VMD-L Mailing List

From: Leonardo Trabuco (ltrabuco_at_ks.uiuc.edu)
Date: Fri Jul 11 2008 - 01:51:51 CDT

On Thu, Jul 10, 2008 at 03:30:39PM -0700, Dong Xu wrote:
> Is this QR algorithm implemented in MultiSeq? I can't seem to find it.
>
> P. O'Donoghue and Z. Luthey-Schulten; Evolutionary profiles derived
> from the QR factorization of multiple structural alignments gives an
> economy of information; J. Mol. Biol., 346, 875-894, (2005).

Yes. Have you checked the MultiSeq manual?
http://www.scs.uiuc.edu/~schulten/multiseq/

Search -> Select Non-Redundant Set...

Cheers,
Leo 

-- 
Leonardo Trabuco, Ph.D. student
Theoretical and Computational Biophysics Group
University of Illinois at Urbana-Champaign