VMD-L Mailing List
From: L. Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Sun Feb 10 2008 - 15:44:04 CST
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Hi all,
I'm using the NAMD energy plugin included in VMD 1.8.6. I noticed that
there is a new option in the GUI mode to set a dielectric constant.
However, it is not clear to me if that value corresponds to the solute
(in this case a protein or a peptide) or for the solvent. I assume is
for the latter. Your comments will be, as always, appreciated.
Cheers,
Michel
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