VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Aug 07 2008 - 12:52:48 CDT

Hi,
  At present nobody has written a VMD plugin for reading/writing
SDF files. My suggestion would be to try using Babel or OpenBabel
to convert to/from this format.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Aug 07, 2008 at 12:20:59PM +0200, max_at_liaad.up.pt wrote:
> Hello,
> Is it possible after loading a PDB file and changing the molecule
> structure (like add ou delete bonds using Tcl) save the new structure
> information (the altered molecule) into a SDF file?
>
> Thank you.
>
> Max Pereira
> 

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