
• what's the unit for color scale data range?
  • John Stone (Fri Jul 20 2007 - 11:23:46 CDT)
  • Leonardo Trabuco (Thu Jul 19 2007 - 15:35:27 CDT)
  • Insight II (Thu Jul 19 2007 - 15:09:17 CDT)
• What's wrong with my VMD
  • John Stone (Fri Oct 14 2005 - 15:51:06 CDT)
  • Luis Rosales (Fri Oct 14 2005 - 00:42:19 CDT)
  • Dallas B. Warren (Thu Oct 13 2005 - 21:02:12 CDT)
  • Yang Zhenyu (Thu Oct 13 2005 - 09:13:59 CDT)
• when i use imd connect in vmd,i can not type words in hostname textbox
  • ÕŠΪ (Mon Sep 05 2005 - 10:22:54 CDT)
• When should I use NTER and NNEU as a patch?
  • Daniel Fellner (Wed Oct 12 2022 - 01:38:40 CDT)
  • Derman BaÅŸtürk (Tue Oct 11 2022 - 23:38:26 CDT)
• when will 1.9.2 be released?
  • Albert (Sun May 25 2014 - 12:12:31 CDT)
• where are the files provided with MDFF TUTORIAL?
  • Fotis Baltoumas (Mon May 11 2015 - 01:23:30 CDT)
  • sunyeping (Sun May 10 2015 - 22:12:03 CDT)
• where can I download Tachyon version 0.98.10 ?
  • Cun Zhang (Wed Aug 18 2010 - 00:36:33 CDT)
  • John Stone (Mon Aug 16 2010 - 12:54:37 CDT)
  • Ian Stokes-Rees (Mon Aug 16 2010 - 12:03:30 CDT)
  • John Stone (Mon Aug 16 2010 - 11:08:36 CDT)
  • Cun Zhang (Mon Aug 16 2010 - 04:02:55 CDT)
  • Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
  • Axel Kohlmeyer (Sun Aug 15 2010 - 04:28:42 CDT)
  • Cun Zhang (Sun Aug 15 2010 - 03:16:45 CDT)
  • John Stone (Sat Aug 14 2010 - 23:10:51 CDT)
  • Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
  • Cun Zhang (Fri Aug 13 2010 - 23:06:19 CDT)
• Where can I download VMD alpha version
  • Ajasja LjubetiÄ� (Sat Jan 15 2011 - 11:05:34 CST)
  • Axel Kohlmeyer (Sat Jan 15 2011 - 10:45:14 CST)
  • Nima Nouri (Sat Jan 15 2011 - 09:30:16 CST)
• where can I find the parameter file for chlorophenols?
  • ¶¡êÏ (Sun May 24 2015 - 21:43:04 CDT)
• Where can I read the specifications on molecular file formats?
  • John Stone (Thu Feb 12 2004 - 00:51:08 CST)
  • Hess, Bret (Wed Feb 11 2004 - 22:46:17 CST)
• Where did I put those angles?
  • Cesar Luis Avila (Thu Aug 31 2006 - 19:17:14 CDT)
  • Marcos Sotomayor (Thu Aug 31 2006 - 18:02:11 CDT)
  • John Stone (Thu Aug 31 2006 - 17:57:18 CDT)
  • Axel Kohlmeyer (Thu Aug 31 2006 - 17:51:43 CDT)
  • Cesar Luis Avila (Thu Aug 31 2006 - 17:16:01 CDT)
• Where found QwikMD 2.0?
  • John Stone (Tue Nov 09 2021 - 16:17:55 CST)
  • Georcki Ropon (Sat Nov 06 2021 - 23:28:08 CDT)
• where is option "Image Smoothing"?
  • Axel Kohlmeyer (Wed Jul 26 2006 - 06:31:32 CDT)
  • Hu Zhongqiao (Wed Jul 26 2006 - 00:30:07 CDT)
• where is the "move" procedure in the toturial
  • Axel Kohlmeyer (Mon Jan 28 2008 - 09:08:25 CST)
  • Justin JEONG (Sun Jan 27 2008 - 16:32:03 CST)
• Where is the memory leakage?
  • Guo Zhi (Sun Apr 15 2007 - 01:45:32 CDT)
  • John Stone (Sun Apr 15 2007 - 01:14:52 CDT)
  • Guo Zhi (Sun Apr 15 2007 - 00:54:48 CDT)
• Where is the Tracker Menu
  • John Stone (Tue May 13 2003 - 21:15:17 CDT)
  • Stephen P. Molnar, Ph.D. (Tue May 13 2003 - 18:46:22 CDT)
• Where should I put script file?
  • Jérôme Hénin (Fri Nov 12 2004 - 17:10:07 CST)
  • Chung, Dong Hoon (Fri Nov 12 2004 - 14:02:09 CST)
• Where to download Hbond plugin
  • Ajasja LjubetiÄ� (Sun Oct 31 2010 - 05:50:10 CDT)
  • surendra jain (Sun Oct 31 2010 - 03:27:16 CDT)
  • Axel Kohlmeyer (Sat Oct 30 2010 - 11:01:01 CDT)
  • surendra jain (Sat Oct 30 2010 - 07:52:15 CDT)
• Where to find cholesterol ester in PDB format
  • Peter Engelhardt (Tue Mar 06 2007 - 03:56:26 CST)
• Where to find top_all36_cgenff.rtf/prm version 4.5?
  • Francesco Pietra (Wed Jan 19 2022 - 08:39:20 CST)
• Where to save the script
  • Funzo_at_seznam.cz (Mon Aug 06 2018 - 04:02:58 CDT)
  • Ashar Malik (Sun Aug 05 2018 - 20:38:47 CDT)
  • Funzo_at_seznam.cz (Sun Aug 05 2018 - 10:38:14 CDT)
• where's the download link for one specific plugin?
  • Peter Freddolino (Wed Jun 07 2006 - 13:27:36 CDT)
  • JunJun Liu (Wed Jun 07 2006 - 12:26:41 CDT)
• wheris sculptor.tcl
  • Christian Wohlschlager (Fri Sep 24 2010 - 05:39:50 CDT)
• Which drawing method is used in the picture?
  • Alan Wilter Sousa da Silva (Wed Apr 10 2002 - 10:20:05 CDT)
  • John Stone (Tue Apr 09 2002 - 15:50:12 CDT)
  • Andrew Dalke (Tue Apr 09 2002 - 15:04:19 CDT)
  • John Stone (Tue Apr 09 2002 - 15:01:03 CDT)
  • Anna Aagaard (Tue Apr 09 2002 - 14:40:17 CDT)
• which files to make a spatial grid?
  • Axel Kohlmeyer (Mon Apr 16 2007 - 19:46:08 CDT)
  • Philipp Schoen1 (Mon Apr 16 2007 - 07:39:44 CDT)
• Which function for animate speed
  • Samuele Salis (Fri Jun 27 2014 - 13:29:14 CDT)
  • Josh Vermaas (Fri Jun 27 2014 - 10:52:24 CDT)
  • Rohan Mehta (Fri Jun 27 2014 - 05:39:53 CDT)
  • Samuele Salis (Fri Jun 27 2014 - 04:38:36 CDT)
• Which Linux distribution works best with Quadro cards?
  • John Hodrien (Tue Jun 04 2013 - 08:40:47 CDT)
  • Joshua Anderson (Tue Jun 04 2013 - 06:40:06 CDT)
  • Alexander Balaeff (Tue Jun 04 2013 - 01:39:26 CDT)
• which model in pdb vill VMD present?
  • John Stone (Tue Jan 13 2009 - 14:03:58 CST)
  • Steven W (Wed Jan 07 2009 - 12:21:59 CST)
• which nForce to use?
  • John Stone (Tue Jan 25 2005 - 12:54:35 CST)
  • Eugen Leitl (Tue Jan 25 2005 - 03:23:18 CST)
• Which phosphoserine patch to use: SP1 or SP2?
  • Devanand T (Wed Jul 27 2016 - 05:26:07 CDT)
  • Devanand T (Wed Jul 27 2016 - 02:33:10 CDT)
• which POPC Bilayer is better to start?
  • Akshay Patny (Wed Sep 20 2006 - 16:40:07 CDT)
• which version!?
  • John Stone (Tue Jan 19 2016 - 10:16:49 CST)
  • Reza Shakouri (Tue Jan 19 2016 - 09:29:36 CST)
• Which VMD AND NAMD should install
  • John Stone (Tue Sep 22 2015 - 14:07:17 CDT)
  • Nikhil Maroli (Sat Sep 19 2015 - 01:57:30 CDT)
• Which VMD executible to use?
  • Axel Kohlmeyer (Tue Aug 08 2006 - 10:54:22 CDT)
  • Jeffrey A Tibbitt (Tue Aug 08 2006 - 10:06:44 CDT)
• which water models are inbult in namd? can I use SPCE if yes how?
  • Peter Freddolino (Wed Nov 16 2016 - 08:57:32 CST)
  • Raviteja Kurapati (Wed Nov 16 2016 - 06:18:33 CST)
• White background
  • Joshua D. Moore (Mon Jul 25 2005 - 17:03:08 CDT)
  • John Stone (Mon Jul 25 2005 - 13:13:30 CDT)
  • Shirley Hui (Mon Jul 25 2005 - 13:08:28 CDT)
  • John Stone (Mon Jul 29 2002 - 11:01:12 CDT)
• Why are all carbon atoms lumped into C in the Name category in the colors dialog?
  • Axel Kohlmeyer (Fri Nov 29 2013 - 19:13:50 CST)
  • Andrew DeYoung (Fri Nov 29 2013 - 11:37:41 CST)
• why atom positions are reset after readpsf, coordpdb commands?
  • Jim Phillips (Fri Dec 17 2010 - 10:58:39 CST)
  • Erik Nordgren (Thu Dec 16 2010 - 13:25:22 CST)
  • ºÎع»Ô (Wed Dec 15 2010 - 03:37:53 CST)
• why atomselection "protein" can not choose all the protein atoms with different alternate locations?
  • John Stone (Tue Oct 14 2008 - 11:43:43 CDT)
  • Lan Hua (Tue Oct 14 2008 - 11:55:14 CDT)
  • Axel Kohlmeyer (Mon Oct 13 2008 - 18:23:35 CDT)
  • Lan Hua (Mon Oct 13 2008 - 16:49:07 CDT)
• Why can VMD not be opened?
  • sunyeping (Tue Sep 29 2015 - 09:40:21 CDT)
  • John Stone (Mon Sep 28 2015 - 09:14:28 CDT)
  • sunyeping (Sun Sep 27 2015 - 13:03:32 CDT)
  • sunyeping (Sun Sep 27 2015 - 12:07:50 CDT)
• Why do the coordinates of my atoms change when writing to a pdb file?
  • Peter Freddolino (Sun Mar 21 2021 - 16:01:32 CDT)
  • Ramon Mendoza Uriarte (Sun Mar 21 2021 - 15:58:22 CDT)
  • Peter Freddolino (Sun Mar 21 2021 - 10:36:48 CDT)
  • Ramon Mendoza Uriarte (Sun Mar 21 2021 - 00:57:03 CDT)
  • Axel Kohlmeyer (Sun Mar 21 2021 - 00:18:28 CDT)
  • Ramon Mendoza Uriarte (Sat Mar 20 2021 - 23:15:56 CDT)
• Why does dipole moment depends so strongly on constraints?
  • Dawid das (Tue Jan 13 2015 - 08:57:53 CST)
• Why does lipid move out of water box
  • Axel Kohlmeyer (Tue Jan 09 2007 - 14:13:08 CST)
  • Nitin Bhardwaj (Tue Jan 09 2007 - 11:29:24 CST)
• why does VMD load dcd file so slowly?
  • Axel Kohlmeyer (Sun May 26 2013 - 01:24:16 CDT)
  • yp sun (Sat May 25 2013 - 20:40:46 CDT)
• why does VMD quit automatically?
  • Andrew Dalke (Wed Mar 05 1997 - 11:50:27 CST)
  • Andrew Dalke (Wed Mar 05 1997 - 08:58:34 CST)
  • Qiang Liu (Tue Mar 04 1997 - 18:04:36 CST)
• why electrostatic interaction energy increases with the increase of cutoff using namdenergy
  • Lan Hua (Wed Mar 17 2010 - 21:18:55 CDT)
• Why get an original watch?
  • Leticia Larkin (Wed Apr 30 2008 - 20:14:01 CDT)
• why huge positive vdw energy from namdenergy plugin
  • Lan Hua (Mon Mar 15 2010 - 18:02:56 CDT)
• Why is the 'antialias' option is grey?
  • MyLinkka (Wed May 20 2009 - 07:31:01 CDT)
  • John Stone (Wed May 20 2009 - 06:58:21 CDT)
  • MyLinkka (Wed May 20 2009 - 05:37:47 CDT)
• why mdff griddx command cannot generate .dx file
  • sunyeping (Fri Aug 28 2015 - 03:46:48 CDT)
• Why NAMD??? a general question
  • Akshata Rudrapatna (Sun Feb 15 2015 - 13:01:52 CST)
  • M K (Sun Feb 15 2015 - 05:49:19 CST)
• Why the 4ake-target_autopsf.situs can not be generated in MDFF tutorial?
  • Ryan McGreevy (Fri May 29 2015 - 14:18:19 CDT)
  • sunyeping (Mon May 11 2015 - 02:33:43 CDT)
• Why the restype color of Gly residue in protein is green (polar)?
  • Daniel Marin (Tue May 24 2022 - 13:48:54 CDT)
  • John Stone (Tue May 24 2022 - 08:40:01 CDT)
  • Daniel Marin (Tue May 24 2022 - 04:28:35 CDT)
• why the same operation vary so large
  • Peter Freddolino (Mon Mar 27 2006 - 09:41:24 CST)
  • Shulin Zhuang (Mon Mar 27 2006 - 08:31:20 CST)
• Why the win_version of vmd1.86 can not change to python interpreter?
  • Axel Kohlmeyer (Sat Aug 01 2009 - 09:30:12 CDT)
  • Aurum Bai (Sat Aug 01 2009 - 08:21:06 CDT)
• why tutorial cannot be played?
  • John Stone (Tue Jan 14 2014 - 09:58:53 CST)
  • chandrakala gowda (Fri Dec 27 2013 - 16:16:40 CST)
  • Albert (Fri Dec 27 2013 - 15:51:08 CST)
  • Axel Kohlmeyer (Fri Dec 27 2013 - 15:19:55 CST)
  • Albert (Fri Dec 27 2013 - 14:32:17 CST)
• Why vmd can't connect vrpn server in windows xp?
  • John Stone (Thu Jul 28 2005 - 12:49:48 CDT)
  • leepersonpp (Wed Jul 27 2005 - 21:55:01 CDT)
• why vmd cannot load situs type file in MDFF?
  • Ryan McGreevy (Wed Aug 12 2015 - 10:28:57 CDT)
  • Josh Vermaas (Wed Aug 12 2015 - 08:56:53 CDT)
  • sunyeping (Tue Aug 11 2015 - 10:19:53 CDT)
• why vmd cannot load the dcd trajectory?
  • John Stone (Tue Jan 10 2017 - 07:23:29 CST)
  • sunyeping (Tue Jan 10 2017 - 01:06:08 CST)
• Why wrapped and unwrapped trajectories show different energies over the time?
  • zeynab hoseyni (Sat Apr 23 2016 - 09:32:06 CDT)
• width for triangle
  • Axel Kohlmeyer (Wed Jul 07 2004 - 09:06:32 CDT)
  • Harindar Keer (Tue Jul 06 2004 - 20:41:58 CDT)
• wildcards in atomselect command
  • Eduard Schreiner (Fri Jan 26 2007 - 10:13:27 CST)
  • Axel Kohlmeyer (Fri Jan 26 2007 - 10:03:14 CST)
  • Himanshu Khandelia (Fri Jan 26 2007 - 05:47:02 CST)
• WIN64 build
  • Ajasja LjubetiÄ� (Fri Mar 12 2010 - 07:46:55 CST)
• Win64 version
  • John Stone (Wed Sep 06 2006 - 15:10:46 CDT)
  • Dan Strahs (Wed Sep 06 2006 - 14:51:10 CDT)
• window size
  • Chang, Christopher (Thu Feb 10 2005 - 17:07:31 CST)
  • John Stone (Thu Feb 10 2005 - 15:23:39 CST)
  • Guanglei Cui (Thu Feb 10 2005 - 15:10:21 CST)
• windows 98/ vmd14a2.exe & vmd14b1.exe
  • John Stone (Tue Oct 26 1999 - 15:35:34 CDT)
  • John Stone (Fri Oct 22 1999 - 13:12:52 CDT)
  • francy_at_mvcch3.unica.it (Fri Oct 22 1999 - 12:52:43 CDT)
• Windows build newer than 1.9.3
  • Stefan Boresch (Tue Mar 05 2019 - 02:39:54 CST)
  • Ashar Malik (Mon Mar 04 2019 - 03:03:59 CST)
  • Stefan Boresch (Mon Mar 04 2019 - 01:54:58 CST)
• Windows Server 2019 support issue of VMD and NAMD
  • Gawtak Kim (Mon Nov 09 2020 - 17:27:41 CST)
  • John Stone (Sun Nov 08 2020 - 21:24:44 CST)
  • Gawtak Kim (Sun Nov 08 2020 - 20:44:53 CST)
• windows usage question
  • Ahmet Bakan (Wed Nov 20 2013 - 10:14:41 CST)
  • Thomas C. Bishop (Tue Nov 19 2013 - 12:26:47 CST)
• windows version of VMD
  • John Stone (Mon Apr 09 2007 - 01:01:35 CDT)
  • Zheng Hu (Mon Apr 09 2007 - 00:20:11 CDT)
  • John Stone (Mon Mar 26 2007 - 11:57:37 CDT)
  • zsinkala_at_mtsu.edu (Mon Mar 26 2007 - 07:21:19 CDT)
  • Axel Kohlmeyer (Sun Mar 25 2007 - 16:46:41 CDT)
  • Zheng Hu (Sun Mar 25 2007 - 15:19:48 CDT)
  • John Stone (Sat Mar 24 2007 - 17:11:33 CDT)
  • Zheng Hu (Sat Mar 24 2007 - 17:03:27 CDT)
  • John Stone (Sat Mar 24 2007 - 17:06:09 CDT)
  • Zheng Hu (Sat Mar 24 2007 - 16:39:43 CDT)
  • John Stone (Fri Mar 23 2007 - 17:17:31 CDT)
  • Zheng Hu (Fri Mar 23 2007 - 16:35:29 CDT)
• Windows version, system out of memory
  • John Stone (Wed May 20 2020 - 02:36:33 CDT)
  • Dallas Warren (Wed May 20 2020 - 00:29:08 CDT)
  • John Stone (Tue May 19 2020 - 21:53:15 CDT)
  • John Stone (Tue May 19 2020 - 21:50:14 CDT)
  • Dallas Warren (Tue May 19 2020 - 18:30:17 CDT)
  • Chris Broomell (Tue May 19 2020 - 16:39:41 CDT)
  • John Stone (Tue May 19 2020 - 15:18:13 CDT)
  • Dallas Warren (Mon May 18 2020 - 02:39:32 CDT)
• Windows version: Loading/writing files
  • bo liu (Mon Oct 13 2008 - 09:50:41 CDT)
  • Alexander A. Vakhrushev (Mon Oct 13 2008 - 08:49:21 CDT)
  • Neelanjana Sengupta (Mon Oct 13 2008 - 07:53:41 CDT)
• Windows VMD 1.9.4a Version Failing
  • John Stone (Fri Jan 15 2021 - 15:25:35 CST)
  • Minh Ho (Fri Jan 15 2021 - 15:21:52 CST)
  • Emma Wu (Thu Jan 07 2021 - 19:43:27 CST)
  • John Stone (Thu Dec 31 2020 - 11:08:43 CST)
  • Daniel Fellner (Mon Dec 28 2020 - 20:05:45 CST)
  • Emma Wu (Sun Dec 27 2020 - 19:16:24 CST)
• Windows vs. Linux
  • John Stone (Wed Jul 17 2002 - 09:43:32 CDT)
• Windows XP and Eye3D glasses
  • John Stone (Tue Aug 13 2002 - 17:01:37 CDT)
  • John Stone (Tue Aug 13 2002 - 15:29:37 CDT)
  • Jill Vickery (Tue Aug 13 2002 - 11:53:48 CDT)
• Windows XP refresh rate bug/stereo, information page
  • John Stone (Tue Oct 08 2002 - 17:25:08 CDT)
• Windows XP SP2 and some OpenGL drivers....
  • John Stone (Wed Aug 11 2004 - 15:35:03 CDT)
• Windows/Cannot generate .dx file!
  • John Stone (Wed Jan 17 2007 - 14:16:35 CST)
  • L. Michel Espinoza-Fonseca (Mon Jan 15 2007 - 11:24:43 CST)
  • Georgios Villias (Mon Jan 15 2007 - 10:12:43 CST)
• winvmd error
  • John Stone (Mon Mar 28 2005 - 10:24:50 CST)
  • Paul Schlesinger (Mon Mar 21 2005 - 12:09:17 CST)
• winvmd error during calculation
  • Axel Kohlmeyer (Sat Apr 14 2007 - 09:10:39 CDT)
  • John Stone (Sat Apr 14 2007 - 00:50:21 CDT)
  • lanhua (Fri Apr 13 2007 - 23:17:54 CDT)
• winvmd stopped working
  • Ashar Malik (Fri Jun 02 2017 - 18:59:03 CDT)
  • Fernando Bonilla Millan (Fri Jun 02 2017 - 16:40:26 CDT)
• within and exwithin macro
  • Axel Kohlmeyer (Tue Aug 07 2007 - 15:18:02 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Aug 07 2007 - 15:52:50 CDT)
  • nmichaud_at_jhu.edu (Tue Aug 07 2007 - 11:54:20 CDT)
  • Axel Kohlmeyer (Tue Aug 07 2007 - 08:46:49 CDT)
  • Axel Kohlmeyer (Tue Aug 07 2007 - 08:26:18 CDT)
  • Èùìáò Åõáããåëéäçò (Tue Aug 07 2007 - 08:34:14 CDT)
  • John Stone (Tue Aug 07 2007 - 00:06:53 CDT)
  • Èùìáò Åõáããåëéäçò (Mon Aug 06 2007 - 16:52:34 CDT)
• within command
  • Maxim Belkin (Fri Jan 23 2015 - 16:38:45 CST)
  • Josh Vermaas (Fri Jan 23 2015 - 15:40:38 CST)
  • Thomas C. Bishop (Fri Jan 23 2015 - 15:57:04 CST)
  • Maxim Belkin (Fri Jan 23 2015 - 14:44:27 CST)
  • Bennion, Brian (Fri Jan 23 2015 - 14:31:44 CST)
  • Axel Kohlmeyer (Fri Jan 23 2015 - 14:05:27 CST)
  • Thomas C. Bishop (Fri Jan 23 2015 - 13:04:10 CST)
• Within X1 of Y but not within X2 of Y
  • Jérôme Hénin (Mon Apr 24 2017 - 09:12:33 CDT)
  • Kamps, M. (Mon Apr 24 2017 - 06:28:46 CDT)
• within, used with pbcwrap
  • John Stone (Sat Apr 11 2009 - 09:36:08 CDT)
  • Olaf Lenz (Sat Apr 11 2009 - 07:15:51 CDT)
  • Neelanjana Sengupta (Sat Apr 11 2009 - 00:49:22 CDT)
  • Axel Kohlmeyer (Fri Apr 10 2009 - 09:03:36 CDT)
  • John Stone (Fri Apr 10 2009 - 09:14:00 CDT)
  • Neelanjana Sengupta (Fri Apr 10 2009 - 06:35:19 CDT)
• word too long
  • John Stone (Wed Jun 16 2004 - 09:08:08 CDT)
  • Hua Wong (Wed Jun 16 2004 - 03:40:48 CDT)
• Work around and problem with 1.7 for MacOS X
  • Tyler Heibeck (Wed Aug 08 2001 - 11:30:20 CDT)
  • John Stone (Tue Aug 07 2001 - 21:35:41 CDT)
  • Tyler Heibeck (Mon Aug 06 2001 - 15:17:57 CDT)
• workaround for DynamicBonds
  • Georg Spiekermann (Mon Aug 16 2010 - 10:12:10 CDT)
  • John Stone (Mon Aug 16 2010 - 11:05:28 CDT)
• working on VMD for Analysis..
  • maria khan (Sat Jan 14 2017 - 13:55:01 CST)
• working out the output files from Timeline
  • jing liang (Wed Jan 24 2024 - 23:58:11 CST)
  • jing liang (Mon Jan 22 2024 - 11:44:48 CST)
• Working with trajectory and updating frames dependents on current frame
  • Vermaas, Josh (Thu Jul 18 2024 - 15:56:01 CDT)
  • Roni Saiba (Thu Jul 18 2024 - 14:26:32 CDT)
  • Laura X Sepulveda (Thu Jul 18 2024 - 12:52:06 CDT)
• working with VMD
  • Ashar Malik (Sat Jan 14 2017 - 11:59:46 CST)
  • maria khan (Sat Jan 14 2017 - 07:50:04 CST)
  • maria khan (Sat Jan 14 2017 - 07:43:43 CST)
• Workshop - Computational Molecular Physics of Non-Bonded Bio-Molecular Interactions
  • MARK PLUMMER (Mon Jun 11 2012 - 17:16:47 CDT)
• Workshop for Computational Chemistry and Physics
  • MARK PLUMMER (Wed Jun 20 2012 - 15:20:40 CDT)
• Workshop In Aspen Colorado -
  • MARK PLUMMER (Mon Jun 04 2012 - 15:15:32 CDT)
• Workshop on Computational Biophysics, Urbana, IL: Application Deadline March 10th
  • João Ribeiro KS (Sat Mar 04 2017 - 15:55:57 CST)
• Workshop on Free Energy calculations in Muenster March 11-13 2020
  • Vlad Cojocaru (Fri Jan 17 2020 - 03:32:53 CST)
• Workshop on GPU Programming for Molecular Modeling, August 2-4, 2013, in Urbana, Illinois
  • David Brandon (Wed Jun 12 2013 - 11:03:08 CDT)
• Workshop on GPU Programming for Molecular Modeling, August 6-8, 2010, at the Beckman Institute in Urbana, Illinois
  • TCBG Workshops (Fri Jun 11 2010 - 17:28:26 CDT)
• Workshop on GPU Programming for Molecular Modeling, in Urbana, Illinois, July 22-24, 2014
  • David Brandon (Fri Apr 18 2014 - 16:42:16 CDT)
• Workshop on MD simulation software design
  • Giacomo Fiorin (Tue Mar 21 2017 - 13:44:34 CDT)
• Workshop on Scientific Software Development at ICTP in Trieste
  • Axel Kohlmeyer (Thu Nov 01 2012 - 09:39:46 CDT)
• Workshop on Very Large System Simulation, Urbana, IL, August 11-15, 2014
  • David Brandon (Sat May 17 2014 - 18:26:44 CDT)
• wrap ions
  • Brian Kidd (Wed Apr 27 2005 - 11:39:35 CDT)
• Wrap only whole molecules
  • Jim Phillips (Fri Jul 27 2007 - 16:48:26 CDT)
  • Axel Kohlmeyer (Fri Jul 27 2007 - 13:26:06 CDT)
  • zhenlong li (Fri Jul 27 2007 - 13:00:54 CDT)
• Wrap PBC inside unit cellâ€�
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:27:20 CDT)
  • Axel Kohlmeyer (Tue Aug 23 2011 - 09:26:09 CDT)
  • Nima Nouri (Mon Aug 22 2011 - 18:56:25 CDT)
  • Casey Johnson (Mon Aug 22 2011 - 17:54:41 CDT)
• Wrap with PBCTools
  • Kevin C Chan (Tue Mar 08 2016 - 21:49:34 CST)
  • Josh Vermaas (Tue Mar 08 2016 - 09:59:30 CST)
  • Kevin C Chan (Tue Mar 08 2016 - 03:20:46 CST)
• wrapall visualization
  • Prof. Eddie (Tue Jun 12 2012 - 12:03:39 CDT)
• wraping creates extra bonds!
  • zeynab hoseyni (Mon Jun 14 2021 - 00:38:35 CDT)
  • Peter Freddolino (Sun Jun 13 2021 - 19:22:32 CDT)
  • zeynab hoseyni (Sun Jun 13 2021 - 14:49:48 CDT)
• wraping two chains from a simulation
  • John Stone (Mon May 15 2006 - 12:39:30 CDT)
  • L. Michel Espinoza-Fonseca (Fri May 12 2006 - 02:40:59 CDT)
• wrapper for VMD to read compressed .xz files
  • Axel Kohlmeyer (Fri Jan 31 2014 - 17:48:58 CST)
  • John Stone (Fri Jan 31 2014 - 16:43:14 CST)
  • Bennion, Brian (Fri Jan 31 2014 - 16:33:18 CST)
• wrapping and extra points in gromacs trajectories
  • John Stone (Fri Aug 05 2005 - 14:44:06 CDT)
  • Mgr. Lubos Vrbka (Thu Aug 04 2005 - 10:59:44 CDT)
• wrapping atoms along a specific axis with pbctools
  • SHIVAM TIWARI (Wed Jun 26 2024 - 03:30:19 CDT)
• Wrapping atoms around unit cell boundaries
  • John Stone (Thu May 22 2003 - 10:14:18 CDT)
• Wrapping creates extra bonds..!
  • zeynab hosseini (Sun Jun 13 2021 - 15:06:41 CDT)
• wrapping DCD files
  • John Stone (Mon Jun 28 2004 - 15:25:39 CDT)
  • Vani Krishna (Mon Jun 28 2004 - 14:25:24 CDT)
• wrapping dimer units in a Desmond traj
  • Irene Newhouse (Thu Mar 18 2010 - 19:43:16 CDT)
  • Irene Newhouse (Tue Mar 02 2010 - 13:51:25 CST)
• Wrapping membrane to center of PBC-Box
  • Bjoern Olausson (Tue Mar 23 2010 - 12:06:31 CDT)
• Wrapping molecules in simulation of an aggregation phenomenon
  • Sourav Ray (Fri Apr 01 2016 - 16:28:45 CDT)
• Wrapping molecules in unit box
  • Ashar Malik (Sun Oct 29 2017 - 18:27:54 CDT)
  • Dallas Warren (Sun Oct 29 2017 - 15:26:54 CDT)
  • Seibold, Steve Allan (Wed Oct 25 2017 - 11:43:23 CDT)
• wrapping multi chain proteins
  • Nicolas Martin (Tue Feb 23 2016 - 06:46:44 CST)
  • Chitrak Gupta (Mon Feb 22 2016 - 14:52:32 CST)
  • Nicolas Martin (Fri Feb 19 2016 - 12:04:18 CST)
  • Josh Vermaas (Fri Feb 19 2016 - 12:10:53 CST)
  • Nicolas Martin (Fri Feb 19 2016 - 12:14:44 CST)
  • Josh Vermaas (Fri Feb 19 2016 - 11:54:04 CST)
  • Nicolas Martin (Fri Feb 19 2016 - 11:48:59 CST)
  • Josh Vermaas (Fri Feb 19 2016 - 09:50:34 CST)
  • Nicolas Martin (Fri Feb 19 2016 - 08:30:12 CST)
• wrapping option in namd
  • Research Jubilant (Wed Mar 19 2014 - 21:34:57 CDT)
• Wrapping problem
  • Jacob Gissinger (Tue Sep 13 2016 - 14:07:02 CDT)
  • John Stone (Thu Sep 08 2016 - 16:17:43 CDT)
  • Jacob Gissinger (Thu Sep 08 2016 - 16:02:52 CDT)
  • Ajasja LjubetiÄ� (Mon May 30 2016 - 03:11:25 CDT)
  • Chitrak Gupta (Fri May 27 2016 - 12:47:36 CDT)
  • Ajasja LjubetiÄ� (Fri May 27 2016 - 11:10:05 CDT)
• wrapping with bigdcd
  • Monika Kumari (Wed Jul 31 2019 - 00:22:34 CDT)
• write a new dcd file for a sub selection of atoms
  • Chitrak Gupta (Tue Oct 24 2017 - 07:25:33 CDT)
  • Ashar Malik (Mon Oct 23 2017 - 18:10:26 CDT)
  • Monika Madhavi (Mon Oct 23 2017 - 17:55:21 CDT)
  • Ashar Malik (Mon Oct 23 2017 - 02:05:30 CDT)
  • Monika Madhavi (Mon Oct 23 2017 - 01:24:03 CDT)
• write bonding/connectivity to file
  • Axel Kohlmeyer (Thu Jan 08 2015 - 16:57:40 CST)
  • Josh Vermaas (Thu Jan 08 2015 - 16:45:32 CST)
  • Eric Smoll (Thu Jan 08 2015 - 15:49:09 CST)
• Write DCD
  • Justin Gullingsrud (Tue May 14 2002 - 10:03:16 CDT)
  • Storr, Mark (Tue May 14 2002 - 09:51:06 CDT)
• write new dcd after duplicating periodic images?
  • Fatemesadat Emami (Fri Jan 11 2013 - 15:12:35 CST)
• write output pdb for lots of different selections
  • Peter Freddolino (Thu Apr 13 2006 - 12:04:25 CDT)
  • Vlad Cojocaru (Thu Apr 13 2006 - 11:48:08 CDT)
• write pdb and psf with missing segments in original pdb file
  • Baoqiang Cao (Tue Sep 27 2005 - 21:10:07 CDT)
• write pdbs of selected frames of a trajectory
  • Jérôme Hénin (Thu Sep 23 2010 - 03:55:43 CDT)
  • Joshua Adelman (Wed Sep 22 2010 - 15:52:11 CDT)
  • Eduard Schreiner (Wed Sep 22 2010 - 15:09:14 CDT)
  • Katherine Parra (Wed Sep 22 2010 - 14:05:58 CDT)
• write psf is generating an error
  • Axel Kohlmeyer (Tue Jul 14 2015 - 11:09:18 CDT)
  • Life Sciences Inc (Tue Jul 14 2015 - 10:27:48 CDT)
  • John Stone (Tue Jul 14 2015 - 10:23:36 CDT)
  • Life Sciences Inc (Wed Jul 08 2015 - 11:59:30 CDT)
• write trajectory of selected atoms
  • Peter Freddolino (Wed Mar 28 2007 - 10:04:03 CDT)
  • Peter Freddolino (Wed Mar 28 2007 - 10:03:01 CDT)
  • namd vmd (Wed Mar 28 2007 - 09:51:28 CDT)
• Write umbrella windows
  • Ropon-Palacios G. (Mon Aug 09 2021 - 10:58:46 CDT)
  • Vermaas, Josh (Mon Aug 09 2021 - 08:00:36 CDT)
  • Ropon-Palacios G. (Sun Aug 08 2021 - 23:31:54 CDT)
• write vel binary file from dcd (command line)
  • Laura Joana (Tue May 24 2016 - 10:57:58 CDT)
  • Maxim Belkin (Tue May 24 2016 - 10:55:28 CDT)
  • Laura Joana (Tue May 24 2016 - 10:41:05 CDT)
• writegmxtop error invalid command name "..."
  • Vermaas, Joshua (Tue Jan 17 2017 - 14:07:19 CST)
  • Axel Kohlmeyer (Tue Jan 17 2017 - 07:14:29 CST)
  • Igor Ariz (Tue Jan 17 2017 - 03:30:36 CST)
• Writepdb all frames of DCD to same file using command line
  • Mike Makowski (Sun Sep 28 2014 - 21:41:06 CDT)
• writepdb and list problem
  • Justin Gullingsrud (Thu Nov 11 2004 - 11:57:24 CST)
  • John Stone (Thu Nov 11 2004 - 10:39:11 CST)
  • pl (Tue Nov 09 2004 - 05:52:51 CST)
• writepdb and list problem- Resolved but still...
  • pl (Fri Nov 12 2004 - 07:59:48 CST)
• writepdb append
  • John Stone (Mon Sep 13 2010 - 12:25:47 CDT)
  • Jacopo Sgrignani (Mon Sep 13 2010 - 05:49:20 CDT)
• writepdb using selection form different molecules
  • Bernardo Sosa Padilla Araujo (Mon Mar 22 2010 - 13:25:35 CDT)
  • Axel Kohlmeyer (Mon Mar 22 2010 - 13:16:43 CDT)
  • John Stone (Mon Mar 22 2010 - 11:05:53 CDT)
  • Bernardo Sosa Padilla Araujo (Fri Mar 19 2010 - 23:29:56 CDT)
• Writepdb with Solvation Box
  • Axel Kohlmeyer (Tue May 06 2008 - 13:25:34 CDT)
  • Alejandro Ortega (Tue May 06 2008 - 12:50:23 CDT)
• writepdb, wrong lines in output
  • Francois Martz (Thu Mar 15 2012 - 04:51:54 CDT)
  • John Stone (Wed Mar 14 2012 - 12:31:18 CDT)
  • Francois Martz (Wed Mar 14 2012 - 12:15:22 CDT)
• writepsf error...
  • Ravinder Abrol (Thu Oct 27 2005 - 16:33:25 CDT)
  • John Stone (Thu Oct 27 2005 - 13:15:39 CDT)
  • Ravinder Abrol (Thu Oct 27 2005 - 06:07:50 CDT)
• writepsf method of atomselect objects generates bad atom types
  • Jim Parker (Wed Oct 16 2013 - 18:25:32 CDT)
  • Josh Vermaas (Wed Oct 16 2013 - 14:37:33 CDT)
  • Jérôme Hénin (Wed Oct 16 2013 - 14:34:23 CDT)
  • Jim Parker (Wed Oct 16 2013 - 13:20:30 CDT)
• writing a new plugin
  • Axel Kohlmeyer (Wed Mar 11 2015 - 05:54:56 CDT)
  • Albert Solernou (Wed Mar 11 2015 - 05:39:50 CDT)
  • Axel Kohlmeyer (Tue Mar 10 2015 - 15:11:59 CDT)
  • Albert Solernou (Tue Mar 10 2015 - 12:12:14 CDT)
  • Pawel Kedzierski (Tue Mar 10 2015 - 07:38:34 CDT)
  • Axel Kohlmeyer (Tue Mar 10 2015 - 07:44:19 CDT)
  • Albert Solernou (Tue Mar 10 2015 - 05:53:09 CDT)
  • John Stone (Mon Mar 09 2015 - 13:00:45 CDT)
  • Albert Solernou (Mon Mar 09 2015 - 10:11:26 CDT)
• writing a new trajectory with selected atoms
  • Smith, Harper E. (Fri Jul 24 2020 - 01:34:26 CDT)
  • Yogesh Sharma (Fri Jul 24 2020 - 01:05:46 CDT)
• Writing a pdb file with header information
  • Nuno R. L. Ferreira (Tue Feb 14 2006 - 04:42:50 CST)
  • Palmer, Teresa (Mon Feb 13 2006 - 16:57:04 CST)
• writing a psf with bonds
  • Axel Kohlmeyer (Mon Aug 20 2012 - 15:15:31 CDT)
  • Joaquim Rui de Castro Rodrigues (Mon Aug 20 2012 - 14:13:34 CDT)
• Writing a trajectory - with box information
  • Jennie Thomas (Tue Nov 21 2006 - 14:46:10 CST)
  • John Stone (Tue Nov 21 2006 - 13:22:11 CST)
  • Jennie Thomas (Tue Nov 21 2006 - 13:13:46 CST)
  • John Stone (Tue Nov 21 2006 - 11:21:20 CST)
  • John Stone (Mon Nov 20 2006 - 22:46:26 CST)
  • Jennie Thomas (Mon Nov 20 2006 - 22:09:12 CST)
• Writing all transformed coordinates into single file
  • Peter Mawanga (Thu Mar 15 2018 - 07:35:36 CDT)
  • Vermaas, Joshua (Wed Mar 14 2018 - 15:51:06 CDT)
  • Peter Mawanga (Wed Mar 14 2018 - 14:23:05 CDT)
• writing charmm psf files
  • John Stone (Fri May 05 2006 - 10:00:11 CDT)
  • MW Van der Kamp, School of Chemistry (Fri May 05 2006 - 09:50:23 CDT)
  • John Stone (Fri May 05 2006 - 09:42:18 CDT)
  • MW Van der Kamp, School of Chemistry (Fri May 05 2006 - 09:02:37 CDT)
• writing coordinates of a selection only
  • Axel Kohlmeyer (Mon Apr 16 2007 - 18:42:26 CDT)
  • Myunggi Yi (Sun Apr 15 2007 - 20:51:19 CDT)
• writing DCD files
  • nordgren_at_sas.upenn.edu (Sat May 07 2005 - 23:48:24 CDT)
  • Axel Kohlmeyer (Fri May 06 2005 - 07:00:05 CDT)
  • Eduard Schreiner (Fri May 06 2005 - 06:57:18 CDT)
  • nordgren_at_sas.upenn.edu (Fri May 06 2005 - 03:54:18 CDT)
• Writing DCD files using animate
  • HEMANTH H (Sat May 23 2020 - 10:28:54 CDT)
  • Giacomo Fiorin (Sat May 23 2020 - 10:25:17 CDT)
  • John Stone (Sat May 23 2020 - 09:49:22 CDT)
  • HEMANTH H (Sat May 23 2020 - 07:27:08 CDT)
  • John Stone (Sat May 23 2020 - 02:17:05 CDT)
  • HEMANTH H (Thu May 21 2020 - 00:18:46 CDT)
• Writing DCD from modified coordinates
  • Adam Goler (Sat Mar 22 2014 - 14:08:10 CDT)
  • Adam Goler (Fri Mar 21 2014 - 18:08:49 CDT)
  • Jérôme Hénin (Fri Mar 21 2014 - 13:04:58 CDT)
  • John Stone (Fri Mar 21 2014 - 13:14:55 CDT)
  • Adam Goler (Fri Mar 21 2014 - 12:21:16 CDT)
  • Ivan Gregoretti (Fri Mar 21 2014 - 07:31:32 CDT)
  • Adam Goler (Thu Mar 20 2014 - 23:59:33 CDT)
• Writing dcd/pdb file of selection from NAMD velocity dcd file
  • Chola Regmi (Wed Mar 19 2014 - 19:36:55 CDT)
  • Josh Vermaas (Wed Mar 19 2014 - 17:35:41 CDT)
  • Chola Regmi (Wed Mar 19 2014 - 16:29:06 CDT)
• writing Gaussian input files in FFTK .....
  • Him Bandhu Upadhyay (Mon Oct 01 2012 - 12:40:44 CDT)
• writing gromacs .trr format with nonorthorhomic cells
  • Matt Watkins (Tue Oct 13 2009 - 11:48:27 CDT)
  • Axel Kohlmeyer (Tue Oct 13 2009 - 08:59:59 CDT)
  • Matt Watkins (Tue Oct 13 2009 - 07:05:27 CDT)
• writing improper dihedral in topotools,
  • Ali Alizadeh (Wed Aug 13 2014 - 00:33:51 CDT)
  • Axel Kohlmeyer (Tue Aug 12 2014 - 17:36:31 CDT)
  • Ali Alizadeh (Tue Aug 12 2014 - 16:31:15 CDT)
• Writing in NAMD binary format in VMD from TCl/Tk console?
  • John Stone (Wed Oct 24 2007 - 17:24:52 CDT)
  • poker_at_physics.usyd.edu.au (Tue Oct 23 2007 - 20:33:05 CDT)
• writing initial coordinates in Amber format
  • Diego Vazquez (Sun Aug 09 2015 - 00:59:17 CDT)
  • Neelanjana Sengupta (Sat Aug 08 2015 - 01:40:04 CDT)
• Writing Lammps data file
  • Axel Kohlmeyer (Sat Apr 04 2015 - 22:51:09 CDT)
  • Benjamin Cowen (Sat Apr 04 2015 - 21:46:30 CDT)
• Writing MolFile plugin for CIF
  • John Stone (Wed Aug 08 2007 - 12:24:57 CDT)
  • Axel Kohlmeyer (Wed Aug 08 2007 - 09:40:14 CDT)
  • Ondrej Sramek (Wed Aug 08 2007 - 06:12:03 CDT)
• Writing new coordinates to file.
  • Josh Vermaas (Tue Mar 04 2014 - 13:27:36 CST)
  • Josh Vermaas (Tue Mar 04 2014 - 13:01:17 CST)
  • Josh Vermaas (Mon Mar 03 2014 - 16:27:05 CST)
  • Axel Kohlmeyer (Mon Mar 03 2014 - 16:04:14 CST)
  • Maxim Belkin (Mon Mar 03 2014 - 15:37:36 CST)
  • Maxim Belkin (Mon Mar 03 2014 - 15:49:00 CST)
  • Dawid das (Mon Mar 03 2014 - 15:25:14 CST)
• Writing out .dcd for discontinous frames
  • Axel Kohlmeyer (Thu Jul 19 2007 - 06:14:19 CDT)
  • Nuno Loureiro Ferreira (Thu Jul 19 2007 - 03:47:18 CDT)
  • Neelanjana Sengupta (Thu Jul 19 2007 - 00:09:36 CDT)
• writing out a new dcd file
  • AnkiReddy katha (Tue Apr 29 2014 - 08:57:17 CDT)
  • Axel Kohlmeyer (Tue Apr 29 2014 - 06:50:35 CDT)
  • Ramin Ekhteiari (Tue Apr 29 2014 - 06:07:48 CDT)
• writing pair/bond/angle/dihedral information for lammps input
  • Axel Kohlmeyer (Sun Apr 29 2012 - 23:52:25 CDT)
  • winardi, erik (Sun Apr 29 2012 - 23:21:01 CDT)
  • Axel Kohlmeyer (Sun Apr 29 2012 - 18:18:24 CDT)
  • winardi, erik (Sun Apr 29 2012 - 17:17:14 CDT)
• writing PDB
  • Matthew Stewart (Thu Oct 24 2013 - 18:30:51 CDT)
  • Bennion, Brian (Thu Oct 24 2013 - 17:23:25 CDT)
  • Josh Vermaas (Thu Oct 24 2013 - 17:03:50 CDT)
  • Rejwan (Thu Oct 24 2013 - 15:49:20 CDT)
  • Sergio Anis (Fri Sep 16 2005 - 11:20:10 CDT)
  • John Stone (Fri Sep 16 2005 - 11:17:13 CDT)
  • Sergio Anis (Thu Sep 15 2005 - 21:52:21 CDT)
  • John Stone (Thu Sep 15 2005 - 11:41:18 CDT)
  • Sergio Anis (Wed Sep 14 2005 - 06:06:48 CDT)
  • Sergio Anis (Tue Sep 13 2005 - 12:26:12 CDT)
  • Leonardo Sepulveda Durán (Tue Sep 13 2005 - 11:50:04 CDT)
  • Sergio Anis (Mon Sep 12 2005 - 22:07:04 CDT)
• Writing pdb files for trajectory frames
  • John Stone (Wed Sep 29 2004 - 15:22:49 CDT)
  • Raymond C. Fort Jr. (Wed Sep 29 2004 - 15:18:41 CDT)
• Writing pdb without chain identifier
  • Justin Gullingsrud (Wed Dec 27 2006 - 20:57:25 CST)
  • Cesar Luis Avila (Wed Dec 27 2006 - 12:54:25 CST)
  • Justin Gullingsrud (Wed Dec 27 2006 - 09:11:07 CST)
  • Cesar Luis Avila (Tue Dec 26 2006 - 17:16:51 CST)
  • Marcos Sotomayor (Tue Dec 26 2006 - 15:03:23 CST)
  • Cesar Luis Avila (Tue Dec 26 2006 - 14:49:45 CST)
• Writing povray files from a VMD trajectory
  • Axel Kohlmeyer (Tue Apr 09 2013 - 15:16:47 CDT)
  • John Stone (Tue Apr 09 2013 - 14:56:55 CDT)
  • Gordon S Freeman (Tue Apr 09 2013 - 14:32:07 CDT)
• writing psf file without any coordinates
  • Miro Astore (Wed Jan 22 2020 - 21:14:10 CST)
  • Axel Kohlmeyer (Wed Jan 22 2020 - 20:23:25 CST)
  • Miro Astore (Wed Jan 22 2020 - 19:19:44 CST)
• Writing Python Plugins properly
  • jonathan (Wed Aug 11 2010 - 06:54:10 CDT)
  • Axel Kohlmeyer (Tue Aug 10 2010 - 21:38:07 CDT)
  • jonathan (Mon Aug 09 2010 - 11:48:25 CDT)
• writing velocities from VMD
  • John Stone (Wed Apr 09 2014 - 11:35:28 CDT)
  • Axel Kohlmeyer (Fri Apr 04 2014 - 06:36:30 CDT)
  • Marcela Madrid (Thu Apr 03 2014 - 19:31:10 CDT)
• Writing velocities in lammps dump file
  • Axel Kohlmeyer (Thu Apr 27 2017 - 06:28:09 CDT)
  • Karteek Kumar (Thu Apr 27 2017 - 00:40:02 CDT)
• Writing Wrapped coordinates to a xyz file using TCL script
  • Abhishek Bagusetty (Sat Oct 24 2015 - 14:19:36 CDT)
• wrong bond and bond breaking
  • Shahid Qamar (Fri Apr 15 2005 - 13:19:24 CDT)
  • Hyonseok Hwang (Fri Apr 15 2005 - 12:24:00 CDT)
  • John Stone (Fri Apr 15 2005 - 11:46:09 CDT)
  • Hyonseok Hwang (Fri Apr 15 2005 - 11:14:43 CDT)
• wrong bond drawing with pdb files
  • John Stone (Fri Aug 05 2005 - 15:43:27 CDT)
  • Peter Schellenberg (Thu Jul 14 2005 - 07:03:50 CDT)
  • Eduard Schreiner (Thu Jul 14 2005 - 01:38:46 CDT)
  • John Stone (Wed Jul 13 2005 - 10:04:22 CDT)
  • Peter Schellenberg (Wed Jul 13 2005 - 03:02:52 CDT)
  • John Stone (Tue Jul 12 2005 - 17:37:23 CDT)
  • Eduard Schreiner (Tue Jul 12 2005 - 11:01:24 CDT)
  • Peter Schellenberg (Tue Jul 12 2005 - 02:36:11 CDT)
• wrong bonds during loading pdb file(protein plus lipids)
  • John Stone (Mon Mar 02 2009 - 11:15:27 CST)
  • Axel Kohlmeyer (Fri Feb 27 2009 - 22:01:19 CST)
  • Nikolay Simakov (Fri Feb 27 2009 - 21:24:13 CST)
  • Axel Kohlmeyer (Fri Feb 27 2009 - 20:47:32 CST)
  • Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
  • John Stone (Fri Feb 27 2009 - 16:23:19 CST)
  • Nikolay Simakov (Fri Feb 27 2009 - 16:01:30 CST)
• Wrong coordinates using guesscoord in psfgen - lipids
  • poker_at_physics.usyd.edu.au (Wed Jun 17 2009 - 02:30:55 CDT)
• Wrong net charge after patch
  • Reinke.Patrick_at_mh-hannover.de (Sat Dec 21 2019 - 12:26:37 CST)
• www.tcl.tk DNS taken by cybersquatter...
  • John Stone (Fri Oct 30 2015 - 16:47:17 CDT)
• X & Y co-ordinate data
  • Axel Kohlmeyer (Sun May 01 2011 - 12:12:09 CDT)
  • ban arn (Sun May 01 2011 - 11:27:39 CDT)
• X error
  • John Stone (Mon Sep 05 2005 - 13:44:20 CDT)
  • Adrian turjanski (Sun Sep 04 2005 - 16:00:59 CDT)
• X server is not capable of displaying double RGB images with a Z buffer
  • Axel Kohlmeyer (Tue Oct 20 2009 - 10:40:59 CDT)
  • Ma.Busch (Tue Oct 20 2009 - 04:09:40 CDT)
• X-PLOR EDM files (from AMBER)
  • Vlad Cojocaru (Wed Feb 01 2006 - 09:05:37 CST)
  • John Stone (Fri Jan 20 2006 - 14:27:39 CST)
• x-plor map file and readedm
  • John Stone (Tue Nov 18 2003 - 14:54:13 CST)
  • Francesca Mocci (Wed Nov 12 2003 - 05:47:26 CST)
  • John Stone (Tue Nov 11 2003 - 10:56:28 CST)
  • Francesca Mocci (Tue Nov 11 2003 - 09:11:11 CST)
• X11 on Mac 10.8
  • Valentina Erastova (Mon Aug 05 2013 - 09:50:05 CDT)
• X3D render NewRibbons only in blue
  • Jean Richelle (Fri Nov 25 2016 - 08:59:19 CST)
  • John Stone (Fri Nov 25 2016 - 01:02:21 CST)
  • Jean Richelle (Thu Nov 24 2016 - 10:04:44 CST)
  • John Stone (Wed Nov 23 2016 - 01:08:01 CST)
  • Jean Richelle (Wed Nov 23 2016 - 00:19:29 CST)
• X3DOM sphere resolution
  • John Stone (Thu Apr 21 2011 - 17:14:10 CDT)
  • John Stone (Thu Apr 14 2011 - 15:05:00 CDT)
  • John Stone (Wed Apr 13 2011 - 12:51:08 CDT)
  • Joshua A. Anderson (Wed Apr 13 2011 - 11:34:52 CDT)
  • John Stone (Wed Apr 13 2011 - 10:02:38 CDT)
  • John Stone (Wed Apr 13 2011 - 09:49:34 CDT)
  • Joshua A. Anderson (Wed Apr 13 2011 - 07:09:37 CDT)
• X_ChangeProperty error
  • John Stone (Mon Feb 15 2010 - 16:18:27 CST)
  • Bennion, Brian (Fri Feb 12 2010 - 14:50:27 CST)
• X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40
  • Guanglei Cui (Tue Jan 08 2008 - 14:40:43 CST)
  • John Stone (Tue Jan 08 2008 - 14:09:56 CST)
  • John Stone (Tue Jan 08 2008 - 14:10:41 CST)
  • Brian Bennion (Mon Jan 07 2008 - 10:58:36 CST)
  • Guanglei Cui (Mon Jan 07 2008 - 08:35:14 CST)
• Xenon binding site free energies
  • Aaron Oakley (Thu Oct 27 2011 - 01:30:23 CDT)
• XenoView saved file (.car/.mdf file)
  • John Stone (Thu Sep 26 2019 - 13:48:38 CDT)
  • Axel Kohlmeyer (Tue Sep 24 2019 - 11:20:18 CDT)
  • Patrik Molnár (Tue Sep 24 2019 - 10:49:39 CDT)
  • Patrik Molnár (Tue Sep 24 2019 - 01:11:46 CDT)
• XOpenIM failed (failed to find CUDA devices)
  • John Stone (Wed Dec 03 2014 - 14:34:31 CST)
  • Vlad Cojocaru (Wed Dec 03 2014 - 14:36:38 CST)
  • John Stone (Wed Dec 03 2014 - 14:31:21 CST)
  • Vlad Cojocaru (Wed Dec 03 2014 - 14:23:30 CST)
  • John Stone (Wed Dec 03 2014 - 14:04:03 CST)
  • Vlad Cojocaru (Wed Dec 03 2014 - 14:00:49 CST)
  • John Stone (Wed Dec 03 2014 - 13:21:49 CST)
  • Axel Kohlmeyer (Wed Dec 03 2014 - 13:21:23 CST)
  • Vlad Cojocaru (Wed Dec 03 2014 - 12:47:20 CST)
  • Vlad Cojocaru (Wed Dec 03 2014 - 12:50:06 CST)
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  • John Stone (Wed Dec 03 2014 - 10:26:57 CST)
  • Vlad Cojocaru (Wed Dec 03 2014 - 06:47:01 CST)
• xplor vs. charmm PSF files / psfgen
  • Justin Gullingsrud (Thu Dec 04 2003 - 01:17:52 CST)
  • Mike McCallum (Thu Dec 04 2003 - 00:05:25 CST)
• XRD from a structure
  • Fatemesadat Emami (Wed Mar 19 2014 - 16:01:03 CDT)
• Xrequest in VMD
  • Axel Kohlmeyer (Wed May 12 2010 - 06:44:02 CDT)
  • Mantzalis, Dimitrios (Wed May 12 2010 - 06:03:28 CDT)
• XTC files in 1.8a21
  • John Stone (Wed Oct 16 2002 - 10:22:41 CDT)
  • Dmitry Kovalsky (Wed Oct 16 2002 - 04:08:30 CDT)
• xtc plugin writing ability
  • Axel Kohlmeyer (Fri Aug 05 2011 - 09:09:00 CDT)
  • Francesco Oteri (Fri Aug 05 2011 - 07:39:59 CDT)
• XTC to DCD conversion
  • rajan kumar (Sat Apr 18 2015 - 03:33:16 CDT)
  • John Stone (Fri Apr 17 2015 - 16:37:51 CDT)
  • rajan kumar (Thu Apr 16 2015 - 13:41:24 CDT)
• xterm
  • Axel Kohlmeyer (Sat Dec 18 2010 - 04:42:42 CST)
  • zaizhi lai (Fri Dec 17 2010 - 18:52:30 CST)
• xterm problem??
  • Jerome Henin (Fri Oct 27 2006 - 13:56:32 CDT)
  • John Stone (Fri Oct 27 2006 - 11:39:50 CDT)
  • Patrycja (Fri Oct 27 2006 - 09:31:11 CDT)
• xy diagonal
  • Davide Provasi (Wed Jun 08 2011 - 13:23:40 CDT)
  • Magnus Andersson (Wed Jun 08 2011 - 12:29:30 CDT)
• XYZ
  • M K (Thu Dec 01 2016 - 17:33:23 CST)
  • Bashir (Thu Dec 01 2016 - 10:52:03 CST)
  • John Stone (Tue Oct 19 2004 - 18:41:03 CDT)
  • pinisetty dinesh (Tue Oct 19 2004 - 18:18:11 CDT)
• xyz aluminium connectivity questions
  • John Stone (Tue Apr 13 2004 - 13:42:52 CDT)
  • Axel Kohlmeyer (Tue Apr 13 2004 - 11:27:30 CDT)
  • Lubos Vrbka (Tue Apr 13 2004 - 10:29:07 CDT)
  • Kooser, Ara S (Tue Apr 13 2004 - 10:14:28 CDT)
  • Lubos Vrbka (Tue Apr 13 2004 - 09:59:52 CDT)
  • Kooser, Ara S (Tue Apr 13 2004 - 09:42:10 CDT)
  • Lubos Vrbka (Tue Apr 13 2004 - 09:01:56 CDT)
• xyz animation
  • James Rustad (Thu Jul 06 2006 - 13:19:21 CDT)
  • John Stone (Thu Jul 06 2006 - 12:56:46 CDT)
  • Jayendra Balasubramanian (Thu Jul 06 2006 - 11:00:52 CDT)
• xyz file
  • John Stone (Wed Oct 20 2004 - 17:49:01 CDT)
• xyz file and VASP CHGCAR file do not overlap
  • Decai Yu (Wed Feb 17 2010 - 11:23:56 CST)
  • Axel Kohlmeyer (Mon Feb 15 2010 - 11:22:28 CST)
  • Decai Yu (Mon Feb 15 2010 - 10:26:46 CST)
  • matt watkins (Fri Feb 12 2010 - 19:54:08 CST)
  • Axel Kohlmeyer (Fri Feb 12 2010 - 15:00:45 CST)
  • Decai Yu (Fri Feb 12 2010 - 15:20:16 CST)
  • Decai Yu (Fri Feb 12 2010 - 13:29:44 CST)
• xyz file format
  • John Stone (Fri Jun 11 2004 - 09:16:53 CDT)
  • John Stone (Wed Jun 09 2004 - 14:06:24 CDT)
  • Justyna Jaroniec (Wed Jun 09 2004 - 13:54:17 CDT)
• XYZ file to video
  • John Stone (Wed Jul 28 2004 - 08:42:17 CDT)
  • John M. Kolinski (Wed Jul 28 2004 - 08:26:10 CDT)
• xyz files and VMD 1.8.2
  • John Stone (Wed Feb 11 2004 - 18:49:54 CST)
  • Samartha G. Anekal (Wed Feb 11 2004 - 12:32:22 CST)
• xyz files into dcd trajectory
  • John Stone (Wed May 24 2006 - 16:19:15 CDT)
  • Ioana Cozmuta (Wed May 24 2006 - 16:11:22 CDT)
  • John Stone (Wed May 24 2006 - 15:58:23 CDT)
  • Ioana Cozmuta (Wed May 24 2006 - 15:38:54 CDT)
  • John Stone (Wed May 24 2006 - 13:00:34 CDT)
  • Ioana Cozmuta (Tue May 23 2006 - 18:55:51 CDT)
• xyz movie
  • John Stone (Thu Oct 31 2002 - 19:56:59 CST)
  • eric hu (Thu Oct 31 2002 - 17:58:15 CST)
• xyz plugin
  • John Stone (Tue Apr 20 2004 - 09:37:19 CDT)
  • Lubos Vrbka (Tue Apr 20 2004 - 04:19:14 CDT)
  • Axel Kohlmeyer (Tue Apr 20 2004 - 01:55:15 CDT)
  • John Stone (Mon Apr 19 2004 - 11:49:49 CDT)
  • Lubos Vrbka (Mon Apr 19 2004 - 09:16:46 CDT)
• xyz to psf
  • John Stone (Wed Mar 24 2004 - 15:47:03 CST)
  • Kooser, Ara S (Wed Mar 24 2004 - 11:22:42 CST)
• XYZ to psf file
  • Bharat Sharma (Thu Apr 09 2015 - 20:01:46 CDT)
  • Vasiliy Triandafilidi (Thu Apr 09 2015 - 19:25:44 CDT)
  • John Stone (Thu Apr 09 2015 - 11:49:16 CDT)
  • Bharat Sharma (Thu Apr 09 2015 - 09:43:10 CDT)
• XYZ trajectory with different atom types?
  • Axel Kohlmeyer (Fri Jan 16 2009 - 14:00:00 CST)
  • AA (Fri Jan 16 2009 - 13:21:15 CST)
• xyz-file loading
  • Kooser, Ara S (Wed Sep 01 2004 - 15:32:50 CDT)
  • John Stone (Wed Sep 01 2004 - 13:14:24 CDT)
  • pinisetty dinesh (Wed Sep 01 2004 - 12:50:06 CDT)
• xzy format and ResType
  • Axel Kohlmeyer (Tue Nov 17 2009 - 14:40:46 CST)
  • Christine Horejs (Tue Nov 17 2009 - 14:03:01 CST)
• Yes Another HPUX problem
  • Justin Gullingsrud (Thu Sep 19 2002 - 10:37:08 CDT)
  • Tobias Mandrup Johansen (Thu Sep 19 2002 - 10:04:42 CDT)
• Yet another python question: how to run a python script from the vmd console ?
  • John Stone (Wed Feb 01 2012 - 23:33:46 CST)
  • maria goranovic (Fri Jan 13 2012 - 05:04:16 CST)
• You and a Rolex watch
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  • Althea Lake (Tue Apr 15 2008 - 17:12:00 CDT)
• You are right. That's the problem.
  • Axel Kohlmeyer (Mon Oct 08 2007 - 12:10:07 CDT)
• You can s4ve 80%
  • Sherman Sherman (Wed Apr 02 2008 - 10:10:22 CDT)
• You can s4ve 80% Villa
  • Norberto Martinez (Mon Jul 21 2008 - 01:18:56 CDT)
• You can save 80%
  • Arturo Fernandez (Fri Apr 25 2008 - 05:58:21 CDT)
  • Annabelle Posey (Thu Apr 17 2008 - 17:58:17 CDT)
• Your C0deine 0rder #247424
  • Fran Villa (Fri Mar 06 2009 - 19:51:11 CST)
• your mail
  • Axel Kohlmeyer (Wed May 21 2008 - 09:17:12 CDT)
  • Axel Kohlmeyer (Mon Jan 28 2008 - 19:36:38 CST)
  • Barry Isralewitz (Tue Jan 02 2007 - 12:21:16 CST)
  • John Stone (Tue Sep 27 2005 - 09:51:37 CDT)
  • John Stone (Fri Sep 16 2005 - 11:19:00 CDT)
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  • dtp3+_at_pitt.edu (Tue Jan 04 2005 - 13:12:57 CST)
  • Axel Kohlmeyer (Tue Jan 04 2005 - 01:25:10 CST)
  • John Stone (Mon Jan 03 2005 - 15:15:20 CST)
  • John Stone (Thu Nov 18 2004 - 17:41:57 CST)
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  • Marc Baaden (Tue Dec 09 2003 - 10:54:28 CST)
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• your mail athlon 64/opteron VMD
  • Jerry Ebalunode (Mon Mar 08 2004 - 17:34:48 CST)
  • John Stone (Mon Mar 08 2004 - 17:41:17 CST)
• Your Pharm4cy 0rder #2299650
  • Mary Rudd (Mon Apr 23 2007 - 17:50:29 CDT)
• Your Pharm4cy 0rder #3747312
  • Andres Bynum (Sat Apr 21 2007 - 19:50:21 CDT)
• Your Pharm4cy 0rder #530152
  • Susanna Crowe (Tue Aug 28 2007 - 05:22:21 CDT)
• Your V1agra 0rder #18671
  • Willie Bray (Sat Apr 21 2007 - 02:54:52 CDT)
• Your Val1um 0rder #63504
  • Donnie Skinner (Tue Apr 24 2007 - 13:01:46 CDT)
• Your Val1um 0rder #6578980
  • Owen Lindsay (Fri Apr 20 2007 - 22:11:49 CDT)
• Your Val1um 0rder #799563
  • Eliza Wray (Fri Aug 31 2007 - 10:02:23 CDT)
• Your Zoc0r 0rder #46390
  • Vito Ashley (Tue Sep 04 2007 - 03:20:14 CDT)
• Z-axis data extraction
  • Aashish Bhatt (Thu Jun 21 2018 - 23:13:00 CDT)
• z-direction selection
  • Aashish Bhatt (Mon Jun 18 2018 - 00:33:50 CDT)
• zero box vector
  • Axel Kohlmeyer (Sun Mar 13 2011 - 11:49:26 CDT)
  • leila karami (Sun Mar 13 2011 - 10:14:49 CDT)
  • Axel Kohlmeyer (Sat Mar 12 2011 - 05:20:48 CST)
  • leila karami (Sat Mar 12 2011 - 00:50:40 CST)
  • Axel Kohlmeyer (Thu Mar 10 2011 - 12:37:31 CST)
  • leila karami (Thu Mar 10 2011 - 11:27:59 CST)
  • leila karami (Thu Mar 10 2011 - 08:04:14 CST)
  • Olaf Lenz (Thu Mar 10 2011 - 07:07:35 CST)
  • leila karami (Thu Mar 10 2011 - 06:11:56 CST)
• Zinc ion visualization from Amber trajectory
  • JC Gumbart (Tue Nov 01 2016 - 14:42:04 CDT)
  • Aditya Padhi (Tue Oct 25 2016 - 19:44:12 CDT)
• zinc-finger protein simulation
  • hamze rahimi (Mon Jul 18 2011 - 06:55:08 CDT)
• ZN2 vs MG?
  • John Stone (Wed Nov 29 2006 - 14:14:33 CST)
  • Samuel C Flores (Wed Nov 29 2006 - 12:27:50 CST)
• zoom and focus on on a selection
  • Bennion, Brian (Tue Mar 14 2017 - 10:31:59 CDT)
  • Thomas Evangelidis (Tue Mar 14 2017 - 07:35:00 CDT)
• Zoom-to-fit before rendering
  • Stefan Doerr (Thu Mar 02 2017 - 08:13:37 CST)
  • Stefan Doerr (Thu Mar 02 2017 - 08:04:36 CST)
  • Stefan Doerr (Thu Mar 02 2017 - 04:30:10 CST)
• zooming into a chosen atom
  • Irem Altan (Wed Jun 15 2016 - 15:56:29 CDT)
• Zooming with Tcl?
  • John Stone (Thu Sep 15 2005 - 10:50:31 CDT)
  • Scott Thibault (Thu Sep 15 2005 - 08:31:08 CDT)
• ~1,5 million system
  • Steven Neumann (Tue Apr 11 2017 - 03:51:17 CDT)
• ~Tawhid Ezaz~
  • Tawhid Ezaz (Mon Mar 11 2013 - 14:57:41 CDT)
• ´ð¸´: classify and compute the forces between two atoms
  • ChenFei (Tue Feb 26 2008 - 01:10:29 CST)
• ´ð¸´: tkcon problem with my vmd
  • dong (Tue Sep 28 2004 - 01:54:33 CDT)
• ´ð¸´: ´ð¸´: How to show section contour of volumetric data
  • CHEN, Chi (Tue Oct 01 2013 - 03:08:42 CDT)
• µªÎ`: How to show section contour of volumetric data
  • Axel Kohlmeyer (Tue Oct 01 2013 - 02:58:10 CDT)
• “Filesize limit exceeded (core dumped)Q=80=9D_with_VMD_on_Linux?=
  • Axel Kohlmeyer (Thu May 26 2022 - 12:09:10 CDT)
• ★ vmd-l@ks.uiuc.edu., Parth left a message for you
  • Hot or Not (Mon Sep 16 2013 - 22:51:51 CDT)
• 回å¤�： why does VMD load dcd file so slowly?
  • yp sun (Sun May 26 2013 - 04:00:43 CDT)
• ç­”å¤�： c_top2psf.pl
  • Axel Kohlmeyer (Sun Aug 31 2014 - 10:38:00 CDT)
• ç­”å¤�： non-bonded interactions
  • sunyeping (Thu Dec 25 2014 - 03:46:36 CST)
• ç­”å¤�： the usage of measure bond
  • sunyeping (Mon Dec 29 2014 - 20:01:36 CST)
• 访问我的图片
  • 楚霸天下 (Fri Apr 01 2011 - 02:14:16 CDT)