VMD-L Mailing List

From: nicholas lee (nicholjl_at_usc.edu)
Date: Thu Aug 14 2008 - 14:25:07 CDT

Hi,

I'm relatively new to VMD. I want to specify bonds between atoms in a LAMMPS trajectory file so they appear in VMD.
I tried this under "Graphics" -> "Representations" -> "Dynamic Bonds" -> "Distance cut-off" but no matter how large I set the cutoff distance the atoms do not connect. What should I do instead?

Thanks in advance for your help.

Nicholas J. Lee