VMD-L Mailing List
From: Leandro Martínez (leandromartinez98_at_gmail.com)
Date: Thu Sep 25 2008 - 14:51:00 CDT
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Hi Ananyo,
You probably want to wrap your coordinates, use
the PBCtools for that:
http://www.ks.uiuc.edu/Research/vmd/plugins/pbctools/
Leandro.
On Thu, Sep 25, 2008 at 3:29 PM, Ananyo Bandyopadhyay <abandyop_at_mtu.edu>wrote:
> Hi all
>
> Can somebody guide me of how to make a cuboid box in VMD? I am making
> amorphous polymers with periodic boundary conditions (20 angstroms length
> along each axis) but when I am seeing the molecules in VMD, the box does not
> show up. I want the box so that the molecules appear to be inside a box of
> finite volume and not just scattered in space.
>
> Thanks and regards
> Ananyo.
>
> PhD student
> Department of Materials Sciences and Engineering
> Michigan Technological University
>
>
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