VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Feb 15 2008 - 15:40:29 CST

Hi,
  I don't have access to a copy of that paper, but you should have a look
at Axel Kohlmeyer's tutorials here, which contain a great deal of useful
tips on generating geometric renderings for glyphs like arrows that you
might use for this sort of thing:
  http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/cpmd-vmd/index.html

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Feb 11, 2008 at 04:02:59PM -0300, Jorge Hernandez Fernandez wrote:
>
> Dear colleagues:
> We in our Lab. are working on big integrin domains movements during
> dynamics. As part of the analyzed literature we take the work
> "HOW THE HEADPIECE HINGE ANGLE IS OPENED: NEW INSIGHTS INTO THE DYNAMICS OF
> INTEGRIN ACTIVATION, J Cell Biol. 2006; 175(2): 349"; and start to work with
> the plug-in Hingefind (tcl) inside VMD 1.8.5 (Win-XP). The central point in
> this mail is to obtain more information about the way to obtain the calculated
> hinge for each point of MD trajectory to a pretty graphic as in fig 3 on that
> paper.
> Important to say that I'm not an experienced tcl user, so any help in
> this task is very welcome......
> Looking forward to take good news form the community,
>
> Jorge H.F.
>
>
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-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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