VMD-L Mailing List

From: Avell Diroll (avelldiroll_at_yahoo.fr)
Date: Tue Nov 27 2007 - 03:22:21 CST

aneesh cna wrote:
> hello vmd users,
> I would like to know whether there is any way to get a
> hydrophobicity plot for a protein (with more than 200) residues using
> VMD.

You might be interested in a script i ported a while ago that generate
lipophilicity 3D map from a pdb file that you may import in VMD (dx format).
The code is usable, but slow ... I will improve the calculation speed as
soon as I will have more time ...

Anyway, you may found it here:
http://code.google.com/p/pymlp/

HIH
cheers

Julien 

-- 
I used to think that the brain was the most important organ in the body
until I realized who was telling me this. --E.P.