VMD-L Mailing List
From: Olaf Lenz (olenz_at_fias.uni-frankfurt.de)
Date: Mon Jan 14 2008 - 03:51:10 CST
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- In reply to: Nazanin Samadi: "PBC"
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Nazanin Samadi wrote:
> Hi everyone. I have simulated a system with a chain in it with periodic
> boundary conditions, does anybody know how can I bring all the atoms
> into its centeral image? because in visualizing ,the bonds between atoms
> look so strange and I know it is because of the PBC!
> please help me. I really need that.
Just use the "pbctools", a plugin that is part of VMD since VMD 1.8.6:
http://www.ks.uiuc.edu/Research/vmd/plugins/pbctools/
Olaf
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