From: Ramya Gamini (
Date: Tue Jan 06 2009 - 12:27:22 CST

Hi JohnDid you try the following ?! In the VMD main Console go to
Labels have different options under Names. In your case, you may chose Bonds
and color them accordingly.
I guess this is what you are looking for.

On Tue, Jan 6, 2009 at 11:39 AM, <> wrote:

> Dear all,
> I have ran into a representation problem which hopefully someone can help
> me with. I've inserted a 4-bromophenol residue into my protein and wish to
> render an image. The problem is that bromine is by default white, so the
> color of the bond between the carbon and bromine is cyan-white. I need
> this bond to be colored cyan-tan, but not sure as to how to do this. I've
> tried stacking multiple representations but cannot obtain anything better
> then a carbon-bromine bond to appear all tan, not cyan-tan. Any
> suggestions?
> Cheers!
> John