VMD-L Mailing List
From: Jorgen Simonsen (jorgen589_at_gmail.com)
Date: Fri Feb 29 2008 - 07:03:18 CST
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Hi all,
I am aligning a small protein 60 residues but when I try to align either
using a script or within VMD I get the following error
vmd > Matrix: Warning: no convergence (0.00001000<2471.54272461 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2621.95825195 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2537.53881836 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2660.39746094 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2565.06079102 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2603.86938477 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2722.60668945 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2739.83642578 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2781.16186523 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2830.56494141 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2861.32617188 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2903.87231445 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2882.46435547 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2583.71997070 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2723.31542969 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<3037.93212891 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2877.39111328 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2822.49243164 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<3063.49023438 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2614.22607422 after 1000
iterations).
Matrix: Warning: no convergence (0.00001000<2570.64282227 after 1000
iterations).
how to fix this? Any advice or suggestions appreciated
Thanks in advance
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