VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Nov 14 2002 - 16:02:48 CST
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Hi Stefano,
VMD uses the program "Stride" for its secondary structure determination
and cartoon representations. This Tcl script should allow you to use
the secondary structure information in a PDB file instead of what
Stride calculates. Also, you could use this script as a guide in
writing your own script routine to customize the secondary structure.
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/vmd_use_pdb_ss/
Thanks,
John Stone
vmd_at_ks.uiuc.edu
On Wed, Nov 13, 2002 at 01:27:33PM +0100, stefano ricagno wrote:
> I am trying to do a picture of my structure with cartoon but vmd doesn't
> see a short ß-strand which is drawn as a turn instead:
> any idea if it is possible to change some parameters to have that ß-strand?
> thanks
> stefano
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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- In reply to: stefano ricagno: "cartoon representation"
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- Reply: Robert Campbell: "Re: cartoon representation"
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