VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_cmm.chem.upenn.edu)
Date: Mon Dec 10 2007 - 15:26:30 CST

On Mon, 10 Dec 2007, Harish Lnu wrote:

HV> Hi all,

HV> I was wondering if it is possible using VMD to generate a helix of
HV> any type given the amino acid sequence? If there is some other way
HV> outside the scope of VMD, please let me know too. Any suggestions
HV> will be highly helpful.

check out the Molefacture Protein Builder:

Extensions->Molefacture->Build->Protein Builder

cheers,
   axel.

HV>
HV> Thanks and Regards
HV> Harish
HV>
HV> -------------------------------------------------
HV> Harish Vashisth (Ph.D Candidate)
HV> CAT-361,Chemical & Biological Eng.
HV> Drexel University, Philadelphia, PA
HV> office: 215-895-5823
HV> 

-- 
=======================================================================
Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
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If you make something idiot-proof, the universe creates a better idiot.