VMD-L Mailing List

From: Margaret Cheung (cheung_at_physics.ucsd.edu)
Date: Tue Oct 15 2002 - 16:14:57 CDT

Dear John,

Thank you very much. Brian kindly suggested me to install a plugin he
made. Dr. Case from Scripps gave me a quick solution to view it by
using an amber command "new2oldparm".

Sincerely,
Margaret S. Cheung
Physics Department 0319
University of California, San Diego
9500 Gilman Drive,
La Jolla, CA 92093-0319
http://www-physics.ucsd.edu/~cheung

On Tue, 15 Oct 2002, John Stone wrote:

>
> Hi Margaret,
> Brian Bennion has been working on a VMD plugin that'll read
> Amber 7 files. I'm not sure what the status is on this, but I know
> that he's had it working for a while, so the best thing would be
> to ask him if you can get a copy of that plugin and use it with
> one of the VMD 1.8 test versions.
>
> Thanks,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Fri, Oct 11, 2002 at 06:10:35PM -0700, Margaret Cheung wrote:
> > Dear All,
> >
> > It appeared that amber7 has a different format for the prmtop file.
> > Therefore, I can no longer load molecules by using "parm and crd" option
> > from the vmd menus. Please help. Thank you very much.
> >
> > Sincerely,
> > Margaret S. Cheung
> > Physics Department 0319
> > University of California, San Diego
> > 9500 Gilman Drive,
> > La Jolla, CA 92093-0319
> > http://www-physics.ucsd.edu/~cheung
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>