VMD-L Mailing List
From: Ignacio Fernández Galván (jellby_at_yahoo.com)
Date: Tue Jun 24 2008 - 03:25:40 CDT
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--- On Tue, 24/6/08, wangyong_at_dicp.ac.cn <wangyong_at_dicp.ac.cn> wrote:
> I want to visualize a PDB file containing chlorine
> "CL" and iron "Fe" atoms.
> But VMD seems made a mistake to recognize "CL" to
> be "C" (carbon), and "Fe" to be fluorin
If I understand correctly, "CL" and "Fe" are the atom names (columns 13-16). You can add the element symbols in columns 77-78 of the PDB file, see <http://www.wwpdb.org/documentation/format23/sect9.html>.
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- Next message: Esben A. Gad: "Re: Re: PSF works in NAMD but not in VMD"
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