VMD-L Mailing List

From: SENTHIL KUMAR (nucleic81_at_gmail.com)
Date: Thu Mar 20 2008 - 01:11:02 CDT

hi , i wish ti calculate rmsd for some 30 similar RNA structures from
various pdb sources.

an earlier program did not pik up hetatm and i realised it late :(
can you let me know how to do it in vmd , i knew the plugins in vmd.
but how to do in commnad line tcl console and how to feed all the
files so i can run all with all rmsd calculation